CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 1.1E-7 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.1E-7 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.1E-7 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 203 513 6.7E-153 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Gene3D G3DSA:3.40.50.880 5 223 2.4E-55 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 SUPERFAMILY SSF52402 188 406 1.1E-60 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Pfam PF00117 Glutamine amidotransferase class-I 12 190 3.9E-46 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 SUPERFAMILY SSF52317 8 228 7.52E-57 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 1.7E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 1.7E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 1.7E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 SUPERFAMILY SSF54810 393 513 3.01E-49 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Gene3D G3DSA:3.40.50.620 224 381 1.4E-30 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 513 54.652 T 29-03-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00097 Anthranilate synthase component II signature 168 181 5.2E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00097 Anthranilate synthase component II signature 54 63 5.2E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 PRINTS PR00097 Anthranilate synthase component II signature 81 92 5.2E-6 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Gene3D G3DSA:3.30.300.10 389 513 6.2E-52 T 29-03-2018 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Pfam PF00958 GMP synthase C terminal domain 422 512 3.1E-42 T 29-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 195 3.2E-82 T 29-03-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CFE88_RS09295 d7bc706ecd11e7fedcfc343fbbcfeee7 513 Pfam PF03054 tRNA methyl transferase 220 249 2.0E-5 T 29-03-2018 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 Gene3D G3DSA:2.30.33.40 1 94 1.9E-34 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 SMART SM00883 1 93 4.8E-49 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 Hamap MF_00580 10 kDa chaperonin [groS]. 1 94 23.855 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 SUPERFAMILY SSF50129 1 94 1.41E-30 T 29-03-2018 IPR011032 GroES-like CFE88_RS01625 606904afb0edf838438471caee871ad0 94 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 1.6E-33 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 PRINTS PR00297 10kDa chaperonin signature 24 45 3.6E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 PRINTS PR00297 10kDa chaperonin signature 2 17 3.6E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 PRINTS PR00297 10kDa chaperonin signature 80 93 3.6E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 PRINTS PR00297 10kDa chaperonin signature 59 71 3.6E-27 T 29-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CFE88_RS01625 606904afb0edf838438471caee871ad0 94 ProSitePatterns PS00681 Chaperonins cpn10 signature. 2 26 - T 29-03-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 Gene3D G3DSA:3.30.70.260 370 446 4.3E-18 T 29-03-2018 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 SUPERFAMILY SSF55021 373 448 1.96E-20 T 29-03-2018 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 Gene3D G3DSA:3.40.1160.10 1 281 7.8E-52 T 29-03-2018 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 444 1.8E-81 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 SUPERFAMILY SSF53633 1 290 7.07E-65 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 PIRSF PIRSF000726 1 447 8.4E-79 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 SUPERFAMILY SSF55021 296 369 8.18E-13 T 29-03-2018 CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 Pfam PF13840 ACT domain 380 440 5.0E-7 T 29-03-2018 IPR027795 GATS-like ACT domain CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 Pfam PF00696 Amino acid kinase family 2 276 7.1E-40 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04590 a8709de7a37a4480b86829689a7c6124 458 Gene3D G3DSA:3.30.70.260 282 369 4.9E-19 T 29-03-2018 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.5E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.5E-16 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Hamap MF_00054_B Elongation factor G [fusA]. 6 690 107.891 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SUPERFAMILY SSF54211 478 598 2.3E-43 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SUPERFAMILY SSF54980 599 689 5.76E-31 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 180 3.9E-43 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SMART SM00838 599 686 1.9E-57 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SMART SM00889 479 597 1.0E-70 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Gene3D G3DSA:3.40.50.300 1 285 7.9E-65 T 29-03-2018 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Pfam PF03144 Elongation factor Tu domain 2 323 390 1.6E-13 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Gene3D G3DSA:2.40.30.10 286 399 5.0E-30 T 29-03-2018 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Pfam PF03764 Elongation factor G, domain IV 478 596 4.6E-46 T 29-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 691 0.0 T 29-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Pfam PF14492 Elongation Factor G, domain II 403 476 6.0E-33 T 29-03-2018 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Pfam PF00009 Elongation factor Tu GTP binding domain 8 280 1.2E-69 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Gene3D G3DSA:3.30.70.240 613 690 9.3E-33 T 29-03-2018 CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SUPERFAMILY SSF50447 263 403 2.39E-33 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SUPERFAMILY SSF54980 403 480 2.09E-25 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Gene3D G3DSA:3.30.230.10 491 612 6.7E-45 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 SUPERFAMILY SSF52540 6 280 1.24E-109 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Pfam PF00679 Elongation factor G C-terminus 599 685 2.0E-31 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS08535 22873f702e2087d7e8b1c5f5f0d581f9 693 Gene3D G3DSA:3.30.70.870 400 490 9.3E-34 T 29-03-2018 CFE88_RS04550 12f3e175109aa94944e3bb682f5410bd 49 Pfam PF00471 Ribosomal protein L33 3 49 9.8E-25 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS04550 12f3e175109aa94944e3bb682f5410bd 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 29-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS04550 12f3e175109aa94944e3bb682f5410bd 49 SUPERFAMILY SSF57829 2 49 1.53E-20 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CFE88_RS04550 12f3e175109aa94944e3bb682f5410bd 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 3.4E-22 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS04550 12f3e175109aa94944e3bb682f5410bd 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 20.116 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 SMART SM00434 12 466 5.0E-295 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 811 0.0 T 29-03-2018 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Gene3D G3DSA:2.120.10.90 501 828 2.3E-126 T 29-03-2018 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 473 4.4E-160 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 507 547 1.6E-10 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 613 657 5.5E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 556 605 7.6E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 662 707 2.1E-11 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 764 810 9.8E-11 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 713 754 1.9E-12 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 SUPERFAMILY SSF101904 501 820 1.57E-108 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 6 812 24.956 T 29-03-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Gene3D G3DSA:3.90.199.10 35 216 4.4E-86 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Gene3D G3DSA:1.10.268.10 346 488 1.9E-52 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 SUPERFAMILY SSF56719 31 488 1.44E-180 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CFE88_RS09725 9e90fba6c301991ca70fe41c2db77828 893 Gene3D G3DSA:3.30.1360.40 237 334 2.2E-35 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 Gene3D G3DSA:2.30.30.60 135 189 7.2E-12 T 29-03-2018 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 SUPERFAMILY SSF82689 196 284 3.27E-6 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 Pfam PF00924 Mechanosensitive ion channel 76 279 5.1E-36 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 Gene3D G3DSA:3.30.70.100 190 284 6.6E-7 T 29-03-2018 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 SUPERFAMILY SSF82861 35 118 1.27E-16 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CFE88_RS10040 ca397996a2a10252483d6cc6d08da24c 295 SUPERFAMILY SSF50182 120 188 7.19E-11 T 29-03-2018 IPR010920 LSM domain CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Gene3D G3DSA:2.170.190.11 51 147 4.9E-24 T 29-03-2018 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 SMART SM00852 186 324 9.7E-36 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 173 1.4E-40 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 SUPERFAMILY SSF63882 8 182 1.57E-52 T 29-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 SUPERFAMILY SSF53218 183 327 4.32E-39 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 182 320 1.1E-32 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Gene3D G3DSA:3.40.980.10 156 331 2.2E-50 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Gene3D G3DSA:2.40.340.10 334 410 4.5E-12 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 SUPERFAMILY SSF63867 333 408 3.79E-15 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Pfam PF03454 MoeA C-terminal region (domain IV) 337 407 1.6E-15 T 29-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00510 cede7ad7006eb82ac401f5c08f0ea838 419 Pfam PF00994 Probable molybdopterin binding domain 186 323 4.2E-26 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 29 139 1.5E-53 T 29-03-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 Pfam PF14489 QueF-like protein 63 141 9.2E-35 T 29-03-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 Gene3D G3DSA:3.30.1130.10 7 154 2.4E-42 T 29-03-2018 CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 166 70.369 T 29-03-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 PIRSF PIRSF027377 9 148 8.9E-64 T 29-03-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CFE88_RS07550 f56e003aa645084ac8c6a2b04bc72c58 166 SUPERFAMILY SSF55620 29 136 8.89E-28 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 191 202 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS02200 f230196966b8209b903015757dc42457 380 Gene3D G3DSA:1.25.40.70 264 347 1.2E-6 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Gene3D G3DSA:3.30.70.20 54 196 3.1E-4 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 6 311 42.402 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CFE88_RS02200 f230196966b8209b903015757dc42457 380 SUPERFAMILY SSF54862 167 254 7.53E-14 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 SUPERFAMILY SSF48371 288 374 3.02E-11 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Pfam PF13646 HEAT repeats 302 361 7.9E-8 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Pfam PF13484 4Fe-4S double cluster binding domain 191 253 1.6E-14 T 29-03-2018 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Pfam PF08331 Domain of unknown function (DUF1730) 60 138 7.8E-18 T 29-03-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 CFE88_RS02200 f230196966b8209b903015757dc42457 380 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 13 344 1.2E-122 T 29-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CFE88_RS02200 f230196966b8209b903015757dc42457 380 Gene3D G3DSA:3.30.70.20 197 254 3.1E-8 T 29-03-2018 CFE88_RS00125 61ef17fb70cbc8463239f5d956b1492c 299 Pfam PF07859 alpha/beta hydrolase fold 78 278 3.1E-34 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CFE88_RS00125 61ef17fb70cbc8463239f5d956b1492c 299 Gene3D G3DSA:3.40.50.1820 8 298 2.4E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00125 61ef17fb70cbc8463239f5d956b1492c 299 SUPERFAMILY SSF53474 75 292 1.51E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06795 1d52519de83d41f0db5b20be4c37942b 384 Gene3D G3DSA:3.50.50.60 196 379 1.5E-6 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06795 1d52519de83d41f0db5b20be4c37942b 384 Gene3D G3DSA:3.50.50.60 3 195 6.2E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06795 1d52519de83d41f0db5b20be4c37942b 384 SUPERFAMILY SSF51905 3 230 9.07E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06795 1d52519de83d41f0db5b20be4c37942b 384 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 6 254 2.4E-13 T 29-03-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 11 172 4.2E-47 T 29-03-2018 IPR017500 Phage infection protein, YhgE, N-terminal CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 728 929 2.2E-50 T 29-03-2018 IPR017501 Phage infection protein, YhgE, C-terminal CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Gene3D G3DSA:1.10.287.500 400 532 0.16 T 29-03-2018 CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Gene3D G3DSA:1.20.1170.10 656 792 2.5E-5 T 29-03-2018 CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Gene3D G3DSA:1.20.1480.30 533 615 5.3E-6 T 29-03-2018 CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Gene3D G3DSA:3.40.1710.10 48 214 1.5E-24 T 29-03-2018 CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Pfam PF12698 ABC-2 family transporter protein 30 203 2.0E-10 T 29-03-2018 CFE88_RS10810 044dcab4b9f74489c91acced1d044339 952 Pfam PF12698 ABC-2 family transporter protein 427 927 9.1E-12 T 29-03-2018 CFE88_RS04280 790a85ad106daede1c8db8d5ffbbc244 298 PIRSF PIRSF012524 4 290 1.0E-108 T 29-03-2018 IPR014464 Conserved virulence factor B CFE88_RS04280 790a85ad106daede1c8db8d5ffbbc244 298 Gene3D G3DSA:2.40.50.140 72 228 5.0E-6 T 29-03-2018 CFE88_RS04280 790a85ad106daede1c8db8d5ffbbc244 298 Gene3D G3DSA:1.10.10.10 229 288 9.0E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04280 790a85ad106daede1c8db8d5ffbbc244 298 Pfam PF13509 S1 domain 8 69 2.3E-5 T 29-03-2018 CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 SMART SM00422 5 74 1.6E-17 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 SUPERFAMILY SSF89082 161 249 1.01E-19 T 29-03-2018 IPR012925 TipAS antibiotic-recognition domain CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 Pfam PF13411 MerR HTH family regulatory protein 6 72 2.0E-16 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 Gene3D G3DSA:1.10.1660.10 3 152 2.5E-23 T 29-03-2018 CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 SUPERFAMILY SSF46955 5 114 2.45E-24 T 29-03-2018 IPR009061 Putative DNA-binding domain CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 Gene3D G3DSA:1.10.490.50 153 249 3.4E-8 T 29-03-2018 CFE88_RS08175 58e577cda7d68c702d19e6c06bee723d 250 Pfam PF07739 TipAS antibiotic-recognition domain 128 247 3.6E-17 T 29-03-2018 IPR012925 TipAS antibiotic-recognition domain CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 SUPERFAMILY SSF51735 141 298 5.67E-10 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 Gene3D G3DSA:3.40.50.720 209 327 0.029 T 29-03-2018 CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 Gene3D G3DSA:3.90.180.10 7 208 4.6E-19 T 29-03-2018 CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 Pfam PF00107 Zinc-binding dehydrogenase 224 295 1.5E-8 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 SUPERFAMILY SSF50129 27 175 3.09E-18 T 29-03-2018 IPR011032 GroES-like CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 132 4.7E-9 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS08490 91f813bc46eb9b236f44256979ee9315 343 Hamap MF_02069 Ribulose-5-phosphate reductase [tarJ]. 1 343 56.658 T 29-03-2018 IPR034710 Ribulose-5-phosphate reductase GO:0050256 CFE88_RS12610 c27f9b11f5798b6315bd19a8dab296ba 173 Gene3D G3DSA:1.10.10.10 28 120 5.0E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12610 c27f9b11f5798b6315bd19a8dab296ba 173 Pfam PF01051 Initiator Replication protein 1 111 3.1E-28 T 29-03-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CFE88_RS12610 c27f9b11f5798b6315bd19a8dab296ba 173 SUPERFAMILY SSF46785 18 114 1.33E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF04650 YSIRK type signal peptide 5 29 2.5E-7 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6277 6346 3.14E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4583 4638 2.82E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6026 6094 3.56E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7857 7910 4.29E-5 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5651 5718 1.7E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4769 4837 2.5E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5273 5340 6.8E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7915 7980 3.5E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4515 4581 1.9E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5901 5969 2.4E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8666 8722 7.5E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8036 8105 5.0E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9299 9369 2.2E-5 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5017 5102 5.9E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4894 4961 5.9E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7407 7478 2.5E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9046 9112 1.8E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8791 8860 4.7E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6406 6473 1.0E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6025 6095 6.1E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7283 7351 1.1E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5774 5844 1.6E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5146 5214 3.7E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7787 7856 1.9E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6530 6598 4.7E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8161 8233 1.4E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5399 5464 2.2E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6778 6849 3.1E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6906 6975 4.8E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5520 5592 1.3E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8916 8987 1.9E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4637 4711 5.3E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6657 6723 7.7E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8291 8359 1.1E-5 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7032 7099 2.0E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9151 9233 7.4E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6152 6221 8.4E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7658 7730 5.4E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7534 7602 3.5E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7155 7227 1.7E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6280 6347 4.2E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8544 8611 2.4E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6530 6597 1.78E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07564 Domain of Unknown Function (DUF1542) 9378 9450 2.8E-12 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07564 Domain of Unknown Function (DUF1542) 9532 9604 4.9E-10 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07564 Domain of Unknown Function (DUF1542) 9702 9775 4.2E-9 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07564 Domain of Unknown Function (DUF1542) 9455 9525 7.0E-10 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07564 Domain of Unknown Function (DUF1542) 9866 9937 5.7E-6 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7220 7278 2.6E-13 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8604 8662 1.9E-12 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 5836 5895 2.4E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 4703 4759 3.1E-14 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6465 6524 1.0E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6087 6146 6.8E-18 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 5206 5264 2.3E-13 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7596 7654 6.3E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8353 8410 5.8E-14 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 9108 9162 1.3E-10 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7974 8033 2.9E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 4449 4507 6.1E-11 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7722 7781 5.7E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 5082 5137 4.3E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6339 6398 8.4E-17 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8727 8782 1.2E-10 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6716 6774 2.0E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 5961 6020 9.6E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6590 6649 6.0E-14 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 5332 5391 2.0E-17 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6841 6900 2.7E-12 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 6213 6272 8.0E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8099 8158 1.9E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 4829 4888 1.6E-15 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8854 8910 4.3E-12 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 4575 4634 4.8E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7095 7152 1.3E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 4956 5014 9.5E-16 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 7345 7403 1.8E-13 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8979 9037 5.4E-12 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF01468 GA module 8481 8536 1.3E-14 T 29-03-2018 IPR002988 Protein G-related albumin-binding (GA) module GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3449 3530 4.1E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 4296 4380 8.2E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3972 4042 3.4E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 2783 2855 4.0E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3125 3194 2.0E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 4130 4212 7.9E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 2602 2685 2.9E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 4213 4295 4.6E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3282 3363 6.7E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3366 3448 7.5E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 4382 4466 2.1E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3803 3872 2.8E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 2957 3026 7.7E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5900 5968 9.73E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6780 6848 4.08E-13 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6222 6275 6.7E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8107 8161 1.26E-7 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3967 4035 2.4E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3881 3945 2.5E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 5396 5466 1.6E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 7410 7478 4.0E-14 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2950 3018 2.2E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3797 3865 3.2E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 8164 8232 5.2E-16 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 9298 9366 4.7E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2864 2931 5.8E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3290 3357 0.012 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 4304 4373 9.7E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 4140 4204 0.0019 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 6905 6975 1.2E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3034 3098 2.0E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 5522 5592 1.4E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2694 2760 4.3E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 9176 9241 2.0E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 5648 5718 8.8E-15 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 4053 4119 1.3E-4 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3457 3525 6.4E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 8415 8477 1.0E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3711 3778 2.1E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2610 2674 2.6E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 7787 7856 7.7E-15 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 4221 4287 0.0012 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2524 2592 8.0E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3374 3441 5.0E-4 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3542 3609 2.6E-4 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 2780 2848 8.7E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3627 3695 6.7E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3213 3271 4.8E-5 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Pfam PF07554 FIVAR domain 3120 3188 9.3E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6465 6524 3.3E-21 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8099 8158 3.9E-19 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 4703 4762 2.9E-19 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5206 5265 1.1E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6213 6272 2.2E-21 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8979 9038 1.2E-15 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8725 8784 5.1E-12 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7848 7907 3.3E-19 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7974 8033 5.7E-21 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5080 5139 1.0E-20 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5584 5643 4.6E-16 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6087 6146 4.6E-24 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7722 7781 1.0E-22 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5836 5895 2.5E-22 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7345 7404 3.9E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7093 7152 8.4E-23 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8603 8662 1.5E-15 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 4829 4888 2.3E-20 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8225 8284 9.6E-13 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5458 5517 1.6E-14 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 9233 9293 1.2E-11 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 4955 5014 4.7E-21 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5332 5391 6.8E-25 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6967 7026 9.1E-16 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8477 8536 8.9E-19 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6339 6398 3.0E-22 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 9106 9165 3.7E-11 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6715 6774 1.0E-20 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7219 7278 4.6E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 4448 4508 8.6E-10 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6590 6649 9.0E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7596 7655 4.2E-21 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 7470 7529 1.5E-13 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8852 8911 1.4E-13 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5710 5769 8.6E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 8351 8410 2.0E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 5961 6020 3.8E-20 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 6841 6900 8.2E-17 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SMART SM00844 4575 4634 5.1E-22 T 29-03-2018 IPR020840 Extracellular matrix-binding protein ebh, GA module CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4837 4891 4.5E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7353 7407 3.14E-6 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4639 4710 2.72E-13 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 TIGRFAM TIGR04264 hyperosmo_Ebh: hyperosmolarity resistance protein Ebh 193 2530 0.0 T 29-03-2018 IPR026361 Extracellular matrix-binding protein Ebh domain CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 9174 9240 1.67E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5396 5465 2.72E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8987 9041 1.36E-5 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5522 5591 6.07E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5271 5339 1.99E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6095 6149 3.14E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6598 6652 1.78E-7 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5088 5142 8.58E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7787 7855 1.36E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5144 5213 1.67E-13 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7982 8036 1.57E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5648 5717 1.15E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8038 8106 1.57E-14 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8790 8859 6.59E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7605 7658 1.67E-7 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 5 35 5.2E-9 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6474 6527 9.0E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 9043 9113 2.93E-9 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8486 8539 2.62E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 7603 7652 4.8E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 4962 5012 2.0E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 4582 4632 2.1E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 9113 9150 4.7E-4 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 5465 5515 3.5E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 8106 8155 3.2E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 7352 7402 8.6E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 7981 8031 1.0E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.10.8.40 7100 7149 4.3E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6403 6472 6.59E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6976 7029 4.5E-6 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4514 4582 2.2E-14 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6152 6220 4.92E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8163 8232 5.55E-17 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4767 4836 3.14E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 4043 4121 1.7E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7157 7226 1.26E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8667 8732 3.14E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5774 5843 1.36E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4460 4511 3.66E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6348 6401 1.05E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5718 5772 4.6E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8723 8790 0.0024 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8491 8543 2.0E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7861 7914 1.4E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6352 6405 6.3E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8992 9045 1.1E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4467 4514 3.1E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5597 5650 1.0E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5219 5272 2.1E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5345 5398 2.5E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6603 6656 1.5E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6226 6279 1.5E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7480 7533 2.2E-5 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6851 6905 2.2E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9234 9298 2.3E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6097 6151 7.8E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8611 8665 1.46E-5 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7032 7100 4.81E-13 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5019 5087 1.26E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 2686 2782 3.8E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3873 3971 1.4E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3027 3124 1.3E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 2856 2956 8.6E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.90 3702 3802 9.8E-13 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4711 4766 1.88E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8916 8986 2.2E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7660 7729 8.79E-13 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8541 8610 3.66E-9 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7410 7477 4.18E-14 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 9298 9366 1.15E-9 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7479 7532 2.93E-6 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8415 8482 3.56E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7535 7603 1.26E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6850 6903 7.95E-5 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.70 3195 3274 1.7E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.70 3625 3701 1.6E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.70 2511 2595 3.5E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.1270.70 3531 3612 1.7E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5214 5268 1.15E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6723 6777 4.29E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6654 6722 2.72E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7913 7981 1.36E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4964 5017 1.78E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 4894 4962 5.13E-15 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5592 5646 8.68E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7228 7281 6.8E-9 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5341 5394 5.86E-10 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5467 5521 7.74E-6 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7102 7155 1.15E-9 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7283 7352 3.24E-14 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8360 8413 7.53E-7 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 8289 8358 2.3E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5970 6023 3.35E-12 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 6905 6974 2.62E-16 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6474 6529 3.8E-12 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8234 8290 1.2E-5 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5103 5145 3.9E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9459 9534 1.8E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8360 8419 7.1E-8 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6977 7031 4.0E-7 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5846 5900 8.5E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4712 4768 4.2E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7731 7786 9.6E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 4838 4893 2.7E-11 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 9536 9593 0.19 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 7731 7784 2.62E-8 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 SUPERFAMILY SSF46997 5845 5899 2.62E-11 T 29-03-2018 IPR009063 Immunoglobulin/albumin-binding domain GO:0009405 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5719 5773 1.3E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8861 8915 3.9E-6 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 7228 7282 4.5E-9 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 8612 8665 9.4E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 6724 6777 1.5E-10 T 29-03-2018 CFE88_RS04025 6e4eb4b846242a2cda64fc9f4859ba10 10150 Gene3D G3DSA:1.20.5.420 5970 6024 6.3E-8 T 29-03-2018 CFE88_RS04885 40c8974763737c7338ad2c43da56451e 125 Pfam PF01381 Helix-turn-helix 36 71 4.5E-8 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS04885 40c8974763737c7338ad2c43da56451e 125 Gene3D G3DSA:1.10.260.40 1 125 1.4E-18 T 29-03-2018 CFE88_RS04885 40c8974763737c7338ad2c43da56451e 125 SUPERFAMILY SSF47413 3 76 1.86E-8 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS08350 932a4519455772b301b8ec146e83ca18 276 SUPERFAMILY SSF53613 4 267 2.18E-65 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS08350 932a4519455772b301b8ec146e83ca18 276 Gene3D G3DSA:3.40.1190.20 1 276 3.7E-51 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS08350 932a4519455772b301b8ec146e83ca18 276 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 260 9.0E-70 T 29-03-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS08350 932a4519455772b301b8ec146e83ca18 276 Pfam PF08543 Phosphomethylpyrimidine kinase 13 259 7.3E-76 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CFE88_RS00310 0f514d488878f008497cf47e62000650 248 Pfam PF02517 CAAX protease self-immunity 145 236 1.9E-13 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 SUPERFAMILY SSF52540 166 217 4.75E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 SUPERFAMILY SSF52540 258 314 4.75E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 SUPERFAMILY SSF52540 6 80 4.75E-13 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 Gene3D G3DSA:1.10.287.890 206 286 1.9E-26 T 29-03-2018 CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 9 305 28.42 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 Pfam PF01715 IPP transferase 42 290 5.4E-79 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 296 1.7E-94 T 29-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 SUPERFAMILY SSF52540 9 117 6.53E-20 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04930 0110f84165e1d812f24cc7261d8c8bce 332 Gene3D G3DSA:3.40.50.300 5 203 4.5E-66 T 29-03-2018 CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 148 156 - T 29-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 Gene3D G3DSA:3.40.50.300 219 505 1.6E-45 T 29-03-2018 CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 Gene3D G3DSA:3.40.50.300 3 218 5.4E-59 T 29-03-2018 CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 SMART SM00490 254 335 6.5E-34 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 Pfam PF00271 Helicase conserved C-terminal domain 226 335 2.1E-30 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 Pfam PF00270 DEAD/DEAH box helicase 26 192 4.2E-51 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 SMART SM00487 21 218 6.1E-60 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 SUPERFAMILY SSF52540 69 356 3.58E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01365 4822e180ac906f555b9343f80736357c 509 Hamap MF_01493 DEAD-box ATP-dependent RNA helicase CshA [cshA]. 2 508 42.752 T 29-03-2018 IPR030880 DEAD-box ATP-dependent RNA helicase CshA GO:0004004|GO:0005524|GO:0010501 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 279 2.7E-67 T 29-03-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 SUPERFAMILY SSF53223 2 121 6.52E-40 T 29-03-2018 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 Gene3D G3DSA:3.40.50.720 140 263 8.0E-42 T 29-03-2018 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 Gene3D G3DSA:3.40.50.10860 11 139 2.8E-50 T 29-03-2018 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 8.3E-79 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 SUPERFAMILY SSF51735 122 277 1.24E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 2.0E-40 T 29-03-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS06035 f72aecdb5c7015a45af5c315f1652507 286 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 38.009 T 29-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 CFE88_RS01675 32014401b0bf067f00f83e134a191462 125 Gene3D G3DSA:1.10.10.10 1 90 1.2E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01675 32014401b0bf067f00f83e134a191462 125 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 2.1E-16 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS01675 32014401b0bf067f00f83e134a191462 125 SMART SM00345 13 76 6.3E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS01675 32014401b0bf067f00f83e134a191462 125 SUPERFAMILY SSF46785 6 80 2.37E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Gene3D G3DSA:3.40.50.360 34 234 6.3E-43 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Gene3D G3DSA:2.40.30.10 235 454 6.2E-46 T 29-03-2018 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 SUPERFAMILY SSF63380 242 460 1.57E-61 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 509 520 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 540 556 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 471 490 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 282 292 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 434 443 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 401 408 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 496 505 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 563 571 5.7E-26 T 29-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Pfam PF00175 Oxidoreductase NAD-binding domain 472 578 3.8E-18 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Pfam PF00667 FAD binding domain 244 437 1.1E-27 T 29-03-2018 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 6 614 5.2E-239 T 29-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PIRSF PIRSF000207 1 614 7.1E-282 T 29-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Pfam PF00258 Flavodoxin 79 210 2.9E-30 T 29-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00369 Flavodoxin signature 158 168 2.9E-15 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00369 Flavodoxin signature 182 201 2.9E-15 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00369 Flavodoxin signature 126 137 2.9E-15 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 PRINTS PR00369 Flavodoxin signature 78 91 2.9E-15 T 29-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 SUPERFAMILY SSF52343 459 614 4.98E-49 T 29-03-2018 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 Gene3D G3DSA:3.40.50.80 457 614 4.8E-36 T 29-03-2018 CFE88_RS11215 0dc455d6cab69b520566d9f6111e2485 614 SUPERFAMILY SSF52218 75 218 1.36E-47 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS05030 3e21216b341bb4637865bd67d7650eac 193 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 82 1.1E-15 T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CFE88_RS05030 3e21216b341bb4637865bd67d7650eac 193 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 188 1.2E-54 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CFE88_RS05030 3e21216b341bb4637865bd67d7650eac 193 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 60 82 - T 29-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CFE88_RS05030 3e21216b341bb4637865bd67d7650eac 193 PIRSF PIRSF000847 1 193 1.8E-50 T 29-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CFE88_RS00525 96b1c8ec61205058bc2b559453d3f232 77 SUPERFAMILY SSF54285 1 77 2.04E-16 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CFE88_RS00525 96b1c8ec61205058bc2b559453d3f232 77 Gene3D G3DSA:3.10.20.30 1 77 7.0E-19 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS00525 96b1c8ec61205058bc2b559453d3f232 77 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 1 77 1.1E-23 T 29-03-2018 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 CFE88_RS00525 96b1c8ec61205058bc2b559453d3f232 77 Pfam PF02597 ThiS family 3 77 3.2E-16 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 100 113 - T 29-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 SUPERFAMILY SSF51735 181 413 6.64E-77 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 181 412 8.3E-76 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 172 194 1.1E-29 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 340 351 1.1E-29 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 92 106 1.1E-29 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 214 234 1.1E-29 T 29-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 PIRSF PIRSF000185 2 414 3.4E-169 T 29-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 SMART SM00839 183 412 7.1E-95 T 29-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 Gene3D G3DSA:3.40.50.720 181 414 2.8E-74 T 29-03-2018 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 36 162 8.5E-56 T 29-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 SUPERFAMILY SSF53223 5 183 3.84E-66 T 29-03-2018 CFE88_RS06730 72ce1a02eb29ad20832e47b9461366ed 414 Gene3D G3DSA:3.40.50.10860 33 167 2.4E-51 T 29-03-2018 CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 Pfam PF03602 Conserved hypothetical protein 95 1 173 6.8E-53 T 29-03-2018 CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 PIRSF PIRSF004553 1 178 1.9E-46 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 SUPERFAMILY SSF53335 1 170 3.91E-43 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 115 121 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 176 1.2E-49 T 29-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CFE88_RS05720 30b9cde57fcbf67e1db48a85ab5a37ee 180 Gene3D G3DSA:3.40.50.150 1 180 3.0E-29 T 29-03-2018 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 Gene3D G3DSA:2.40.10.10 398 507 1.6E-29 T 29-03-2018 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 SMART SM00228 510 596 1.0E-4 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 SUPERFAMILY SSF50156 491 605 2.63E-13 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 553 565 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 397 421 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 355 375 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 441 458 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 463 480 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 PRINTS PR00834 HtrA/DegQ protease family signature 334 346 4.4E-22 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 SUPERFAMILY SSF50494 287 505 3.21E-45 T 29-03-2018 IPR009003 Peptidase S1, PA clan CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 Gene3D G3DSA:2.30.42.10 508 606 9.8E-18 T 29-03-2018 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 Pfam PF13365 Trypsin-like peptidase domain 322 470 1.3E-28 T 29-03-2018 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 Pfam PF13180 PDZ domain 534 605 7.7E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS06255 3f63367b786d41de99b9e5928ab469b2 606 Gene3D G3DSA:2.40.10.10 281 397 1.7E-21 T 29-03-2018 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 185 6.6E-20 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Gene3D G3DSA:3.30.70.870 297 376 8.6E-27 T 29-03-2018 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 SMART SM00838 407 495 4.3E-5 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Gene3D G3DSA:3.30.70.240 398 558 6.2E-28 T 29-03-2018 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Pfam PF00679 Elongation factor G C-terminus 408 495 1.3E-23 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 TIGRFAM TIGR01393 lepA: elongation factor 4 12 605 0.0 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Gene3D G3DSA:2.40.30.10 197 296 5.3E-27 T 29-03-2018 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 SUPERFAMILY SSF54980 408 503 2.21E-26 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 PRINTS PR00315 GTP-binding elongation factor signature 15 28 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 PRINTS PR00315 GTP-binding elongation factor signature 83 93 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 PRINTS PR00315 GTP-binding elongation factor signature 135 144 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 PRINTS PR00315 GTP-binding elongation factor signature 99 110 4.0E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 SUPERFAMILY SSF54980 301 379 3.31E-18 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Gene3D G3DSA:3.40.50.300 8 194 2.6E-37 T 29-03-2018 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Pfam PF03144 Elongation factor Tu domain 2 214 284 2.0E-11 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Pfam PF00009 Elongation factor Tu GTP binding domain 11 190 2.1E-53 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Pfam PF06421 GTP-binding protein LepA C-terminus 497 603 8.0E-49 T 29-03-2018 IPR013842 GTP-binding protein LepA, C-terminal CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 SUPERFAMILY SSF52540 5 238 7.09E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03330 eab515d21d7b77ef4992a9f88b590961 607 Hamap MF_00071 Elongation factor 4 [lepA]. 1 607 303.151 T 29-03-2018 IPR006297 Elongation factor 4 GO:0005525 CFE88_RS07985 cca549ed4cc21776383ebe33282fe4b6 265 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07985 cca549ed4cc21776383ebe33282fe4b6 265 SMART SM00382 28 217 2.4E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07985 cca549ed4cc21776383ebe33282fe4b6 265 Pfam PF00005 ABC transporter 20 167 4.2E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07985 cca549ed4cc21776383ebe33282fe4b6 265 Gene3D G3DSA:3.40.50.300 2 237 3.6E-60 T 29-03-2018 CFE88_RS07985 cca549ed4cc21776383ebe33282fe4b6 265 SUPERFAMILY SSF52540 4 230 4.51E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 Gene3D G3DSA:3.40.50.300 1 241 2.3E-79 T 29-03-2018 CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 Pfam PF00005 ABC transporter 19 167 2.1E-37 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 SMART SM00382 28 215 1.9E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 SUPERFAMILY SSF52540 3 237 3.04E-84 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 PIRSF PIRSF039085 1 242 2.2E-118 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CFE88_RS02195 cba8c6f05ca6cfce19a693407d56540c 242 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 332 358 2.1E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 223 240 2.1E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 147 160 2.1E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 171 199 2.1E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 241 257 2.1E-47 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 PIRSF PIRSF000110 1 493 1.3E-182 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 SUPERFAMILY SSF55347 186 490 5.89E-111 T 29-03-2018 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 Gene3D G3DSA:3.30.360.10 193 492 8.4E-121 T 29-03-2018 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 491 81.769 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 Gene3D G3DSA:3.40.50.720 7 192 1.1E-66 T 29-03-2018 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 194 489 1.7E-112 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 491 1.0E-189 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 191 3.1E-60 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS03740 49218f32451aaf4b6e1aef23960cc218 494 SUPERFAMILY SSF51735 7 194 2.36E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 SUPERFAMILY SSF51726 388 741 5.1E-107 T 29-03-2018 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 PIRSF PIRSF000382 3 747 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 6 310 4.3E-110 T 29-03-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 415 737 3.6E-138 T 29-03-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 9 742 0.0 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 Gene3D G3DSA:3.20.20.210 379 743 4.6E-113 T 29-03-2018 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 4 742 32.444 T 29-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 Gene3D G3DSA:3.20.20.210 4 378 1.8E-110 T 29-03-2018 CFE88_RS09525 982e904b3e990b18deb8178f00018319 748 SUPERFAMILY SSF51726 6 367 6.54E-88 T 29-03-2018 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 SUPERFAMILY SSF52540 8 142 2.39E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 PIRSF PIRSF035805 5 199 5.1E-67 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 174 187 - T 29-03-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 SUPERFAMILY SSF57716 142 194 3.17E-15 T 29-03-2018 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 Hamap MF_00124 Thymidine kinase [tdk]. 7 190 37.39 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 Gene3D G3DSA:3.30.60.20 142 199 2.4E-18 T 29-03-2018 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 Gene3D G3DSA:3.40.50.300 7 141 1.7E-47 T 29-03-2018 CFE88_RS01175 e812b5da893fd4149a09e4329799c54b 199 Pfam PF00265 Thymidine kinase 8 187 4.2E-60 T 29-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CFE88_RS05230 fefb5925fff981f659fc4b4ec18022e1 866 Pfam PF09586 Bacterial membrane protein YfhO 12 840 1.6E-166 T 29-03-2018 IPR018580 Uncharacterised protein family YfhO CFE88_RS07015 6c0b50a9a6f22678de1ddf1bd89f08bf 117 Pfam PF03960 ArsC family 7 113 3.6E-13 T 29-03-2018 IPR006660 Arsenate reductase-like CFE88_RS07015 6c0b50a9a6f22678de1ddf1bd89f08bf 117 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 116 5.7E-42 T 29-03-2018 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS07015 6c0b50a9a6f22678de1ddf1bd89f08bf 117 SUPERFAMILY SSF52833 2 116 1.75E-32 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS07015 6c0b50a9a6f22678de1ddf1bd89f08bf 117 Gene3D G3DSA:3.40.30.10 1 116 5.5E-34 T 29-03-2018 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 PIRSF PIRSF001467 6 125 5.6E-43 T 29-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 PIRSF PIRSF001467 146 197 3.1E-9 T 29-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 SUPERFAMILY SSF50891 148 195 3.36E-58 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 SUPERFAMILY SSF50891 18 119 3.36E-58 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 Gene3D G3DSA:2.40.100.10 2 197 6.6E-65 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 4.6E-20 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 4.6E-20 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 31 46 4.6E-20 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 52 69 - T 29-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 CFE88_RS06750 4da1e0c24705833af06f7b875a4240dd 197 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 18 194 7.3E-47 T 29-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Gene3D G3DSA:2.40.50.140 1 111 5.0E-28 T 29-03-2018 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 SUPERFAMILY SSF55681 118 298 3.45E-111 T 29-03-2018 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 SUPERFAMILY SSF55681 427 587 3.45E-111 T 29-03-2018 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 3 587 35.069 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Pfam PF02938 GAD domain 314 408 8.1E-29 T 29-03-2018 IPR029351 GAD domain Reactome: R-HSA-379726 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 SUPERFAMILY SSF50249 3 112 5.71E-33 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 SUPERFAMILY SSF55261 295 422 1.01E-40 T 29-03-2018 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 3 585 2.2E-256 T 29-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 5.8E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 521 535 5.8E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 5.8E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 477 493 5.8E-27 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 560 1.4E-112 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Gene3D G3DSA:3.30.930.10 137 356 1.5E-57 T 29-03-2018 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Gene3D G3DSA:3.30.930.10 370 588 1.8E-57 T 29-03-2018 CFE88_RS03120 23356429d8dfd3a2f5b19b47a020a282 588 Pfam PF01336 OB-fold nucleic acid binding domain 20 105 2.9E-18 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 222 6.4E-43 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 SMART SM00363 1 59 2.5E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 Pfam PF01479 S4 domain 1 44 2.9E-13 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 Gene3D G3DSA:3.30.2350.10 73 227 2.5E-34 T 29-03-2018 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 SUPERFAMILY SSF55174 1 58 7.26E-14 T 29-03-2018 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 Gene3D G3DSA:3.10.290.10 1 72 4.3E-20 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 Pfam PF00849 RNA pseudouridylate synthase 62 189 2.3E-17 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 SUPERFAMILY SSF55120 61 224 4.8E-41 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS02580 556c1581688daa255bcfaba69f33fb8d 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 Gene3D G3DSA:3.40.630.10 1 393 1.5E-58 T 29-03-2018 CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 SUPERFAMILY SSF53187 284 376 5.03E-61 T 29-03-2018 CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 SUPERFAMILY SSF53187 5 184 5.03E-61 T 29-03-2018 CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 337 1.6E-58 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 PIRSF PIRSF037226 1 394 3.6E-165 T 29-03-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 Pfam PF07687 Peptidase dimerisation domain 174 265 8.8E-8 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 SUPERFAMILY SSF55031 171 276 8.11E-19 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS01110 88dd279d3f0d91074c28c254f18d60f4 394 Pfam PF01546 Peptidase family M20/M25/M40 85 365 2.1E-6 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 2 278 34.462 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 SUPERFAMILY SSF55060 160 280 3.84E-32 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 Pfam PF08544 GHMP kinases C terminal 198 269 7.2E-13 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 Gene3D G3DSA:3.30.70.890 160 281 2.4E-27 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 SUPERFAMILY SSF54211 1 157 1.52E-44 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 Gene3D G3DSA:3.30.230.10 3 158 1.9E-47 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 282 6.3E-86 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 PIRSF PIRSF010376 1 281 9.4E-95 T 29-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CFE88_RS08890 c9dca38c54ab8d08b9c2fd26a9ed998c 282 Pfam PF00288 GHMP kinases N terminal domain 86 141 1.4E-10 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CFE88_RS12060 6604b64e2bf019de4aa26c96470c0364 511 Pfam PF00144 Beta-lactamase 44 360 6.6E-69 T 29-03-2018 IPR001466 Beta-lactamase-related CFE88_RS12060 6604b64e2bf019de4aa26c96470c0364 511 SUPERFAMILY SSF56601 38 373 8.62E-83 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12060 6604b64e2bf019de4aa26c96470c0364 511 Gene3D G3DSA:3.40.710.10 30 373 4.2E-89 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 SUPERFAMILY SSF103025 4 280 1.57E-91 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Gene3D G3DSA:4.10.1250.10 236 279 2.5E-10 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 257 4.3E-93 T 29-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Gene3D G3DSA:3.30.1360.120 5 135 3.0E-33 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 359 1.6E-132 T 29-03-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 PIRSF PIRSF006487 1 362 2.6E-99 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Gene3D G3DSA:2.40.30.110 281 363 3.0E-21 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 SUPERFAMILY SSF101790 273 358 1.46E-22 T 29-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Gene3D G3DSA:3.30.1360.120 136 235 1.3E-24 T 29-03-2018 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 266 357 1.0E-24 T 29-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CFE88_RS03575 63112e6de4a71023bd87c80d9883e305 363 Hamap MF_00259 Aminomethyltransferase [gcvT]. 4 363 45.355 T 29-03-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.7E-7 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 Gene3D G3DSA:3.40.190.10 171 240 1.6E-6 T 29-03-2018 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 SUPERFAMILY SSF53850 88 283 4.83E-23 T 29-03-2018 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 Gene3D G3DSA:1.10.10.10 1 89 3.3E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07875 be79490ea82fbada575e46269923b525 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 4.0E-14 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS07875 be79490ea82fbada575e46269923b525 284 Pfam PF03466 LysR substrate binding domain 88 280 2.7E-24 T 29-03-2018 IPR005119 LysR, substrate-binding CFE88_RS07875 be79490ea82fbada575e46269923b525 284 SUPERFAMILY SSF46785 1 110 4.61E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07875 be79490ea82fbada575e46269923b525 284 Gene3D G3DSA:3.40.190.10 90 170 2.9E-9 T 29-03-2018 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 4.8E-31 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 Gene3D G3DSA:3.30.1550.10 3 71 2.1E-36 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 3.8E-26 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 SUPERFAMILY SSF46906 67 139 5.1E-28 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 SUPERFAMILY SSF54747 3 72 3.14E-30 T 29-03-2018 IPR020784 Ribosomal protein L11, N-terminal CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 SMART SM00649 9 140 4.4E-88 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 1.0E-16 T 29-03-2018 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 139 2.6E-65 T 29-03-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 140 31.159 T 29-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CFE88_RS08590 44fdb74c3504888a4b3601638048ee5a 140 Gene3D G3DSA:1.10.10.250 72 140 4.4E-25 T 29-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 300 309 1.4E-24 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 498 512 1.4E-24 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 185 203 1.4E-24 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 1.4E-24 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 382 398 1.4E-24 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Gene3D G3DSA:2.70.20.10 345 450 3.5E-19 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 SMART SM00493 2 125 2.1E-17 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Gene3D G3DSA:1.10.460.10 451 636 1.9E-31 T 29-03-2018 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Gene3D G3DSA:1.10.460.10 158 337 1.3E-36 T 29-03-2018 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 SUPERFAMILY SSF56712 2 584 3.53E-166 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Pfam PF01751 Toprim domain 4 133 5.3E-17 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Gene3D G3DSA:3.40.50.140 2 153 1.1E-41 T 29-03-2018 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 698 1.2E-199 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 SMART SM00437 257 535 1.8E-70 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 624 61.325 T 29-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 SMART SM00436 125 215 2.0E-34 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Pfam PF01131 DNA topoisomerase 152 570 2.2E-107 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 294 309 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CFE88_RS00595 1c276ae38711f24309878128df5df7df 711 Gene3D G3DSA:2.20.25.10 637 673 0.017 T 29-03-2018 CFE88_RS10775 13ebe6b5cb038f93d2e30e3c53c8f6fc 390 Gene3D G3DSA:1.20.1250.20 4 195 4.4E-34 T 29-03-2018 CFE88_RS10775 13ebe6b5cb038f93d2e30e3c53c8f6fc 390 SUPERFAMILY SSF103473 5 385 4.97E-61 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10775 13ebe6b5cb038f93d2e30e3c53c8f6fc 390 Gene3D G3DSA:1.20.1250.20 202 390 4.5E-18 T 29-03-2018 CFE88_RS10775 13ebe6b5cb038f93d2e30e3c53c8f6fc 390 Pfam PF07690 Major Facilitator Superfamily 15 351 1.8E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS10805 8762e859d250466070e879b3e8c1f4e2 655 Gene3D G3DSA:1.10.530.10 353 509 1.1E-36 T 29-03-2018 CFE88_RS10805 8762e859d250466070e879b3e8c1f4e2 655 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 366 504 4.0E-20 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS10805 8762e859d250466070e879b3e8c1f4e2 655 SMART SM00047 349 509 6.7E-42 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS10805 8762e859d250466070e879b3e8c1f4e2 655 SUPERFAMILY SSF54001 537 632 1.08E-17 T 29-03-2018 CFE88_RS10805 8762e859d250466070e879b3e8c1f4e2 655 Pfam PF05257 CHAP domain 543 629 2.3E-16 T 29-03-2018 IPR007921 CHAP domain CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 307 3.2E-81 T 29-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 Gene3D G3DSA:3.40.50.720 1 177 9.1E-24 T 29-03-2018 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 Gene3D G3DSA:1.10.1040.10 179 310 4.2E-32 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 181 304 6.3E-32 T 29-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 SUPERFAMILY SSF48179 180 304 1.19E-31 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 152 4.4E-38 T 29-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS12050 3f61c22c6508eb81fbbe3284a50a3fc4 310 SUPERFAMILY SSF51735 1 167 9.05E-19 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 322 2.2E-114 T 29-03-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 323 33.382 T 29-03-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 Gene3D G3DSA:3.30.360.10 137 306 3.0E-60 T 29-03-2018 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 135 309 7.1E-47 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 SUPERFAMILY SSF55347 125 310 3.93E-65 T 29-03-2018 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 PIRSF PIRSF000148 1 327 1.1E-110 T 29-03-2018 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 SMART SM00859 3 119 1.3E-27 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 Gene3D G3DSA:3.40.50.720 1 136 1.0E-27 T 29-03-2018 CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 SUPERFAMILY SSF51735 1 152 4.93E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04265 3be70da1d83bbdf115791ac3d54c49ac 329 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 115 8.4E-28 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Gene3D G3DSA:3.30.450.20 35 180 1.1E-10 T 29-03-2018 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Pfam PF00989 PAS fold 266 368 9.4E-9 T 29-03-2018 IPR013767 PAS fold GO:0006355 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Pfam PF00512 His Kinase A (phospho-acceptor) domain 378 443 1.6E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SMART SM00388 377 444 1.2E-21 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SUPERFAMILY SSF55874 433 601 5.76E-44 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 6.1E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 6.1E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 6.1E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 6.1E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Gene3D G3DSA:3.30.565.10 451 602 2.2E-41 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SUPERFAMILY SSF47384 362 443 2.75E-20 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 377 1.1E-9 T 29-03-2018 IPR000014 PAS domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SUPERFAMILY SSF158472 206 255 7.98E-10 T 29-03-2018 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Gene3D G3DSA:3.30.450.20 251 373 7.7E-21 T 29-03-2018 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SMART SM00304 206 258 2.2E-14 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SUPERFAMILY SSF103190 73 182 5.89E-6 T 29-03-2018 IPR029151 Periplasmic sensor domain-like CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SMART SM00387 488 602 1.9E-38 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 489 601 2.8E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Pfam PF00672 HAMP domain 206 254 9.8E-11 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 Gene3D G3DSA:1.10.287.130 374 440 8.0E-19 T 29-03-2018 CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SUPERFAMILY SSF55785 254 369 2.62E-11 T 29-03-2018 IPR000014 PAS domain CFE88_RS09805 09425705eb53a85eaf663fb0865f7d5d 610 SMART SM00091 265 330 4.4E-6 T 29-03-2018 IPR000014 PAS domain CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 SUPERFAMILY SSF143800 1 80 2.9E-24 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 Pfam PF01197 Ribosomal protein L31 1 79 9.4E-28 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 27.905 T 29-03-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 8.3E-20 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 PRINTS PR01249 Ribosomal protein L31 signature 60 78 6.0E-19 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 PRINTS PR01249 Ribosomal protein L31 signature 45 60 6.0E-19 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS01170 967d28cce79bf73af3db1c3b139df276 85 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.0E-19 T 29-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 Gene3D G3DSA:3.40.220.10 1 155 2.3E-10 T 29-03-2018 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 145 3.3E-17 T 29-03-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 SUPERFAMILY SSF53187 173 491 2.04E-104 T 29-03-2018 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 Gene3D G3DSA:3.40.630.10 163 491 5.4E-114 T 29-03-2018 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 PRINTS PR00481 Cytosol aminopeptidase signature 254 271 1.9E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 PRINTS PR00481 Cytosol aminopeptidase signature 363 378 1.9E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 PRINTS PR00481 Cytosol aminopeptidase signature 313 334 1.9E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 PRINTS PR00481 Cytosol aminopeptidase signature 335 355 1.9E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 PRINTS PR00481 Cytosol aminopeptidase signature 276 297 1.9E-46 T 29-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 SUPERFAMILY SSF52949 1 175 1.82E-27 T 29-03-2018 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 339 346 - T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CFE88_RS06810 cb979abe917e2d82a2b6416f1b92fa9c 493 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 177 484 5.5E-102 T 29-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CFE88_RS08435 b04ca64da95220eaf6e267e1d28aafb3 500 Gene3D G3DSA:3.40.50.2000 313 484 1.1E-29 T 29-03-2018 CFE88_RS08435 b04ca64da95220eaf6e267e1d28aafb3 500 SUPERFAMILY SSF53756 236 497 5.18E-42 T 29-03-2018 CFE88_RS08435 b04ca64da95220eaf6e267e1d28aafb3 500 Pfam PF00534 Glycosyl transferases group 1 324 473 2.1E-31 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS08405 9e7740b3e3a697d07ebe933bbb4b3c7e 122 SUPERFAMILY SSF89442 2 122 4.71E-50 T 29-03-2018 IPR014934 Protein of unknown function DUF1806 CFE88_RS08405 9e7740b3e3a697d07ebe933bbb4b3c7e 122 Gene3D G3DSA:2.70.180.10 4 120 9.2E-47 T 29-03-2018 IPR014934 Protein of unknown function DUF1806 CFE88_RS08405 9e7740b3e3a697d07ebe933bbb4b3c7e 122 Pfam PF08830 Protein of unknown function (DUF1806) 6 120 4.7E-48 T 29-03-2018 IPR014934 Protein of unknown function DUF1806 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 SUPERFAMILY SSF51569 1 289 3.77E-84 T 29-03-2018 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 PIRSF PIRSF001365 1 294 2.2E-84 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 Pfam PF00701 Dihydrodipicolinate synthetase family 5 288 2.8E-78 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 287 1.3E-86 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 29-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 3.7E-30 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 3.7E-30 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 3.7E-30 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 3.7E-30 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 4 288 53.514 T 29-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 Gene3D G3DSA:3.20.20.70 1 294 8.3E-82 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS04260 5234c02f109029e539560893535f6f64 294 SMART SM01130 4 290 1.3E-108 T 29-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 PIRSF PIRSF005900 1 148 3.9E-52 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 Gene3D G3DSA:1.20.1260.10 1 148 1.4E-48 T 29-03-2018 IPR012347 Ferritin-related CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 Pfam PF00210 Ferritin-like domain 9 147 1.3E-33 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 124 142 1.0E-14 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 29 45 1.0E-14 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 53 69 1.0E-14 T 29-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 SUPERFAMILY SSF47240 4 148 6.4E-50 T 29-03-2018 IPR009078 Ferritin-like superfamily CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 ProSitePatterns PS00818 Dps protein family signature 1. 29 45 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 CFE88_RS01075 bbb521f56621153508f85256a0a769e5 148 ProSitePatterns PS00819 Dps protein family signature 2. 55 69 - T 29-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 CFE88_RS07510 3ad208201cd90a5c66159ecc6f8374c3 259 SMART SM00382 26 213 2.2E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07510 3ad208201cd90a5c66159ecc6f8374c3 259 SUPERFAMILY SSF52540 2 225 1.82E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07510 3ad208201cd90a5c66159ecc6f8374c3 259 Gene3D G3DSA:3.40.50.300 1 237 3.4E-59 T 29-03-2018 CFE88_RS07510 3ad208201cd90a5c66159ecc6f8374c3 259 Pfam PF00005 ABC transporter 17 164 2.2E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10530 e1a33ecbe2b8f716682ba607ed4dd4d9 300 TIGRFAM TIGR00688 rarD: protein RarD 6 262 2.1E-64 T 29-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 CFE88_RS10530 e1a33ecbe2b8f716682ba607ed4dd4d9 300 SUPERFAMILY SSF103481 44 149 2.75E-8 T 29-03-2018 CFE88_RS10530 e1a33ecbe2b8f716682ba607ed4dd4d9 300 SUPERFAMILY SSF103481 192 288 5.36E-11 T 29-03-2018 CFE88_RS10530 e1a33ecbe2b8f716682ba607ed4dd4d9 300 Pfam PF00892 EamA-like transporter family 158 286 1.3E-9 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CFE88_RS10530 e1a33ecbe2b8f716682ba607ed4dd4d9 300 Pfam PF00892 EamA-like transporter family 7 148 4.1E-16 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 Pfam PF00248 Aldo/keto reductase family 23 261 2.2E-52 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PRINTS PR00069 Aldo-keto reductase signature 36 60 1.2E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PRINTS PR00069 Aldo-keto reductase signature 92 110 1.2E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PRINTS PR00069 Aldo-keto reductase signature 124 141 1.2E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PRINTS PR00069 Aldo-keto reductase signature 158 187 1.2E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.2E-50 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 PIRSF PIRSF000097 1 274 3.5E-88 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 SUPERFAMILY SSF51430 6 266 5.24E-92 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS07695 6004d346874a845712c005a0d20f6e0d 279 Gene3D G3DSA:3.20.20.100 2 278 2.6E-96 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 Hamap MF_01201 Alanine racemase. 6 369 31.964 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 Pfam PF01168 Alanine racemase, N-terminal domain 13 229 8.1E-60 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 SUPERFAMILY SSF50621 239 375 2.72E-48 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 TIGRFAM TIGR00492 alr: alanine racemase 8 368 4.5E-106 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 36 46 - T 29-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 Gene3D G3DSA:3.20.20.10 6 226 2.3E-42 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 SUPERFAMILY SSF51419 13 243 4.06E-57 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 Pfam PF00842 Alanine racemase, C-terminal domain 246 368 4.1E-42 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 SMART SM01005 244 369 3.9E-62 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 129 141 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 297 314 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 351 364 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 31 47 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 164 175 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 260 275 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 67 85 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 202 229 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 PRINTS PR00992 Alanine racemase signature 277 292 4.6E-59 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS01390 b045fc4b0598233483d9397e2866079a 382 Gene3D G3DSA:2.40.37.10 227 378 1.5E-53 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 Pfam PF12848 ABC transporter 147 205 1.3E-10 T 29-03-2018 IPR032781 ABC-transporter extension domain CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 SUPERFAMILY SSF52540 267 470 8.54E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 SUPERFAMILY SSF52540 9 166 6.0E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 Gene3D G3DSA:3.40.50.300 8 246 7.6E-38 T 29-03-2018 CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 SMART SM00382 297 458 4.4E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 SMART SM00382 29 153 6.6E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 Gene3D G3DSA:3.40.50.300 247 494 2.0E-42 T 29-03-2018 CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 Pfam PF00005 ABC transporter 24 62 6.2E-8 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS12685 d5767242b571560b1308f14eec337a94 522 Pfam PF00005 ABC transporter 291 413 5.5E-15 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Gene3D G3DSA:1.10.1200.70 333 420 6.1E-21 T 29-03-2018 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Gene3D G3DSA:3.40.50.720 161 313 2.2E-19 T 29-03-2018 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 PIRSF PIRSF000445 1 434 4.2E-141 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 SUPERFAMILY SSF51735 162 315 6.5E-32 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 417 27.633 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 324 418 1.5E-20 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 29-03-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 305 1.1E-42 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 SUPERFAMILY SSF69075 321 420 2.22E-13 T 29-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 2.9E-42 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 SUPERFAMILY SSF69742 1 158 4.84E-44 T 29-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS02950 8f93fbd9c869c28ea8360da46e66c778 448 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 5 420 4.9E-135 T 29-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 SMART SM00852 4 171 5.0E-34 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 381 106.111 T 29-03-2018 IPR008135 Competence-induced protein CinA CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 Gene3D G3DSA:2.30.30.100 274 372 0.005 T 29-03-2018 CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 PIRSF PIRSF006728 1 381 1.9E-112 T 29-03-2018 IPR008135 Competence-induced protein CinA CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 Pfam PF00994 Probable molybdopterin binding domain 5 168 1.3E-31 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 SUPERFAMILY SSF53218 1 203 1.02E-36 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 2 301 1.2E-83 T 29-03-2018 IPR008135 Competence-induced protein CinA CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 Gene3D G3DSA:3.40.980.10 1 172 3.2E-42 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS05025 a00311dae1d46ade60bacac95094fc11 381 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 166 2.3E-28 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 665 682 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 262 281 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 118 138 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 415 429 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 89 103 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 210 229 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00943 Copper-transporting ATPase signature 477 492 4.8E-17 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Pfam PF00403 Heavy-metal-associated domain 77 137 7.3E-18 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Pfam PF00403 Heavy-metal-associated domain 12 68 4.0E-14 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 74 138 8.6E-15 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Gene3D G3DSA:3.30.70.100 72 150 5.0E-24 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF55008 3 71 6.28E-19 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Gene3D G3DSA:3.30.70.100 1 71 3.9E-19 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 496 502 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF55008 73 141 4.58E-21 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 ProSitePatterns PS01047 Heavy-metal-associated domain. 79 108 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 265 777 7.6E-97 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 225 790 4.0E-201 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Gene3D G3DSA:1.20.1110.10 256 507 3.6E-50 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Pfam PF00702 haloacid dehalogenase-like hydrolase 490 702 7.9E-49 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF81665 393 486 4.18E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF81665 737 768 4.18E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF81665 258 296 4.18E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 206 791 2.3E-190 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Gene3D G3DSA:3.40.50.1000 614 752 4.8E-43 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF81653 296 392 4.84E-28 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF56784 546 788 8.8E-63 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 SUPERFAMILY SSF56784 492 512 8.8E-63 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 711 723 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 494 508 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 613 624 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 688 707 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 342 356 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 635 645 2.7E-28 T 29-03-2018 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Gene3D G3DSA:3.40.1110.10 508 613 1.4E-33 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CFE88_RS12645 a389534544f8cf744733ef3136c757e2 795 Pfam PF00122 E1-E2 ATPase 293 473 5.5E-58 T 29-03-2018 CFE88_RS04470 d9ad5f0b13268989227579cdacc2feab 155 Pfam PF03061 Thioesterase superfamily 18 102 3.9E-18 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CFE88_RS04470 d9ad5f0b13268989227579cdacc2feab 155 Gene3D G3DSA:3.10.129.10 3 144 1.7E-37 T 29-03-2018 CFE88_RS04470 d9ad5f0b13268989227579cdacc2feab 155 SUPERFAMILY SSF54637 4 133 6.15E-39 T 29-03-2018 IPR029069 HotDog domain CFE88_RS04470 d9ad5f0b13268989227579cdacc2feab 155 PIRSF PIRSF003230 3 137 2.5E-31 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CFE88_RS04470 d9ad5f0b13268989227579cdacc2feab 155 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 11 122 1.1E-29 T 29-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 Pfam PF00361 Proton-conducting membrane transporter 119 398 1.2E-54 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 65 106 7.1E-8 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 96 116 1.7E-16 T 29-03-2018 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 256 1.7E-16 T 29-03-2018 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 208 229 1.7E-16 T 29-03-2018 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 68 93 1.7E-16 T 29-03-2018 CFE88_RS09130 0516df1e1ac68650d5af68f0e186daf6 498 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 296 308 1.7E-16 T 29-03-2018 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 SUPERFAMILY SSF50249 1 62 6.85E-16 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 SMART SM00278 72 91 0.29 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 SMART SM00278 107 126 0.4 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 SUPERFAMILY SSF47781 64 131 6.23E-20 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 2 198 1.2E-50 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 199 29.263 T 29-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Pfam PF01330 RuvA N terminal domain 1 61 1.2E-20 T 29-03-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Gene3D G3DSA:1.10.150.280 56 79 0.001 T 29-03-2018 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 SUPERFAMILY SSF46929 152 198 1.15E-7 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Pfam PF07499 RuvA, C-terminal domain 155 198 4.8E-7 T 29-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Gene3D G3DSA:1.10.8.10 146 199 2.0E-5 T 29-03-2018 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Gene3D G3DSA:1.10.150.20 80 145 1.5E-16 T 29-03-2018 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Gene3D G3DSA:2.40.50.140 1 55 1.6E-20 T 29-03-2018 CFE88_RS03060 dec71866a94b8a2917feb18102fe7647 200 Pfam PF14520 Helix-hairpin-helix domain 71 128 3.4E-13 T 29-03-2018 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 Gene3D G3DSA:3.40.366.10 3 140 4.1E-34 T 29-03-2018 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 289 9.9E-96 T 29-03-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 SUPERFAMILY SSF55048 127 195 5.49E-15 T 29-03-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 Gene3D G3DSA:3.30.70.250 141 186 3.3E-19 T 29-03-2018 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 SUPERFAMILY SSF52151 4 119 3.66E-74 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 SUPERFAMILY SSF52151 188 304 3.66E-74 T 29-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 Gene3D G3DSA:3.40.366.10 187 307 1.5E-25 T 29-03-2018 CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 304 3.4E-34 T 29-03-2018 IPR020801 Polyketide synthase, acyl transferase domain CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 Pfam PF00698 Acyl transferase domain 7 285 1.9E-35 T 29-03-2018 IPR014043 Acyl transferase CFE88_RS05295 873017b2b60840cbf2a7a9b08614d867 309 PIRSF PIRSF000446 1 305 6.9E-99 T 29-03-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CFE88_RS08250 842ebdb2839ee1e8a9d008dfd217538d 189 SUPERFAMILY SSF46689 6 68 9.45E-14 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS08250 842ebdb2839ee1e8a9d008dfd217538d 189 Gene3D G3DSA:1.10.10.60 47 170 7.2E-6 T 29-03-2018 CFE88_RS08250 842ebdb2839ee1e8a9d008dfd217538d 189 Gene3D G3DSA:1.10.10.60 3 46 2.1E-9 T 29-03-2018 CFE88_RS08250 842ebdb2839ee1e8a9d008dfd217538d 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 56 1.7E-6 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 Gene3D G3DSA:3.40.50.1980 210 329 1.7E-31 T 29-03-2018 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 Gene3D G3DSA:3.40.50.1980 35 209 2.8E-52 T 29-03-2018 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00691 Adhesin B signature 60 78 7.1E-9 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00691 Adhesin B signature 263 280 7.1E-9 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00691 Adhesin B signature 35 56 7.1E-9 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00691 Adhesin B signature 307 325 7.1E-9 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 Pfam PF01297 Zinc-uptake complex component A periplasmic 38 327 1.4E-67 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00690 Adhesin family signature 66 79 1.4E-5 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00690 Adhesin family signature 35 53 1.4E-5 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 PRINTS PR00690 Adhesin family signature 79 96 1.4E-5 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS10250 61ee3aca1949bd548fb1a640bb716d5e 331 SUPERFAMILY SSF53807 34 329 1.72E-80 T 29-03-2018 CFE88_RS10440 bf5553a2d9468fd9a38c20ae97d3cabe 291 PIRSF PIRSF019271 1 286 5.5E-112 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 CFE88_RS10440 bf5553a2d9468fd9a38c20ae97d3cabe 291 Gene3D G3DSA:3.40.50.1000 55 223 6.6E-23 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS10440 bf5553a2d9468fd9a38c20ae97d3cabe 291 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 1 283 6.3E-104 T 29-03-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 CFE88_RS10440 bf5553a2d9468fd9a38c20ae97d3cabe 291 SUPERFAMILY SSF56784 67 265 5.19E-49 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS10440 bf5553a2d9468fd9a38c20ae97d3cabe 291 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 19 256 2.1E-50 T 29-03-2018 IPR005519 Acid phosphatase, class B-like CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 SUPERFAMILY SSF52540 952 1178 1.44E-12 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Pfam PF12538 DNA transporter 4 107 2.1E-16 T 29-03-2018 IPR022206 Firmicutes EssC, N-terminal CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 SUPERFAMILY SSF52540 631 880 1.76E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 SUPERFAMILY SSF49879 1 77 8.7E-25 T 29-03-2018 IPR008984 SMAD/FHA domain GO:0005515 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Gene3D G3DSA:2.60.200.20 2 77 2.3E-38 T 29-03-2018 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 SUPERFAMILY SSF49879 81 186 1.76E-32 T 29-03-2018 IPR008984 SMAD/FHA domain GO:0005515 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Gene3D G3DSA:3.40.50.300 913 1240 1.7E-8 T 29-03-2018 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Gene3D G3DSA:3.40.50.300 276 871 9.5E-26 T 29-03-2018 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Pfam PF01580 FtsK/SpoIIIE family 634 845 3.2E-30 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Pfam PF01580 FtsK/SpoIIIE family 987 1181 2.6E-25 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 Gene3D G3DSA:2.60.200.20 83 184 1.6E-22 T 29-03-2018 CFE88_RS10945 fe1b744d88a6dbba6ab4f378e562ac77 1479 TIGRFAM TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC 196 1476 0.0 T 29-03-2018 IPR023839 Firmicutes EssC, C-terminal CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Gene3D G3DSA:3.40.50.300 6 275 2.7E-48 T 29-03-2018 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Gene3D G3DSA:3.40.50.300 289 402 1.1E-8 T 29-03-2018 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Pfam PF01043 SecA preprotein cross-linking domain 236 344 1.4E-40 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 ProSitePatterns PS01312 SecA family signature. 486 501 - T 29-03-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Hamap MF_01382 Protein translocase subunit SecA [secA]. 3 784 19.08 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 503 1.5E-239 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Gene3D G3DSA:3.40.50.300 403 590 3.3E-54 T 29-03-2018 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF81886 577 792 2.09E-73 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF81886 821 833 2.09E-73 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Pfam PF07516 SecA Wing and Scaffold domain 574 780 8.7E-59 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Pfam PF07517 SecA DEAD-like domain 7 388 9.0E-118 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF52540 403 575 1.77E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF52540 354 401 3.19E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF52540 10 232 3.19E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Gene3D G3DSA:1.10.3060.10 699 793 1.7E-23 T 29-03-2018 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Gene3D G3DSA:1.10.3060.10 591 698 2.6E-27 T 29-03-2018 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 174 194 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 67 91 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 105 119 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 399 412 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 362 379 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 325 347 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 PRINTS PR00906 SecA protein signature 121 131 5.6E-69 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SUPERFAMILY SSF81767 231 354 6.8E-47 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 Pfam PF02810 SEC-C motif 825 843 3.9E-10 T 29-03-2018 IPR004027 SEC-C motif CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SMART SM00958 232 344 1.2E-65 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS07420 ea152be5ca16a31e5bd8d6de663c0656 844 SMART SM00957 4 388 7.4E-257 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 SUPERFAMILY SSF52172 1 115 1.57E-26 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 Pfam PF00072 Response regulator receiver domain 4 113 7.8E-25 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 SMART SM00448 1 112 8.6E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 Gene3D G3DSA:2.20.25.10 214 250 1.0E-12 T 29-03-2018 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 SMART SM00850 153 250 3.2E-30 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 Pfam PF04397 LytTr DNA-binding domain 154 249 1.0E-26 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 Gene3D G3DSA:2.40.50.40 143 213 3.7E-14 T 29-03-2018 CFE88_RS12035 76d07aef6c764c92ae590efdd4732fa0 252 Gene3D G3DSA:3.40.50.2300 1 135 9.6E-27 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:3.40.50.300 218 393 1.9E-40 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 224 381 5.6E-39 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 SUPERFAMILY SSF50447 623 720 5.74E-34 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 145 195 3.0E-17 T 29-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 52 1.4E-16 T 29-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Pfam PF11987 Translation-initiation factor 2 508 612 3.8E-37 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 SUPERFAMILY SSF52540 214 394 8.5E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 720 17.408 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:2.40.30.10 394 487 3.2E-14 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:3.30.56.50 147 188 3.4E-11 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:3.30.56.50 4 46 1.1E-13 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 SUPERFAMILY SSF52156 499 629 1.83E-38 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:2.40.30.10 623 720 1.7E-30 T 29-03-2018 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 137 720 1.6E-273 T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Gene3D G3DSA:3.40.50.10050 520 601 3.6E-27 T 29-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 SUPERFAMILY SSF50447 395 477 1.37E-24 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 Pfam PF00009 Elongation factor Tu GTP binding domain 227 381 9.7E-36 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05100 45b5b4cf99a0c07f58f15168e81eb006 720 ProSitePatterns PS01176 Initiation factor 2 signature. 673 695 - T 29-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02575 822af6b047406478c87185e8eef6de7b 553 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 387 533 1.2E-26 T 29-03-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS02575 822af6b047406478c87185e8eef6de7b 553 PIRSF PIRSF038958 2 549 2.3E-89 T 29-03-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CFE88_RS02575 822af6b047406478c87185e8eef6de7b 553 Pfam PF01943 Polysaccharide biosynthesis protein 8 325 1.0E-27 T 29-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 SUPERFAMILY SSF48024 8 119 1.02E-34 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 Gene3D G3DSA:1.10.860.10 3 151 1.4E-43 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 Pfam PF00772 DnaB-like helicase N terminal domain 10 109 3.2E-33 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 SUPERFAMILY SSF52540 183 450 4.25E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 10 458 2.7E-175 T 29-03-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 Gene3D G3DSA:3.40.50.300 167 466 4.8E-75 T 29-03-2018 CFE88_RS09775 bbb3dab7e2538165c34e6c66417315b6 466 Pfam PF03796 DnaB-like helicase C terminal domain 185 457 1.1E-114 T 29-03-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:2.40.50.140 54 160 4.7E-43 T 29-03-2018 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SUPERFAMILY SSF56037 208 401 4.97E-66 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:3.30.930.10 497 695 1.1E-34 T 29-03-2018 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Pfam PF03147 Ferredoxin-fold anticodon binding domain 708 800 2.0E-26 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Pfam PF01588 Putative tRNA binding domain 45 151 7.1E-25 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SMART SM00896 708 800 6.0E-39 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SUPERFAMILY SSF46955 412 482 3.48E-20 T 29-03-2018 IPR009061 Putative DNA-binding domain CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:3.30.56.10 408 482 3.6E-24 T 29-03-2018 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SUPERFAMILY SSF50249 41 200 2.35E-46 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SMART SM00873 220 393 9.0E-79 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SUPERFAMILY SSF54991 703 800 1.96E-28 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 795 46.432 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:3.50.40.10 203 404 3.7E-66 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Pfam PF03484 tRNA synthetase B5 domain 413 478 1.8E-20 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 800 5.2E-266 T 29-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SMART SM00874 410 478 1.1E-28 T 29-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Pfam PF03483 B3/4 domain 221 392 2.6E-61 T 29-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:3.30.70.380 704 800 2.9E-24 T 29-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 SUPERFAMILY SSF55681 474 696 1.04E-51 T 29-03-2018 CFE88_RS05670 a0df625d97b13711d3bdd41db2df0f3c 800 Gene3D G3DSA:3.30.56.10 1 53 2.6E-11 T 29-03-2018 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 Pfam PF01479 S4 domain 6 52 6.0E-11 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 230 6.3E-50 T 29-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 Pfam PF00849 RNA pseudouridylate synthase 66 199 5.4E-23 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 SUPERFAMILY SSF55120 49 241 3.08E-44 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 Gene3D G3DSA:3.10.290.10 1 73 2.5E-17 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 Gene3D G3DSA:3.30.2350.10 74 245 8.6E-40 T 29-03-2018 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 SMART SM00363 6 63 2.1E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 103 117 - T 29-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CFE88_RS03795 ac72722d1cdb707ae5839e5ce1cfbc40 245 SUPERFAMILY SSF55174 4 71 1.31E-15 T 29-03-2018 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Gene3D G3DSA:3.40.50.300 326 400 0.0038 T 29-03-2018 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Gene3D G3DSA:3.40.50.300 6 273 5.8E-44 T 29-03-2018 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Gene3D G3DSA:1.10.3060.10 609 783 3.5E-18 T 29-03-2018 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SUPERFAMILY SSF81886 582 795 2.49E-36 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SUPERFAMILY SSF81767 229 349 1.19E-34 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Pfam PF07516 SecA Wing and Scaffold domain 582 779 1.8E-20 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Hamap MF_01382 Protein translocase subunit SecA [secA]. 1 784 15.368 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Gene3D G3DSA:3.40.50.300 401 608 1.3E-30 T 29-03-2018 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 172 192 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 60 84 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 360 377 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 114 124 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 98 112 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 323 345 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 PRINTS PR00906 SecA protein signature 397 410 3.8E-55 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Pfam PF01043 SecA preprotein cross-linking domain 235 342 5.3E-26 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 Pfam PF07517 SecA DEAD-like domain 7 385 4.8E-102 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 TIGRFAM TIGR03714 secA2: accessory Sec system translocase SecA2 9 770 0.0 T 29-03-2018 IPR022490 Protein translocase subunit SecA2 GO:0015031|GO:0015450 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SUPERFAMILY SSF52540 352 398 7.89E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SUPERFAMILY SSF52540 4 230 7.89E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SMART SM00958 230 342 8.8E-35 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SUPERFAMILY SSF52540 401 554 1.22E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10165 93fc804e682cc4502d45c701d9b174da 796 SMART SM00957 2 386 3.7E-185 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS07530 c53d28b1cbff831d924ae23be096eb06 322 Pfam PF00268 Ribonucleotide reductase, small chain 5 280 2.7E-66 T 29-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07530 c53d28b1cbff831d924ae23be096eb06 322 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 1 320 4.7E-126 T 29-03-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS07530 c53d28b1cbff831d924ae23be096eb06 322 SUPERFAMILY SSF47240 2 319 1.93E-78 T 29-03-2018 IPR009078 Ferritin-like superfamily CFE88_RS07530 c53d28b1cbff831d924ae23be096eb06 322 Gene3D G3DSA:1.10.620.20 3 293 3.7E-64 T 29-03-2018 CFE88_RS11625 12d2810e0c0a3113e84ad89221c815fb 357 Gene3D G3DSA:3.60.21.10 47 350 3.5E-25 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11625 12d2810e0c0a3113e84ad89221c815fb 357 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 63 286 3.5E-26 T 29-03-2018 IPR019079 Capsule synthesis protein, CapA CFE88_RS11625 12d2810e0c0a3113e84ad89221c815fb 357 SMART SM00854 62 287 1.5E-33 T 29-03-2018 IPR019079 Capsule synthesis protein, CapA CFE88_RS11625 12d2810e0c0a3113e84ad89221c815fb 357 SUPERFAMILY SSF56300 85 300 2.81E-13 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04285 8f55782598b3a0d0ea792802e0c0c4d7 325 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 1 291 1.9E-97 T 29-03-2018 IPR011862 Phosphate binding protein GO:0006810 CFE88_RS04285 8f55782598b3a0d0ea792802e0c0c4d7 325 SUPERFAMILY SSF53850 40 305 8.15E-69 T 29-03-2018 CFE88_RS04285 8f55782598b3a0d0ea792802e0c0c4d7 325 Gene3D G3DSA:3.40.190.10 38 161 2.5E-36 T 29-03-2018 CFE88_RS04285 8f55782598b3a0d0ea792802e0c0c4d7 325 Gene3D G3DSA:3.40.190.10 162 309 7.2E-18 T 29-03-2018 CFE88_RS04285 8f55782598b3a0d0ea792802e0c0c4d7 325 Pfam PF12849 PBP superfamily domain 36 280 1.4E-39 T 29-03-2018 IPR024370 PBP domain CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 Gene3D G3DSA:3.30.420.150 125 309 2.7E-43 T 29-03-2018 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 SUPERFAMILY SSF53067 4 127 3.45E-27 T 29-03-2018 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 4 303 1.9E-99 T 29-03-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 Gene3D G3DSA:3.30.420.40 1 124 9.6E-31 T 29-03-2018 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 SUPERFAMILY SSF109604 317 508 8.79E-29 T 29-03-2018 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 SUPERFAMILY SSF53067 128 306 2.07E-42 T 29-03-2018 CFE88_RS11915 dba52f363ed1de985f883a2209f5f4a9 510 Pfam PF02541 Ppx/GppA phosphatase family 28 303 2.7E-49 T 29-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 SUPERFAMILY SSF54534 141 245 4.11E-27 T 29-03-2018 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 Pfam PF00639 PPIC-type PPIASE domain 146 244 1.1E-27 T 29-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 Gene3D G3DSA:3.10.50.40 135 245 6.8E-31 T 29-03-2018 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 Gene3D G3DSA:1.10.4030.10 30 132 1.1E-4 T 29-03-2018 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 Hamap MF_01145 Foldase protein PrsA [prsA]. 3 300 15.33 T 29-03-2018 IPR023059 Foldase protein PrsA GO:0003755 CFE88_RS02285 775caab316fb383d9aeeeb0080d5e5cb 323 SUPERFAMILY SSF109998 67 157 2.82E-11 T 29-03-2018 IPR027304 Trigger factor/SurA domain CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 SUPERFAMILY SSF53927 192 492 5.42E-119 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 426 7.4E-109 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Gene3D G3DSA:3.40.140.20 198 341 3.6E-53 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Gene3D G3DSA:3.40.50.1380 1 190 5.1E-70 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Pfam PF02142 MGS-like domain 13 128 2.5E-28 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 492 41.371 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 Gene3D G3DSA:3.40.140.20 342 482 1.4E-45 T 29-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 SMART SM00798 133 427 1.9E-175 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 SMART SM00851 13 128 3.6E-52 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2 492 3.2E-193 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 PIRSF PIRSF000414 1 492 1.1E-193 T 29-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS05985 a4d2efae3745da4cf5ca47ae14810171 492 SUPERFAMILY SSF52335 2 190 7.1E-67 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS12195 7a4e8e109d62d0d52a45aa36a4b5c7b0 104 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 6 102 6.9E-25 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CFE88_RS12195 7a4e8e109d62d0d52a45aa36a4b5c7b0 104 SUPERFAMILY SSF50022 6 103 2.88E-30 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CFE88_RS12195 7a4e8e109d62d0d52a45aa36a4b5c7b0 104 Pfam PF13806 Rieske-like [2Fe-2S] domain 7 101 7.3E-18 T 29-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CFE88_RS12195 7a4e8e109d62d0d52a45aa36a4b5c7b0 104 Gene3D G3DSA:2.102.10.10 3 104 3.3E-21 T 29-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 Gene3D G3DSA:2.60.260.20 1 75 1.8E-25 T 29-03-2018 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 SUPERFAMILY SSF69737 78 144 1.7E-18 T 29-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 149 23.116 T 29-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 Pfam PF02814 UreE urease accessory protein, N-terminal domain 17 71 1.7E-16 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 Pfam PF05194 UreE urease accessory protein, C-terminal domain 78 139 2.6E-10 T 29-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 Gene3D G3DSA:3.30.70.790 77 149 1.2E-23 T 29-03-2018 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 PIRSF PIRSF036402 1 150 1.3E-48 T 29-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 SMART SM00988 6 71 7.1E-15 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal CFE88_RS00430 91acedb3c8f7b68a4ae4be9e34d22ed5 150 SUPERFAMILY SSF69287 1 75 1.83E-18 T 29-03-2018 IPR004029 UreE urease accessory, N-terminal CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 Gene3D G3DSA:3.30.460.20 6 124 1.4E-16 T 29-03-2018 CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 Pfam PF01544 CorA-like Mg2+ transporter protein 23 310 1.8E-58 T 29-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 SUPERFAMILY SSF143865 12 249 2.09E-40 T 29-03-2018 CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 Gene3D G3DSA:1.20.58.340 131 247 1.5E-9 T 29-03-2018 CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 Gene3D G3DSA:1.20.58.340 248 315 7.1E-13 T 29-03-2018 CFE88_RS12295 3fb8cbfe4ed37feab2485676847b0eb7 315 SUPERFAMILY SSF144083 250 311 2.75E-13 T 29-03-2018 CFE88_RS02535 9ac3f432061714a1a86d53689999f6cc 136 Gene3D G3DSA:1.10.10.10 7 129 3.4E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02535 9ac3f432061714a1a86d53689999f6cc 136 SUPERFAMILY SSF46785 16 118 1.07E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02535 9ac3f432061714a1a86d53689999f6cc 136 PIRSF PIRSF032474 1 136 6.7E-58 T 29-03-2018 IPR016998 HTH-type transcriptional regulator Rot GO:0003700 CFE88_RS02535 9ac3f432061714a1a86d53689999f6cc 136 Pfam PF01047 MarR family 39 96 8.6E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS02535 9ac3f432061714a1a86d53689999f6cc 136 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 17 120 2.2E-30 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS03095 d6e40b0c12a4fff87d1c7c80d68af18d 172 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 7.4E-69 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CFE88_RS03095 d6e40b0c12a4fff87d1c7c80d68af18d 172 Pfam PF00156 Phosphoribosyl transferase domain 33 149 6.4E-15 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS03095 d6e40b0c12a4fff87d1c7c80d68af18d 172 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 37.673 T 29-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CFE88_RS03095 d6e40b0c12a4fff87d1c7c80d68af18d 172 Gene3D G3DSA:3.40.50.2020 1 172 1.3E-38 T 29-03-2018 CFE88_RS03095 d6e40b0c12a4fff87d1c7c80d68af18d 172 SUPERFAMILY SSF53271 3 164 7.1E-50 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 364 2.5E-111 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Gene3D G3DSA:3.30.1490.20 123 185 4.0E-16 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Gene3D G3DSA:3.40.50.20 10 94 4.3E-26 T 29-03-2018 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 SUPERFAMILY SSF52440 10 96 4.46E-27 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Gene3D G3DSA:3.30.470.20 186 368 1.5E-31 T 29-03-2018 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Pfam PF02222 ATP-grasp domain 118 283 5.4E-43 T 29-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 359 38.843 T 29-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 9 77 1.8E-6 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 SUPERFAMILY SSF56059 107 302 1.77E-54 T 29-03-2018 CFE88_RS06025 ce9ced7cc75185c62493531290bcb11c 375 SUPERFAMILY SSF51246 308 366 2.28E-16 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 SMART SM00116 257 305 4.7E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 SMART SM00116 317 365 1.9E-5 T 29-03-2018 IPR000644 CBS domain CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 SUPERFAMILY SSF54631 251 378 3.1E-24 T 29-03-2018 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 Gene3D G3DSA:3.10.580.10 256 417 2.5E-24 T 29-03-2018 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 SUPERFAMILY SSF52540 1 240 3.6E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 Gene3D G3DSA:3.40.50.300 1 255 1.3E-77 T 29-03-2018 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 SMART SM00382 27 213 7.3E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 Pfam PF00005 ABC transporter 18 163 1.0E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 Pfam PF00571 CBS domain 314 362 3.2E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 Pfam PF00571 CBS domain 255 300 4.3E-8 T 29-03-2018 IPR000644 CBS domain CFE88_RS12005 70e2eb771914425dfa77ae2ebb9d7651 418 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 12 370 6.5E-138 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SUPERFAMILY SSF50249 63 134 1.27E-13 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SUPERFAMILY SSF50249 631 710 2.43E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Gene3D G3DSA:2.40.50.140 132 287 0.0036 T 29-03-2018 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Pfam PF00575 S1 RNA binding domain 630 710 3.2E-15 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SUPERFAMILY SSF50249 211 629 2.8E-143 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SMART SM00955 251 581 1.5E-169 T 29-03-2018 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SMART SM00357 74 136 2.5E-5 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SMART SM00357 141 205 0.0027 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Gene3D G3DSA:2.40.50.140 631 774 6.8E-24 T 29-03-2018 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SMART SM00316 629 711 1.2E-15 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Gene3D G3DSA:2.40.50.140 58 131 0.031 T 29-03-2018 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Pfam PF08206 Ribonuclease B OB domain 75 132 1.2E-17 T 29-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Pfam PF08206 Ribonuclease B OB domain 150 202 4.4E-10 T 29-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Hamap MF_01895 Ribonuclease R [rnr]. 22 711 57.785 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 61 711 2.4E-219 T 29-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 SUPERFAMILY SSF50249 129 228 1.06E-18 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Gene3D G3DSA:1.10.10.10 2 57 4.9E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 Pfam PF00773 RNB domain 251 579 2.1E-111 T 29-03-2018 CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 ProSitePatterns PS01175 Ribonuclease II family signature. 548 572 - T 29-03-2018 IPR022966 Ribonuclease II/R, conserved site CFE88_RS07255 a4473659b57585ea357b9ae69582973a 792 TIGRFAM TIGR02063 RNase_R: ribonuclease R 1 711 1.0E-285 T 29-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 70 81 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 95 103 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 160 173 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 44 53 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00097 Anthranilate synthase component II signature 116 128 1.1E-31 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 Pfam PF00117 Glutamine amidotransferase class-I 4 181 1.5E-34 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 160 173 3.5E-13 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 44 53 3.5E-13 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 70 81 3.5E-13 T 29-03-2018 CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 SUPERFAMILY SSF52317 1 184 3.93E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 Gene3D G3DSA:3.40.50.880 1 187 7.3E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04395 ea5ed129859611afea9784dc78949bd0 188 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 182 9.0E-46 T 29-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 SUPERFAMILY SSF55174 2 200 5.1E-66 T 29-03-2018 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Pfam PF01479 S4 domain 93 139 1.4E-18 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 4.2E-26 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 SMART SM01390 3 91 3.0E-42 T 29-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Gene3D G3DSA:1.10.1050.10 1 97 3.7E-37 T 29-03-2018 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Gene3D G3DSA:3.10.290.10 98 148 3.3E-20 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 SMART SM00363 92 156 6.2E-18 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 ProSitePatterns PS00632 Ribosomal protein S4 signature. 90 114 - T 29-03-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 200 2.4E-81 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Gene3D G3DSA:1.10.1050.10 149 200 3.6E-19 T 29-03-2018 CFE88_RS02720 27c35cb94ca1ade5d705672e54c962a1 200 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 200 34.898 T 29-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS06290 f68d670289c61acafef858143bcc8153 169 Gene3D G3DSA:3.90.1140.10 1 169 6.2E-20 T 29-03-2018 CFE88_RS06290 f68d670289c61acafef858143bcc8153 169 SUPERFAMILY SSF55144 1 168 1.23E-26 T 29-03-2018 IPR009097 Cyclic phosphodiesterase CFE88_RS06290 f68d670289c61acafef858143bcc8153 169 Hamap MF_01444 Putative phosphoesterase . 1 169 36.824 T 29-03-2018 IPR022932 Putative phosphoesterase YjcG CFE88_RS06290 f68d670289c61acafef858143bcc8153 169 Pfam PF13563 2'-5' RNA ligase superfamily 9 154 3.4E-19 T 29-03-2018 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 Gene3D G3DSA:3.40.50.300 14 236 2.9E-90 T 29-03-2018 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 Gene3D G3DSA:3.40.50.300 237 441 6.6E-75 T 29-03-2018 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 3 555 48.234 T 29-03-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 Gene3D G3DSA:3.10.410.10 443 531 3.1E-39 T 29-03-2018 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 328 339 - T 29-03-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 Pfam PF01268 Formate--tetrahydrofolate ligase 5 555 1.3E-265 T 29-03-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 SUPERFAMILY SSF52540 6 553 1.37E-238 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02665 70b6d0aea1021025df68d749ae197c49 555 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 103 113 - T 29-03-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CFE88_RS08070 a3ff92e5c08ceb82d3454d7b11124097 100 PIRSF PIRSF028784 2 96 7.0E-27 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CFE88_RS08070 a3ff92e5c08ceb82d3454d7b11124097 100 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 35 86 1.0E-12 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 2.9E-5 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 2.9E-5 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 Pfam PF00117 Glutamine amidotransferase class-I 4 188 6.9E-44 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 SUPERFAMILY SSF52317 1 186 1.12E-45 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 100 108 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 2 16 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 48 57 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 75 86 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 120 132 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00097 Anthranilate synthase component II signature 165 178 5.2E-29 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 3.2E-57 T 29-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 3.8E-13 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 3.8E-13 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 3.8E-13 T 29-03-2018 CFE88_RS07640 19898d91ca0ded6a1252b013ba5dd270 195 Gene3D G3DSA:3.40.50.880 1 192 3.3E-46 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 ProSitePatterns PS60001 Nitric oxide synthase (NOS) signature. 61 68 - T 29-03-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 PIRSF PIRSF037219 1 354 2.6E-150 T 29-03-2018 IPR017142 Nitric oxide synthase, oxygenase subunit GO:0004517|GO:0006809|GO:0020037 KEGG: 00220+1.14.13.165|KEGG: 00330+1.14.13.165 CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 Pfam PF02898 Nitric oxide synthase, oxygenase domain 2 348 2.6E-151 T 29-03-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 Gene3D G3DSA:3.90.1230.10 181 291 4.4E-48 T 29-03-2018 CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 SUPERFAMILY SSF56512 2 353 2.49E-158 T 29-03-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 CFE88_RS01765 89c24c17f5f65b23b165c46a55507a74 355 Gene3D G3DSA:3.90.340.10 1 118 1.6E-41 T 29-03-2018 CFE88_RS04970 ad26377816d4e8facb634cd29f2e5a7a 164 PIRSF PIRSF024534 1 164 7.9E-72 T 29-03-2018 IPR012652 Energy coupling factor transporter S component ThiW CFE88_RS04970 ad26377816d4e8facb634cd29f2e5a7a 164 Pfam PF09512 Thiamine-precursor transporter protein (ThiW) 6 154 4.5E-51 T 29-03-2018 IPR012652 Energy coupling factor transporter S component ThiW CFE88_RS04970 ad26377816d4e8facb634cd29f2e5a7a 164 TIGRFAM TIGR02359 thiW: energy coupling factor transporter S component ThiW 3 159 3.5E-66 T 29-03-2018 IPR012652 Energy coupling factor transporter S component ThiW CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Gene3D G3DSA:3.40.1170.10 1 128 2.5E-50 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Pfam PF00488 MutS domain V 598 783 1.9E-82 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SUPERFAMILY SSF52540 553 785 2.17E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SMART SM00534 594 781 6.1E-107 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Gene3D G3DSA:1.10.1420.10 246 389 8.6E-37 T 29-03-2018 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Gene3D G3DSA:3.40.50.300 553 825 2.3E-43 T 29-03-2018 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 5 869 0.0 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Gene3D G3DSA:3.30.420.110 129 244 5.2E-23 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Gene3D G3DSA:1.10.1420.10 390 521 2.0E-27 T 29-03-2018 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SUPERFAMILY SSF53150 114 263 6.67E-34 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 864 25.235 T 29-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SUPERFAMILY SSF55271 2 112 2.22E-45 T 29-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SMART SM00533 267 577 2.8E-104 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Pfam PF01624 MutS domain I 5 116 4.3E-48 T 29-03-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 675 691 - T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Pfam PF05192 MutS domain III 255 545 1.7E-44 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 SUPERFAMILY SSF48334 250 552 2.88E-86 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Pfam PF05188 MutS domain II 125 236 5.6E-16 T 29-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 Pfam PF05190 MutS family domain IV 411 504 2.7E-27 T 29-03-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 PIRSF PIRSF037677 220 851 4.4E-132 T 29-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CFE88_RS04965 d35830d92d3c307584e5a44b4ca58722 873 PIRSF PIRSF037677 1 243 7.8E-41 T 29-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 Gene3D G3DSA:1.25.40.10 13 186 2.7E-24 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 Gene3D G3DSA:1.25.40.10 319 414 1.4E-8 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 Pfam PF13174 Tetratricopeptide repeat 33 64 0.096 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SUPERFAMILY SSF48452 323 405 7.21E-6 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 Gene3D G3DSA:1.25.40.10 187 293 1.1E-14 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 Gene3D G3DSA:1.20.58.280 294 318 0.14 T 29-03-2018 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SUPERFAMILY SSF48452 207 326 3.57E-21 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SUPERFAMILY SSF48452 26 173 3.57E-21 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SMART SM00028 234 267 130.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SMART SM00028 373 402 400.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SMART SM00028 130 163 270.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SMART SM00028 200 233 67.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03910 e832a2172fca5b7a4593eb56b569757d 414 SMART SM00028 96 129 28.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 Gene3D G3DSA:3.40.50.300 1 213 5.0E-39 T 29-03-2018 CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 206 21.088 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 4 173 1.3E-33 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 SUPERFAMILY SSF52540 2 198 1.16E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 Pfam PF13500 AAA domain 2 198 2.5E-26 T 29-03-2018 CFE88_RS10195 bb96946896d9f793aaa502a30ff1bd76 223 PIRSF PIRSF006755 1 217 1.0E-45 T 29-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 218 348 5.2E-10 T 29-03-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 SUPERFAMILY SSF53756 6 369 2.9E-44 T 29-03-2018 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 Hamap MF_01280 Processive diacylglycerol beta-glucosyltransferase [ugtP]. 2 388 50.529 T 29-03-2018 IPR023589 Processive diacylglycerol beta-glucosyltransferase GO:0047228 KEGG: 00561+2.4.1.315|MetaCyc: PWY-6778|MetaCyc: PWY-7817 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 Gene3D G3DSA:3.40.50.2000 1 182 1.6E-8 T 29-03-2018 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 Gene3D G3DSA:3.40.50.2000 183 362 3.1E-22 T 29-03-2018 CFE88_RS06280 97881023b69cf23b4f7a45e219c4dda3 391 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 19 179 2.5E-42 T 29-03-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 PIRSF PIRSF039088 1 501 1.4E-245 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 493 3.3E-45 T 29-03-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Gene3D G3DSA:2.40.30.20 3 82 8.0E-37 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 92 1.7E-17 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 499 50.792 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 SUPERFAMILY SSF50615 11 94 1.63E-29 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 SUPERFAMILY SSF52540 95 370 4.3E-98 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 SUPERFAMILY SSF47917 372 500 7.06E-47 T 29-03-2018 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 4.8E-73 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Gene3D G3DSA:3.40.50.300 83 364 8.7E-119 T 29-03-2018 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 Gene3D G3DSA:1.20.150.20 373 498 6.8E-49 T 29-03-2018 CFE88_RS01250 658121f0e222ab2b50441a019ff0f106 503 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 498 4.7E-252 T 29-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 256 3.2E-58 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 SMART SM00062 37 257 5.1E-69 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 Gene3D G3DSA:3.40.190.10 143 250 1.4E-18 T 29-03-2018 CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 Gene3D G3DSA:3.40.190.10 28 142 2.8E-33 T 29-03-2018 CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 SUPERFAMILY SSF53850 1 257 1.22E-61 T 29-03-2018 CFE88_RS12125 21c12f69146ab3ac2cd0b92a456be731 262 SMART SM00079 37 256 0.0022 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3 176 6.4E-44 T 29-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 1 310 54.041 T 29-03-2018 IPR026578 L-carnitine dehydrogenase KEGG: 00040+1.1.1.10|MetaCyc: PWY-3602|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7472 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 Gene3D G3DSA:3.40.50.720 1 178 1.3E-37 T 29-03-2018 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 Gene3D G3DSA:1.10.1040.10 181 281 2.7E-15 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 SUPERFAMILY SSF51735 2 178 2.94E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 SUPERFAMILY SSF48179 181 264 6.97E-13 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS10380 af9a3afa7c483ab58e61030025194ffe 320 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 181 251 2.6E-11 T 29-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 635 653 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Pfam PF07724 AAA domain (Cdc48 subfamily) 600 766 4.3E-55 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 293 305 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 772 852 2.9E-23 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 96 122 0.0048 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 66 2.8E-7 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SUPERFAMILY SSF81923 4 154 3.66E-30 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Gene3D G3DSA:1.10.8.60 342 551 8.0E-42 T 29-03-2018 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Gene3D G3DSA:3.40.50.300 556 771 3.6E-53 T 29-03-2018 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SUPERFAMILY SSF52540 157 549 5.33E-97 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 333 2.4E-15 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 858 0.0 T 29-03-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 679 697 8.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 726 8.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 605 623 8.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 650 668 8.6E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Gene3D G3DSA:1.10.1780.10 1 149 2.7E-18 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SMART SM01086 772 862 9.0E-32 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Gene3D G3DSA:1.10.8.60 772 867 1.9E-23 T 29-03-2018 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 Gene3D G3DSA:3.40.50.300 156 341 2.0E-27 T 29-03-2018 CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SUPERFAMILY SSF52540 550 857 3.97E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SMART SM00382 601 773 1.6E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS06645 a9aee607bdd9864a8d9f9d501887751d 869 SMART SM00382 197 341 8.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS02425 7d9b08622c70ce81de4af35dd247fc09 261 Pfam PF01370 NAD dependent epimerase/dehydratase family 48 120 1.4E-4 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CFE88_RS02425 7d9b08622c70ce81de4af35dd247fc09 261 Pfam PF00326 Prolyl oligopeptidase family 144 254 6.5E-10 T 29-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 CFE88_RS02425 7d9b08622c70ce81de4af35dd247fc09 261 Gene3D G3DSA:3.40.50.1820 18 261 1.2E-23 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02425 7d9b08622c70ce81de4af35dd247fc09 261 SUPERFAMILY SSF53474 25 253 1.74E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04365 4f50e818597c0c137d27570b3f214384 223 Pfam PF01965 DJ-1/PfpI family 31 219 1.2E-17 T 29-03-2018 IPR002818 DJ-1/PfpI CFE88_RS04365 4f50e818597c0c137d27570b3f214384 223 Gene3D G3DSA:3.40.50.880 2 223 2.3E-52 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04365 4f50e818597c0c137d27570b3f214384 223 SUPERFAMILY SSF52317 5 222 5.26E-65 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 Gene3D G3DSA:3.40.50.1010 3 187 2.8E-60 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 160 1.1E-50 T 29-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 175 257 1.7E-24 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 SMART SM00279 176 211 1.0E-12 T 29-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 Gene3D G3DSA:1.10.150.20 188 267 6.8E-24 T 29-03-2018 CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 SUPERFAMILY SSF88723 4 157 3.93E-48 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 SUPERFAMILY SSF47807 174 271 1.64E-25 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CFE88_RS04020 2f01da827365c8ee119d216590c972db 292 SMART SM00475 1 263 4.6E-110 T 29-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CFE88_RS09695 f05bac1df87f819c12367766cb9808ed 45 Pfam PF00468 Ribosomal protein L34 3 45 7.8E-23 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09695 f05bac1df87f819c12367766cb9808ed 45 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 2 45 15.729 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09695 f05bac1df87f819c12367766cb9808ed 45 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 45 7.9E-20 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09695 f05bac1df87f819c12367766cb9808ed 45 ProSitePatterns PS00784 Ribosomal protein L34 signature. 3 22 - T 29-03-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS09695 f05bac1df87f819c12367766cb9808ed 45 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 3 27 2.0E-7 T 29-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 400 426 3.5E-11 T 29-03-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 590 655 1.9E-11 T 29-03-2018 IPR001357 BRCT domain CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SUPERFAMILY SSF50249 310 392 5.31E-27 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 3 311 2.7E-131 T 29-03-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SMART SM00532 3 440 1.2E-278 T 29-03-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:3.30.470.30 116 231 1.6E-49 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF12826 Helix-hairpin-helix motif 503 565 1.4E-19 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF14520 Helix-hairpin-helix domain 438 493 1.5E-5 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:1.10.150.20 495 543 3.0E-16 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:3.40.50.10190 609 661 9.1E-15 T 29-03-2018 IPR001357 BRCT domain CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 112 141 - T 29-03-2018 IPR018239 NAD-dependent DNA ligase, active site CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 657 1.3E-265 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:2.40.50.140 315 382 5.1E-31 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:1.10.150.20 424 494 1.1E-27 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 PIRSF PIRSF001604 1 663 6.8E-252 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SMART SM00292 588 662 2.2E-8 T 29-03-2018 IPR001357 BRCT domain CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 315 391 2.3E-33 T 29-03-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SUPERFAMILY SSF56091 2 311 2.56E-122 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 324 339 - T 29-03-2018 IPR033136 NAD-dependent DNA ligase, conserved site CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:3.30.1490.70 232 314 4.8E-29 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:1.10.150.20 544 608 9.5E-4 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SMART SM00278 438 457 200.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SMART SM00278 536 555 29.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SMART SM00278 472 491 78.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Gene3D G3DSA:1.10.287.610 1 66 2.9E-22 T 29-03-2018 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 Hamap MF_01588 DNA ligase [ligA]. 2 662 50.977 T 29-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SUPERFAMILY SSF52113 588 660 2.24E-17 T 29-03-2018 IPR001357 BRCT domain CFE88_RS01810 a9689c25f7fcc640a61f282016708ae1 665 SUPERFAMILY SSF47781 396 576 4.23E-59 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS03055 805fb3ba661d7f7b0fd91e32854b5896 154 PIRSF PIRSF025624 3 153 1.6E-63 T 29-03-2018 IPR008310 UPF0735 ACT domain-containing protein CFE88_RS03055 805fb3ba661d7f7b0fd91e32854b5896 154 SUPERFAMILY SSF55021 75 149 1.45E-9 T 29-03-2018 CFE88_RS03055 805fb3ba661d7f7b0fd91e32854b5896 154 Gene3D G3DSA:3.30.70.260 76 153 7.5E-11 T 29-03-2018 CFE88_RS03055 805fb3ba661d7f7b0fd91e32854b5896 154 Hamap MF_00707 UPF0735 ACT domain-containing protein . 8 153 27.894 T 29-03-2018 IPR008310 UPF0735 ACT domain-containing protein CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 781 21.359 T 29-03-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 Pfam PF00488 MutS domain V 332 512 9.6E-35 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SUPERFAMILY SSF160443 705 781 7.45E-10 T 29-03-2018 IPR002625 Smr domain CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 TIGRFAM TIGR01069 mutS2: MutS2 family protein 1 782 1.3E-239 T 29-03-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 411 427 - T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SMART SM00533 9 316 4.1E-7 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SMART SM00534 329 514 1.7E-84 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SMART SM00463 704 782 2.6E-24 T 29-03-2018 IPR002625 Smr domain CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 Gene3D G3DSA:3.40.50.300 293 557 3.2E-36 T 29-03-2018 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SUPERFAMILY SSF52540 294 518 6.46E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 SUPERFAMILY SSF48334 20 289 2.49E-20 T 29-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 PIRSF PIRSF005814 1 782 2.3E-278 T 29-03-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 CFE88_RS05645 3fdef95ee6c7f3ad25117a9a401a6b75 782 Pfam PF01713 Smr domain 707 782 3.3E-20 T 29-03-2018 IPR002625 Smr domain CFE88_RS02025 400905e18b6d48e4460c3c097787c649 150 SUPERFAMILY SSF46785 14 144 1.49E-42 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02025 400905e18b6d48e4460c3c097787c649 150 Pfam PF01475 Ferric uptake regulator family 22 139 2.5E-40 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CFE88_RS02025 400905e18b6d48e4460c3c097787c649 150 Gene3D G3DSA:1.10.10.10 2 94 2.7E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Hamap MF_01916 Cardiolipin synthase. 15 490 42.254 T 29-03-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 PIRSF PIRSF000850 106 284 0.003 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 PIRSF PIRSF000850 390 474 0.028 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 PIRSF PIRSF000850 285 382 13.0 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Pfam PF13091 PLD-like domain 332 457 1.8E-29 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Pfam PF13091 PLD-like domain 144 259 4.7E-13 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Pfam PF13396 Phospholipase_D-nuclease N-terminal 21 64 8.3E-12 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Gene3D G3DSA:3.30.870.10 116 322 1.6E-32 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 8 490 1.8E-223 T 29-03-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 SUPERFAMILY SSF56024 82 319 2.88E-48 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 SUPERFAMILY SSF56024 276 475 2.92E-54 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 Gene3D G3DSA:3.30.870.10 323 480 1.5E-33 T 29-03-2018 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 SMART SM00155 225 252 5.9E-6 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CFE88_RS04640 6af4e2a2b1dae0f21ba0b7d7573fb893 490 SMART SM00155 403 430 1.0E-7 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 ProSitePatterns PS00618 RecF protein signature 2. 313 331 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 371 104.156 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 349 7.4E-17 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 SUPERFAMILY SSF52540 1 217 3.87E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 SUPERFAMILY SSF52540 245 353 3.87E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 368 1.6E-139 T 29-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 Gene3D G3DSA:3.40.50.300 1 371 2.3E-33 T 29-03-2018 CFE88_RS09715 be09f80ac703dbade12d883048c06f84 371 ProSitePatterns PS00617 RecF protein signature 1. 116 136 - T 29-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SUPERFAMILY SSF46600 613 659 2.35E-10 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 7 658 0.0 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Gene3D G3DSA:3.40.50.300 12 416 6.1E-34 T 29-03-2018 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SMART SM00487 11 427 1.2E-29 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Hamap MF_00204 UvrABC system protein B [uvrB]. 5 660 44.665 T 29-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Gene3D G3DSA:3.40.50.300 417 590 7.9E-33 T 29-03-2018 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SUPERFAMILY SSF52540 6 416 8.9E-146 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SUPERFAMILY SSF52540 34 82 7.98E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SUPERFAMILY SSF52540 471 595 7.98E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Pfam PF00271 Helicase conserved C-terminal domain 435 546 7.2E-19 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Gene3D G3DSA:4.10.860.10 602 661 2.5E-14 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 SMART SM00490 461 547 1.9E-19 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Pfam PF12344 Ultra-violet resistance protein B 553 594 3.5E-24 T 29-03-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Pfam PF02151 UvrB/uvrC motif 626 659 1.2E-8 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS07385 b61351c1b1e7d6bbba011b468736c29a 661 Pfam PF04851 Type III restriction enzyme, res subunit 13 121 1.1E-11 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 29-03-2018 IPR020845 AMP-binding, conserved site CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Gene3D G3DSA:3.30.300.30 419 526 1.9E-27 T 29-03-2018 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 510 2.5E-21 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Pfam PF00501 AMP-binding enzyme 26 423 3.6E-77 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Gene3D G3DSA:3.40.50.980 181 333 1.6E-38 T 29-03-2018 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 SUPERFAMILY SSF56801 24 520 4.19E-134 T 29-03-2018 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Gene3D G3DSA:2.30.38.10 334 416 1.1E-17 T 29-03-2018 CFE88_RS11300 e73d3fb2b32d426f2cbe13167d00ddca 526 Gene3D G3DSA:3.40.50.980 9 180 2.8E-30 T 29-03-2018 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Gene3D G3DSA:3.40.50.980 144 295 2.3E-34 T 29-03-2018 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 TIGRFAM TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1 3 484 2.3E-210 T 29-03-2018 IPR010072 D-alanine--poly(phosphoribitol) ligase subunit 1 GO:0005524|GO:0047473|GO:0070395 KEGG: 00473+6.1.1.13 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Gene3D G3DSA:3.30.300.30 381 485 1.1E-27 T 29-03-2018 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 29 411 1.1E-98 T 29-03-2018 IPR010071 Amino acid adenylation domain CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 SUPERFAMILY SSF56801 4 484 7.2E-114 T 29-03-2018 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Pfam PF00501 AMP-binding enzyme 10 386 6.9E-72 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Pfam PF13193 AMP-binding enzyme C-terminal domain 395 473 5.4E-10 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Hamap MF_00593 D-alanine--poly(phosphoribitol) ligase subunit 1 [dltA]. 1 485 224.64 T 29-03-2018 IPR010072 D-alanine--poly(phosphoribitol) ligase subunit 1 GO:0005524|GO:0047473|GO:0070395 KEGG: 00473+6.1.1.13 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Gene3D G3DSA:3.40.50.980 2 143 6.8E-29 T 29-03-2018 CFE88_RS06860 bc34fc442add8e4ca4231f72bcfbea46 485 Gene3D G3DSA:2.30.38.10 296 380 2.1E-12 T 29-03-2018 CFE88_RS02730 142cf43eb51a82501057d7e091eb01b8 156 Gene3D G3DSA:3.30.450.40 12 155 1.1E-22 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS02730 142cf43eb51a82501057d7e091eb01b8 156 Pfam PF13185 GAF domain 47 147 3.4E-10 T 29-03-2018 IPR003018 GAF domain GO:0005515 CFE88_RS02730 142cf43eb51a82501057d7e091eb01b8 156 SUPERFAMILY SSF55781 14 149 6.76E-41 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS02730 142cf43eb51a82501057d7e091eb01b8 156 SMART SM00065 25 154 0.0078 T 29-03-2018 IPR003018 GAF domain GO:0005515 CFE88_RS07630 039f0803e334ba3f2436d5ae5835cd71 202 Pfam PF01063 Amino-transferase class IV 3 199 4.2E-25 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS07630 039f0803e334ba3f2436d5ae5835cd71 202 SUPERFAMILY SSF56752 2 199 2.88E-30 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS07630 039f0803e334ba3f2436d5ae5835cd71 202 Gene3D G3DSA:3.20.10.10 76 202 8.4E-17 T 29-03-2018 CFE88_RS07630 039f0803e334ba3f2436d5ae5835cd71 202 Gene3D G3DSA:3.30.470.10 1 75 3.4E-17 T 29-03-2018 CFE88_RS04055 84d9c06a0236b515fc38d85225ae8258 349 Pfam PF12704 MacB-like periplasmic core domain 18 164 1.1E-7 T 29-03-2018 IPR025857 MacB-like periplasmic core domain CFE88_RS06320 daf57a96f53a707e3802fcf7d2255170 213 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 1 205 1.8E-37 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06320 daf57a96f53a707e3802fcf7d2255170 213 Pfam PF04276 Protein of unknown function (DUF443) 7 200 9.1E-23 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS04560 df5d59fb85babc72449511a5ab9adc95 482 Pfam PF00324 Amino acid permease 14 469 3.8E-125 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS04560 df5d59fb85babc72449511a5ab9adc95 482 PIRSF PIRSF006060 1 481 3.0E-79 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS04560 df5d59fb85babc72449511a5ab9adc95 482 ProSitePatterns PS00218 Amino acid permeases signature. 39 70 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 SUPERFAMILY SSF52507 2 176 2.09E-59 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 2 394 6.8E-143 T 29-03-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 SUPERFAMILY SSF102645 186 398 2.62E-71 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 Pfam PF02441 Flavoprotein 2 173 5.2E-46 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 Gene3D G3DSA:3.40.50.1950 1 181 1.4E-54 T 29-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 Gene3D G3DSA:3.40.50.10300 182 399 6.7E-66 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CFE88_RS05385 0e2335df71ce00b36126b14d6c373e44 399 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 368 3.5E-70 T 29-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:3.40.50.300 492 713 2.5E-55 T 29-03-2018 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SUPERFAMILY SSF52540 486 799 3.52E-83 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SMART SM01086 714 803 3.6E-36 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:1.10.1780.10 1 78 2.5E-21 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:1.10.1780.10 79 191 3.2E-24 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF07724 AAA domain (Cdc48 subfamily) 536 708 8.1E-56 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:1.10.8.60 714 817 3.8E-26 T 29-03-2018 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 2.4E-14 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 4.1E-16 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF02151 UvrB/uvrC motif 417 452 2.2E-5 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SUPERFAMILY SSF52540 161 469 1.97E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 541 559 2.1E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 586 604 2.1E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 2.1E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 662 2.1E-42 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SUPERFAMILY SSF81923 5 152 1.96E-30 T 29-03-2018 IPR004176 Clp, N-terminal GO:0019538 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:3.40.50.300 192 342 1.2E-21 T 29-03-2018 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 334 6.7E-14 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SMART SM00382 537 715 3.2E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 SMART SM00382 200 345 2.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 571 589 - T 29-03-2018 IPR028299 ClpA/B, conserved site 2 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 29-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 714 794 1.2E-26 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS08655 6b8d78f1659afcdb02c72048f69a16f5 817 Gene3D G3DSA:1.10.8.60 344 487 5.9E-44 T 29-03-2018 CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 SUPERFAMILY SSF53067 108 203 1.06E-12 T 29-03-2018 CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 SUPERFAMILY SSF53067 1 101 1.99E-26 T 29-03-2018 CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 Pfam PF00814 Glycoprotease family 31 181 1.5E-31 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 Gene3D G3DSA:1.10.8.130 123 188 0.016 T 29-03-2018 IPR035569 Antitoxin epsilon/PezA domain CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 Gene3D G3DSA:3.30.420.40 1 122 4.1E-33 T 29-03-2018 CFE88_RS01515 902894c948322aec2e2cb914cbaea5f9 220 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 203 6.0E-51 T 29-03-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 SMART SM00342 165 248 1.4E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 Gene3D G3DSA:1.10.10.60 115 197 8.8E-7 T 29-03-2018 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 SUPERFAMILY SSF46689 202 249 3.67E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 202 244 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 Gene3D G3DSA:1.10.10.60 198 257 7.7E-9 T 29-03-2018 CFE88_RS07915 b7669d6156a9423c6d2f2804f6e216af 724 Pfam PF12833 Helix-turn-helix domain 172 249 1.6E-14 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 SUPERFAMILY SSF52210 239 386 8.37E-54 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 SUPERFAMILY SSF56059 1 238 2.42E-83 T 29-03-2018 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Gene3D G3DSA:3.40.50.261 240 385 2.7E-43 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Pfam PF00549 CoA-ligase 262 380 2.0E-24 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Gene3D G3DSA:3.30.1490.20 21 95 3.5E-25 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 5.7E-167 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 29-03-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Gene3D G3DSA:3.30.470.20 96 239 2.6E-57 T 29-03-2018 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 PIRSF PIRSF001554 1 388 7.1E-158 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 44.774 T 29-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS05210 1d87078315c4600fdfd086103f2bd947 388 Pfam PF08442 ATP-grasp domain 2 202 3.6E-84 T 29-03-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS11075 668784f4c0cd6ba8752b9af5fb63b4e9 176 SUPERFAMILY SSF160424 15 175 6.93E-58 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 668784f4c0cd6ba8752b9af5fb63b4e9 176 Pfam PF04634 Protein of unknown function, DUF600 19 164 3.2E-49 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 668784f4c0cd6ba8752b9af5fb63b4e9 176 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 15 169 1.1E-66 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11075 668784f4c0cd6ba8752b9af5fb63b4e9 176 Gene3D G3DSA:3.30.500.20 16 128 4.2E-38 T 29-03-2018 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 41.316 T 29-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 29-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 PIRSF PIRSF000709 2 219 3.2E-7 T 29-03-2018 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 228 3.5E-99 T 29-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 SMART SM00855 3 189 1.4E-23 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 129 1.2E-27 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 Gene3D G3DSA:3.40.50.1240 1 228 2.7E-60 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS12115 1115401a510e932d9b922acc2c101bc0 228 SUPERFAMILY SSF53254 1 220 4.71E-71 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 391 410 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 315 338 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 163 180 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 210 230 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 182 205 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PRINTS PR01607 Apyrase family signature 1 15 6.7E-18 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 Gene3D G3DSA:3.60.21.10 1 272 2.0E-47 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 SUPERFAMILY SSF55816 284 437 1.96E-21 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 Gene3D G3DSA:3.90.780.10 273 439 2.1E-22 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 SUPERFAMILY SSF56300 2 250 2.2E-58 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 Pfam PF00149 Calcineurin-like phosphoesterase 3 199 1.0E-7 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 PIRSF PIRSF036361 1 439 1.8E-183 T 29-03-2018 IPR011240 Phosphoesterase-related protein YunD CFE88_RS06905 b3eb3bd66e004e633440ff07037a91d9 439 Pfam PF02872 5'-nucleotidase, C-terminal domain 286 402 5.0E-9 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 Gene3D G3DSA:3.30.70.890 221 358 5.1E-24 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 Gene3D G3DSA:3.30.230.10 1 220 1.1E-44 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 PRINTS PR00959 Mevalonate kinase family signature 112 134 2.5E-7 T 29-03-2018 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 PRINTS PR00959 Mevalonate kinase family signature 6 30 2.5E-7 T 29-03-2018 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 PRINTS PR00959 Mevalonate kinase family signature 313 330 2.5E-7 T 29-03-2018 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 SUPERFAMILY SSF55060 214 354 4.56E-32 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 Pfam PF08544 GHMP kinases C terminal 261 330 2.3E-8 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 Pfam PF00288 GHMP kinases N terminal domain 103 174 1.9E-14 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 TIGRFAM TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase 2 358 1.5E-179 T 29-03-2018 IPR005917 Phosphomevalonate kinase KEGG: 00900+2.7.4.2|MetaCyc: PWY-7391|MetaCyc: PWY-922 CFE88_RS08285 abae5ef69e095a7f5e52a9c00a391ae9 358 SUPERFAMILY SSF54211 1 230 4.17E-48 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08465 4449d64b7041f6e5ff6c711932c9ea4a 220 Pfam PF01712 Deoxynucleoside kinase 12 212 1.6E-64 T 29-03-2018 IPR031314 Deoxynucleoside kinase domain CFE88_RS08465 4449d64b7041f6e5ff6c711932c9ea4a 220 SUPERFAMILY SSF52540 9 211 3.63E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08465 4449d64b7041f6e5ff6c711932c9ea4a 220 PIRSF PIRSF000705 1 218 2.1E-63 T 29-03-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 CFE88_RS08465 4449d64b7041f6e5ff6c711932c9ea4a 220 Gene3D G3DSA:3.40.50.300 7 219 5.8E-47 T 29-03-2018 CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 Pfam PF06508 Queuosine biosynthesis protein QueC 10 216 1.6E-86 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 11 209 2.3E-81 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 SUPERFAMILY SSF52402 8 215 2.14E-67 T 29-03-2018 CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 PIRSF PIRSF006293 7 222 5.6E-79 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 Gene3D G3DSA:3.40.50.620 7 222 6.9E-55 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS07645 4a77be8d3818bb89b8f7357ec1a37835 223 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 9 221 50.961 T 29-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 PIRSF PIRSF002144 1 92 5.2E-33 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 2.2E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 2.2E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 2.2E-24 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.636 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 29-03-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 Pfam PF00203 Ribosomal protein S19 3 83 1.7E-37 T 29-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 2.8E-48 T 29-03-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 SUPERFAMILY SSF54570 3 84 7.59E-36 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00635 7695aad33df84cdedec5e126938d605e 92 Gene3D G3DSA:3.30.860.10 1 92 3.0E-41 T 29-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 Gene3D G3DSA:1.20.120.220 73 242 8.7E-41 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 ProSitePatterns PS00449 ATP synthase a subunit signature. 170 179 - T 29-03-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 18 237 4.3E-42 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 Pfam PF00119 ATP synthase A chain 24 235 4.3E-56 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 241 13.084 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 SUPERFAMILY SSF81336 74 235 2.35E-38 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 PRINTS PR00123 ATP synthase A subunit signature 221 236 9.9E-19 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 PRINTS PR00123 ATP synthase A subunit signature 82 98 9.9E-19 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01230 e4e0fbbf0de0c92723a47be7280a7d6c 242 PRINTS PR00123 ATP synthase A subunit signature 167 189 9.9E-19 T 29-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 Pfam PF01063 Amino-transferase class IV 30 252 1.1E-44 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 SUPERFAMILY SSF56752 3 275 3.66E-80 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 ProSitePatterns PS00770 Aminotransferases class-IV signature. 178 207 - T 29-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 Gene3D G3DSA:3.20.10.10 132 281 7.5E-37 T 29-03-2018 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 Gene3D G3DSA:3.30.470.10 1 131 1.4E-31 T 29-03-2018 CFE88_RS02595 941f3b786e270575f6f663c4f7026d21 282 TIGRFAM TIGR01121 D_amino_aminoT: D-amino-acid transaminase 3 278 4.4E-137 T 29-03-2018 IPR005784 D-amino acid aminotransferase GO:0008483|GO:0030170|GO:0046416 KEGG: 00310+2.6.1.21|KEGG: 00330+2.6.1.21|KEGG: 00360+2.6.1.21|KEGG: 00472+2.6.1.21|KEGG: 00473+2.6.1.21 CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 Pfam PF01476 LysM domain 29 70 3.6E-13 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 Pfam PF01476 LysM domain 90 132 1.5E-12 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 SUPERFAMILY SSF54106 89 132 1.28E-10 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 SUPERFAMILY SSF54106 28 70 1.03E-11 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 SUPERFAMILY SSF54001 154 265 7.16E-21 T 29-03-2018 CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 SMART SM00257 89 132 1.4E-14 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 SMART SM00257 28 71 3.1E-14 T 29-03-2018 IPR018392 LysM domain CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 Gene3D G3DSA:3.10.350.10 83 154 1.6E-14 T 29-03-2018 CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 Gene3D G3DSA:3.10.350.10 22 82 1.6E-16 T 29-03-2018 CFE88_RS07925 3f72ad3e675a58c5961f6e94b60a92c8 266 Pfam PF05257 CHAP domain 161 241 6.2E-14 T 29-03-2018 IPR007921 CHAP domain CFE88_RS00530 c38df59425950be60eaeeaef808d3e2e 200 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 195 20.041 T 29-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 CFE88_RS00530 c38df59425950be60eaeeaef808d3e2e 200 Gene3D G3DSA:3.90.550.10 1 199 1.4E-23 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00530 c38df59425950be60eaeeaef808d3e2e 200 SUPERFAMILY SSF53448 1 193 5.63E-22 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00530 c38df59425950be60eaeeaef808d3e2e 200 Pfam PF12804 MobA-like NTP transferase domain 3 152 6.3E-23 T 29-03-2018 IPR025877 MobA-like NTP transferase CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 Pfam PF00171 Aldehyde dehydrogenase family 13 470 6.4E-162 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 244 251 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 SUPERFAMILY SSF53720 4 470 1.44E-150 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 Gene3D G3DSA:3.40.309.10 260 456 1.3E-69 T 29-03-2018 CFE88_RS01160 0e4e555bd7c8a00877e606bb61c9ff5e 475 Gene3D G3DSA:3.40.605.10 1 259 1.4E-84 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.40.50.980 1457 1603 1.9E-36 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.40.50.980 434 580 5.1E-41 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF07993 Male sterility protein 2057 2271 1.5E-27 T 29-03-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF13193 AMP-binding enzyme C-terminal domain 1855 1926 5.7E-7 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.30.559.10 12 179 1.1E-6 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF51735 2054 2321 1.24E-28 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.30.300.30 1842 1955 3.9E-26 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.30.300.30 825 940 4.0E-30 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF47336 1943 2013 4.45E-14 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF52777 22 179 1.45E-8 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF52777 1022 1184 6.78E-33 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:1.10.1200.10 1956 2020 1.1E-16 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:1.10.1200.10 941 1003 2.8E-19 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:2.30.38.10 742 820 1.8E-20 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:2.30.38.10 1759 1837 1.3E-19 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 462 854 1.5E-119 T 29-03-2018 IPR010071 Amino acid adenylation domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1485 1871 1.1E-107 T 29-03-2018 IPR010071 Amino acid adenylation domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 ProSitePatterns PS00012 Phosphopantetheine attachment site. 959 974 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 ProSitePatterns PS00455 Putative AMP-binding domain signature. 579 590 - T 29-03-2018 IPR020845 AMP-binding, conserved site CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00550 Phosphopantetheine attachment site 937 999 6.0E-12 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00550 Phosphopantetheine attachment site 1952 2013 1.6E-9 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00501 AMP-binding enzyme 441 830 2.2E-92 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00501 AMP-binding enzyme 1467 1846 4.5E-80 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.40.50.980 581 733 1.7E-31 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.40.50.980 1604 1749 2.4E-23 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.30.559.10 1004 1198 7.3E-27 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF56801 431 948 1.96E-134 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF52777 1186 1434 6.56E-52 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Gene3D G3DSA:3.40.50.720 2050 2334 1.4E-23 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00668 Condensation domain 22 189 1.7E-6 T 29-03-2018 IPR001242 Condensation domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 Pfam PF00668 Condensation domain 1019 1434 4.2E-92 T 29-03-2018 IPR001242 Condensation domain CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF56801 1454 1963 5.23E-120 T 29-03-2018 CFE88_RS10495 a17c71aefabaa4e94c88d2babcb4eb1c 2400 SUPERFAMILY SSF47336 927 1000 3.27E-17 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Gene3D G3DSA:3.40.1190.10 99 336 5.8E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Gene3D G3DSA:3.40.1390.10 1 98 4.2E-23 T 29-03-2018 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Pfam PF08245 Mur ligase middle domain 108 311 1.9E-53 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 476 2.8E-132 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 10 484 30.632 T 29-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 SUPERFAMILY SSF63418 16 97 2.09E-20 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 SUPERFAMILY SSF53244 332 475 3.4E-32 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Pfam PF02875 Mur ligase family, glutamate ligase domain 332 414 5.7E-18 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Pfam PF01225 Mur ligase family, catalytic domain 25 78 6.3E-8 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 Gene3D G3DSA:3.90.190.20 337 490 4.9E-37 T 29-03-2018 CFE88_RS06275 ea25589c7e59d6633491fee22a07b8ed 494 SUPERFAMILY SSF53623 99 331 2.88E-68 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SMART SM00316 134 200 2.4E-6 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Gene3D G3DSA:3.30.300.20 199 273 1.1E-33 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SUPERFAMILY SSF50249 133 199 1.62E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SUPERFAMILY SSF54814 279 343 1.9E-15 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SUPERFAMILY SSF69705 4 126 4.32E-39 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 3 401 29.239 T 29-03-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SUPERFAMILY SSF54814 200 278 5.04E-29 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Pfam PF13184 NusA-like KH domain 230 297 1.3E-28 T 29-03-2018 IPR025249 KH domain, NusA-like GO:0003723 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Pfam PF08529 NusA N-terminal domain 5 125 8.0E-39 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Gene3D G3DSA:2.40.50.140 137 198 1.2E-11 T 29-03-2018 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Gene3D G3DSA:3.30.300.20 274 342 3.4E-15 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SMART SM00322 230 302 0.08 T 29-03-2018 IPR004087 K Homology domain GO:0003676 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 SMART SM00322 303 401 4.1 T 29-03-2018 IPR004087 K Homology domain GO:0003676 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 6 342 1.6E-124 T 29-03-2018 IPR010213 Transcription termination factor NusA GO:0003723 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Pfam PF00575 S1 RNA binding domain 133 196 2.6E-5 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS05115 f58ee0d7f9565778ba0b7f8688f8bce8 407 Gene3D G3DSA:3.30.1480.10 2 130 8.6E-45 T 29-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CFE88_RS03160 c5f618db4de8155e9c3cb2890514cee8 380 SUPERFAMILY SSF53383 3 374 1.93E-98 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03160 c5f618db4de8155e9c3cb2890514cee8 380 Gene3D G3DSA:3.40.640.10 11 254 2.5E-59 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS03160 c5f618db4de8155e9c3cb2890514cee8 380 Pfam PF00266 Aminotransferase class-V 3 364 1.2E-77 T 29-03-2018 IPR000192 Aminotransferase class V domain CFE88_RS03160 c5f618db4de8155e9c3cb2890514cee8 380 Gene3D G3DSA:3.90.1150.10 263 380 1.8E-28 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03160 c5f618db4de8155e9c3cb2890514cee8 380 PIRSF PIRSF005572 1 380 4.0E-122 T 29-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CFE88_RS06445 298c96b473eb1e3d04cbfb450a0c1154 57 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 5 57 2.4E-13 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06445 298c96b473eb1e3d04cbfb450a0c1154 57 Gene3D G3DSA:3.40.50.720 3 57 8.5E-14 T 29-03-2018 CFE88_RS06445 298c96b473eb1e3d04cbfb450a0c1154 57 SUPERFAMILY SSF51735 5 56 8.86E-13 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 SUPERFAMILY SSF52540 191 509 4.77E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Pfam PF14490 Helix-hairpin-helix containing domain 153 243 2.9E-29 T 29-03-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 9 796 29.02 T 29-03-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Pfam PF13604 AAA domain 339 545 1.0E-52 T 29-03-2018 CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Gene3D G3DSA:1.10.150.280 100 209 1.4E-5 T 29-03-2018 CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Pfam PF13538 UvrD-like helicase C-terminal domain 672 719 5.0E-16 T 29-03-2018 IPR027785 UvrD-like helicase C-terminal domain CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Gene3D G3DSA:3.40.50.300 524 733 3.2E-27 T 29-03-2018 CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 SMART SM00382 352 512 2.1E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 Gene3D G3DSA:3.40.50.300 210 523 4.0E-34 T 29-03-2018 CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 SUPERFAMILY SSF52540 460 527 3.19E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 SUPERFAMILY SSF52540 565 744 3.19E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03175 0445d01b6783aa9d58f827e79f6977bb 810 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 12 743 0.0 T 29-03-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 CFE88_RS00720 886379a00013de30cd008427993d792a 215 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 1.6E-81 T 29-03-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CFE88_RS00720 886379a00013de30cd008427993d792a 215 Pfam PF05191 Adenylate kinase, active site lid 127 162 4.8E-18 T 29-03-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CFE88_RS00720 886379a00013de30cd008427993d792a 215 PRINTS PR00094 Adenylate kinase signature 32 46 7.6E-32 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 PRINTS PR00094 Adenylate kinase signature 81 97 7.6E-32 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 PRINTS PR00094 Adenylate kinase signature 4 17 7.6E-32 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 PRINTS PR00094 Adenylate kinase signature 160 175 7.6E-32 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 PRINTS PR00094 Adenylate kinase signature 177 191 7.6E-32 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 Pfam PF00406 Adenylate kinase 5 190 5.2E-60 T 29-03-2018 CFE88_RS00720 886379a00013de30cd008427993d792a 215 Hamap MF_00235 Adenylate kinase [adk]. 1 213 52.608 T 29-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 SUPERFAMILY SSF52540 1 214 1.36E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00720 886379a00013de30cd008427993d792a 215 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 29-03-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CFE88_RS00720 886379a00013de30cd008427993d792a 215 Gene3D G3DSA:3.40.50.300 1 215 1.0E-66 T 29-03-2018 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 Gene3D G3DSA:1.10.10.60 1 45 4.8E-15 T 29-03-2018 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 SUPERFAMILY SSF46689 3 73 9.98E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 7.0E-15 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 Gene3D G3DSA:1.10.10.60 46 173 1.1E-10 T 29-03-2018 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 SUPERFAMILY SSF48498 104 173 8.0E-12 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS10370 2311142d182bcee3acaaf0b67f769211 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.3E-11 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 Gene3D G3DSA:1.10.3860.10 1 417 3.9E-128 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 SUPERFAMILY SSF118215 10 411 1.7E-122 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 202 221 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 364 384 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 78 103 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 2.5E-38 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 Pfam PF00375 Sodium:dicarboxylate symporter family 11 410 1.1E-121 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 40 55 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CFE88_RS12265 c8e93877d450dd4aeab4369d65753ca0 426 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 29-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 SUPERFAMILY SSF63520 178 273 7.19E-22 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 SUPERFAMILY SSF63520 58 168 1.57E-26 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Gene3D G3DSA:2.30.24.10 1 68 2.0E-22 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Pfam PF00874 PRD domain 184 273 4.5E-18 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Pfam PF00874 PRD domain 84 165 3.5E-22 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Pfam PF03123 CAT RNA binding domain 4 60 1.1E-20 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 SUPERFAMILY SSF50151 4 57 5.1E-15 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Gene3D G3DSA:1.10.1790.10 69 166 1.0E-20 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 ProSitePatterns PS00654 PRD domain signature. 101 113 - T 29-03-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 SMART SM01061 4 62 9.0E-26 T 29-03-2018 IPR004341 CAT RNA-binding domain GO:0003723 CFE88_RS04440 4ed4a893b906f3259f6f1725f349b392 282 Gene3D G3DSA:1.10.1790.10 167 279 2.0E-19 T 29-03-2018 IPR011608 PRD domain GO:0006355 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Pfam PF00476 DNA polymerase family A 527 901 3.7E-156 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:1.10.150.20 212 290 2.5E-29 T 29-03-2018 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 766 777 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 788 799 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 729 754 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 850 863 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 629 651 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 652 667 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 675 698 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 705 718 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 PRINTS PR00868 DNA-polymerase family A (pol I) signature 820 836 4.4E-82 T 29-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SMART SM00474 329 494 6.2E-6 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Pfam PF01612 3'-5' exonuclease 360 436 1.9E-4 T 29-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 TIGRFAM TIGR00593 pola: DNA polymerase I 31 903 0.0 T 29-03-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SMART SM00475 29 289 1.7E-140 T 29-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 30 195 9.8E-54 T 29-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 200 289 6.1E-33 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SUPERFAMILY SSF88723 26 195 3.6E-53 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:3.30.70.370 631 721 1.2E-15 T 29-03-2018 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:3.30.70.370 729 903 1.4E-52 T 29-03-2018 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SMART SM00279 200 235 1.2E-16 T 29-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 ProSitePatterns PS00447 DNA polymerase family A signature. 729 748 - T 29-03-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SMART SM00482 660 867 4.3E-116 T 29-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:3.30.420.10 332 518 1.1E-20 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:3.40.50.1010 29 211 7.4E-66 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SUPERFAMILY SSF47807 199 313 2.09E-29 T 29-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 Gene3D G3DSA:1.20.1060.10 519 630 1.5E-32 T 29-03-2018 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SUPERFAMILY SSF56672 498 903 1.22E-152 T 29-03-2018 CFE88_RS02860 cec6d600667b3c61470da6721b06f526 903 SUPERFAMILY SSF53098 338 495 4.86E-34 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS09235 861e2f090522bae6560bf7589cb52b73 493 Gene3D G3DSA:3.40.50.300 103 325 3.9E-8 T 29-03-2018 CFE88_RS09235 861e2f090522bae6560bf7589cb52b73 493 SUPERFAMILY SSF52540 103 327 7.04E-7 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09235 861e2f090522bae6560bf7589cb52b73 493 Pfam PF05272 Virulence-associated protein E 132 326 2.5E-71 T 29-03-2018 IPR007936 Virulence-associated E CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 2.1E-18 T 29-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 SUPERFAMILY SSF51735 1 158 1.14E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 SUPERFAMILY SSF55347 137 302 3.6E-48 T 29-03-2018 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 Gene3D G3DSA:3.40.50.720 1 157 5.3E-31 T 29-03-2018 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 PIRSF PIRSF000098 1 417 9.4E-131 T 29-03-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 Gene3D G3DSA:3.30.360.10 158 298 8.1E-48 T 29-03-2018 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 29-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CFE88_RS04585 7b56b62328e888838f9aa739af30efbb 426 Pfam PF00742 Homoserine dehydrogenase 137 315 3.2E-59 T 29-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 SUPERFAMILY SSF53697 104 280 6.88E-32 T 29-03-2018 CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 Gene3D G3DSA:3.40.50.10490 80 277 4.5E-27 T 29-03-2018 CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 74 3.7E-18 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 SUPERFAMILY SSF46689 2 78 1.2E-17 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 Gene3D G3DSA:1.10.10.10 2 79 1.5E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00285 a7d5aa6a33df582b0b3baed5631e871e 290 Pfam PF01380 SIS domain 126 254 4.7E-19 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS07265 17769f2ed48410b94bcec151d3cfd5f1 77 Pfam PF03840 Preprotein translocase SecG subunit 5 75 4.9E-23 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CFE88_RS07265 17769f2ed48410b94bcec151d3cfd5f1 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 75 3.9E-24 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CFE88_RS07265 17769f2ed48410b94bcec151d3cfd5f1 77 PRINTS PR01651 Protein-export SecG membrane protein signature 56 77 1.7E-12 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CFE88_RS07265 17769f2ed48410b94bcec151d3cfd5f1 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.7E-12 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CFE88_RS07265 17769f2ed48410b94bcec151d3cfd5f1 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.7E-12 T 29-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 286 8.1E-62 T 29-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 4 418 2.1E-135 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 Gene3D G3DSA:3.20.20.10 34 270 1.5E-62 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 SUPERFAMILY SSF50621 262 419 8.16E-47 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 Gene3D G3DSA:2.40.37.10 271 421 3.8E-40 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 420 39.94 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 SUPERFAMILY SSF51419 26 288 2.62E-74 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 79 91 2.5E-17 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 59 77 2.5E-17 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 276 295 2.5E-17 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 2.5E-17 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 377 390 2.5E-17 T 29-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 163 172 2.3E-22 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 305 323 2.3E-22 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 387 409 2.3E-22 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 77 94 2.3E-22 T 29-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04235 1ab3ddd1eb9f761278410ae000fe7c4b 421 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 127 377 1.8E-18 T 29-03-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CFE88_RS03155 c854825b02506ec4e16ac715a0528ed9 331 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 6 327 1.8E-128 T 29-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS03155 c854825b02506ec4e16ac715a0528ed9 331 SUPERFAMILY SSF51679 4 327 2.62E-77 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS03155 c854825b02506ec4e16ac715a0528ed9 331 Pfam PF00296 Luciferase-like monooxygenase 20 296 1.9E-32 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS03155 c854825b02506ec4e16ac715a0528ed9 331 Gene3D G3DSA:3.20.20.30 10 331 2.9E-64 T 29-03-2018 CFE88_RS11670 45e92cf63ee6a5c4f8f213839b6ed42e 226 Gene3D G3DSA:3.30.1330.90 17 142 1.6E-21 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CFE88_RS11670 45e92cf63ee6a5c4f8f213839b6ed42e 226 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 7 200 8.7E-51 T 29-03-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CFE88_RS11670 45e92cf63ee6a5c4f8f213839b6ed42e 226 PIRSF PIRSF036692 5 226 3.7E-56 T 29-03-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CFE88_RS11670 45e92cf63ee6a5c4f8f213839b6ed42e 226 Pfam PF03315 Serine dehydratase beta chain 9 138 8.3E-11 T 29-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CFE88_RS11670 45e92cf63ee6a5c4f8f213839b6ed42e 226 SUPERFAMILY SSF143548 23 142 3.27E-28 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CFE88_RS04345 4be54183c4579485087abf25cff6fc64 254 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 215 5.9E-15 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS04345 4be54183c4579485087abf25cff6fc64 254 SUPERFAMILY SSF56784 3 222 7.9E-34 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS04345 4be54183c4579485087abf25cff6fc64 254 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 222 3.8E-32 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS04345 4be54183c4579485087abf25cff6fc64 254 Gene3D G3DSA:3.40.50.1000 2 254 2.4E-18 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 154 166 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 1 191 36.875 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 59 72 - T 29-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 Gene3D G3DSA:3.30.230.40 1 86 2.0E-25 T 29-03-2018 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 29 172 5.5E-59 T 29-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 SUPERFAMILY SSF54211 86 176 4.55E-32 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 Gene3D G3DSA:3.30.230.40 88 192 1.3E-27 T 29-03-2018 CFE88_RS10645 ca4ddb421f5f5724e3b5be749e660a78 192 SUPERFAMILY SSF54211 3 81 8.98E-26 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09835 4dfa27260450b6e8e710537049551519 301 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 3 278 16.304 T 29-03-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CFE88_RS09835 4dfa27260450b6e8e710537049551519 301 Pfam PF01867 CRISPR associated protein Cas1 7 231 8.7E-28 T 29-03-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CFE88_RS09835 4dfa27260450b6e8e710537049551519 301 TIGRFAM TIGR03639 cas1_NMENI: CRISPR-associated endonuclease Cas1, subtype II/NMENI 3 277 4.4E-84 T 29-03-2018 IPR019855 CRISPR-associated protein Cas1, NMENI subtype GO:0004520|GO:0043571|GO:0046872 CFE88_RS09835 4dfa27260450b6e8e710537049551519 301 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 6 282 4.9E-26 T 29-03-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 SUPERFAMILY SSF51735 136 303 7.3E-47 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 353 1.2E-82 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 SMART SM01002 148 297 3.7E-87 T 29-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 Gene3D G3DSA:3.40.50.720 199 371 6.7E-42 T 29-03-2018 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 Gene3D G3DSA:3.40.50.720 1 175 5.5E-41 T 29-03-2018 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 29-03-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 Reactome: R-HSA-71403 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 5.2E-45 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 29-03-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 Gene3D G3DSA:3.90.180.10 176 198 0.0047 T 29-03-2018 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 SMART SM01003 4 136 3.5E-73 T 29-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 PIRSF PIRSF000183 1 371 1.3E-206 T 29-03-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 SUPERFAMILY SSF52283 305 360 1.19E-66 T 29-03-2018 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 SUPERFAMILY SSF52283 1 136 1.19E-66 T 29-03-2018 CFE88_RS02775 f9740c3be54a9e6b6946b6f75f2f7e6f 371 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 1.2E-168 T 29-03-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 CFE88_RS09045 e4f1000fad9cb1438860de734bb6ebfd 128 Pfam PF00293 NUDIX domain 5 117 1.2E-14 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CFE88_RS09045 e4f1000fad9cb1438860de734bb6ebfd 128 ProSitePatterns PS00893 Nudix box signature. 31 52 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CFE88_RS09045 e4f1000fad9cb1438860de734bb6ebfd 128 SUPERFAMILY SSF55811 5 120 1.02E-21 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS09045 e4f1000fad9cb1438860de734bb6ebfd 128 Gene3D G3DSA:3.90.79.10 3 128 4.4E-19 T 29-03-2018 CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Pfam PF02769 AIR synthase related protein, C-terminal domain 207 360 1.9E-32 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 194 2.1E-22 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Pfam PF00586 AIR synthase related protein, N-terminal domain 452 557 5.5E-21 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 SUPERFAMILY SSF56042 568 726 2.54E-23 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Gene3D G3DSA:3.30.1330.10 22 199 7.7E-53 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 SUPERFAMILY SSF55326 18 200 7.48E-50 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Gene3D G3DSA:3.30.1330.10 414 562 8.7E-43 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 SUPERFAMILY SSF55326 393 562 2.22E-52 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 729 286.932 T 29-03-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Gene3D G3DSA:3.90.650.10 201 378 9.1E-25 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 Gene3D G3DSA:3.90.650.10 565 727 2.4E-17 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 SUPERFAMILY SSF56042 204 425 9.27E-53 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 23 724 6.0E-298 T 29-03-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06005 f2ac9490626b5fa93295e0fbd78cf8a4 729 PIRSF PIRSF001587 6 728 9.0E-305 T 29-03-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 Pfam PF02803 Thiolase, C-terminal domain 265 378 1.4E-32 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 Pfam PF00108 Thiolase, N-terminal domain 5 251 1.8E-53 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 Gene3D G3DSA:3.40.47.10 257 381 2.3E-21 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 Gene3D G3DSA:3.40.47.10 1 256 1.9E-36 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 377 5.8E-127 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 SUPERFAMILY SSF53901 1 257 9.36E-52 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 SUPERFAMILY SSF53901 264 378 2.88E-29 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 ProSitePatterns PS00737 Thiolases signature 2. 328 344 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CFE88_RS08375 ffe07953d6a59bf5e936800fb20a500e 382 PIRSF PIRSF000429 1 380 1.4E-108 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 CFE88_RS08630 301642af6b221aced2f689698336c740 466 SMART SM00840 351 417 5.3E-14 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 465 6.6E-178 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 Gene3D G3DSA:1.20.120.640 306 405 7.8E-15 T 29-03-2018 CFE88_RS08630 301642af6b221aced2f689698336c740 466 Pfam PF09190 DALR domain 351 414 1.4E-14 T 29-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 SUPERFAMILY SSF52374 2 310 3.75E-101 T 29-03-2018 CFE88_RS08630 301642af6b221aced2f689698336c740 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 221 242 2.2E-28 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.2E-28 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.2E-28 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 190 208 2.2E-28 T 29-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 466 38.074 T 29-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CFE88_RS08630 301642af6b221aced2f689698336c740 466 Gene3D G3DSA:3.40.50.620 1 304 1.6E-91 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08630 301642af6b221aced2f689698336c740 466 SUPERFAMILY SSF47323 338 465 1.44E-30 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08630 301642af6b221aced2f689698336c740 466 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 311 6.7E-133 T 29-03-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 CFE88_RS10625 b9a8ff532f2abac8abda3777390cd98a 138 SUPERFAMILY SSF69118 14 135 6.48E-16 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CFE88_RS10625 b9a8ff532f2abac8abda3777390cd98a 138 Gene3D G3DSA:1.20.1290.10 10 66 0.0013 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CFE88_RS10625 b9a8ff532f2abac8abda3777390cd98a 138 Gene3D G3DSA:1.20.1290.10 71 138 9.5E-5 T 29-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 SMART SM00226 2 144 1.1E-35 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 SUPERFAMILY SSF52788 1 145 1.96E-42 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 78 93 5.2E-17 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 5.2E-17 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 5.2E-17 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 118 133 5.2E-17 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 Gene3D G3DSA:3.40.50.2300 1 153 1.4E-45 T 29-03-2018 CFE88_RS01925 2c247f4c90f36cd81586656d3ff74dce 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 141 3.6E-34 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 12 371 2.5E-135 T 29-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 SUPERFAMILY SSF54631 249 372 4.09E-22 T 29-03-2018 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 Pfam PF00005 ABC transporter 19 163 4.6E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 Pfam PF00571 CBS domain 251 300 1.0E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 Pfam PF00571 CBS domain 314 363 1.1E-6 T 29-03-2018 IPR000644 CBS domain CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 SMART SM00116 257 305 0.0064 T 29-03-2018 IPR000644 CBS domain CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 SMART SM00116 317 366 0.0066 T 29-03-2018 IPR000644 CBS domain CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 SUPERFAMILY SSF52540 1 240 2.37E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 Gene3D G3DSA:3.40.50.300 1 250 6.6E-76 T 29-03-2018 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 Gene3D G3DSA:3.10.580.10 251 383 4.6E-22 T 29-03-2018 CFE88_RS10390 140af3055eeb0de96bc7220d8494a7f3 395 SMART SM00382 27 213 2.7E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Pfam PF00575 S1 RNA binding domain 276 348 8.3E-23 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Pfam PF00575 S1 RNA binding domain 191 262 6.6E-24 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Pfam PF00575 S1 RNA binding domain 105 173 9.9E-15 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Pfam PF00575 S1 RNA binding domain 14 79 7.6E-15 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 214 235 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 331 349 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 128 145 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 292 311 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 16 34 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 111 127 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 PRINTS PR00681 Ribosomal protein S1 signature 157 177 6.8E-41 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SUPERFAMILY SSF50249 262 356 2.36E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Gene3D G3DSA:2.40.50.140 6 96 4.0E-19 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Gene3D G3DSA:2.40.50.140 184 267 8.4E-25 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Gene3D G3DSA:2.40.50.140 97 179 2.3E-14 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 Gene3D G3DSA:2.40.50.140 279 378 8.4E-24 T 29-03-2018 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SUPERFAMILY SSF50249 192 276 4.6E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SUPERFAMILY SSF50249 93 176 1.72E-15 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SMART SM00316 277 348 1.5E-23 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SMART SM00316 14 90 1.6E-17 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SMART SM00316 106 173 2.9E-11 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SMART SM00316 192 262 2.1E-24 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS03855 686de6f459b9143cee8d285a3aa9679d 392 SUPERFAMILY SSF50249 10 115 3.88E-22 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 Gene3D G3DSA:1.10.1900.20 55 116 1.5E-30 T 29-03-2018 IPR035566 Ribosomal protein L20 C-terminal domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 6.0E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 6.0E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 6.0E-42 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.4E-51 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.637 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 7.0E-16 T 29-03-2018 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 SUPERFAMILY SSF74731 2 117 6.54E-50 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02920 9c288d71560f0f796ec8b9941cbc534e 118 Pfam PF00453 Ribosomal protein L20 3 109 4.3E-49 T 29-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 428 1.0E-25 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 SUPERFAMILY SSF48557 3 427 5.81E-141 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.4E-25 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 1.4E-25 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 1.4E-25 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 1.4E-25 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 426 1.9E-174 T 29-03-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 SMART SM00998 349 429 3.8E-39 T 29-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 Pfam PF00206 Lyase 6 286 3.7E-75 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 Gene3D G3DSA:1.10.275.10 2 92 2.5E-24 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 Gene3D G3DSA:1.10.40.30 349 428 1.6E-27 T 29-03-2018 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 Gene3D G3DSA:1.20.200.10 93 348 1.4E-81 T 29-03-2018 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 1.3E-8 T 29-03-2018 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 1.3E-8 T 29-03-2018 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 1.3E-8 T 29-03-2018 CFE88_RS01790 14670832469abcf80571d56190b0ae3c 431 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 1.3E-8 T 29-03-2018 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 Pfam PF14559 Tetratricopeptide repeat 26 63 1.8E-6 T 29-03-2018 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 Gene3D G3DSA:1.25.40.10 13 133 1.2E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 Pfam PF13181 Tetratricopeptide repeat 180 207 0.0066 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 SUPERFAMILY SSF48452 17 107 1.2E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 SUPERFAMILY SSF48452 182 304 1.2E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 SMART SM00028 176 209 0.36 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 SMART SM00028 15 48 0.0019 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 SMART SM00028 279 312 190.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS07360 e75a685a80f82065dc40288af5c7c81d 479 Gene3D G3DSA:1.25.40.10 134 376 7.5E-15 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 Pfam PF00334 Nucleoside diphosphate kinase 12 146 4.6E-59 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 11 146 37.68 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 PRINTS PR01243 Nucleoside diphosphate kinase signature 99 115 7.8E-49 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 PRINTS PR01243 Nucleoside diphosphate kinase signature 14 36 7.8E-49 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 PRINTS PR01243 Nucleoside diphosphate kinase signature 58 77 7.8E-49 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 PRINTS PR01243 Nucleoside diphosphate kinase signature 78 95 7.8E-49 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 PRINTS PR01243 Nucleoside diphosphate kinase signature 122 141 7.8E-49 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 SMART SM00562 11 148 1.1E-91 T 29-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 SUPERFAMILY SSF54919 11 159 4.19E-62 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS03890 c5f4c658a11a3343533cf818a849650b 159 Gene3D G3DSA:3.30.70.141 7 159 4.6E-62 T 29-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS04290 87a16d18b89e232efb06009ea0dbe865 308 SUPERFAMILY SSF161098 27 301 6.26E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04290 87a16d18b89e232efb06009ea0dbe865 308 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 24 304 9.0E-79 T 29-03-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CFE88_RS04290 87a16d18b89e232efb06009ea0dbe865 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 305 7.9E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04290 87a16d18b89e232efb06009ea0dbe865 308 Gene3D G3DSA:1.10.3720.10 12 299 1.5E-40 T 29-03-2018 CFE88_RS05925 f6d49cd5910f005efc2ef4515342414b 78 Gene3D G3DSA:3.40.30.10 2 77 4.6E-9 T 29-03-2018 CFE88_RS05925 f6d49cd5910f005efc2ef4515342414b 78 Pfam PF00462 Glutaredoxin 5 52 1.5E-6 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CFE88_RS05925 f6d49cd5910f005efc2ef4515342414b 78 SUPERFAMILY SSF52833 4 69 4.44E-10 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF81653 294 390 7.59E-27 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 687 703 4.8E-7 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 718 743 4.8E-7 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF55008 4 71 4.45E-16 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 ProSitePatterns PS01047 Heavy-metal-associated domain. 10 38 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 687 706 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 340 354 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 644 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 710 722 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 612 623 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 492 506 2.2E-27 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 72 136 4.9E-9 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 263 775 7.7E-97 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Gene3D G3DSA:3.40.1110.10 504 612 1.4E-31 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Gene3D G3DSA:3.40.50.1000 613 751 1.2E-41 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Pfam PF00403 Heavy-metal-associated domain 75 135 2.1E-15 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Pfam PF00403 Heavy-metal-associated domain 7 67 3.9E-14 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 ProSitePatterns PS01047 Heavy-metal-associated domain. 77 106 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 204 790 3.5E-189 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF81665 736 766 6.67E-14 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF81665 391 486 6.67E-14 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF81665 256 294 6.67E-14 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Gene3D G3DSA:1.20.1110.10 236 503 3.9E-53 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF55008 71 138 1.15E-20 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 223 789 4.9E-202 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 494 500 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF56784 544 787 1.48E-59 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 SUPERFAMILY SSF56784 490 510 1.48E-59 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Pfam PF00122 E1-E2 ATPase 291 471 1.9E-58 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Gene3D G3DSA:3.30.70.100 1 71 5.9E-18 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Gene3D G3DSA:3.30.70.100 72 158 4.1E-23 T 29-03-2018 CFE88_RS11490 7f453b0476de7e3c09ecf6ed3cf95930 794 Pfam PF00702 haloacid dehalogenase-like hydrolase 488 701 5.6E-49 T 29-03-2018 CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 6.5E-22 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 23.84 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 Gene3D G3DSA:3.10.430.100 63 147 5.5E-29 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 SUPERFAMILY SSF55653 58 147 7.06E-26 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 SUPERFAMILY SSF55658 1 55 5.76E-17 T 29-03-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 7.7E-44 T 29-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 6.2E-28 T 29-03-2018 IPR020069 Ribosomal protein L9, C-terminal CFE88_RS09770 8b10965419175c396d15309f5154cccd 148 Gene3D G3DSA:3.40.5.10 1 49 9.7E-24 T 29-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 SUPERFAMILY SSF53187 317 403 1.03E-59 T 29-03-2018 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 SUPERFAMILY SSF53187 7 176 1.03E-59 T 29-03-2018 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 Gene3D G3DSA:3.40.630.10 4 292 1.5E-64 T 29-03-2018 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 SUPERFAMILY SSF55031 253 305 8.52E-17 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 SUPERFAMILY SSF55031 177 225 8.52E-17 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 Gene3D G3DSA:3.40.630.10 293 403 3.3E-5 T 29-03-2018 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 Pfam PF01546 Peptidase family M20/M25/M40 69 399 6.9E-40 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 Pfam PF07687 Peptidase dimerisation domain 173 304 1.0E-23 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 67 76 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 10 394 1.3E-91 T 29-03-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10360 b15a83de4faaf1060fe44611d5b2d7c5 405 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 103 142 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Hamap MF_00195 GTPase Der [der]. 3 436 40.8 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Gene3D G3DSA:1.20.120.430 242 355 2.2E-14 T 29-03-2018 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Gene3D G3DSA:1.20.120.430 1 67 9.2E-17 T 29-03-2018 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Pfam PF01926 50S ribosome-binding GTPase 6 120 5.8E-26 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Pfam PF01926 50S ribosome-binding GTPase 178 295 4.1E-27 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Gene3D G3DSA:3.30.300.20 356 434 9.1E-34 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 431 3.8E-181 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 PIRSF PIRSF006485 2 436 3.8E-177 T 29-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 175 326 6.0E-27 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 125 2.3E-23 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 353 432 2.3E-31 T 29-03-2018 IPR032859 GTPase Der, C-terminal KH-domain-like CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 SUPERFAMILY SSF52540 138 434 2.87E-70 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 SUPERFAMILY SSF52540 4 166 2.74E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 Gene3D G3DSA:1.20.120.430 68 241 5.3E-47 T 29-03-2018 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 248 266 3.5E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03860 9085000509565d1ed1647fdfa47dbe09 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 178 198 3.5E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 Pfam PF03441 FAD binding domain of DNA photolyase 256 454 3.6E-77 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 SUPERFAMILY SSF52425 6 179 6.67E-21 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 Gene3D G3DSA:1.25.40.80 126 273 4.9E-26 T 29-03-2018 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 Gene3D G3DSA:1.10.579.10 274 457 3.6E-68 T 29-03-2018 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 SUPERFAMILY SSF48173 185 455 3.14E-94 T 29-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 Pfam PF00875 DNA photolyase 11 156 7.7E-11 T 29-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 PRINTS PR00147 DNA photolyase signature 325 343 5.6E-26 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 PRINTS PR00147 DNA photolyase signature 305 321 5.6E-26 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 PRINTS PR00147 DNA photolyase signature 364 378 5.6E-26 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CFE88_RS07775 a5e82bf53f2be504587f4fc64487a00e 457 PRINTS PR00147 DNA photolyase signature 137 153 5.6E-26 T 29-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CFE88_RS06285 990dfd64b7e65620f7c8371ba97ac2ba 397 SUPERFAMILY SSF103473 12 395 5.89E-42 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS06285 990dfd64b7e65620f7c8371ba97ac2ba 397 Gene3D G3DSA:1.20.1250.20 3 198 5.5E-19 T 29-03-2018 CFE88_RS06285 990dfd64b7e65620f7c8371ba97ac2ba 397 Pfam PF07690 Major Facilitator Superfamily 19 353 4.9E-31 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS06285 990dfd64b7e65620f7c8371ba97ac2ba 397 Gene3D G3DSA:1.20.1250.20 199 394 1.9E-20 T 29-03-2018 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 Pfam PF00005 ABC transporter 26 184 1.1E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 Gene3D G3DSA:3.40.50.300 2 335 1.2E-76 T 29-03-2018 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 320 1.9E-17 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 SUPERFAMILY SSF52540 5 255 1.39E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 299 1.3E-11 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CFE88_RS06610 e68e025f9d75f79b446eddfa831c0e37 359 SMART SM00382 34 234 1.3E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS10170 50c704929283184de2b3801a621b605b 503 SUPERFAMILY SSF53756 147 501 1.79E-31 T 29-03-2018 CFE88_RS10170 50c704929283184de2b3801a621b605b 503 Hamap MF_01472 Glycosyltransferase Gtf1 [gtf1]. 2 502 46.385 T 29-03-2018 IPR014267 Glycosyltransferase Gtf1 GO:0016757 CFE88_RS10170 50c704929283184de2b3801a621b605b 503 Gene3D G3DSA:3.40.50.2000 310 477 4.8E-21 T 29-03-2018 CFE88_RS10170 50c704929283184de2b3801a621b605b 503 Pfam PF00534 Glycosyl transferases group 1 317 458 4.9E-20 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS10170 50c704929283184de2b3801a621b605b 503 TIGRFAM TIGR02918 TIGR02918: accessory Sec system glycosylation protein GtfA 1 500 1.2E-241 T 29-03-2018 IPR014267 Glycosyltransferase Gtf1 GO:0016757 CFE88_RS02755 ca5bd8d60e55d957eb38a951e104daa1 164 SUPERFAMILY SSF52833 1 159 5.23E-41 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS02755 ca5bd8d60e55d957eb38a951e104daa1 164 ProSitePatterns PS01265 Tpx family signature. 82 93 - T 29-03-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 CFE88_RS02755 ca5bd8d60e55d957eb38a951e104daa1 164 Gene3D G3DSA:3.40.30.10 4 163 9.7E-22 T 29-03-2018 CFE88_RS02755 ca5bd8d60e55d957eb38a951e104daa1 164 Hamap MF_00269 Probable thiol peroxidase [tpx]. 3 162 35.575 T 29-03-2018 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 CFE88_RS02755 ca5bd8d60e55d957eb38a951e104daa1 164 Pfam PF08534 Redoxin 20 157 8.1E-23 T 29-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Pfam PF13361 UvrD-like helicase C-terminal domain 281 656 1.5E-14 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 SUPERFAMILY SSF52540 7 228 4.78E-5 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Gene3D G3DSA:3.40.50.300 259 686 3.5E-33 T 29-03-2018 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 SUPERFAMILY SSF52540 286 680 3.93E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 1 1153 56.534 T 29-03-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 1 1153 0.0 T 29-03-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Pfam PF12705 PD-(D/E)XK nuclease superfamily 773 1122 2.1E-50 T 29-03-2018 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Gene3D G3DSA:3.40.50.300 1 115 4.3E-25 T 29-03-2018 CFE88_RS06685 a0275a6026c48523d3d64ec86cd56623 1156 Gene3D G3DSA:3.40.50.300 116 258 1.0E-26 T 29-03-2018 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 25 78 4.0E-25 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 TIGRFAM TIGR00165 S18: ribosomal protein bS18 11 77 3.4E-38 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 PRINTS PR00974 Ribosomal protein S18 family signature 43 50 3.5E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 PRINTS PR00974 Ribosomal protein S18 family signature 51 65 3.5E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 PRINTS PR00974 Ribosomal protein S18 family signature 65 75 3.5E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 PRINTS PR00974 Ribosomal protein S18 family signature 33 43 3.5E-22 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 Gene3D G3DSA:4.10.640.10 3 80 1.2E-35 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 ProSitePatterns PS00057 Ribosomal protein S18 signature. 26 49 - T 29-03-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 SUPERFAMILY SSF46911 5 78 8.63E-32 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 7 78 23.37 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09460 968cfe4c829660076a4fa5d6ab783878 80 Pfam PF01084 Ribosomal protein S18 23 73 1.8E-29 T 29-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00325 225fe80db37529108213770cbca16fc7 316 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 90 235 8.8E-47 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS00325 225fe80db37529108213770cbca16fc7 316 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 90 235 1.4E-47 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 10 398 1.3E-86 T 29-03-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 SUPERFAMILY SSF55031 255 319 1.09E-17 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 SUPERFAMILY SSF55031 176 219 1.09E-17 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 Pfam PF01546 Peptidase family M20/M25/M40 69 406 5.4E-35 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 103 142 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 Gene3D G3DSA:3.40.630.10 5 307 3.1E-64 T 29-03-2018 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 SUPERFAMILY SSF53187 323 410 8.47E-56 T 29-03-2018 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 SUPERFAMILY SSF53187 7 176 8.47E-56 T 29-03-2018 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 67 76 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS10855 5b43f8d193a4c52f795358caaebdfa2c 414 Pfam PF07687 Peptidase dimerisation domain 173 308 6.2E-23 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 SMART SM00363 16 75 1.4E-14 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 Gene3D G3DSA:3.10.290.10 6 73 8.2E-18 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 SUPERFAMILY SSF55174 15 114 9.94E-19 T 29-03-2018 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 Pfam PF01479 S4 domain 16 62 4.1E-14 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 Gene3D G3DSA:3.30.2350.10 80 304 2.0E-71 T 29-03-2018 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 Pfam PF00849 RNA pseudouridylate synthase 90 242 5.2E-35 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 299 4.9E-100 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05460 022f42ee0f4745b2848043ed08239a90 305 SUPERFAMILY SSF55120 74 299 5.92E-78 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 SUPERFAMILY SSF51735 102 283 3.64E-57 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Gene3D G3DSA:3.40.50.720 1 113 2.8E-33 T 29-03-2018 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 4 527 2.4E-211 T 29-03-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Gene3D G3DSA:3.40.50.720 114 285 4.9E-55 T 29-03-2018 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 314 5.4E-34 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Gene3D G3DSA:3.30.70.260 451 525 3.0E-16 T 29-03-2018 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 SUPERFAMILY SSF55021 445 524 2.15E-17 T 29-03-2018 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 282 2.7E-61 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 SUPERFAMILY SSF143548 323 451 1.15E-28 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 SUPERFAMILY SSF52283 12 130 6.99E-34 T 29-03-2018 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Gene3D G3DSA:3.30.1330.90 319 450 2.1E-30 T 29-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 CFE88_RS02700 138fc33f103fe3182134c50a8a155007 531 Pfam PF01842 ACT domain 459 517 1.7E-7 T 29-03-2018 IPR002912 ACT domain CFE88_RS07970 4e5ba12388c984af53e9a526b199d0d7 349 Gene3D G3DSA:3.40.50.1820 19 325 1.3E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07970 4e5ba12388c984af53e9a526b199d0d7 349 SUPERFAMILY SSF53474 49 318 1.55E-50 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07970 4e5ba12388c984af53e9a526b199d0d7 349 Pfam PF07859 alpha/beta hydrolase fold 84 292 2.7E-29 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 SUPERFAMILY SSF54686 1 137 2.22E-58 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 39.927 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 PRINTS PR00060 Ribosomal protein L16 signature 24 36 6.8E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 PRINTS PR00060 Ribosomal protein L16 signature 58 87 6.8E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 PRINTS PR00060 Ribosomal protein L16 signature 88 117 6.8E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 PRINTS PR00060 Ribosomal protein L16 signature 42 53 6.8E-40 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 9.6E-51 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 Gene3D G3DSA:3.90.1170.10 3 139 3.0E-52 T 29-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 7.8E-61 T 29-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00650 c21c96ca571f266a4400b0a44a782715 144 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 29-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Pfam PF00310 Glutamine amidotransferases class-II 20 429 8.3E-157 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Pfam PF01493 GXGXG motif 1231 1413 3.8E-66 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Gene3D G3DSA:3.60.20.10 20 438 5.2E-129 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 SUPERFAMILY SSF69336 1199 1462 6.67E-75 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Pfam PF01645 Conserved region in glutamate synthase 786 1151 2.1E-153 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Gene3D G3DSA:2.160.20.60 1206 1477 2.0E-86 T 29-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 SUPERFAMILY SSF51395 451 1168 4.58E-236 T 29-03-2018 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Pfam PF04898 Glutamate synthase central domain 457 732 3.8E-99 T 29-03-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 SUPERFAMILY SSF56235 20 432 1.47E-126 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Gene3D G3DSA:3.20.20.70 769 1205 1.5E-150 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS09025 af47bbe4a939e5b19ac71cdc2ae1e4a7 1498 Gene3D G3DSA:3.20.20.70 439 768 9.3E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 SUPERFAMILY SSF51306 23 171 1.83E-41 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 Pfam PF00717 Peptidase S24-like 31 99 4.4E-13 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 125 144 2.9E-14 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 73 85 2.9E-14 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 24 40 2.9E-14 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 Gene3D G3DSA:2.10.109.10 20 173 1.3E-36 T 29-03-2018 CFE88_RS06695 2775a9b8aa4c7201f50a16004cb5b1f5 173 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 9 165 2.1E-45 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Pfam PF17191 RecG wedge domain 16 172 8.4E-18 T 29-03-2018 IPR033454 RecG, wedge domain CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Gene3D G3DSA:3.40.50.300 242 443 7.5E-35 T 29-03-2018 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Gene3D G3DSA:2.40.50.140 58 145 1.8E-7 T 29-03-2018 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 30 651 1.5E-226 T 29-03-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Pfam PF00270 DEAD/DEAH box helicase 263 418 3.7E-17 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Pfam PF00271 Helicase conserved C-terminal domain 462 575 6.4E-20 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 SUPERFAMILY SSF52540 439 647 6.71E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 SUPERFAMILY SSF50249 11 174 1.27E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 SMART SM00487 257 446 3.5E-31 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 SMART SM00490 492 576 1.1E-22 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Gene3D G3DSA:3.40.50.300 444 616 8.6E-36 T 29-03-2018 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 Gene3D G3DSA:1.10.150.20 11 57 3.0E-4 T 29-03-2018 CFE88_RS05310 8ad96da55a4c292dfd923ce161d5db5b 682 SUPERFAMILY SSF52540 177 439 1.58E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 Gene3D G3DSA:3.30.390.50 247 328 1.7E-23 T 29-03-2018 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 SUPERFAMILY SSF55681 4 241 8.52E-79 T 29-03-2018 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 Gene3D G3DSA:3.30.930.10 2 246 8.2E-72 T 29-03-2018 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 243 326 8.2E-26 T 29-03-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 Pfam PF03099 Biotin/lipoate A/B protein ligase family 47 155 2.8E-9 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 2 320 5.0E-114 T 29-03-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 CFE88_RS06230 ec6ffaed0542bc955422275641f086d8 328 SUPERFAMILY SSF82649 243 327 4.19E-24 T 29-03-2018 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 SUPERFAMILY SSF48256 5 372 1.19E-131 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 ProSitePatterns PS00480 Citrate synthase signature. 255 267 - T 29-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 6 372 3.2E-151 T 29-03-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 Gene3D G3DSA:1.10.580.10 14 235 1.4E-74 T 29-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 Gene3D G3DSA:1.10.230.10 236 319 4.1E-34 T 29-03-2018 IPR016143 Citrate synthase-like, small alpha subdomain CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 195 223 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 248 268 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 173 188 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 124 137 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 325 339 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PRINTS PR00143 Citrate synthase signature 305 321 2.4E-39 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 Pfam PF00285 Citrate synthase, C-terminal domain 7 355 2.5E-128 T 29-03-2018 IPR002020 Citrate synthase GO:0046912 CFE88_RS02840 b5573eb672ea91ab7aeb503f5cb1f0c0 373 PIRSF PIRSF001369 1 373 8.0E-149 T 29-03-2018 IPR024176 Citrate synthase, bacterial-type CFE88_RS11140 4d515d1b80db98e6dcf6bd7b8f7e61fa 249 Pfam PF00005 ABC transporter 22 170 1.5E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS11140 4d515d1b80db98e6dcf6bd7b8f7e61fa 249 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS11140 4d515d1b80db98e6dcf6bd7b8f7e61fa 249 SMART SM00382 31 218 1.4E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS11140 4d515d1b80db98e6dcf6bd7b8f7e61fa 249 SUPERFAMILY SSF52540 2 223 2.26E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11140 4d515d1b80db98e6dcf6bd7b8f7e61fa 249 Gene3D G3DSA:3.40.50.300 1 241 1.3E-60 T 29-03-2018 CFE88_RS11235 563d95a96832d6c42dc3cf58ccd660a0 299 Pfam PF01925 Sulfite exporter TauE/SafE 8 245 1.5E-36 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CFE88_RS09760 72a8da44739223d8f4d583e7a0aef315 308 Pfam PF09991 Predicted membrane protein (DUF2232) 20 298 2.1E-63 T 29-03-2018 IPR018710 Protein of unknown function DUF2232 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 Gene3D G3DSA:1.10.287.10 2 89 1.4E-35 T 29-03-2018 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 SUPERFAMILY SSF47060 3 89 2.62E-36 T 29-03-2018 IPR009068 S15/NS1, RNA-binding CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 6.0E-40 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.793 T 29-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 5.0E-39 T 29-03-2018 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 Pfam PF00312 Ribosomal protein S15 8 88 8.7E-38 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05080 5dd11b00a08ab07df4410c935b4aff3e 89 SMART SM01387 8 88 3.8E-51 T 29-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 Pfam PF01245 Ribosomal protein L19 6 114 2.2E-52 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 PRINTS PR00061 Ribosomal protein L19 signature 6 35 2.2E-42 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 PRINTS PR00061 Ribosomal protein L19 signature 90 115 2.2E-42 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 PRINTS PR00061 Ribosomal protein L19 signature 36 65 2.2E-42 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 PIRSF PIRSF002191 1 116 4.5E-51 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 SUPERFAMILY SSF50104 3 115 2.61E-48 T 29-03-2018 IPR008991 Translation protein SH3-like domain CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 4 116 32.608 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 5 115 1.9E-50 T 29-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05240 4b491c30e616fc93b4c5cfcf18ae3840 116 ProSitePatterns PS01015 Ribosomal protein L19 signature. 88 103 - T 29-03-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS12670 368eb7814873da0930b7721fd8b9b644 31 Pfam PF13955 Toxin Fst, type I toxin-antitoxin system 6 26 5.7E-13 T 29-03-2018 IPR025882 Toxin Fst CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 263 667 2.7E-167 T 29-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Pfam PF01336 OB-fold nucleic acid binding domain 918 983 1.3E-6 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Pfam PF02811 PHP domain 4 120 1.3E-25 T 29-03-2018 IPR004013 PHP domain GO:0003824 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Pfam PF14579 Helix-hairpin-helix motif 741 828 4.3E-24 T 29-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Gene3D G3DSA:1.10.150.280 725 825 3.9E-7 T 29-03-2018 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 SMART SM00481 3 70 2.5E-16 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Gene3D G3DSA:2.40.50.140 892 987 3.3E-8 T 29-03-2018 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 157 946 8.5E-265 T 29-03-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 SUPERFAMILY SSF160975 765 810 2.48E-5 T 29-03-2018 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 Gene3D G3DSA:3.20.20.140 1 460 4.7E-26 T 29-03-2018 CFE88_RS02805 199796cec86ecc9a41156f63a85a0bd1 1065 SUPERFAMILY SSF89550 3 79 2.16E-9 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 6.2E-35 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 6.2E-35 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 6.2E-35 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 6.2E-35 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 460 89.56 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Gene3D G3DSA:1.10.40.30 416 460 4.5E-27 T 29-03-2018 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Pfam PF00206 Lyase 11 340 8.8E-114 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 2.7E-5 T 29-03-2018 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 2.7E-5 T 29-03-2018 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 SUPERFAMILY SSF48557 3 458 1.37E-149 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Pfam PF10415 Fumarase C C-terminus 406 458 4.2E-26 T 29-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Gene3D G3DSA:1.10.275.10 1 136 8.7E-59 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 458 2.7E-229 T 29-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 Gene3D G3DSA:1.20.200.10 137 415 2.0E-85 T 29-03-2018 CFE88_RS02225 018943287a9153ca4abc642c94992e3b 461 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CFE88_RS03535 734101310ec5875aef24118ae28e3c27 324 Gene3D G3DSA:3.30.450.90 1 105 1.1E-23 T 29-03-2018 CFE88_RS03535 734101310ec5875aef24118ae28e3c27 324 Gene3D G3DSA:3.40.50.300 119 318 2.7E-21 T 29-03-2018 CFE88_RS03535 734101310ec5875aef24118ae28e3c27 324 Pfam PF00437 Type II/IV secretion system protein 8 265 1.5E-52 T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CFE88_RS03535 734101310ec5875aef24118ae28e3c27 324 SUPERFAMILY SSF52540 4 282 4.95E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03535 734101310ec5875aef24118ae28e3c27 324 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 196 210 - T 29-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SUPERFAMILY SSF51395 3 343 2.98E-94 T 29-03-2018 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SMART SM00900 399 473 2.5E-16 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Gene3D G3DSA:3.50.50.60 471 789 2.1E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Gene3D G3DSA:3.90.700.10 806 946 1.5E-40 T 29-03-2018 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SUPERFAMILY SSF51905 483 551 8.82E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SUPERFAMILY SSF51905 947 1003 8.82E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SUPERFAMILY SSF51905 600 808 8.82E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 TIGRFAM TIGR01813 flavo_cyto_c: flavocytochrome c 631 1000 6.2E-91 T 29-03-2018 IPR010960 Flavocytochrome c GO:0000104|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Gene3D G3DSA:3.20.20.70 1 376 1.1E-97 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Pfam PF04205 FMN-binding domain 399 471 3.2E-10 T 29-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Pfam PF00890 FAD binding domain 500 548 3.1E-9 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Pfam PF00890 FAD binding domain 607 988 6.9E-57 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 338 3.1E-77 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CFE88_RS10260 b775628533ceec53328f50dd9ed5201b 1005 SUPERFAMILY SSF56425 793 944 8.55E-37 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 TIGRFAM TIGR00109 hemH: ferrochelatase 3 306 1.8E-80 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 SUPERFAMILY SSF53800 3 306 2.29E-82 T 29-03-2018 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 Gene3D G3DSA:3.40.50.1400 156 288 6.9E-36 T 29-03-2018 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 Hamap MF_00323 Ferrochelatase [hemH]. 3 307 31.126 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 Pfam PF00762 Ferrochelatase 5 306 9.0E-79 T 29-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 Gene3D G3DSA:3.40.50.1400 1 155 8.1E-27 T 29-03-2018 CFE88_RS02330 853b400783914b28d647481d4cfacee8 307 ProSitePatterns PS00534 Ferrochelatase signature. 176 195 - T 29-03-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 Gene3D G3DSA:1.10.287.700 949 1072 5.8E-11 T 29-03-2018 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 Gene3D G3DSA:1.10.287.700 877 948 4.1E-13 T 29-03-2018 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 SUPERFAMILY SSF48371 746 845 3.59E-8 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 SUPERFAMILY SSF48371 538 671 3.59E-8 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 SUPERFAMILY SSF48371 930 986 3.59E-8 T 29-03-2018 IPR016024 Armadillo-type fold GO:0005488 CFE88_RS04735 6a7feb19fd77392ca3909bbd7b45a7d9 1139 Gene3D G3DSA:1.20.5.1230 4 856 3.3E-10 T 29-03-2018 CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 SUPERFAMILY SSF55594 1 83 3.01E-28 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 29-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 29-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 Gene3D G3DSA:3.30.1340.10 1 88 4.1E-33 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 3.1E-34 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 8.4E-31 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.8E-26 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.8E-26 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS05935 498d081c61ab838a994926792a228c4d 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.8E-26 T 29-03-2018 IPR000032 Phosphocarrier protein HPr-like CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 Gene3D G3DSA:3.40.50.720 53 256 1.4E-37 T 29-03-2018 CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 Gene3D G3DSA:3.40.50.720 1 52 0.0027 T 29-03-2018 CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 SUPERFAMILY SSF51735 5 254 4.82E-64 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 PIRSF PIRSF000094 1 256 3.9E-95 T 29-03-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS06305 e43639ba4bcde396fdbed4cc7cd814a9 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 1.9E-82 T 29-03-2018 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 ProSitePatterns PS01117 MarR-type HTH domain signature. 90 124 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 SMART SM00347 49 151 3.1E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 107 1.4E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 141 161 1.4E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 127 1.4E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 91 1.4E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 SUPERFAMILY SSF46785 22 166 1.77E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 Gene3D G3DSA:1.10.10.10 36 129 2.3E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 Pfam PF01047 MarR family 56 115 1.6E-13 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS09430 7ce19278ad1eda5d0167d59a8673f5fc 172 Gene3D G3DSA:1.10.287.100 130 168 2.8E-4 T 29-03-2018 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 Gene3D G3DSA:3.30.70.260 246 339 9.4E-12 T 29-03-2018 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 PIRSF PIRSF000726 61 410 1.4E-90 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 PIRSF PIRSF000726 12 70 4.3E-12 T 29-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 71 409 6.2E-91 T 29-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 SUPERFAMILY SSF53633 13 251 1.83E-58 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 Gene3D G3DSA:3.30.70.260 340 410 1.6E-11 T 29-03-2018 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 SUPERFAMILY SSF55021 258 332 5.5E-9 T 29-03-2018 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 29-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 Pfam PF13840 ACT domain 343 404 2.3E-6 T 29-03-2018 IPR027795 GATS-like ACT domain CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 Pfam PF00696 Amino acid kinase family 13 237 3.8E-39 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 Gene3D G3DSA:3.40.1160.10 11 245 6.0E-51 T 29-03-2018 CFE88_RS04270 ff07cecfaf6b3da3f6c8723f8a39e5d0 410 SUPERFAMILY SSF55021 343 409 1.02E-12 T 29-03-2018 CFE88_RS02985 5c456204c82f71254dd7cf6c41927e2f 186 Pfam PF03352 Methyladenine glycosylase 8 181 3.1E-63 T 29-03-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 CFE88_RS02985 5c456204c82f71254dd7cf6c41927e2f 186 SUPERFAMILY SSF48150 2 183 3.14E-66 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CFE88_RS02985 5c456204c82f71254dd7cf6c41927e2f 186 Gene3D G3DSA:1.10.340.30 1 182 6.5E-64 T 29-03-2018 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 109 125 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 37 51 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 317 328 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 163 176 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 369 386 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PRINTS PR00148 Enolase signature 340 354 6.7E-48 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 Gene3D G3DSA:3.30.390.10 3 127 1.9E-53 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 Pfam PF00113 Enolase, C-terminal TIM barrel domain 143 429 6.9E-131 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 Hamap MF_00318 Enolase [eno]. 2 417 44.74 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 Gene3D G3DSA:3.20.20.120 130 434 2.4E-100 T 29-03-2018 IPR029065 Enolase C-terminal domain-like CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 SUPERFAMILY SSF54826 4 143 1.48E-58 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 Pfam PF03952 Enolase, N-terminal domain 4 136 9.1E-61 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 431 2.3E-209 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 SMART SM01192 141 431 2.4E-215 T 29-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 ProSitePatterns PS00164 Enolase signature. 340 353 - T 29-03-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 PIRSF PIRSF001400 1 431 2.0E-188 T 29-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 SUPERFAMILY SSF51604 142 431 5.52E-127 T 29-03-2018 IPR029065 Enolase C-terminal domain-like CFE88_RS07275 0118d36bc649d13bc6f7432d278034db 434 SMART SM01193 4 136 5.3E-96 T 29-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 31 254 3.4E-91 T 29-03-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Gene3D G3DSA:1.10.10.10 7 30 0.076 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Gene3D G3DSA:1.10.10.10 106 158 6.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 SUPERFAMILY SSF88659 108 182 4.23E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Gene3D G3DSA:1.10.1740.10 31 102 1.9E-19 T 29-03-2018 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 59 72 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 SUPERFAMILY SSF88659 180 254 2.24E-15 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Pfam PF04542 Sigma-70 region 2 35 104 9.3E-17 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Gene3D G3DSA:1.10.10.10 182 256 1.8E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Pfam PF04545 Sigma-70, region 4 205 252 2.8E-15 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 PRINTS PR00046 Major sigma-70 factor signature 59 72 1.5E-9 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 PRINTS PR00046 Major sigma-70 factor signature 224 239 1.5E-9 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 PRINTS PR00046 Major sigma-70 factor signature 239 250 1.5E-9 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 PRINTS PR00046 Major sigma-70 factor signature 207 219 1.5E-9 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 Pfam PF04539 Sigma-70 region 3 117 188 1.1E-16 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 SUPERFAMILY SSF88946 8 104 3.01E-26 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 224 250 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 253 2.4E-37 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01420 1ff3177a832a4b365159b055e76fb86a 256 TIGRFAM TIGR02941 Sigma_B: RNA polymerase sigma-B factor 3 255 1.8E-140 T 29-03-2018 IPR014288 RNA polymerase sigma-B factor GO:0016987 CFE88_RS09655 a4b5f1bf405088533dbeeb99f0900b01 131 Pfam PF11345 Protein of unknown function (DUF3147) 4 111 2.5E-40 T 29-03-2018 IPR021493 Protein of unknown function DUF3147 CFE88_RS00085 660558d6d63367b5dc139fc679bf7210 151 Pfam PF12802 MarR family 34 93 2.6E-9 T 29-03-2018 CFE88_RS00085 660558d6d63367b5dc139fc679bf7210 151 SUPERFAMILY SSF46785 16 145 1.96E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00085 660558d6d63367b5dc139fc679bf7210 151 SMART SM00347 29 130 6.3E-12 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS00085 660558d6d63367b5dc139fc679bf7210 151 Gene3D G3DSA:1.10.10.10 1 151 3.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 194 205 - T 29-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 Pfam PF02926 THUMP domain 22 153 2.7E-11 T 29-03-2018 IPR004114 THUMP domain GO:0003723 CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 Pfam PF01170 Putative RNA methylase family UPF0020 161 367 1.9E-56 T 29-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 SUPERFAMILY SSF53335 253 373 3.17E-40 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 SUPERFAMILY SSF53335 142 216 3.17E-40 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 Gene3D G3DSA:3.40.50.150 159 378 1.5E-36 T 29-03-2018 CFE88_RS04005 d8c3f4c7c3da49a54be0283af490d4d8 378 SMART SM00981 55 153 1.8E-6 T 29-03-2018 IPR004114 THUMP domain GO:0003723 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 Gene3D G3DSA:3.40.50.2000 185 342 1.2E-22 T 29-03-2018 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 354 26.478 T 29-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 189 340 3.1E-24 T 29-03-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 SUPERFAMILY SSF53756 3 352 3.14E-84 T 29-03-2018 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 Gene3D G3DSA:3.40.50.2000 2 184 1.0E-31 T 29-03-2018 CFE88_RS04120 b2de1ccaa0c90c621234e8a148dd0f1c 357 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 144 5.8E-39 T 29-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Gene3D G3DSA:3.40.50.300 5 288 4.8E-54 T 29-03-2018 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Pfam PF00005 ABC transporter 20 186 3.5E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Pfam PF00005 ABC transporter 337 469 3.9E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 SMART SM00382 343 520 5.2E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 SMART SM00382 28 231 1.2E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Pfam PF16326 ABC transporter C-terminal domain 558 623 3.9E-12 T 29-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 SUPERFAMILY SSF52540 5 94 3.87E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 SUPERFAMILY SSF52540 127 241 3.87E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 SUPERFAMILY SSF52540 310 529 2.44E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Pfam PF12848 ABC transporter 225 299 5.3E-13 T 29-03-2018 IPR032781 ABC-transporter extension domain CFE88_RS07595 e019f777113772e8d0d348fac5b5bd76 627 Gene3D G3DSA:3.40.50.300 289 551 5.1E-53 T 29-03-2018 CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 Hamap MF_00082_B Acetylglutamate kinase [argB]. 1 244 24.394 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 SUPERFAMILY SSF53633 1 243 4.19E-50 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 Pfam PF00696 Amino acid kinase family 3 234 2.2E-40 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 232 1.0E-60 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 Gene3D G3DSA:3.40.1160.10 1 245 1.2E-41 T 29-03-2018 CFE88_RS03635 0b65ff618689df3df3f4cb8a2d5b9278 245 PIRSF PIRSF000728 1 243 2.1E-72 T 29-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 Gene3D G3DSA:3.40.309.10 302 489 5.1E-63 T 29-03-2018 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 Pfam PF00171 Aldehyde dehydrogenase family 49 510 8.3E-158 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 Hamap MF_00733 1-pyrroline-5-carboxylate dehydrogenase [rocA]. 1 514 71.308 T 29-03-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 285 292 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 SUPERFAMILY SSF53720 4 510 3.53E-154 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 Gene3D G3DSA:3.40.605.10 23 301 4.2E-82 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 5 514 2.2E-226 T 29-03-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 CFE88_RS11505 f105972eaf3ccf46d7dee12d2fb43438 514 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 Gene3D G3DSA:3.90.170.10 265 427 9.5E-68 T 29-03-2018 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 SMART SM00788 3 422 2.5E-287 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 424 9.2E-182 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 29-03-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 Gene3D G3DSA:3.40.440.10 1 149 2.7E-52 T 29-03-2018 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 Gene3D G3DSA:3.40.440.10 150 264 3.0E-26 T 29-03-2018 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 SUPERFAMILY SSF52540 1 426 3.19E-172 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 29-03-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 427 204.336 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS09780 8c91a1f6711b217033a1d36fec17a0bb 427 Pfam PF00709 Adenylosuccinate synthetase 4 420 7.0E-179 T 29-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CFE88_RS10500 8f50c0ffdaa6544ca1e5c44499ff8aaf 207 SUPERFAMILY SSF56214 102 186 3.84E-13 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS10500 8f50c0ffdaa6544ca1e5c44499ff8aaf 207 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 103 165 6.4E-6 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS10500 8f50c0ffdaa6544ca1e5c44499ff8aaf 207 Gene3D G3DSA:3.90.470.20 1 111 2.4E-11 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS10500 8f50c0ffdaa6544ca1e5c44499ff8aaf 207 Gene3D G3DSA:3.90.470.20 112 194 7.2E-6 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS10500 8f50c0ffdaa6544ca1e5c44499ff8aaf 207 SUPERFAMILY SSF56214 30 95 1.67E-9 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS05040 1303b598aa4659271e66260d00141453 275 Gene3D G3DSA:3.30.70.260 14 90 3.5E-5 T 29-03-2018 CFE88_RS05040 1303b598aa4659271e66260d00141453 275 SUPERFAMILY SSF55021 9 73 6.87E-6 T 29-03-2018 CFE88_RS05040 1303b598aa4659271e66260d00141453 275 PIRSF PIRSF021288 4 275 8.3E-146 T 29-03-2018 IPR016784 Uncharacterised protein UCP021288 with ACT domain CFE88_RS05040 1303b598aa4659271e66260d00141453 275 Pfam PF11868 Protein of unknown function (DUF3388) 75 261 1.0E-96 T 29-03-2018 IPR024514 Domain of unknown function DUF3388 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Pfam PF02817 e3 binding domain 131 166 4.7E-12 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Gene3D G3DSA:4.10.320.10 122 182 8.9E-15 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 SUPERFAMILY SSF47005 126 169 1.2E-9 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 202 425 4.6E-72 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Pfam PF00364 Biotin-requiring enzyme 4 76 5.6E-17 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Gene3D G3DSA:3.30.559.10 183 425 1.2E-66 T 29-03-2018 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 SUPERFAMILY SSF52777 200 425 5.34E-65 T 29-03-2018 CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 SUPERFAMILY SSF51230 3 91 5.5E-24 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS10560 356248dcd599497b4aefcde206a047a2 425 Gene3D G3DSA:2.40.50.100 5 79 4.9E-17 T 29-03-2018 CFE88_RS01050 7278dc4a494067b3400f5a924293bf36 312 Gene3D G3DSA:2.60.120.10 1 220 1.4E-53 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS01050 7278dc4a494067b3400f5a924293bf36 312 Gene3D G3DSA:2.60.120.10 232 312 2.0E-12 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS01050 7278dc4a494067b3400f5a924293bf36 312 SUPERFAMILY SSF51182 2 312 2.91E-96 T 29-03-2018 IPR011051 RmlC-like cupin domain CFE88_RS01050 7278dc4a494067b3400f5a924293bf36 312 Pfam PF01238 Phosphomannose isomerase type I 4 193 2.2E-21 T 29-03-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 CFE88_RS01050 7278dc4a494067b3400f5a924293bf36 312 PIRSF PIRSF036894 1 312 1.1E-123 T 29-03-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 CFE88_RS09150 a176287734f360b6dbdc1fa31c7b6602 342 Pfam PF13303 Phosphotransferase system, EIIC 28 335 1.3E-61 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS00470 30fa6e6fd398e80bab7f345958ac9ba0 251 SUPERFAMILY SSF55729 117 244 4.15E-14 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00470 30fa6e6fd398e80bab7f345958ac9ba0 251 Gene3D G3DSA:3.40.630.30 116 250 2.4E-13 T 29-03-2018 CFE88_RS00470 30fa6e6fd398e80bab7f345958ac9ba0 251 Pfam PF13673 Acetyltransferase (GNAT) domain 147 238 5.0E-8 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS04650 e150785266fd26246b7a58373935d11a 341 Pfam PF01212 Beta-eliminating lyase 30 278 6.3E-28 T 29-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 CFE88_RS04650 e150785266fd26246b7a58373935d11a 341 Gene3D G3DSA:3.40.640.10 1 254 4.3E-31 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS04650 e150785266fd26246b7a58373935d11a 341 Gene3D G3DSA:3.90.1150.10 255 341 1.0E-16 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS04650 e150785266fd26246b7a58373935d11a 341 SUPERFAMILY SSF53383 2 341 3.44E-77 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08850 513379691163527ea09096f512e96767 1169 Gene3D G3DSA:3.40.50.300 805 972 2.9E-23 T 29-03-2018 CFE88_RS08850 513379691163527ea09096f512e96767 1169 Pfam PF00271 Helicase conserved C-terminal domain 819 925 1.0E-15 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS08850 513379691163527ea09096f512e96767 1169 Pfam PF02559 CarD-like/TRCF domain 496 591 3.5E-31 T 29-03-2018 IPR003711 CarD-like/TRCF domain CFE88_RS08850 513379691163527ea09096f512e96767 1169 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 156 1094 0.0 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CFE88_RS08850 513379691163527ea09096f512e96767 1169 Pfam PF03461 TRCF domain 1022 1114 2.1E-26 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF52540 374 482 4.18E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08850 513379691163527ea09096f512e96767 1169 Gene3D G3DSA:3.40.50.300 443 793 3.5E-38 T 29-03-2018 CFE88_RS08850 513379691163527ea09096f512e96767 1169 SMART SM00487 616 806 2.2E-35 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF143517 1010 1159 9.81E-32 T 29-03-2018 CFE88_RS08850 513379691163527ea09096f512e96767 1169 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 37 1125 29.22 T 29-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CFE88_RS08850 513379691163527ea09096f512e96767 1169 Pfam PF00270 DEAD/DEAH box helicase 621 780 1.6E-17 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF52540 798 1004 3.33E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08850 513379691163527ea09096f512e96767 1169 Gene3D G3DSA:3.40.50.300 9 323 0.012 T 29-03-2018 CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF52540 24 366 8.85E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08850 513379691163527ea09096f512e96767 1169 SMART SM01058 495 592 2.7E-47 T 29-03-2018 IPR003711 CarD-like/TRCF domain CFE88_RS08850 513379691163527ea09096f512e96767 1169 SMART SM00982 1021 1121 1.1E-37 T 29-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CFE88_RS08850 513379691163527ea09096f512e96767 1169 SMART SM00490 839 926 6.4E-18 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF141259 487 564 1.57E-24 T 29-03-2018 IPR003711 CarD-like/TRCF domain CFE88_RS08850 513379691163527ea09096f512e96767 1169 SUPERFAMILY SSF52540 540 799 1.84E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10630 c910308e448d405edc30e378b96d6c9d 270 Gene3D G3DSA:3.30.930.10 137 269 2.5E-4 T 29-03-2018 CFE88_RS10630 c910308e448d405edc30e378b96d6c9d 270 Gene3D G3DSA:3.30.930.10 12 103 0.0015 T 29-03-2018 CFE88_RS10630 c910308e448d405edc30e378b96d6c9d 270 Pfam PF13393 Histidyl-tRNA synthetase 11 265 1.0E-13 T 29-03-2018 CFE88_RS10630 c910308e448d405edc30e378b96d6c9d 270 SUPERFAMILY SSF55681 15 261 1.82E-15 T 29-03-2018 CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 4.3E-67 T 29-03-2018 IPR023798 Ribosomal protein S7 domain CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 2.3E-69 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 Gene3D G3DSA:1.10.455.10 6 156 2.0E-59 T 29-03-2018 IPR023798 Ribosomal protein S7 domain CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 29-03-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.156 T 29-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 SUPERFAMILY SSF47973 4 149 7.59E-61 T 29-03-2018 IPR023798 Ribosomal protein S7 domain CFE88_RS08540 e9c48b4e74c7043d4248a5c0a9d8fcbf 156 PIRSF PIRSF002122 3 156 2.1E-58 T 29-03-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 Pfam PF13481 AAA domain 73 218 1.5E-15 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 79 107 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 170 194 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 318 341 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 209 237 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 244 270 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 120 137 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 PRINTS PR01874 DNA repair protein radA signature 10 34 2.1E-93 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 SMART SM00382 87 240 1.4E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 Gene3D G3DSA:3.30.230.10 258 457 1.6E-35 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 448 2.0E-198 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 SUPERFAMILY SSF54211 299 452 1.86E-39 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 SUPERFAMILY SSF54211 251 265 1.86E-39 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 Pfam PF13541 Subunit ChlI of Mg-chelatase 349 426 4.6E-7 T 29-03-2018 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 Hamap MF_01498 DNA repair protein RadA [radA]. 21 452 43.584 T 29-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 SUPERFAMILY SSF52540 65 290 1.0E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08650 55e1cc1f5f93d0825d8d906035ebfd96 457 Gene3D G3DSA:3.40.50.300 53 257 5.2E-25 T 29-03-2018 CFE88_RS01240 b9e0833e17f90f86b770b43cf872fbcd 171 Gene3D G3DSA:1.20.5.620 93 150 7.9E-7 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain CFE88_RS01240 b9e0833e17f90f86b770b43cf872fbcd 171 SUPERFAMILY SSF81573 75 132 2.88E-7 T 29-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain CFE88_RS01240 b9e0833e17f90f86b770b43cf872fbcd 171 Hamap MF_01398 ATP synthase subunit b [atpF]. 13 150 13.392 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CFE88_RS01240 b9e0833e17f90f86b770b43cf872fbcd 171 Pfam PF00430 ATP synthase B/B' CF(0) 20 148 1.1E-33 T 29-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CFE88_RS01240 b9e0833e17f90f86b770b43cf872fbcd 171 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 23 167 1.6E-37 T 29-03-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Gene3D G3DSA:3.40.50.300 214 390 2.6E-27 T 29-03-2018 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Pfam PF13091 PLD-like domain 45 175 2.3E-15 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Pfam PF04851 Type III restriction enzyme, res subunit 222 373 1.8E-35 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Pfam PF00271 Helicase conserved C-terminal domain 453 544 2.0E-13 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 SMART SM00487 219 408 2.6E-16 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Pfam PF11907 Domain of unknown function (DUF3427) 685 952 9.6E-77 T 29-03-2018 IPR021835 Protein of unknown function DUF3427 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 SMART SM00490 465 546 1.5E-13 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 SUPERFAMILY SSF56024 31 181 1.91E-13 T 29-03-2018 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Gene3D G3DSA:3.30.870.10 27 213 8.5E-17 T 29-03-2018 CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 SUPERFAMILY SSF52540 271 567 5.22E-46 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11885 8fc5047fc38208016d798970140feec9 952 Gene3D G3DSA:3.40.50.300 422 748 1.4E-24 T 29-03-2018 CFE88_RS09305 9fe17d9dc8d8aeaaa316d7c0b3d4ec22 422 Pfam PF00860 Permease family 2 378 1.1E-107 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS09305 9fe17d9dc8d8aeaaa316d7c0b3d4ec22 422 TIGRFAM TIGR03173 pbuX: xanthine permease 7 410 6.7E-154 T 29-03-2018 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 CFE88_RS09305 9fe17d9dc8d8aeaaa316d7c0b3d4ec22 422 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 325 345 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CFE88_RS09305 9fe17d9dc8d8aeaaa316d7c0b3d4ec22 422 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 2 407 7.5E-126 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CFE88_RS05455 2857a76c0a3d1efdbf25d1e689128a98 175 SUPERFAMILY SSF53271 4 170 1.84E-36 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS05455 2857a76c0a3d1efdbf25d1e689128a98 175 Gene3D G3DSA:3.40.50.2020 1 175 9.4E-31 T 29-03-2018 CFE88_RS05455 2857a76c0a3d1efdbf25d1e689128a98 175 Pfam PF00156 Phosphoribosyl transferase domain 5 147 3.8E-18 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS05455 2857a76c0a3d1efdbf25d1e689128a98 175 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 3 175 33.653 T 29-03-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CFE88_RS10285 cc10dcf14c9819d4d2fc2fbcf5bfcc46 388 Gene3D G3DSA:3.40.1710.10 38 212 7.3E-12 T 29-03-2018 CFE88_RS10285 cc10dcf14c9819d4d2fc2fbcf5bfcc46 388 Pfam PF12698 ABC-2 family transporter protein 17 383 5.9E-20 T 29-03-2018 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 Gene3D G3DSA:1.10.560.10 372 513 1.4E-26 T 29-03-2018 IPR027413 GroEL-like equatorial domain CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 Gene3D G3DSA:1.10.560.10 1 185 9.6E-43 T 29-03-2018 IPR027413 GroEL-like equatorial domain CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 SUPERFAMILY SSF54849 137 202 4.35E-27 T 29-03-2018 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 Gene3D G3DSA:3.50.7.10 186 371 3.8E-94 T 29-03-2018 IPR027409 GroEL-like apical domain CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 PRINTS PR00298 60kDa chaperonin signature 26 52 6.4E-73 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 PRINTS PR00298 60kDa chaperonin signature 396 417 6.4E-73 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 PRINTS PR00298 60kDa chaperonin signature 82 109 6.4E-73 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 PRINTS PR00298 60kDa chaperonin signature 348 373 6.4E-73 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 PRINTS PR00298 60kDa chaperonin signature 266 289 6.4E-73 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 Hamap MF_00600 60 kDa chaperonin [groL]. 1 538 40.686 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 SUPERFAMILY SSF52029 182 374 1.09E-81 T 29-03-2018 IPR027409 GroEL-like apical domain CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 SUPERFAMILY SSF48592 6 133 7.91E-77 T 29-03-2018 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 SUPERFAMILY SSF48592 404 518 7.91E-77 T 29-03-2018 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 523 3.5E-248 T 29-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 29-03-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CFE88_RS01630 f6e14666b99038f5da6a6610b2bb9d49 539 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 520 2.7E-101 T 29-03-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 6.5E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 SUPERFAMILY SSF51735 8 260 4.57E-82 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 259 2.0E-62 T 29-03-2018 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 189 0.0094 T 29-03-2018 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 TIGRFAM TIGR02415 23BDH: acetoin reductases 9 261 8.5E-115 T 29-03-2018 IPR014007 Acetoin reductase GO:0019152|GO:0045150|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00650+1.1.1.304+1.1.1.30|MetaCyc: PWY-6389 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 Gene3D G3DSA:3.40.50.720 2 45 1.7E-8 T 29-03-2018 CFE88_RS10835 b82d3eecb86b53de1c0809f5a1ec2d76 262 Gene3D G3DSA:3.40.50.720 46 262 1.5E-63 T 29-03-2018 CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Hamap MF_01114 Regulatory protein RecX [recX]. 42 208 14.953 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Gene3D G3DSA:1.10.10.10 108 148 4.3E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Gene3D G3DSA:1.10.10.10 212 262 5.0E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Gene3D G3DSA:1.10.10.10 149 205 3.8E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Gene3D G3DSA:1.10.10.10 44 107 2.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01965 e2730795e6fe6d2efa4c33c5ad2e2078 267 Pfam PF02631 RecX family 84 203 1.3E-22 T 29-03-2018 IPR003783 Regulatory protein RecX GO:0006282 CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 Pfam PF13514 AAA domain 1 204 5.6E-22 T 29-03-2018 CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 Gene3D G3DSA:3.40.50.300 1 304 5.3E-11 T 29-03-2018 CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 Gene3D G3DSA:3.40.50.300 708 978 7.0E-11 T 29-03-2018 CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 SUPERFAMILY SSF52540 787 961 1.63E-8 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 SUPERFAMILY SSF52540 1 51 1.63E-8 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02270 09de7f854615755949a81e56eb4198a0 979 SUPERFAMILY SSF52540 1 242 6.64E-7 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 SMART SM00418 21 98 2.9E-20 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 Pfam PF01022 Bacterial regulatory protein, arsR family 28 75 2.9E-12 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 Gene3D G3DSA:1.10.10.10 1 100 7.4E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 56 2.0E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 2.0E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 2.0E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 73 88 2.0E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS10010 cbe6405a55a81b0cf1f54bad01ba6106 106 SUPERFAMILY SSF46785 7 98 2.38E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06815 a73c7c609f9620b8f76c51bf2d9b6793 402 SUPERFAMILY SSF51905 6 211 5.92E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06815 a73c7c609f9620b8f76c51bf2d9b6793 402 SUPERFAMILY SSF51905 152 339 1.84E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06815 a73c7c609f9620b8f76c51bf2d9b6793 402 Gene3D G3DSA:3.50.50.60 6 129 1.1E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06815 a73c7c609f9620b8f76c51bf2d9b6793 402 Gene3D G3DSA:3.50.50.60 130 335 3.0E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06815 a73c7c609f9620b8f76c51bf2d9b6793 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 326 9.3E-39 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 ProSitePatterns PS00398 Site-specific recombinases signature 2. 56 68 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 Gene3D G3DSA:1.20.5.40 115 143 5.8E-9 T 29-03-2018 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 Gene3D G3DSA:1.10.10.60 146 201 4.4E-15 T 29-03-2018 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 Pfam PF00239 Resolvase, N terminal domain 2 145 2.4E-33 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 Gene3D G3DSA:3.40.50.1390 1 114 3.2E-30 T 29-03-2018 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 Pfam PF02796 Helix-turn-helix domain of resolvase 147 198 2.2E-19 T 29-03-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 SUPERFAMILY SSF53041 1 145 3.01E-36 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12585 1b5f87f7ad52be3993e5fca576732d28 202 SMART SM00857 2 145 2.6E-43 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Gene3D G3DSA:1.10.150.110 1 82 3.5E-17 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Pfam PF02811 PHP domain 335 491 2.2E-8 T 29-03-2018 IPR004013 PHP domain GO:0003824 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 PRINTS PR00869 DNA-polymerase family X signature 295 313 2.3E-5 T 29-03-2018 IPR022312 DNA polymerase family X GO:0003677|GO:0034061 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 PRINTS PR00869 DNA-polymerase family X signature 179 193 2.3E-5 T 29-03-2018 IPR022312 DNA polymerase family X GO:0003677|GO:0034061 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 PRINTS PR00869 DNA-polymerase family X signature 193 201 2.3E-5 T 29-03-2018 IPR022312 DNA polymerase family X GO:0003677|GO:0034061 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 PIRSF PIRSF005047 1 566 2.9E-225 T 29-03-2018 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SMART SM00483 1 314 6.1E-46 T 29-03-2018 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SUPERFAMILY SSF81301 152 314 4.71E-42 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Pfam PF14791 DNA polymerase beta thumb 254 314 9.3E-16 T 29-03-2018 IPR029398 DNA polymerase beta, thumb domain CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Gene3D G3DSA:3.30.460.10 152 245 1.9E-20 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Pfam PF14520 Helix-hairpin-helix domain 90 144 3.9E-5 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Pfam PF14716 Helix-hairpin-helix domain 4 67 9.6E-18 T 29-03-2018 IPR010996 DNA polymerase beta-like, N-terminal domain CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Gene3D G3DSA:3.30.210.10 260 324 1.8E-15 T 29-03-2018 IPR029398 DNA polymerase beta, thumb domain CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Gene3D G3DSA:1.10.150.20 86 146 7.9E-11 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SUPERFAMILY SSF89550 333 565 2.75E-50 T 29-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SMART SM00278 123 142 220.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SMART SM00278 88 107 150.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SMART SM00278 48 67 290.0 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 Gene3D G3DSA:3.20.20.140 335 566 9.7E-45 T 29-03-2018 CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SMART SM00481 334 413 1.2E-13 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05650 804ba22742580e821fef9246b34b9316 569 SUPERFAMILY SSF47802 2 81 1.96E-18 T 29-03-2018 IPR010996 DNA polymerase beta-like, N-terminal domain CFE88_RS04625 b6c45a78bf8f78a9693e8f88d8f13602 364 SMART SM00387 275 362 0.0051 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04625 b6c45a78bf8f78a9693e8f88d8f13602 364 SUPERFAMILY SSF55874 272 361 9.17E-12 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04625 b6c45a78bf8f78a9693e8f88d8f13602 364 Pfam PF07730 Histidine kinase 176 239 2.8E-17 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CFE88_RS04625 b6c45a78bf8f78a9693e8f88d8f13602 364 Gene3D G3DSA:3.30.565.10 241 361 6.0E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 TIGRFAM TIGR00059 L17: ribosomal protein bL17 2 122 1.1E-43 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 SUPERFAMILY SSF64263 2 122 1.1E-41 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 Pfam PF01196 Ribosomal protein L17 16 122 1.7E-37 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 ProSitePatterns PS01167 Ribosomal protein L17 signature. 30 52 - T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 Gene3D G3DSA:3.90.1030.10 1 122 6.4E-46 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00750 e7a14a36dae6a52cf18edfe367d782fb 122 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 1 122 27.135 T 29-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09740 118bd0e2c92d474ee1ba47fa5bcdbb7e 334 TIGRFAM TIGR03395 sphingomy: sphingomyelin phosphodiesterase 44 330 9.1E-119 T 29-03-2018 IPR017766 Sphingomyelinase C/phospholipase C GO:0005576|GO:0008081 CFE88_RS09740 118bd0e2c92d474ee1ba47fa5bcdbb7e 334 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 69 324 1.2E-16 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase CFE88_RS09740 118bd0e2c92d474ee1ba47fa5bcdbb7e 334 Gene3D G3DSA:3.60.10.10 32 328 1.3E-32 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase CFE88_RS09740 118bd0e2c92d474ee1ba47fa5bcdbb7e 334 SUPERFAMILY SSF56219 43 328 6.94E-80 T 29-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase CFE88_RS09285 5de44105a95a4a1a3f8290bcad0413e0 215 SUPERFAMILY SSF56349 9 208 4.12E-37 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CFE88_RS09285 5de44105a95a4a1a3f8290bcad0413e0 215 Gene3D G3DSA:1.10.443.10 3 208 3.5E-38 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS09285 5de44105a95a4a1a3f8290bcad0413e0 215 Pfam PF00589 Phage integrase family 10 200 6.0E-26 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 472 1.5E-186 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Gene3D G3DSA:2.40.33.10 84 156 1.7E-28 T 29-03-2018 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 1.2E-153 T 29-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Gene3D G3DSA:3.50.30.10 471 579 7.0E-22 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Gene3D G3DSA:3.20.20.60 1 83 1.3E-22 T 29-03-2018 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Gene3D G3DSA:3.20.20.60 157 320 2.1E-65 T 29-03-2018 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 SUPERFAMILY SSF51621 1 74 3.49E-102 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 SUPERFAMILY SSF51621 156 342 3.49E-102 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Pfam PF00391 PEP-utilising enzyme, mobile domain 507 575 4.8E-14 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 SUPERFAMILY SSF52935 322 473 2.62E-42 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 470 1.5E-36 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 312 328 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 243 267 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 268 292 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 59 75 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 293 311 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 216 242 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 PRINTS PR01050 Pyruvate kinase family signature 186 200 9.7E-76 T 29-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 SUPERFAMILY SSF52009 465 583 6.41E-22 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 SUPERFAMILY SSF50800 70 167 2.09E-26 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain CFE88_RS02830 2fa408cf9fe8e7f60ba5522dc26fa3be 585 Gene3D G3DSA:3.40.1380.20 321 470 4.9E-54 T 29-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 29-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 ProSitePatterns PS00501 Signal peptidases I serine active site. 34 41 - T 29-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 8 179 5.8E-52 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 Pfam PF00717 Peptidase S24-like 31 99 7.7E-17 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 75 87 4.3E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 25 41 4.3E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 4.3E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 ProSitePatterns PS00760 Signal peptidases I lysine active site. 77 89 - T 29-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 SUPERFAMILY SSF51306 25 184 8.89E-48 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS09590 0a8161a05816c470aa2a82b798b233fa 192 Gene3D G3DSA:2.10.109.10 21 192 4.2E-42 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 SUPERFAMILY SSF52833 104 191 1.74E-18 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Gene3D G3DSA:3.40.30.10 1 92 4.8E-26 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 365 2.7E-37 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 305 323 2.7E-37 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 431 447 2.7E-37 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 457 479 2.7E-37 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 208 227 2.7E-37 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PIRSF PIRSF000238 1 507 2.1E-240 T 29-03-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Pfam PF13192 Thioredoxin domain 123 187 5.8E-6 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Gene3D G3DSA:3.50.50.60 326 433 3.6E-23 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Gene3D G3DSA:3.50.50.60 434 507 2.0E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 335 355 - T 29-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 SUPERFAMILY SSF51905 198 503 1.86E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Gene3D G3DSA:3.50.50.60 193 325 2.7E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 207 229 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 395 411 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 467 485 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 343 367 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 433 454 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 328 340 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 254 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 306 314 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 259 269 1.4E-60 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Gene3D G3DSA:3.40.30.10 101 192 0.0015 T 29-03-2018 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 SUPERFAMILY SSF52833 1 99 6.37E-30 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 206 482 8.2E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09355 203663a01e79e223dc0c92960b8c4f2c 507 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 507 1.5E-237 T 29-03-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 CFE88_RS01125 4253df05018a296cdc52cb2496699ecb 265 PIRSF PIRSF036940 1 265 4.5E-138 T 29-03-2018 IPR011602 Type II pantothenate kinase, bacterial GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CFE88_RS01125 4253df05018a296cdc52cb2496699ecb 265 SUPERFAMILY SSF53067 1 265 1.73E-59 T 29-03-2018 CFE88_RS01125 4253df05018a296cdc52cb2496699ecb 265 Pfam PF03630 Fumble 83 263 1.5E-23 T 29-03-2018 IPR004567 Type II pantothenate kinase GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|Reactome: R-HSA-196783 CFE88_RS01125 4253df05018a296cdc52cb2496699ecb 265 Hamap MF_01273 Type II pantothenate kinase [coaW]. 1 265 49.052 T 29-03-2018 IPR011602 Type II pantothenate kinase, bacterial GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CFE88_RS01125 4253df05018a296cdc52cb2496699ecb 265 TIGRFAM TIGR00555 panK_eukar: pantothenate kinase 1 264 7.5E-93 T 29-03-2018 IPR004567 Type II pantothenate kinase GO:0004594|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|Reactome: R-HSA-196783 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 284 1.3E-102 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 PIRSF PIRSF001359 1 285 1.2E-127 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 6.5E-115 T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 285 8.0E-129 T 29-03-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 29-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 Gene3D G3DSA:3.20.20.70 1 286 4.6E-106 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS01150 2eeef3a0a09a9c0420c4a4973004ced6 286 SUPERFAMILY SSF51569 1 285 4.54E-105 T 29-03-2018 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 SMART SM00941 345 418 4.3E-29 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 417 2.0E-181 T 29-03-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 8.3E-23 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 SUPERFAMILY SSF54680 332 431 2.09E-26 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 SUPERFAMILY SSF52418 69 329 1.44E-92 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Gene3D G3DSA:1.20.970.10 1 66 1.6E-26 T 29-03-2018 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 4.3E-48 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 29-03-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Gene3D G3DSA:3.40.1030.10 68 337 1.0E-93 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 PIRSF PIRSF000478 1 432 2.0E-168 T 29-03-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Gene3D G3DSA:3.90.1170.30 338 423 8.1E-28 T 29-03-2018 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 417 2.3E-26 T 29-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01090 05076f01c6f86c4db7039032293f921f 433 SUPERFAMILY SSF47648 1 69 1.57E-22 T 29-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS10175 28a903db90918938788b867a7f40b121 446 TIGRFAM TIGR02919 TIGR02919: accessory Sec system glycosyltransferase GtfB 1 438 1.2E-171 T 29-03-2018 IPR014268 Glycosyltransferase-stabilising protein Gtf2 GO:0031647 CFE88_RS10175 28a903db90918938788b867a7f40b121 446 Gene3D G3DSA:3.40.50.2000 272 417 8.0E-4 T 29-03-2018 CFE88_RS10175 28a903db90918938788b867a7f40b121 446 Hamap MF_01473 Glycosyltransferase stabilizing protein Gtf2 [gtf2]. 1 441 33.687 T 29-03-2018 IPR014268 Glycosyltransferase-stabilising protein Gtf2 GO:0031647 CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 Pfam PF04055 Radical SAM superfamily 36 184 2.3E-10 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 SUPERFAMILY SSF102114 32 326 5.1E-24 T 29-03-2018 CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 Pfam PF13353 4Fe-4S single cluster domain 41 110 1.6E-5 T 29-03-2018 CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 TIGRFAM TIGR04478 rSAM_YfkAB: radical SAM/CxCxxxxC motif protein YfkAB 8 370 2.7E-186 T 29-03-2018 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 Pfam PF08756 YfkB-like domain 220 370 5.0E-78 T 29-03-2018 IPR014866 YfkB-like domain CFE88_RS01945 8c1d726f59baded5043e6c4c7515a8e0 380 Gene3D G3DSA:3.20.20.70 20 375 7.9E-27 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 Pfam PF07972 NrdI Flavodoxin like 3 114 1.8E-34 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 SUPERFAMILY SSF52218 2 121 5.86E-21 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 TIGRFAM TIGR00333 nrdI: nrdI protein 3 120 3.1E-33 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 Gene3D G3DSA:3.40.50.360 1 123 6.4E-16 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 Hamap MF_00128 Protein NrdI [nrdI]. 1 124 26.848 T 29-03-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial CFE88_RS07540 c99c6b5494db242566b3b9c862765cb0 132 PIRSF PIRSF005087 1 128 2.6E-40 T 29-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 SUPERFAMILY SSF51735 1 159 7.76E-28 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 98 3.4E-16 T 29-03-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 161 265 2.2E-26 T 29-03-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 SUPERFAMILY SSF48179 160 267 1.45E-26 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 Gene3D G3DSA:1.10.3730.10 164 270 1.1E-27 T 29-03-2018 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 Gene3D G3DSA:3.40.50.720 1 163 1.4E-22 T 29-03-2018 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 1 265 21.806 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 PIRSF PIRSF000193 1 268 4.3E-92 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CFE88_RS03750 3c48be4586bfcb314d6deac9bddcc6ed 271 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 3 265 3.6E-83 T 29-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Gene3D G3DSA:3.90.320.10 990 1215 3.4E-37 T 29-03-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Hamap MF_01451 ATP-dependent helicase/nuclease subunit A [addA]. 8 1218 17.825 T 29-03-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Pfam PF13361 UvrD-like helicase C-terminal domain 465 867 5.1E-32 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 SUPERFAMILY SSF52980 996 1212 4.29E-37 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1039 1208 2.8E-8 T 29-03-2018 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 454 2.5E-76 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Gene3D G3DSA:3.40.50.300 468 604 1.9E-21 T 29-03-2018 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 SUPERFAMILY SSF52540 11 182 3.06E-110 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 SUPERFAMILY SSF52540 847 873 3.06E-110 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 SUPERFAMILY SSF52540 339 805 3.06E-110 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 11 1216 0.0 T 29-03-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Gene3D G3DSA:1.10.486.10 605 765 9.0E-25 T 29-03-2018 CFE88_RS06680 63108a8d27a76941eeac89c0b520cdd5 1218 Gene3D G3DSA:3.40.50.300 4 467 4.5E-50 T 29-03-2018 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 TIGRFAM TIGR00526 folB_dom: FolB domain 3 120 1.0E-34 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 SUPERFAMILY SSF55620 1 120 3.34E-43 T 29-03-2018 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 5 118 2.9E-39 T 29-03-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 SMART SM00905 5 118 7.9E-49 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 Gene3D G3DSA:3.30.1130.10 2 120 3.9E-33 T 29-03-2018 CFE88_RS08790 cf89ae1ee9b8189426ddd2923c042e4c 121 Pfam PF02152 Dihydroneopterin aldolase 5 116 1.8E-33 T 29-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CFE88_RS09145 453336b57ee83d7accdc025800238905 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 118 5.1E-6 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS09145 453336b57ee83d7accdc025800238905 127 SUPERFAMILY SSF54593 3 122 8.74E-20 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS09145 453336b57ee83d7accdc025800238905 127 Gene3D G3DSA:3.10.180.10 1 125 3.9E-16 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS00005 4e8d7b240d6b4cd571b30718841706e5 179 Pfam PF07987 Domain of unkown function (DUF1775) 25 150 4.2E-17 T 29-03-2018 IPR012533 YcnI-like CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF04563 RNA polymerase beta subunit 28 453 8.5E-30 T 29-03-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 SUPERFAMILY SSF64484 377 1154 0.0 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 SUPERFAMILY SSF64484 14 289 0.0 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF00562 RNA polymerase Rpb2, domain 6 675 1069 3.0E-165 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1147 12.541 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF04565 RNA polymerase Rpb2, domain 3 468 536 5.3E-30 T 29-03-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:2.40.270.10 847 1055 2.5E-77 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 204 895 0.0 T 29-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:2.40.50.100 672 750 1.1E-22 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF04561 RNA polymerase Rpb2, domain 2 140 289 4.1E-28 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF04561 RNA polymerase Rpb2, domain 2 373 409 7.7E-5 T 29-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:3.90.1100.10 278 602 3.7E-82 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:3.90.1100.10 603 670 2.2E-13 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:3.90.1100.10 20 237 4.5E-58 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF04560 RNA polymerase Rpb2, domain 7 1071 1146 1.4E-25 T 29-03-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 ProSitePatterns PS01166 RNA polymerases beta chain signature. 922 934 - T 29-03-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:2.40.270.10 751 846 2.9E-11 T 29-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Gene3D G3DSA:3.90.1800.10 1072 1139 3.7E-12 T 29-03-2018 CFE88_RS08560 ef4f7b7d118a3db571fdd759dfaafab1 1183 Pfam PF10385 RNA polymerase beta subunit external 1 domain 546 613 2.3E-25 T 29-03-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 582 2.1E-28 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SUPERFAMILY SSF47384 344 425 1.49E-18 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Pfam PF00512 His Kinase A (phospho-acceptor) domain 358 424 1.4E-16 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SMART SM00388 358 425 4.3E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 522 5.8E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 580 5.8E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 536 5.8E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 561 5.8E-18 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SUPERFAMILY SSF158472 197 247 3.01E-10 T 29-03-2018 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SMART SM00304 196 248 5.9E-13 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SUPERFAMILY SSF55874 414 581 2.88E-46 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Gene3D G3DSA:3.30.565.10 439 586 7.2E-45 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Pfam PF00672 HAMP domain 197 239 5.5E-12 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Gene3D G3DSA:3.30.450.20 98 363 6.1E-7 T 29-03-2018 CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 SMART SM00387 471 583 6.0E-39 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03805 0160d77e59b080f412c04108ce343117 586 Gene3D G3DSA:1.10.287.130 364 421 1.4E-16 T 29-03-2018 CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 Pfam PF02527 rRNA small subunit methyltransferase G 21 200 1.4E-56 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 SUPERFAMILY SSF53335 2 236 1.09E-48 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 Gene3D G3DSA:3.40.50.150 3 237 4.1E-42 T 29-03-2018 CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 213 28.741 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 214 2.1E-52 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CFE88_RS09675 1908a5f1acc262a2b22a4f0ff91fa06e 239 PIRSF PIRSF003078 1 219 1.0E-56 T 29-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 346 2.1E-138 T 29-03-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 Gene3D G3DSA:1.20.272.10 243 353 5.2E-10 T 29-03-2018 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 SUPERFAMILY SSF52540 33 222 2.5E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 6.5E-6 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 6.5E-6 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 SMART SM00382 37 179 1.9E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 Gene3D G3DSA:3.40.50.300 1 166 5.2E-42 T 29-03-2018 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 SUPERFAMILY SSF48019 244 351 1.68E-10 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 Gene3D G3DSA:1.10.8.60 167 242 8.8E-19 T 29-03-2018 CFE88_RS08995 430467faa847ec2ef880dd5af60ac885 568 Pfam PF13177 DNA polymerase III, delta subunit 20 178 7.5E-48 T 29-03-2018 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 SMART SM00357 3 66 8.6E-31 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 29-03-2018 IPR019844 Cold-shock conserved site CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 SUPERFAMILY SSF50249 1 65 5.61E-25 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.1E-30 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 PRINTS PR00050 Cold shock protein signature 4 19 4.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 PRINTS PR00050 Cold shock protein signature 39 57 4.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 PRINTS PR00050 Cold shock protein signature 24 33 4.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 Gene3D G3DSA:2.40.50.140 1 66 9.3E-28 T 29-03-2018 CFE88_RS04220 a68d0fa686359db7b21ece78fa872c9f 66 PIRSF PIRSF002599 1 66 8.7E-26 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 CFE88_RS06575 b83d5aae20b74c7adac627559cf5710c 602 Pfam PF01432 Peptidase family M3 207 587 4.4E-75 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CFE88_RS06575 b83d5aae20b74c7adac627559cf5710c 602 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 15 598 1.5E-205 T 29-03-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 CFE88_RS06575 b83d5aae20b74c7adac627559cf5710c 602 Gene3D G3DSA:1.10.1370.10 80 599 7.1E-43 T 29-03-2018 CFE88_RS06575 b83d5aae20b74c7adac627559cf5710c 602 SUPERFAMILY SSF55486 11 585 1.56E-123 T 29-03-2018 CFE88_RS06575 b83d5aae20b74c7adac627559cf5710c 602 Pfam PF08439 Oligopeptidase F 117 186 3.9E-21 T 29-03-2018 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS03885 f3a45f72885b5af179c8a99a62d17c2a 339 SUPERFAMILY SSF48576 26 338 3.24E-80 T 29-03-2018 IPR008949 Isoprenoid synthase domain CFE88_RS03885 f3a45f72885b5af179c8a99a62d17c2a 339 Pfam PF00348 Polyprenyl synthetase 46 273 6.9E-65 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 CFE88_RS03885 f3a45f72885b5af179c8a99a62d17c2a 339 Gene3D G3DSA:1.10.600.10 9 339 1.2E-84 T 29-03-2018 IPR008949 Isoprenoid synthase domain CFE88_RS03885 f3a45f72885b5af179c8a99a62d17c2a 339 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 99 113 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS03885 f3a45f72885b5af179c8a99a62d17c2a 339 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 221 233 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 79 17.964 T 29-03-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 Gene3D G3DSA:3.30.1280.10 1 80 8.9E-22 T 29-03-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 10 79 8.0E-35 T 29-03-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 4 79 2.3E-21 T 29-03-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 4 79 4.5E-24 T 29-03-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06015 0365078abab6f05aaeaf687d089266d0 86 SUPERFAMILY SSF82697 2 80 1.6E-21 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 Gene3D G3DSA:3.50.50.60 2 445 8.2E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PIRSF PIRSF000171 1 240 2.7E-19 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PIRSF PIRSF000171 341 576 3.8E-17 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 Gene3D G3DSA:4.10.80.40 548 579 1.3E-6 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 Gene3D G3DSA:1.20.58.100 446 547 1.0E-25 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 SUPERFAMILY SSF46977 444 579 1.18E-45 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 SUPERFAMILY SSF56425 231 353 2.39E-31 T 29-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 SUPERFAMILY SSF51905 357 426 2.1E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 SUPERFAMILY SSF51905 3 247 2.1E-62 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 6 579 3.8E-289 T 29-03-2018 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 5.3E-6 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.3E-6 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 452 579 3.4E-43 T 29-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.1E-8 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 378 6.1E-8 T 29-03-2018 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 39 48 - T 29-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05620 f00e57265971bf0a77e7f4adbce7383b 588 Pfam PF00890 FAD binding domain 6 392 2.7E-83 T 29-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 Pfam PF03449 Transcription elongation factor, N-terminal 8 76 5.4E-33 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 122 138 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 SUPERFAMILY SSF46557 5 79 4.71E-28 T 29-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 158 32.503 T 29-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 SUPERFAMILY SSF54534 83 157 2.88E-19 T 29-03-2018 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 Gene3D G3DSA:3.10.50.30 78 158 1.9E-23 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 Gene3D G3DSA:1.10.287.180 6 77 2.8E-33 T 29-03-2018 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 51 - T 29-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 158 2.2E-24 T 29-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 158 1.6E-55 T 29-03-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CFE88_RS03220 f3f4794e113a72bd7db3b45754844dba 158 PIRSF PIRSF006092 1 158 1.5E-51 T 29-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 SUPERFAMILY SSF47323 620 804 2.8E-40 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Gene3D G3DSA:3.40.50.620 2 231 8.2E-80 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 804 23.243 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Gene3D G3DSA:3.90.740.10 232 399 8.6E-60 T 29-03-2018 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Gene3D G3DSA:1.10.730.10 606 741 1.8E-32 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 SUPERFAMILY SSF50677 225 411 1.47E-54 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 53 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 413 608 6.2E-20 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 805 0.0 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Pfam PF08264 Anticodon-binding domain of tRNA 656 767 1.5E-22 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 399 3.3E-69 T 29-03-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 SUPERFAMILY SSF52374 4 225 1.06E-146 T 29-03-2018 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 SUPERFAMILY SSF52374 412 625 1.06E-146 T 29-03-2018 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Pfam PF09334 tRNA synthetases class I (M) 40 171 5.7E-19 T 29-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 Gene3D G3DSA:3.40.50.620 400 605 8.1E-67 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 486 504 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 558 568 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS02555 ee4cf8716797af6627df31e27c6352d8 805 PRINTS PR00985 Leucyl-tRNA synthetase signature 525 547 6.4E-58 T 29-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 SUPERFAMILY SSF48179 189 355 6.46E-43 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 Gene3D G3DSA:3.40.50.720 1 195 8.0E-16 T 29-03-2018 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 102 5.4E-5 T 29-03-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 Gene3D G3DSA:1.10.1040.10 196 352 2.9E-43 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 187 333 1.1E-37 T 29-03-2018 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 CFE88_RS00380 3c814130eafb8ccf02d14eef954fc80d 356 SUPERFAMILY SSF51735 1 163 1.02E-18 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Gene3D G3DSA:3.10.20.30 1 64 2.3E-24 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Gene3D G3DSA:3.30.980.10 67 146 9.6E-27 T 29-03-2018 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Gene3D G3DSA:3.40.50.800 538 645 1.0E-29 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 513 526 5.0E-46 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 470 498 5.0E-46 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 540 552 5.0E-46 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 331 359 5.0E-46 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 364 387 5.0E-46 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Pfam PF03129 Anticodon binding domain 547 633 3.7E-24 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 SUPERFAMILY SSF55681 242 531 7.96E-96 T 29-03-2018 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Pfam PF02824 TGS domain 4 63 5.0E-16 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Gene3D G3DSA:3.30.930.10 220 537 5.4E-107 T 29-03-2018 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Gene3D G3DSA:3.30.54.20 147 186 1.1E-20 T 29-03-2018 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 324 534 5.4E-33 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 74 635 1.0E-237 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 SUPERFAMILY SSF52954 536 639 1.81E-32 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 SUPERFAMILY SSF81271 4 63 6.32E-18 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 68 641 34.881 T 29-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 1.3E-16 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 SUPERFAMILY SSF55186 66 239 2.88E-67 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 CFE88_RS02900 e62402974875f5c0ca82902381b75214 645 SMART SM00863 169 218 1.7E-24 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 Pfam PF00753 Metallo-beta-lactamase superfamily 13 163 2.3E-6 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 Gene3D G3DSA:3.60.15.10 1 262 7.6E-44 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 SMART SM00450 350 442 4.3E-10 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 Gene3D G3DSA:3.40.250.10 343 440 1.6E-17 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 SUPERFAMILY SSF52821 237 340 4.06E-9 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 SUPERFAMILY SSF52821 362 439 2.62E-21 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 SUPERFAMILY SSF56281 1 256 8.26E-48 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 Pfam PF00581 Rhodanese-like domain 362 439 9.6E-12 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 SMART SM00849 12 195 1.1E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09965 2c6655272aa002c7e77a1d43c4d22a19 442 Gene3D G3DSA:3.40.250.10 263 342 2.0E-8 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 SUPERFAMILY SSF51161 254 445 1.05E-43 T 29-03-2018 IPR011004 Trimeric LpxA-like CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Gene3D G3DSA:2.160.10.10 240 345 1.1E-28 T 29-03-2018 CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 317 350 1.1E-5 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 394 427 7.1E-7 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 259 288 2.6E-4 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Gene3D G3DSA:3.90.550.10 1 239 4.7E-60 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 451 40.786 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Gene3D G3DSA:2.160.10.10 346 450 6.5E-17 T 29-03-2018 CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 450 4.6E-178 T 29-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 Pfam PF00483 Nucleotidyl transferase 5 219 7.7E-24 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 SUPERFAMILY SSF53448 4 252 4.38E-63 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08870 4f510589a77b60e8770528935e029b76 451 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 402 430 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 Pfam PF07690 Major Facilitator Superfamily 159 549 8.1E-57 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 SUPERFAMILY SSF103473 611 642 2.88E-71 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 SUPERFAMILY SSF103473 148 335 2.88E-71 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 SUPERFAMILY SSF103473 388 559 2.88E-71 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 Gene3D G3DSA:1.20.1250.20 149 340 4.5E-33 T 29-03-2018 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 Gene3D G3DSA:1.20.1250.20 399 652 6.5E-31 T 29-03-2018 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 155 634 7.3E-137 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 PRINTS PR01036 Tetracycline resistance protein TetB signature 278 302 4.6E-11 T 29-03-2018 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 PRINTS PR01036 Tetracycline resistance protein TetB signature 442 466 4.6E-11 T 29-03-2018 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 PRINTS PR01036 Tetracycline resistance protein TetB signature 157 181 4.6E-11 T 29-03-2018 CFE88_RS00110 5ac656470d17672526f2c86ace88648c 658 PRINTS PR01036 Tetracycline resistance protein TetB signature 217 239 4.6E-11 T 29-03-2018 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Gene3D G3DSA:3.30.230.70 316 558 6.3E-59 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Gene3D G3DSA:3.30.230.70 12 248 7.1E-55 T 29-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 695 0.0 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 697 30.794 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF46915 239 324 1.18E-15 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF50249 624 698 3.65E-19 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF01138 3' exoribonuclease family, domain 1 14 144 1.5E-22 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF01138 3' exoribonuclease family, domain 1 327 460 1.1E-17 T 29-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Gene3D G3DSA:1.10.10.400 249 315 2.8E-17 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SMART SM00316 624 694 2.4E-26 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 324 5.4E-12 T 29-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Gene3D G3DSA:2.40.50.140 631 700 1.1E-22 T 29-03-2018 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Gene3D G3DSA:3.30.1370.10 559 630 3.9E-13 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF00013 KH domain 560 618 2.7E-9 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF55666 454 552 1.96E-29 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF55666 145 236 2.75E-26 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF54791 559 644 2.88E-22 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 1.2E-11 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF03725 3' exoribonuclease family, domain 2 463 532 9.4E-9 T 29-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF54211 8 144 3.04E-49 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SMART SM00322 556 621 1.8E-11 T 29-03-2018 IPR004087 K Homology domain GO:0003676 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 SUPERFAMILY SSF54211 297 491 5.57E-48 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 PIRSF PIRSF005499 2 701 8.7E-296 T 29-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CFE88_RS05075 826a62b9800927838b6f20dc1ea41802 701 Pfam PF00575 S1 RNA binding domain 623 693 3.3E-20 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 Gene3D G3DSA:1.10.10.10 6 78 4.3E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 SUPERFAMILY SSF48008 83 220 2.51E-19 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 73 5.4E-12 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 SMART SM00345 19 77 4.1E-10 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 SUPERFAMILY SSF46785 10 80 3.79E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 Gene3D G3DSA:1.20.120.530 79 224 9.1E-20 T 29-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 Pfam PF07729 FCD domain 86 208 1.1E-19 T 29-03-2018 IPR011711 GntR, C-terminal CFE88_RS11845 cc616c50282a3a79dc2c27f70d45039c 226 SMART SM00895 86 215 3.5E-10 T 29-03-2018 IPR011711 GntR, C-terminal CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 419 1.1E-177 T 29-03-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 SUPERFAMILY SSF52777 191 418 1.42E-80 T 29-03-2018 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 190 418 1.1E-78 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Gene3D G3DSA:3.90.1170.30 1 44 2.1E-15 T 29-03-2018 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Gene3D G3DSA:3.30.559.10 174 418 9.0E-85 T 29-03-2018 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 SUPERFAMILY SSF47005 118 160 6.02E-6 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Gene3D G3DSA:3.90.1170.30 45 97 0.13 T 29-03-2018 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Pfam PF00364 Biotin-requiring enzyme 3 74 7.2E-20 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Gene3D G3DSA:4.10.320.10 114 173 1.9E-12 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 SUPERFAMILY SSF51230 2 90 8.9E-25 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS04155 36d22bae08ec40ca7e252aa76169d5ac 420 Pfam PF02817 e3 binding domain 124 154 7.6E-8 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS10115 4e2ff39ccf0f98c0baeae214433269c2 47 Gene3D G3DSA:1.10.10.60 1 45 1.8E-10 T 29-03-2018 CFE88_RS10115 4e2ff39ccf0f98c0baeae214433269c2 47 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 28 44 6.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CFE88_RS10115 4e2ff39ccf0f98c0baeae214433269c2 47 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 13 28 6.1E-5 T 29-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CFE88_RS10115 4e2ff39ccf0f98c0baeae214433269c2 47 SUPERFAMILY SSF46689 2 46 1.48E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS10115 4e2ff39ccf0f98c0baeae214433269c2 47 Pfam PF12833 Helix-turn-helix domain 10 45 9.8E-8 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 Pfam PF01300 Telomere recombination 29 203 9.3E-57 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 Pfam PF03481 Putative GTP-binding controlling metal-binding 205 338 2.3E-21 T 29-03-2018 IPR005145 Putative GTP-binding controlling metal-binding domain CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 SUPERFAMILY SSF55821 16 210 6.1E-63 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 PIRSF PIRSF004930 1 344 6.0E-118 T 29-03-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 Gene3D G3DSA:3.90.870.10 7 219 6.8E-72 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS01195 9ae28bb9caa71053409287b2248c796f 347 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 14 212 5.7E-61 T 29-03-2018 IPR006070 YrdC-like domain GO:0003725 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 Gene3D G3DSA:3.20.10.10 180 351 1.1E-52 T 29-03-2018 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 PIRSF PIRSF006468 1 357 1.1E-129 T 29-03-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 Gene3D G3DSA:3.30.470.10 1 179 1.6E-65 T 29-03-2018 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 Pfam PF01063 Amino-transferase class IV 68 309 8.8E-38 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 SUPERFAMILY SSF56752 12 352 1.83E-115 T 29-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 43 355 1.7E-123 T 29-03-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 CFE88_RS08500 9b261c19f7b37f31ca25c55b510b7cf2 358 ProSitePatterns PS00770 Aminotransferases class-IV signature. 232 261 - T 29-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Gene3D G3DSA:3.30.870.10 328 505 2.6E-23 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Pfam PF02503 Polyphosphate kinase middle domain 134 328 1.1E-60 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Pfam PF13090 Polyphosphate kinase C-terminal domain 342 682 3.2E-152 T 29-03-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Gene3D G3DSA:1.20.58.310 18 120 3.3E-37 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Gene3D G3DSA:3.30.1840.10 121 310 1.4E-61 T 29-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 PIRSF PIRSF015589 2 699 2.4E-264 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Gene3D G3DSA:3.30.870.10 506 691 4.2E-34 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 SUPERFAMILY SSF143724 119 317 6.47E-55 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 15 682 4.1E-272 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 SUPERFAMILY SSF56024 326 502 4.4E-56 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 SUPERFAMILY SSF56024 506 686 8.52E-70 T 29-03-2018 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Hamap MF_00347 Polyphosphate kinase [ppk]. 14 686 28.96 T 29-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 SUPERFAMILY SSF140356 13 117 8.37E-38 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CFE88_RS11910 17514b1244324d2810f7d0cec0a91b0c 721 Pfam PF13089 Polyphosphate kinase N-terminal domain 16 121 3.0E-38 T 29-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CFE88_RS10210 5404d892bdc1f3533301ba5fad242808 228 Pfam PF03744 6-carboxyhexanoate--CoA ligase 2 221 1.1E-70 T 29-03-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 CFE88_RS10210 5404d892bdc1f3533301ba5fad242808 228 ProDom PD017229 LIGASE SYNTHASE BIOTIN MAGNESIUM PIMELOYL-COA 6-CARBOXYHEXANOATE--COA BIOSYNTHESIS 6-CARBOXYHEXANOATE-COA BIOW COA 2 199 2.0E-109 T 29-03-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 CFE88_RS10210 5404d892bdc1f3533301ba5fad242808 228 Hamap MF_00668 6-carboxyhexanoate--CoA ligase [bioW]. 1 226 48.285 T 29-03-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 SUPERFAMILY SSF52922 534 662 1.7E-39 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Gene3D G3DSA:3.40.50.920 538 662 2.9E-28 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 SUPERFAMILY SSF52518 344 525 5.89E-61 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 29-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Pfam PF02780 Transketolase, C-terminal domain 551 655 5.8E-9 T 29-03-2018 IPR033248 Transketolase, C-terminal domain CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 SMART SM00861 353 524 2.7E-59 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Gene3D G3DSA:3.40.50.970 2 360 6.3E-102 T 29-03-2018 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Pfam PF02779 Transketolase, pyrimidine binding domain 357 523 1.0E-39 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 6 337 3.8E-144 T 29-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 SUPERFAMILY SSF52518 5 324 7.94E-110 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 661 1.6E-277 T 29-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CFE88_RS04510 88e9ee5d9d88ea4ca366fb8b60290f88 662 Gene3D G3DSA:3.40.50.970 361 532 5.2E-41 T 29-03-2018 CFE88_RS06950 46052af23b496987d1600ddc14685103 413 Gene3D G3DSA:3.90.1150.10 286 411 9.3E-45 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS06950 46052af23b496987d1600ddc14685103 413 PIRSF PIRSF005572 25 410 3.6E-51 T 29-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CFE88_RS06950 46052af23b496987d1600ddc14685103 413 Pfam PF00266 Aminotransferase class-V 29 398 3.8E-161 T 29-03-2018 IPR000192 Aminotransferase class V domain CFE88_RS06950 46052af23b496987d1600ddc14685103 413 Gene3D G3DSA:3.40.640.10 37 285 1.5E-61 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS06950 46052af23b496987d1600ddc14685103 413 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 10 410 1.2E-185 T 29-03-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CFE88_RS06950 46052af23b496987d1600ddc14685103 413 SUPERFAMILY SSF53383 7 405 2.76E-129 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Gene3D G3DSA:2.160.10.10 84 238 1.0E-42 T 29-03-2018 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 175 203 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 SUPERFAMILY SSF51161 86 225 1.39E-50 T 29-03-2018 IPR011004 Trimeric LpxA-like CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 2 236 43.534 T 29-03-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 7 237 2.3E-118 T 29-03-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Gene3D G3DSA:3.30.70.250 4 83 1.9E-33 T 29-03-2018 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 6 88 5.7E-32 T 29-03-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 166 201 2.3E-10 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS04250 86fd436f292da349f83192baebc8c569 240 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 122 157 8.2E-6 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 428 28.963 T 29-03-2018 IPR026593 Protein translocase subunit SecY CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 424 2.3E-147 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 Gene3D G3DSA:1.10.3370.10 1 430 3.1E-150 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 SUPERFAMILY SSF103491 1 418 4.97E-124 T 29-03-2018 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PIRSF PIRSF004557 1 428 3.0E-131 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 147 172 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 308 330 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 173 196 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 268 287 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 68 88 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 363 381 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 110 133 2.9E-98 T 29-03-2018 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 ProSitePatterns PS00756 Protein secY signature 2. 166 183 - T 29-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 Pfam PF00344 SecY translocase 69 412 1.5E-110 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00715 d20bb51ceb1171e30d832b0d39238c07 430 ProSitePatterns PS00755 Protein secY signature 1. 69 88 - T 29-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 1.0E-8 T 29-03-2018 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 SUPERFAMILY SSF57840 1 37 5.76E-17 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.56 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 3.7E-24 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00730 5c3457ccbe3d4cb4b361314b0e18e55a 37 Pfam PF00444 Ribosomal protein L36 1 37 1.5E-19 T 29-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 SMART SM01121 236 552 1.2E-181 T 29-03-2018 IPR033470 Uncharacterised protein, DhaK domain CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 Pfam PF13684 Dihydroxyacetone kinase family 237 552 2.3E-118 T 29-03-2018 IPR033470 Uncharacterised protein, DhaK domain CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 Pfam PF02734 DAK2 domain 35 199 4.0E-41 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 SMART SM01120 35 200 2.1E-72 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 Gene3D G3DSA:3.40.50.620 253 385 0.0028 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 10 552 3.1E-208 T 29-03-2018 IPR019986 DAK2 domain-containing protein YloV CFE88_RS05315 10c215ae276696cdc90372e3425fcbb3 552 SUPERFAMILY SSF101473 3 200 3.66E-48 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 PIRSF PIRSF000521 2 159 1.9E-9 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 PIRSF PIRSF000521 170 396 1.4E-33 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Hamap MF_01689 Ornithine aminotransferase [rocD]. 4 396 67.358 T 29-03-2018 IPR034757 Ornithine aminotransferase, bacterial type GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Gene3D G3DSA:3.40.640.10 177 293 2.2E-43 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Pfam PF00202 Aminotransferase class-III 15 394 1.8E-132 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 4 394 1.1E-161 T 29-03-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 SUPERFAMILY SSF53383 2 395 4.12E-124 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Gene3D G3DSA:3.90.1150.10 1 176 1.4E-40 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Gene3D G3DSA:3.90.1150.10 294 396 6.5E-28 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS06735 4ffbd50c1fa76f0f740b7aeaba7f1c9e 396 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 12 396 37.235 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CFE88_RS08190 eaeb91649c683f3c8a044e17634c2a61 142 Pfam PF09148 Domain of unknown function (DUF1934) 9 135 1.1E-30 T 29-03-2018 IPR015231 Protein of unknown function DUF1934 CFE88_RS08190 eaeb91649c683f3c8a044e17634c2a61 142 SUPERFAMILY SSF50814 4 140 3.07E-40 T 29-03-2018 IPR012674 Calycin CFE88_RS08190 eaeb91649c683f3c8a044e17634c2a61 142 Gene3D G3DSA:2.40.128.20 2 142 3.7E-36 T 29-03-2018 IPR012674 Calycin CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 Gene3D G3DSA:3.30.230.10 4 165 7.8E-29 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 89 100 - T 29-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 Gene3D G3DSA:3.30.70.890 166 290 2.3E-22 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 Hamap MF_00384 Homoserine kinase [thrB]. 5 299 31.48 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 TIGRFAM TIGR00191 thrB: homoserine kinase 5 298 1.5E-83 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 Pfam PF08544 GHMP kinases C terminal 208 281 2.1E-8 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PIRSF PIRSF000676 1 302 5.6E-86 T 29-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 SUPERFAMILY SSF54211 6 148 4.4E-32 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 SUPERFAMILY SSF55060 166 286 5.76E-36 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 Pfam PF00288 GHMP kinases N terminal domain 83 143 4.2E-12 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PRINTS PR00958 Homoserine kinase signature 250 265 5.7E-37 T 29-03-2018 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PRINTS PR00958 Homoserine kinase signature 130 143 5.7E-37 T 29-03-2018 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PRINTS PR00958 Homoserine kinase signature 170 187 5.7E-37 T 29-03-2018 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PRINTS PR00958 Homoserine kinase signature 96 111 5.7E-37 T 29-03-2018 CFE88_RS04575 8cb7177f73a835a1e0a41dc7482b8e57 306 PRINTS PR00958 Homoserine kinase signature 12 27 5.7E-37 T 29-03-2018 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Gene3D G3DSA:3.40.50.620 377 600 6.1E-51 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 1.7E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 392 407 1.7E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 554 563 1.7E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 228 251 1.7E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 520 533 1.7E-32 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Pfam PF06827 Zinc finger found in FPG and IleRS 882 911 5.6E-11 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 SUPERFAMILY SSF47323 645 914 1.87E-79 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 26 634 8.9E-232 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 SUPERFAMILY SSF50677 201 394 9.81E-61 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 829 6.2E-299 T 29-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Gene3D G3DSA:3.40.50.620 41 122 1.8E-29 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Gene3D G3DSA:1.10.730.10 601 792 1.3E-41 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Pfam PF08264 Anticodon-binding domain of tRNA 678 831 5.0E-29 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Gene3D G3DSA:3.90.740.10 187 376 5.7E-61 T 29-03-2018 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Gene3D G3DSA:3.30.2320.20 793 881 1.0E-24 T 29-03-2018 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 913 20.81 T 29-03-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 SUPERFAMILY SSF52374 1 200 1.77E-153 T 29-03-2018 CFE88_RS05480 4f9f60fac2408fa8c7df695db1bd57a1 916 SUPERFAMILY SSF52374 394 641 1.77E-153 T 29-03-2018 CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 116 3.5E-30 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 TIGRFAM TIGR02571 ComEB: ComE operon protein 2 2 151 5.9E-90 T 29-03-2018 IPR013404 Competence operon E, ComEB CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 SUPERFAMILY SSF53927 8 144 3.76E-43 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 70 105 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 Gene3D G3DSA:3.40.140.10 3 149 1.6E-41 T 29-03-2018 CFE88_RS03305 850efda414df3bf2df4a4630045c9a6b 153 PIRSF PIRSF006019 1 149 3.0E-60 T 29-03-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Gene3D G3DSA:1.10.3090.10 143 397 1.0E-37 T 29-03-2018 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 SUPERFAMILY SSF81891 141 397 4.19E-52 T 29-03-2018 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 170 229 4.2E-11 T 29-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Hamap MF_01263 CCA-adding enzyme [cca]. 3 398 39.729 T 29-03-2018 IPR023068 CCA-adding enzyme, firmicutes GO:0001680|GO:0004810|GO:0016437 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 247 394 4.9E-22 T 29-03-2018 IPR032810 CCA-adding enzyme, C-terminal CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 SUPERFAMILY SSF81301 5 140 2.29E-43 T 29-03-2018 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Gene3D G3DSA:3.30.460.10 2 142 4.2E-47 T 29-03-2018 CFE88_RS03940 8216a859df1e05605b3f7b4fc41714f7 400 Pfam PF01743 Poly A polymerase head domain 23 143 1.9E-36 T 29-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CFE88_RS04210 4cf7b86c9f1a5790f306c19d2da95cbc 89 Gene3D G3DSA:3.30.70.100 1 89 3.9E-24 T 29-03-2018 CFE88_RS04210 4cf7b86c9f1a5790f306c19d2da95cbc 89 ProSitePatterns PS00150 Acylphosphatase signature 1. 8 18 - T 29-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CFE88_RS04210 4cf7b86c9f1a5790f306c19d2da95cbc 89 SUPERFAMILY SSF54975 1 87 2.4E-23 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CFE88_RS04210 4cf7b86c9f1a5790f306c19d2da95cbc 89 Pfam PF00708 Acylphosphatase 5 87 5.6E-22 T 29-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 Gene3D G3DSA:3.40.50.1000 1 268 1.0E-44 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 236 1.2E-25 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 ProSitePatterns PS01229 Hypothetical cof family signature 2. 217 239 - T 29-03-2018 CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 263 3.7E-67 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 263 2.0E-54 T 29-03-2018 IPR000150 Cof family GO:0016787 CFE88_RS04570 623c858ec7c71015a7a53dd5db0362c9 268 SUPERFAMILY SSF56784 1 267 1.01E-68 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12625 02649b8e03e1430a1dd922306e94c979 569 Pfam PF01609 Transposase DDE domain 264 515 8.9E-38 T 29-03-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS12625 02649b8e03e1430a1dd922306e94c979 569 Pfam PF05598 Transposase domain (DUF772) 49 117 1.6E-14 T 29-03-2018 IPR008490 Transposase InsH, N-terminal CFE88_RS12625 02649b8e03e1430a1dd922306e94c979 569 Gene3D G3DSA:3.90.350.10 279 498 2.8E-7 T 29-03-2018 IPR014736 Transposase, Tn5-like, core CFE88_RS04085 ad491b4bba28a44037d431d1257b9359 175 Pfam PF01625 Peptide methionine sulfoxide reductase 4 154 1.9E-58 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04085 ad491b4bba28a44037d431d1257b9359 175 SUPERFAMILY SSF55068 2 165 1.44E-68 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04085 ad491b4bba28a44037d431d1257b9359 175 Gene3D G3DSA:3.30.1060.10 1 170 1.3E-62 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04085 ad491b4bba28a44037d431d1257b9359 175 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 4 153 6.5E-59 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04085 ad491b4bba28a44037d431d1257b9359 175 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 160 36.563 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Gene3D G3DSA:3.30.390.30 342 463 4.7E-39 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 2.3E-34 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 10 466 1.3E-169 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Gene3D G3DSA:3.40.50.720 9 41 0.064 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 SUPERFAMILY SSF55424 344 466 1.55E-38 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Gene3D G3DSA:3.50.50.60 240 341 1.2E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 44 54 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 329 3.4E-73 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Gene3D G3DSA:1.10.287.990 42 109 1.6E-22 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PIRSF PIRSF000350 3 458 3.4E-97 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 Gene3D G3DSA:3.50.50.60 122 239 2.2E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 SUPERFAMILY SSF51905 7 339 5.18E-65 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 43 58 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 6.5E-76 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 1.3E-41 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.3E-41 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 1.3E-41 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 1.3E-41 T 29-03-2018 CFE88_RS05860 634d080eb60ebf2db0cd0ec63a616e69 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 1.3E-41 T 29-03-2018 CFE88_RS10660 cf80f9d389f7a2dd0594b2ffd54d5128 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 2 252 1.4E-99 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CFE88_RS10660 cf80f9d389f7a2dd0594b2ffd54d5128 252 Gene3D G3DSA:3.20.20.70 4 248 2.4E-60 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS10660 cf80f9d389f7a2dd0594b2ffd54d5128 252 Pfam PF00977 Histidine biosynthesis protein 5 235 7.0E-80 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 CFE88_RS10660 cf80f9d389f7a2dd0594b2ffd54d5128 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 43.956 T 29-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CFE88_RS10660 cf80f9d389f7a2dd0594b2ffd54d5128 252 SUPERFAMILY SSF51366 2 252 4.0E-73 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 34 168 3.1E-41 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Gene3D G3DSA:3.40.120.10 202 319 1.1E-27 T 29-03-2018 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 214 233 1.1E-9 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 281 296 1.1E-9 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 128 142 1.1E-9 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Gene3D G3DSA:3.40.120.10 320 434 5.2E-29 T 29-03-2018 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 484 525 7.0E-7 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 198 300 2.8E-22 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Gene3D G3DSA:3.30.310.50 446 545 4.5E-18 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 SUPERFAMILY SSF53738 289 432 6.47E-24 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 SUPERFAMILY SSF53738 196 302 3.69E-21 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 SUPERFAMILY SSF55957 423 460 5.1E-11 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 SUPERFAMILY SSF55957 492 544 5.1E-11 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 309 424 1.1E-15 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 Gene3D G3DSA:3.40.120.10 10 201 1.0E-50 T 29-03-2018 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 SUPERFAMILY SSF53738 23 220 1.49E-43 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS11865 5b8b631931af19cdfb69fae8ef00ab50 546 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 129 138 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01215 f37023f161b39501663adffb8e21aa09 209 Gene3D G3DSA:3.40.50.2020 2 207 9.4E-67 T 29-03-2018 CFE88_RS01215 f37023f161b39501663adffb8e21aa09 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 48.494 T 29-03-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CFE88_RS01215 f37023f161b39501663adffb8e21aa09 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 209 3.1E-92 T 29-03-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CFE88_RS01215 f37023f161b39501663adffb8e21aa09 209 SUPERFAMILY SSF53271 4 207 4.59E-73 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS01215 f37023f161b39501663adffb8e21aa09 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 1.7E-76 T 29-03-2018 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 2.8E-108 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 29-03-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 PIRSF PIRSF002155 1 227 2.5E-84 T 29-03-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 45.05 T 29-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 Gene3D G3DSA:3.30.190.20 149 228 1.9E-21 T 29-03-2018 CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 Gene3D G3DSA:3.40.50.790 68 148 1.4E-38 T 29-03-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 7.2E-55 T 29-03-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CFE88_RS08585 25d08317986d0c230f0cd41707e55b5d 231 SUPERFAMILY SSF56808 6 226 5.36E-88 T 29-03-2018 IPR023674 Ribosomal protein L1-like CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 Hamap MF_00020 Acetate kinase [ackA]. 1 399 189.989 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 29-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 SUPERFAMILY SSF53067 157 394 6.74E-90 T 29-03-2018 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PIRSF PIRSF000722 1 399 2.6E-150 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 300 313 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 5 16 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 203 224 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 322 338 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 173 186 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 PRINTS PR00471 Acetate kinase family signature 377 389 3.7E-44 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 Gene3D G3DSA:3.30.420.40 196 406 1.6E-78 T 29-03-2018 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 Pfam PF00871 Acetokinase family 5 389 9.5E-160 T 29-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 29-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 Gene3D G3DSA:3.30.420.40 4 195 1.3E-78 T 29-03-2018 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 SUPERFAMILY SSF53067 3 195 2.01E-71 T 29-03-2018 CFE88_RS02765 b8611fed042bc04234ddbc125a8c826f 417 TIGRFAM TIGR00016 ackA: acetate kinase 2 395 3.9E-164 T 29-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CFE88_RS11855 90c5f51f1e769195f499970597fa86af 452 Pfam PF02447 GntP family permease 6 450 2.6E-173 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CFE88_RS11855 90c5f51f1e769195f499970597fa86af 452 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 7 452 9.2E-186 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CFE88_RS11855 90c5f51f1e769195f499970597fa86af 452 Gene3D G3DSA:1.10.287.70 5 301 0.0056 T 29-03-2018 CFE88_RS11855 90c5f51f1e769195f499970597fa86af 452 PIRSF PIRSF002746 2 452 3.5E-174 T 29-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CFE88_RS02560 c108ac20ee24895700efc779a23de7a0 103 SUPERFAMILY SSF52821 2 97 2.1E-26 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS02560 c108ac20ee24895700efc779a23de7a0 103 Gene3D G3DSA:3.40.250.10 1 99 9.1E-24 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS02560 c108ac20ee24895700efc779a23de7a0 103 SMART SM00450 5 99 2.9E-18 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS02560 c108ac20ee24895700efc779a23de7a0 103 Pfam PF00581 Rhodanese-like domain 5 94 7.8E-13 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS05785 a7e777825baa8500282fb089e628f314 160 ProDom PD094668 YLAL SIMILAR MW0994 BH2628 SE0810 SA0960 1 159 3.0E-88 T 29-03-2018 IPR020229 Uncharacterised protein YlaL CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 SUPERFAMILY SSF53671 1 292 1.27E-89 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 Gene3D G3DSA:3.40.50.1370 1 153 2.7E-54 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 Gene3D G3DSA:3.40.50.1370 154 293 1.5E-39 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 72 81 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 249 254 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 126 143 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 206 215 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 273 287 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00101 Aspartate carbamoyltransferase signature 34 56 1.9E-33 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 44 51 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 140 2.0E-40 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 2.3E-24 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 280 2.3E-24 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 44 63 2.3E-24 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 245 254 2.3E-24 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 146 290 5.9E-22 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 292 4.7E-91 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05440 56a4bfc01251980d634f61d5e49561c7 293 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 293 37.866 T 29-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 Gene3D G3DSA:3.40.50.720 183 343 1.1E-29 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 351 458 5.2E-28 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 SUPERFAMILY SSF51905 20 340 1.19E-56 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 SUPERFAMILY SSF55424 350 468 1.89E-31 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 23 469 9.7E-146 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 189 214 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 25 47 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 162 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 57 72 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 346 367 1.1E-61 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 Gene3D G3DSA:3.30.390.30 349 469 1.1E-32 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 58 68 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 Gene3D G3DSA:3.50.50.60 20 182 6.1E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 24 330 5.0E-69 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 2.6E-35 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.6E-35 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 26 45 2.6E-35 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 189 207 2.6E-35 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 2.6E-35 T 29-03-2018 CFE88_RS10545 c4bf38fad5913302461ad1829bd5f4fd 469 PIRSF PIRSF000350 17 466 1.0E-82 T 29-03-2018 CFE88_RS09580 6732f157816886f4e9c5c965ec3f2dc1 182 Gene3D G3DSA:3.40.630.30 3 182 7.9E-23 T 29-03-2018 CFE88_RS09580 6732f157816886f4e9c5c965ec3f2dc1 182 Pfam PF13302 Acetyltransferase (GNAT) domain 14 150 4.2E-21 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS09580 6732f157816886f4e9c5c965ec3f2dc1 182 SUPERFAMILY SSF55729 7 175 8.77E-41 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06535 8c9cfe28e5218ef52f861e6e19a0c3a0 269 Hamap MF_00361 NAD kinase [nadK]. 1 264 23.608 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CFE88_RS06535 8c9cfe28e5218ef52f861e6e19a0c3a0 269 Pfam PF01513 ATP-NAD kinase 35 189 1.8E-25 T 29-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CFE88_RS06535 8c9cfe28e5218ef52f861e6e19a0c3a0 269 SUPERFAMILY SSF111331 24 262 1.26E-63 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain CFE88_RS06535 8c9cfe28e5218ef52f861e6e19a0c3a0 269 Gene3D G3DSA:3.40.50.10330 1 122 2.3E-24 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 CFE88_RS06535 8c9cfe28e5218ef52f861e6e19a0c3a0 269 Gene3D G3DSA:2.60.200.30 123 239 4.6E-25 T 29-03-2018 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CFE88_RS00450 0aff4a42db505f56a5432b10fb8b1af6 300 Gene3D G3DSA:1.10.3430.10 1 300 4.7E-79 T 29-03-2018 CFE88_RS00450 0aff4a42db505f56a5432b10fb8b1af6 300 Pfam PF03253 Urea transporter 4 293 4.4E-81 T 29-03-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 CFE88_RS00450 0aff4a42db505f56a5432b10fb8b1af6 300 TIGRFAM TIGR03441 urea_trans_yut: urea transporter 2 292 7.3E-116 T 29-03-2018 IPR017807 Urea transporter, bacteria GO:0015204|GO:0016021|GO:0071918 CFE88_RS00450 0aff4a42db505f56a5432b10fb8b1af6 300 PIRSF PIRSF016502 1 300 5.2E-91 T 29-03-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 Pfam PF05256 Uncharacterised protein family (UPF0223) 2 86 1.8E-34 T 29-03-2018 IPR007920 Protein of unknown function UPF0223 CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 SUPERFAMILY SSF158504 4 86 1.24E-33 T 29-03-2018 IPR023324 BH2638-like domain CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 ProDom PD062738 UPF0223 FAMILY UNCHARACTERISED CYTOSOLIC SUPERFAMILY YKTA LMO1058/LIN1050 INOSITOL MW0980 M6_SPY0948 1 80 4.0E-40 T 29-03-2018 IPR007920 Protein of unknown function UPF0223 CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 Gene3D G3DSA:1.10.220.80 12 87 7.1E-29 T 29-03-2018 IPR023324 BH2638-like domain CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 Hamap MF_01041 UPF0223 protein . 1 88 25.604 T 29-03-2018 IPR007920 Protein of unknown function UPF0223 CFE88_RS05855 79503378ee0f9b16e1ed2ad253799485 92 PIRSF PIRSF037260 1 90 3.1E-40 T 29-03-2018 IPR007920 Protein of unknown function UPF0223 CFE88_RS10910 1a0715742c6978da98efb6939634f5a4 148 SUPERFAMILY SSF46785 11 133 8.51E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10910 1a0715742c6978da98efb6939634f5a4 148 Gene3D G3DSA:1.10.10.10 2 126 3.6E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10910 1a0715742c6978da98efb6939634f5a4 148 Pfam PF12802 MarR family 31 89 7.2E-11 T 29-03-2018 CFE88_RS10910 1a0715742c6978da98efb6939634f5a4 148 SMART SM00347 26 126 8.4E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS00505 c271876b9e8e9c6b545f2060886a1cd3 163 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 161 34.791 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 CFE88_RS00505 c271876b9e8e9c6b545f2060886a1cd3 163 Pfam PF01967 MoaC family 15 153 7.7E-53 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CFE88_RS00505 c271876b9e8e9c6b545f2060886a1cd3 163 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 155 1.8E-60 T 29-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 CFE88_RS00505 c271876b9e8e9c6b545f2060886a1cd3 163 SUPERFAMILY SSF55040 11 158 6.28E-57 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CFE88_RS00505 c271876b9e8e9c6b545f2060886a1cd3 163 Gene3D G3DSA:3.30.70.640 2 161 2.3E-67 T 29-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 Gene3D G3DSA:1.20.5.40 107 133 1.3E-14 T 29-03-2018 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 SMART SM00857 2 138 1.8E-59 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 Gene3D G3DSA:1.10.10.60 134 184 2.8E-12 T 29-03-2018 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 ProSitePatterns PS00398 Site-specific recombinases signature 2. 55 67 - T 29-03-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 SUPERFAMILY SSF46689 140 182 3.23E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 Pfam PF00239 Resolvase, N terminal domain 3 138 7.1E-45 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 Gene3D G3DSA:3.40.50.1390 2 106 1.5E-33 T 29-03-2018 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 Pfam PF02796 Helix-turn-helix domain of resolvase 140 183 4.3E-17 T 29-03-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12590 1fa76d75345975e0041476ea97b22d37 192 SUPERFAMILY SSF53041 2 138 4.97E-43 T 29-03-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 SUPERFAMILY SSF53850 50 485 1.99E-84 T 29-03-2018 CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 PIRSF PIRSF002741 27 491 4.3E-66 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 404 4.1E-60 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 Gene3D G3DSA:3.40.190.10 144 267 2.3E-32 T 29-03-2018 CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 Gene3D G3DSA:3.90.76.10 55 143 2.5E-11 T 29-03-2018 CFE88_RS12170 a73e67a789fdfc5c898788b387bd0e51 491 Gene3D G3DSA:3.10.105.10 268 461 3.9E-32 T 29-03-2018 CFE88_RS03770 21f0c31bdda8c0880073c551131724ed 149 Gene3D G3DSA:1.10.10.10 1 87 2.1E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03770 21f0c31bdda8c0880073c551131724ed 149 SUPERFAMILY SSF46785 7 141 3.16E-38 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03770 21f0c31bdda8c0880073c551131724ed 149 Pfam PF01475 Ferric uptake regulator family 15 136 1.2E-38 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 Gene3D G3DSA:1.10.1660.10 60 135 3.4E-5 T 29-03-2018 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 SUPERFAMILY SSF48695 187 234 1.44E-6 T 29-03-2018 IPR011031 Multihaem cytochrome CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 Pfam PF13411 MerR HTH family regulatory protein 4 72 1.4E-18 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 SUPERFAMILY SSF46955 4 124 1.54E-22 T 29-03-2018 IPR009061 Putative DNA-binding domain CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 Gene3D G3DSA:1.10.1660.10 2 59 6.7E-19 T 29-03-2018 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 5.3E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 5.3E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 5.3E-5 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS11835 426e1a484a333b76c17f9032c7af5bbd 238 SMART SM00422 4 73 2.6E-12 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS01940 d1e121d652c5f0e76a7819f66610cbb8 176 Pfam PF03061 Thioesterase superfamily 31 102 2.3E-16 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CFE88_RS01940 d1e121d652c5f0e76a7819f66610cbb8 176 SUPERFAMILY SSF54637 9 159 1.87E-45 T 29-03-2018 IPR029069 HotDog domain CFE88_RS01940 d1e121d652c5f0e76a7819f66610cbb8 176 Gene3D G3DSA:3.10.129.10 1 171 3.6E-47 T 29-03-2018 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Gene3D G3DSA:3.40.50.300 248 681 4.7E-17 T 29-03-2018 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Pfam PF04851 Type III restriction enzyme, res subunit 251 476 1.0E-5 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 179 5.3E-30 T 29-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Gene3D G3DSA:3.30.420.10 2 173 1.7E-42 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SMART SM00479 5 171 2.2E-39 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Pfam PF00929 Exonuclease 8 161 1.5E-29 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SMART SM00491 733 861 1.9E-12 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SUPERFAMILY SSF52540 401 470 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SUPERFAMILY SSF52540 643 657 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SUPERFAMILY SSF52540 690 856 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SUPERFAMILY SSF52540 262 319 1.78E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Gene3D G3DSA:3.40.50.300 694 902 1.5E-12 T 29-03-2018 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 Pfam PF13307 Helicase C-terminal domain 715 873 1.4E-32 T 29-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 TIGRFAM TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase 5 894 0.0 T 29-03-2018 IPR006310 DnaQ exonuclease/DinG helicase, predicted CFE88_RS03950 1a49b5a4462b48536b154a5479b21e68 902 SUPERFAMILY SSF53098 4 184 4.18E-48 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 SUPERFAMILY SSF53223 4 102 8.06E-34 T 29-03-2018 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 112 189 2.2E-9 T 29-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 266 33.747 T 29-03-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 Gene3D G3DSA:3.40.50.720 112 270 2.2E-22 T 29-03-2018 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 SUPERFAMILY SSF51735 103 266 1.31E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 90 1.0E-30 T 29-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 6 268 2.0E-88 T 29-03-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CFE88_RS03270 1329c079866f3cebf50e8fd0c26f2612 272 Gene3D G3DSA:3.40.50.10860 2 111 4.1E-42 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF00746 LPXTG cell wall anchor motif 2148 2190 4.4E-10 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08017 Fibrinogen binding protein 55 309 1.8E-8 T 29-03-2018 IPR012969 Fibrinogen binding protein CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1967 1987 0.33 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1875 1939 2.5E-5 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1015 1080 6.6E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1187 1252 6.6E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1359 1424 6.6E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1703 1768 5.7E-5 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1531 1595 9.2E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1789 1854 8.5E-5 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 845 908 2.7E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1273 1338 6.6E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1101 1165 3.3E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1647 1682 5.0E-5 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 1445 1510 6.6E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF08428 Rib/alpha-like repeat 929 993 3.3E-6 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 2155 2189 4.6E-7 T 29-03-2018 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 Pfam PF04650 YSIRK type signal peptide 13 38 9.1E-12 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS07720 31a535222e09fa690adba9c9d28b4b4f 2194 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 10 48 6.4E-14 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 SMART SM00278 202 221 0.01 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 SMART SM00278 172 191 0.0073 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 Gene3D G3DSA:3.10.560.10 59 163 7.5E-10 T 29-03-2018 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 SUPERFAMILY SSF47781 136 223 2.67E-27 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 Pfam PF12836 Helix-hairpin-helix motif 161 223 9.3E-23 T 29-03-2018 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 Gene3D G3DSA:1.10.150.280 164 224 1.7E-18 T 29-03-2018 CFE88_RS03300 cde4f59bba565eb2ba95cba94fcb8c21 224 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 164 223 1.4E-17 T 29-03-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 PIRSF PIRSF000239 1 189 4.7E-48 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 Pfam PF00578 AhpC/TSA family 11 135 3.0E-33 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 189 9.2E-98 T 29-03-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 Gene3D G3DSA:3.40.30.10 4 156 1.1E-31 T 29-03-2018 CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 158 179 1.9E-4 T 29-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 SUPERFAMILY SSF52833 3 188 2.95E-51 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS09350 5681b3ca91a66d889de4b2710fe769f9 189 Gene3D G3DSA:3.30.1020.10 157 184 7.4E-6 T 29-03-2018 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 371 382 3.8E-25 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 314 334 3.8E-25 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 350 366 3.8E-25 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 434 450 3.8E-25 T 29-03-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Pfam PF03413 Peptidase propeptide and YPEB domain 129 201 1.9E-11 T 29-03-2018 IPR025711 PepSY domain CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Gene3D G3DSA:3.10.170.10 210 363 3.0E-40 T 29-03-2018 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Gene3D G3DSA:1.10.390.10 364 507 4.5E-46 T 29-03-2018 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 SUPERFAMILY SSF55486 208 507 8.06E-106 T 29-03-2018 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Gene3D G3DSA:3.10.450.40 128 204 1.0E-7 T 29-03-2018 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 211 359 8.3E-42 T 29-03-2018 IPR013856 Peptidase M4 domain GO:0004222 CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 67 115 3.0E-10 T 29-03-2018 IPR011096 FTP domain CFE88_RS10860 11e21e36b62ecd57e6cec23820589a1f 507 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 362 507 7.6E-47 T 29-03-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 CFE88_RS10895 34177115166d74e9292908341ec60c20 388 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 42 287 1.8E-68 T 29-03-2018 IPR019079 Capsule synthesis protein, CapA CFE88_RS10895 34177115166d74e9292908341ec60c20 388 Gene3D G3DSA:3.60.21.10 32 355 5.2E-50 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10895 34177115166d74e9292908341ec60c20 388 SUPERFAMILY SSF56300 40 293 1.26E-38 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10895 34177115166d74e9292908341ec60c20 388 SMART SM00854 41 287 4.3E-90 T 29-03-2018 IPR019079 Capsule synthesis protein, CapA CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 Hamap MF_01511 GMP reductase [guaC]. 1 324 64.736 T 29-03-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 SUPERFAMILY SSF51412 3 314 2.09E-91 T 29-03-2018 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 TIGRFAM TIGR01306 GMP_reduct_2: guanosine monophosphate reductase 3 323 5.7E-205 T 29-03-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 Gene3D G3DSA:3.20.20.70 2 324 1.8E-67 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 SMART SM01240 2 325 7.2E-111 T 29-03-2018 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 5 310 5.1E-68 T 29-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 PIRSF PIRSF036500 1 325 9.3E-198 T 29-03-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 CFE88_RS04540 c4507d2a9c1671f437cede97625f0228 325 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 164 176 - T 29-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CFE88_RS05625 5c850e42690520370b7a578b4c092901 204 Gene3D G3DSA:1.20.1300.10 1 204 1.0E-47 T 29-03-2018 CFE88_RS05625 5c850e42690520370b7a578b4c092901 204 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 7 203 1.8E-40 T 29-03-2018 IPR011138 Succinate dehydrogenase cytochrome b558 subunit CFE88_RS05625 5c850e42690520370b7a578b4c092901 204 PIRSF PIRSF000170 2 204 3.8E-101 T 29-03-2018 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute CFE88_RS05625 5c850e42690520370b7a578b4c092901 204 SUPERFAMILY SSF81343 3 204 2.62E-57 T 29-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05625 5c850e42690520370b7a578b4c092901 204 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 92 192 1.7E-12 T 29-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS08065 9a1ab34ada7da53b5df0eb1ca1ea9c88 154 Pfam PF03334 Na+/H+ antiporter subunit 15 96 1.7E-21 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CFE88_RS08065 9a1ab34ada7da53b5df0eb1ca1ea9c88 154 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 14 103 1.3E-24 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 4.3E-39 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 Gene3D G3DSA:3.40.50.720 48 257 2.1E-58 T 29-03-2018 CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 Gene3D G3DSA:3.40.50.720 2 47 2.8E-10 T 29-03-2018 CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 1.6E-66 T 29-03-2018 CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 5.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 5.4E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 SUPERFAMILY SSF51735 6 253 4.57E-81 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS00585 d410001eb5d0a6b631810f6f31b6933c 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 420 33.409 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 Gene3D G3DSA:3.40.50.800 320 423 1.0E-21 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 Pfam PF03129 Anticodon binding domain 332 420 8.5E-19 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 410 8.4E-154 T 29-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 SUPERFAMILY SSF52954 329 420 2.27E-27 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 Pfam PF13393 Histidyl-tRNA synthetase 7 313 8.2E-47 T 29-03-2018 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 Gene3D G3DSA:3.30.930.10 1 319 7.8E-68 T 29-03-2018 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 SUPERFAMILY SSF55681 1 319 1.76E-93 T 29-03-2018 CFE88_RS03115 7ad066875c44ff97529f9b56fe240479 424 PIRSF PIRSF001549 1 422 2.0E-123 T 29-03-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CFE88_RS02340 718aa304711c2f414a9937d282eb1b6d 184 Gene3D G3DSA:3.40.50.1820 125 178 0.0012 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02340 718aa304711c2f414a9937d282eb1b6d 184 Pfam PF06821 Serine hydrolase 4 173 9.3E-18 T 29-03-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 CFE88_RS02340 718aa304711c2f414a9937d282eb1b6d 184 Gene3D G3DSA:3.40.50.1820 2 106 8.0E-9 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02340 718aa304711c2f414a9937d282eb1b6d 184 SUPERFAMILY SSF53474 3 181 6.28E-30 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Gene3D G3DSA:3.40.1190.10 101 305 2.8E-47 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 445 33.779 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 443 7.3E-121 T 29-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 SUPERFAMILY SSF53623 102 305 2.62E-49 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 309 375 9.9E-9 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 SUPERFAMILY SSF53244 307 443 2.84E-39 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Gene3D G3DSA:3.90.190.20 312 444 2.6E-33 T 29-03-2018 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Pfam PF08245 Mur ligase middle domain 116 287 5.7E-33 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 Gene3D G3DSA:3.40.50.720 3 100 6.5E-14 T 29-03-2018 CFE88_RS05530 848ede5831ac4d73cfed876570864050 449 SUPERFAMILY SSF51984 6 99 1.09E-15 T 29-03-2018 CFE88_RS08025 28e1ea695c7c8814cf5d9dbdea014b80 264 SMART SM00382 49 228 3.8E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08025 28e1ea695c7c8814cf5d9dbdea014b80 264 Pfam PF00005 ABC transporter 40 171 7.1E-17 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS08025 28e1ea695c7c8814cf5d9dbdea014b80 264 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS08025 28e1ea695c7c8814cf5d9dbdea014b80 264 SUPERFAMILY SSF52540 36 235 1.01E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08025 28e1ea695c7c8814cf5d9dbdea014b80 264 Gene3D G3DSA:3.40.50.300 1 260 6.9E-49 T 29-03-2018 CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 SMART SM00852 18 166 3.1E-27 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 Gene3D G3DSA:3.40.980.10 1 172 5.5E-35 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 SUPERFAMILY SSF53218 9 171 1.83E-40 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 Pfam PF00994 Probable molybdopterin binding domain 18 165 4.9E-33 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 PIRSF PIRSF006443 1 174 2.2E-61 T 29-03-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 161 5.0E-34 T 29-03-2018 IPR001453 MoaB/Mog domain CFE88_RS00500 de854cb35c57d0dec20a2e8ef7bd029d 176 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 79 92 - T 29-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CFE88_RS08090 98c6569cdf06e92a756296aa6618631e 141 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 7 131 1.2E-31 T 29-03-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS04700 f3d3def4aded47d8411bd7d47de8cab0 608 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 470 592 3.4E-12 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS04700 f3d3def4aded47d8411bd7d47de8cab0 608 SUPERFAMILY SSF54001 27 151 1.57E-10 T 29-03-2018 CFE88_RS04700 f3d3def4aded47d8411bd7d47de8cab0 608 Pfam PF05257 CHAP domain 31 120 3.6E-8 T 29-03-2018 IPR007921 CHAP domain CFE88_RS04700 f3d3def4aded47d8411bd7d47de8cab0 608 SMART SM00047 457 603 3.0E-43 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS04700 f3d3def4aded47d8411bd7d47de8cab0 608 Gene3D G3DSA:1.10.530.10 460 593 9.1E-24 T 29-03-2018 CFE88_RS04425 136e1b2c1cdf1bfe060f504701b0830b 171 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 162 34.869 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04425 136e1b2c1cdf1bfe060f504701b0830b 171 Pfam PF01625 Peptide methionine sulfoxide reductase 5 156 2.3E-58 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04425 136e1b2c1cdf1bfe060f504701b0830b 171 Gene3D G3DSA:3.30.1060.10 1 167 3.4E-61 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04425 136e1b2c1cdf1bfe060f504701b0830b 171 SUPERFAMILY SSF55068 2 157 1.01E-64 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04425 136e1b2c1cdf1bfe060f504701b0830b 171 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 155 8.5E-57 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 85 118 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 Gene3D G3DSA:3.40.1010.10 4 129 6.7E-39 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 Gene3D G3DSA:3.30.950.10 130 261 1.6E-40 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 5 239 5.2E-94 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 217 8.6E-52 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 10 24 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS11225 f46e65607f97a6136c254369323af3aa 262 SUPERFAMILY SSF53790 3 248 4.32E-81 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS01135 6ec1c686172f92ecfed2982e4e213687 178 TIGRFAM TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta subunit 13 93 7.9E-32 T 29-03-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 CFE88_RS01135 6ec1c686172f92ecfed2982e4e213687 178 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 15 81 9.5E-10 T 29-03-2018 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 CFE88_RS01135 6ec1c686172f92ecfed2982e4e213687 178 Hamap MF_00357 Probable DNA-directed RNA polymerase subunit delta [rpoE]. 9 168 14.354 T 29-03-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 400 419 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 338 358 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 77 99 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 302 326 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 3.5E-12 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 442 9.7E-93 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 Pfam PF07690 Major Facilitator Superfamily 19 409 2.3E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 Gene3D G3DSA:1.20.1250.20 257 472 1.0E-24 T 29-03-2018 CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 SUPERFAMILY SSF103473 248 469 1.96E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 SUPERFAMILY SSF103473 7 195 1.96E-62 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10480 448903ff845fc3ed3c40d212597dd8e2 472 Gene3D G3DSA:1.20.1250.20 9 196 1.1E-34 T 29-03-2018 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 Gene3D G3DSA:1.10.287.1080 233 352 5.1E-32 T 29-03-2018 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 SUPERFAMILY SSF53790 4 265 4.65E-29 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 Gene3D G3DSA:3.40.1010.10 3 120 7.5E-12 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 257 330 8.4E-26 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 SUPERFAMILY SSF101386 238 333 5.89E-20 T 29-03-2018 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 206 6.4E-14 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08840 96f9bb8bfda0e090e330529d475600ac 396 PIRSF PIRSF002845 1 387 2.5E-153 T 29-03-2018 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 Pfam PF14450 Cell division protein FtsA 203 364 2.0E-18 T 29-03-2018 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 Hamap MF_02033 Cell division protein FtsA [ftsA]. 2 463 22.789 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 SUPERFAMILY SSF53067 5 187 1.94E-34 T 29-03-2018 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 PIRSF PIRSF003101 1 463 2.4E-91 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 Gene3D G3DSA:3.30.420.40 1 183 5.1E-21 T 29-03-2018 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 SMART SM00842 6 193 2.8E-44 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 SUPERFAMILY SSF53067 195 361 1.57E-35 T 29-03-2018 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 6 364 1.7E-79 T 29-03-2018 IPR020823 Cell division protein FtsA GO:0007049 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 Gene3D G3DSA:3.30.420.150 197 414 4.7E-20 T 29-03-2018 CFE88_RS05520 b565484c46ef0a67ec3927dfa9ff302e 464 Pfam PF02491 SHS2 domain inserted in FTSA 84 158 8.7E-10 T 29-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 CFE88_RS04545 d89c28e0f5c3018a0eead137eabad95e 89 Gene3D G3DSA:4.10.830.10 1 89 3.4E-36 T 29-03-2018 CFE88_RS04545 d89c28e0f5c3018a0eead137eabad95e 89 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 89 25.146 T 29-03-2018 IPR023036 Ribosomal protein S14, bacterial/plastid CFE88_RS04545 d89c28e0f5c3018a0eead137eabad95e 89 ProSitePatterns PS00527 Ribosomal protein S14 signature. 50 73 - T 29-03-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS04545 d89c28e0f5c3018a0eead137eabad95e 89 Pfam PF00253 Ribosomal protein S14p/S29e 36 88 5.1E-28 T 29-03-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS04545 d89c28e0f5c3018a0eead137eabad95e 89 SUPERFAMILY SSF57716 2 89 1.14E-31 T 29-03-2018 CFE88_RS06555 bcbbbb9fc904211dd186498b8d0ce7ac 121 Pfam PF01152 Bacterial-like globin 6 118 2.3E-26 T 29-03-2018 IPR001486 Truncated hemoglobin GO:0019825 CFE88_RS06555 bcbbbb9fc904211dd186498b8d0ce7ac 121 Gene3D G3DSA:1.10.490.10 1 121 3.5E-27 T 29-03-2018 CFE88_RS06555 bcbbbb9fc904211dd186498b8d0ce7ac 121 SUPERFAMILY SSF46458 4 120 3.6E-31 T 29-03-2018 IPR009050 Globin-like CFE88_RS09680 34a539927368346115b07af01f925a6b 625 SUPERFAMILY SSF51905 3 64 7.74E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 SUPERFAMILY SSF51905 95 258 7.74E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 Pfam PF01134 Glucose inhibited division protein A 6 394 3.3E-168 T 29-03-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 Gene3D G3DSA:3.50.50.60 2 262 7.4E-69 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 SMART SM01228 542 613 3.1E-41 T 29-03-2018 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 Pfam PF13932 GidA associated domain 399 612 1.1E-79 T 29-03-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 365 388 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 3 620 41.949 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 5 617 3.9E-287 T 29-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 270 284 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.5E-5 T 29-03-2018 CFE88_RS09680 34a539927368346115b07af01f925a6b 625 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 1.5E-5 T 29-03-2018 CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 SMART SM00861 4 179 4.2E-58 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 SUPERFAMILY SSF52922 188 324 8.9E-41 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 Pfam PF02780 Transketolase, C-terminal domain 194 315 2.7E-40 T 29-03-2018 IPR033248 Transketolase, C-terminal domain CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 Gene3D G3DSA:3.40.50.970 1 194 2.0E-62 T 29-03-2018 CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 7.2E-39 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 SUPERFAMILY SSF52518 3 192 5.18E-65 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05870 662a09e5a5501c947d7149f546510bf4 325 Gene3D G3DSA:3.40.50.920 195 324 1.1E-36 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS03755 6cbfdf36ea2b63f80d0b71d00c6f22e4 252 Gene3D G3DSA:3.40.50.720 1 217 5.8E-34 T 29-03-2018 CFE88_RS03755 6cbfdf36ea2b63f80d0b71d00c6f22e4 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.1E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS03755 6cbfdf36ea2b63f80d0b71d00c6f22e4 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.1E-5 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS03755 6cbfdf36ea2b63f80d0b71d00c6f22e4 252 Pfam PF00106 short chain dehydrogenase 4 187 5.7E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS03755 6cbfdf36ea2b63f80d0b71d00c6f22e4 252 SUPERFAMILY SSF51735 3 248 8.06E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04065 220b371e5dcccff8365d17f836143785 121 SUPERFAMILY SSF52540 20 118 2.71E-30 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04065 220b371e5dcccff8365d17f836143785 121 Pfam PF00005 ABC transporter 17 69 1.0E-11 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04065 220b371e5dcccff8365d17f836143785 121 Gene3D G3DSA:3.40.50.300 1 120 4.1E-30 T 29-03-2018 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SUPERFAMILY SSF81301 199 371 1.37E-64 T 29-03-2018 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SMART SM00954 240 350 1.5E-69 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Gene3D G3DSA:3.10.20.30 389 462 8.3E-21 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SMART SM00471 46 158 7.4E-7 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Gene3D G3DSA:3.30.70.260 649 729 1.3E-8 T 29-03-2018 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SUPERFAMILY SSF55021 650 728 1.68E-6 T 29-03-2018 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Pfam PF13291 ACT domain 649 726 2.1E-17 T 29-03-2018 IPR002912 ACT domain CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Pfam PF04607 Region found in RelA / SpoT proteins 240 350 3.3E-40 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Pfam PF13328 HD domain 34 180 2.8E-46 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 32 725 8.7E-241 T 29-03-2018 IPR004811 RelA/SpoT family GO:0015969 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Gene3D G3DSA:3.30.460.10 197 330 5.6E-44 T 29-03-2018 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SUPERFAMILY SSF81271 382 454 1.96E-22 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 Pfam PF02824 TGS domain 395 454 2.8E-20 T 29-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CFE88_RS03100 3ed58f139d481c9e6b947390b33e8621 729 SUPERFAMILY SSF109604 9 195 1.04E-72 T 29-03-2018 CFE88_RS02305 7eaeae3ef78bab1f3df1656cbcb1b4b5 246 SUPERFAMILY SSF52540 3 226 1.07E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02305 7eaeae3ef78bab1f3df1656cbcb1b4b5 246 Gene3D G3DSA:3.40.50.300 1 240 4.4E-60 T 29-03-2018 CFE88_RS02305 7eaeae3ef78bab1f3df1656cbcb1b4b5 246 SMART SM00382 27 209 1.7E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS02305 7eaeae3ef78bab1f3df1656cbcb1b4b5 246 Pfam PF00005 ABC transporter 19 161 4.5E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS02305 7eaeae3ef78bab1f3df1656cbcb1b4b5 246 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS01780 3764133df31f990b97dc13a459b2cbf1 208 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 117 169 4.5E-9 T 29-03-2018 IPR019264 Domain of unknown function DUF2179 CFE88_RS01780 3764133df31f990b97dc13a459b2cbf1 208 Hamap MF_01515 UPF0316 protein . 9 177 31.672 T 29-03-2018 IPR022930 Protein of unknown function UPF0316 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 Gene3D G3DSA:1.20.1250.20 1 195 3.0E-26 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 Pfam PF07690 Major Facilitator Superfamily 12 397 1.5E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 11 35 6.9E-11 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 101 121 6.9E-11 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 131 155 6.9E-11 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 388 407 6.9E-11 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 Gene3D G3DSA:1.20.1250.20 250 445 1.4E-19 T 29-03-2018 CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 SUPERFAMILY SSF103473 241 439 1.2E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00930 2e520c846ceb15b71b4eba0a3347f690 445 SUPERFAMILY SSF103473 9 196 1.2E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 SUPERFAMILY SSF52540 9 203 1.13E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 166 2.9E-29 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 SUPERFAMILY SSF54814 179 294 1.6E-40 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Pfam PF01926 50S ribosome-binding GTPase 9 123 6.4E-24 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 TIGRFAM TIGR00436 era: GTP-binding protein Era 7 277 1.9E-102 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Hamap MF_00367 GTPase Era [era]. 4 294 38.614 T 29-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Gene3D G3DSA:3.40.50.300 60 192 1.4E-17 T 29-03-2018 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Gene3D G3DSA:1.20.120.430 1 59 2.3E-16 T 29-03-2018 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Pfam PF07650 KH domain 206 283 5.7E-23 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS03415 6f8c396843d036f39a842ce1b0467e5f 299 Gene3D G3DSA:3.30.300.20 193 297 1.0E-44 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 PRINTS PR00990 Ribokinase signature 108 121 2.7E-31 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 PRINTS PR00990 Ribokinase signature 36 55 2.7E-31 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 PRINTS PR00990 Ribokinase signature 176 191 2.7E-31 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 PRINTS PR00990 Ribokinase signature 8 29 2.7E-31 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 PRINTS PR00990 Ribokinase signature 220 231 2.7E-31 T 29-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 Gene3D G3DSA:3.40.1190.20 2 307 7.8E-79 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 6 303 1.7E-111 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 SUPERFAMILY SSF53613 4 305 1.08E-82 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 Hamap MF_01987 Ribokinase [rbsK]. 4 305 26.95 T 29-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CFE88_RS11650 cc3a430cc137602f99fe4a530e31f5ed 307 Pfam PF00294 pfkB family carbohydrate kinase 4 298 9.8E-66 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 101 116 - T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 TIGRFAM TIGR00835 agcS: amino acid carrier protein 24 449 4.4E-153 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 Pfam PF01235 Sodium:alanine symporter family 67 461 1.2E-162 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 192 210 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 418 438 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 311 329 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 358 380 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 220 239 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS04445 8593f4a9556b56549f6a5271eeffdd5d 485 PRINTS PR00175 Sodium/alanine symporter signature 101 123 7.3E-60 T 29-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CFE88_RS08220 1afeba6a8cc5dfe0d83c1ecb90a271b1 258 SMART SM01001 119 251 3.2E-33 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS08220 1afeba6a8cc5dfe0d83c1ecb90a271b1 258 Gene3D G3DSA:3.40.50.7700 112 256 6.6E-33 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS08220 1afeba6a8cc5dfe0d83c1ecb90a271b1 258 Pfam PF00731 AIR carboxylase 121 248 1.5E-13 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS08220 1afeba6a8cc5dfe0d83c1ecb90a271b1 258 SUPERFAMILY SSF52255 119 251 7.98E-28 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 SUPERFAMILY SSF46609 1 90 1.31E-39 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 4.9E-36 T 29-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PIRSF PIRSF000349 1 199 8.8E-83 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 193 3.6E-43 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 9.2E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 9.2E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PRINTS PR01703 Manganese superoxide dismutase signature 123 131 9.2E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PRINTS PR01703 Manganese superoxide dismutase signature 159 171 9.2E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 9.2E-28 T 29-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 SUPERFAMILY SSF54719 91 197 4.45E-46 T 29-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 Gene3D G3DSA:1.10.287.990 20 89 1.6E-31 T 29-03-2018 CFE88_RS03485 021bdb8083a83e6c84e6150d621631fe 199 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 161 168 - T 29-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 137 149 5.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 107 121 5.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 121 137 5.1E-5 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 Pfam PF04542 Sigma-70 region 2 7 73 4.0E-6 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 Gene3D G3DSA:1.10.1740.10 1 72 1.4E-8 T 29-03-2018 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 Pfam PF00196 Bacterial regulatory proteins, luxR family 106 150 2.6E-7 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 Gene3D G3DSA:1.10.10.10 98 157 3.9E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 SUPERFAMILY SSF88946 2 82 1.37E-5 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 SUPERFAMILY SSF46894 98 150 4.08E-8 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS02480 f445846beb635a058b16ab4053c60878 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 153 3.5E-15 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 348 359 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 314 339 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 142 164 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 172 194 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 371 388 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PRINTS PR00477 Phosphoglycerate kinase family signature 195 214 1.5E-91 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 SUPERFAMILY SSF53748 4 395 2.83E-150 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 Gene3D G3DSA:3.40.50.1260 184 383 2.6E-80 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 Pfam PF00162 Phosphoglycerate kinase 6 385 2.0E-152 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 PIRSF PIRSF000724 1 396 1.1E-141 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 395 40.59 T 29-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07290 93bd7f866a970341ab0fe01c5b35dfa0 396 Gene3D G3DSA:3.40.50.1260 3 183 3.6E-68 T 29-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Gene3D G3DSA:3.10.28.10 14 98 2.2E-9 T 29-03-2018 IPR027434 Homing endonuclease GO:0004519 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Pfam PF02650 WhiA C-terminal HTH domain 219 303 3.2E-36 T 29-03-2018 IPR023054 Sporulation regulator WhiA, C-terminal CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 304 6.5E-133 T 29-03-2018 IPR033981 Sporulation regulator WhiA-like CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 306 35.001 T 29-03-2018 IPR003802 Sporulation regulator WhiA GO:0043937 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Pfam PF14527 WhiA LAGLIDADG-like domain 124 216 7.6E-35 T 29-03-2018 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 SUPERFAMILY SSF55608 119 220 5.33E-18 T 29-03-2018 IPR027434 Homing endonuclease GO:0004519 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Gene3D G3DSA:3.10.28.10 122 202 1.8E-14 T 29-03-2018 IPR027434 Homing endonuclease GO:0004519 CFE88_RS07340 5f78a3d3d3194d6e722771a69d3e7a29 314 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 19 103 5.5E-33 T 29-03-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 43.499 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 Gene3D G3DSA:3.40.50.10490 5 260 4.4E-107 T 29-03-2018 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 Pfam PF00318 Ribosomal protein S2 9 224 2.4E-101 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.4E-41 T 29-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 7.9E-111 T 29-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 SUPERFAMILY SSF52313 6 231 4.97E-100 T 29-03-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain CFE88_RS05165 955e2babf38abfb2f58811e1c82db547 262 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 29-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 Gene3D G3DSA:3.30.420.40 242 496 7.0E-67 T 29-03-2018 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 PIRSF PIRSF000538 3 493 4.8E-156 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 SUPERFAMILY SSF53067 246 486 1.02E-70 T 29-03-2018 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 SUPERFAMILY SSF53067 5 247 3.97E-67 T 29-03-2018 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 Gene3D G3DSA:3.30.420.40 1 241 4.9E-70 T 29-03-2018 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 253 439 5.6E-39 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 352 372 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 TIGRFAM TIGR01312 XylB: xylulokinase 7 482 4.0E-176 T 29-03-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 244 5.3E-60 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CFE88_RS11655 e21996ee33200b25ccc04377f4284967 496 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 130 142 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 Gene3D G3DSA:3.40.50.720 3 135 8.8E-24 T 29-03-2018 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 SUPERFAMILY SSF116726 133 215 5.1E-19 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 Pfam PF02080 TrkA-C domain 150 217 1.1E-13 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 Gene3D G3DSA:3.30.70.1450 136 218 6.9E-20 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 Pfam PF02254 TrkA-N domain 5 120 6.4E-30 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CFE88_RS05910 a6f9a4d4595dea056b9dfe7799f041cd 219 SUPERFAMILY SSF51735 4 133 4.8E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11765 d650162df5b160cfe4e4f54f6f7daff8 332 SUPERFAMILY SSF69572 2 316 2.88E-76 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS11765 d650162df5b160cfe4e4f54f6f7daff8 332 Pfam PF00899 ThiF family 4 240 3.9E-59 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS11765 d650162df5b160cfe4e4f54f6f7daff8 332 TIGRFAM TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF 3 206 1.6E-84 T 29-03-2018 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF KEGG: 00730+2.7.7.73|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CFE88_RS11765 d650162df5b160cfe4e4f54f6f7daff8 332 Gene3D G3DSA:3.40.50.720 1 243 7.2E-62 T 29-03-2018 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 Pfam PF07687 Peptidase dimerisation domain 182 273 1.5E-4 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS04245 210e33551949868ec4da13307670fad2 383 Gene3D G3DSA:3.40.630.10 222 382 1.6E-13 T 29-03-2018 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 Gene3D G3DSA:3.40.630.10 3 208 1.7E-37 T 29-03-2018 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 SUPERFAMILY SSF55031 178 290 1.57E-16 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS04245 210e33551949868ec4da13307670fad2 383 PIRSF PIRSF005962 1 383 2.6E-115 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 SUPERFAMILY SSF53187 10 191 6.29E-69 T 29-03-2018 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 SUPERFAMILY SSF53187 292 380 6.29E-69 T 29-03-2018 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 10 366 1.3E-87 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS04245 210e33551949868ec4da13307670fad2 383 Pfam PF01546 Peptidase family M20/M25/M40 63 379 4.5E-36 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF52440 6 119 1.08E-44 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF51246 344 461 7.32E-38 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 122 327 3.7E-77 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF00289 Biotin carboxylase, N-terminal domain 8 116 4.5E-42 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.30.470.20 217 457 7.0E-92 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 10 1150 0.0 T 29-03-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF00364 Biotin-requiring enzyme 1087 1149 5.3E-18 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SMART SM00878 348 455 5.2E-51 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF02436 Conserved carboxylase domain 833 1033 5.0E-73 T 29-03-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF02785 Biotin carboxylase C-terminal domain 348 456 9.4E-33 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:2.40.50.100 1076 1153 7.1E-21 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 160 174 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.30.1490.20 131 216 3.5E-21 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF51569 529 841 5.31E-83 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.40.50.20 7 130 5.0E-49 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:1.10.10.60 949 995 1.7E-18 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF51230 1071 1150 2.09E-22 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF56059 90 332 4.95E-66 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 PIRSF PIRSF001594 3 1151 0.0 T 29-03-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.20.20.70 538 825 7.1E-67 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.10.600.10 467 537 1.0E-17 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 292 299 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Pfam PF00682 HMGL-like 537 810 3.4E-26 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 Gene3D G3DSA:3.10.600.10 996 1066 6.3E-19 T 29-03-2018 CFE88_RS05770 bf76ea6211d4115c2c964774143b9c72 1153 SUPERFAMILY SSF89000 838 1015 4.32E-56 T 29-03-2018 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 Gene3D G3DSA:3.20.70.20 72 692 3.2E-149 T 29-03-2018 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 93 164 9.3E-15 T 29-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 10 701 0.0 T 29-03-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 Pfam PF08343 Ribonucleotide reductase N-terminal 11 90 6.1E-20 T 29-03-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 488 511 2.8E-28 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 377 388 2.8E-28 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 460 482 2.8E-28 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 244 263 2.8E-28 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 570 597 2.8E-28 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 SUPERFAMILY SSF51998 168 688 1.28E-170 T 29-03-2018 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 559 581 - T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 SUPERFAMILY SSF48168 10 167 3.92E-42 T 29-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 Pfam PF02867 Ribonucleotide reductase, barrel domain 169 685 3.1E-135 T 29-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS07535 45da30d504de6c1b0cdad1b043bc5587 701 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 95 688 5.0E-163 T 29-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 Pfam PF00248 Aldo/keto reductase family 16 307 2.0E-76 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 Gene3D G3DSA:3.20.20.100 2 312 4.7E-95 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 PRINTS PR00069 Aldo-keto reductase signature 241 265 2.1E-20 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 PRINTS PR00069 Aldo-keto reductase signature 45 69 2.1E-20 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 PRINTS PR00069 Aldo-keto reductase signature 111 129 2.1E-20 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 PRINTS PR00069 Aldo-keto reductase signature 142 159 2.1E-20 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 SUPERFAMILY SSF51430 4 308 2.62E-92 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS08265 52f78be02ba74165ab38316f69eeeba0 312 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 142 159 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 SMART SM00345 11 70 4.4E-14 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 SUPERFAMILY SSF46785 4 80 1.46E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 Gene3D G3DSA:1.10.10.10 2 72 1.8E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 Gene3D G3DSA:3.90.1150.10 360 452 1.0E-8 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 70 1.1E-13 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 Gene3D G3DSA:3.40.640.10 114 359 2.2E-25 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 SUPERFAMILY SSF53383 64 449 9.06E-63 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08695 5b366b52cfffd3261b1a3fc7ea11f067 454 Pfam PF00155 Aminotransferase class I and II 133 374 1.8E-14 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CFE88_RS11725 aa8e06870d7b95d4d3cc5de987fc5f8a 93 Gene3D G3DSA:3.40.630.30 1 92 3.2E-17 T 29-03-2018 CFE88_RS11725 aa8e06870d7b95d4d3cc5de987fc5f8a 93 Pfam PF14542 GCN5-related N-acetyl-transferase 11 90 6.0E-24 T 29-03-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase CFE88_RS11725 aa8e06870d7b95d4d3cc5de987fc5f8a 93 SUPERFAMILY SSF55729 4 91 1.51E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 Gene3D G3DSA:3.30.70.1350 226 308 4.6E-14 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 27 306 4.1E-93 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 SUPERFAMILY SSF160240 228 303 1.02E-9 T 29-03-2018 CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 SUPERFAMILY SSF161111 27 225 4.18E-59 T 29-03-2018 CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 Gene3D G3DSA:1.20.1510.10 26 224 8.7E-61 T 29-03-2018 CFE88_RS01030 1bdb1973b0e3270003dcfe9c3903798e 323 Pfam PF01545 Cation efflux family 31 224 2.8E-52 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 Pfam PF00625 Guanylate kinase 8 187 3.3E-52 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 41 58 - T 29-03-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 Hamap MF_00328 Guanylate kinase [gmk]. 4 188 37.134 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 Gene3D G3DSA:3.40.50.300 1 52 4.3E-11 T 29-03-2018 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 SMART SM00072 5 188 1.3E-70 T 29-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 6 185 1.1E-72 T 29-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 Gene3D G3DSA:3.40.50.300 83 189 1.2E-35 T 29-03-2018 CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 SUPERFAMILY SSF52540 3 191 2.09E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05395 ae7a70fa74e3459ff65623a705c2d086 207 Gene3D G3DSA:3.30.63.10 53 82 4.6E-24 T 29-03-2018 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 Pfam PF00480 ROK family 7 319 1.5E-66 T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 ProSitePatterns PS01125 ROK family signature. 140 167 - T 29-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 6 326 1.8E-152 T 29-03-2018 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 Gene3D G3DSA:3.30.420.40 126 327 7.1E-53 T 29-03-2018 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 SUPERFAMILY SSF53067 4 317 1.87E-65 T 29-03-2018 CFE88_RS03520 a097cbf8ea15794cb8d65054d93500ff 328 Gene3D G3DSA:3.30.420.40 1 125 1.9E-27 T 29-03-2018 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 PRINTS PR00110 Alpha-amylase signature 194 205 1.8E-5 T 29-03-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 PRINTS PR00110 Alpha-amylase signature 316 328 1.8E-5 T 29-03-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 PRINTS PR00110 Alpha-amylase signature 92 103 1.8E-5 T 29-03-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 SUPERFAMILY SSF51011 476 549 9.97E-15 T 29-03-2018 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 Gene3D G3DSA:2.60.40.1180 477 551 2.8E-13 T 29-03-2018 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 SMART SM00642 13 415 5.8E-154 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 Gene3D G3DSA:3.20.20.80 2 476 1.6E-121 T 29-03-2018 CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 SUPERFAMILY SSF51445 3 469 1.09E-145 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 Pfam PF16657 Maltogenic Amylase, C-terminal domain 476 518 1.2E-8 T 29-03-2018 IPR032091 Maltogenic Amylase, C-terminal CFE88_RS03730 fb748eb81e320ba119a467a6cf701b20 551 Pfam PF00128 Alpha amylase, catalytic domain 28 372 1.0E-113 T 29-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PIRSF PIRSF002133 1 137 5.5E-48 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 123 135 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 40 55 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 107 123 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 71 90 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 55 70 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 PRINTS PR01034 Ribosomal protein S12 signature 90 107 2.9E-57 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 136 6.8E-67 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 ProSitePatterns PS00055 Ribosomal protein S12 signature. 56 63 - T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 136 39.616 T 29-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 Gene3D G3DSA:2.40.50.140 1 137 1.7E-62 T 29-03-2018 CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 SUPERFAMILY SSF50249 2 136 2.91E-47 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08545 a132cf73859ab0444ba8ba89dce8ec44 137 Pfam PF00164 Ribosomal protein S12/S23 32 136 2.8E-36 T 29-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 SUPERFAMILY SSF52540 39 278 1.07E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 Gene3D G3DSA:3.40.50.300 29 289 4.7E-59 T 29-03-2018 CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 SMART SM00382 69 262 3.9E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 ProSitePatterns PS00211 ABC transporters family signature. 188 202 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 45 291 7.7E-126 T 29-03-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 CFE88_RS04300 290f3dccf656417c2bec42b77b84a8d2 291 Pfam PF00005 ABC transporter 60 216 8.6E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS11455 afc0281d00fa83a38e28c3ddad80f5cd 235 Gene3D G3DSA:1.10.530.10 148 235 7.6E-15 T 29-03-2018 CFE88_RS11455 afc0281d00fa83a38e28c3ddad80f5cd 235 SUPERFAMILY SSF53955 164 223 1.6E-9 T 29-03-2018 IPR023346 Lysozyme-like domain CFE88_RS11455 afc0281d00fa83a38e28c3ddad80f5cd 235 Pfam PF06737 Transglycosylase-like domain 175 234 1.5E-4 T 29-03-2018 IPR010618 Transglycosylase-like CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 Gene3D G3DSA:1.10.8.280 63 173 9.3E-16 T 29-03-2018 CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 Pfam PF00005 ABC transporter 383 588 8.6E-11 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 SUPERFAMILY SSF52540 381 641 4.21E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 Gene3D G3DSA:3.40.50.300 179 367 3.8E-36 T 29-03-2018 CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 Gene3D G3DSA:1.20.1580.10 9 43 3.5E-7 T 29-03-2018 CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 Gene3D G3DSA:3.40.50.300 372 670 1.7E-46 T 29-03-2018 CFE88_RS06420 fd32bee2c87d922e33a52abce211299a 670 SUPERFAMILY SSF52540 199 334 3.15E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 SUPERFAMILY SSF52317 143 358 1.01E-57 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 SUPERFAMILY SSF52021 4 146 3.53E-54 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 285 296 4.4E-36 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 213 227 4.4E-36 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 243 259 4.4E-36 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 174 188 4.4E-36 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 260 277 4.4E-36 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 Pfam PF00117 Glutamine amidotransferase class-I 176 352 1.4E-47 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00097 Anthranilate synthase component II signature 243 254 3.5E-6 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00097 Anthranilate synthase component II signature 216 225 3.5E-6 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00097 Anthranilate synthase component II signature 329 342 3.5E-6 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 SMART SM01097 3 133 4.1E-79 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 Gene3D G3DSA:3.40.50.880 142 359 1.1E-52 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 358 49.241 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 130 5.6E-50 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 243 254 1.8E-11 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 216 225 1.8E-11 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 329 342 1.8E-11 T 29-03-2018 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 Gene3D G3DSA:3.50.30.20 2 141 5.0E-56 T 29-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05430 5401c2fbea50210812a4b6d06b186ed8 366 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 6 355 1.8E-147 T 29-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 SMART SM00278 12 31 0.0049 T 29-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 Gene3D G3DSA:3.40.1360.10 77 170 2.3E-39 T 29-03-2018 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 SUPERFAMILY SSF111304 1 198 2.75E-78 T 29-03-2018 IPR023627 Recombination protein RecR CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 29-03-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 Pfam PF02132 RecR protein 40 78 3.2E-16 T 29-03-2018 IPR023628 Recombination protein RecR, C4-type zinc finger CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 SMART SM00493 80 165 1.3E-13 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 109.524 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 Gene3D G3DSA:1.10.150.20 8 38 0.0011 T 29-03-2018 CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 Pfam PF13662 Toprim domain 80 171 3.1E-26 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS08985 fb9efb479345825a5f0e43d4e2729164 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 196 2.7E-88 T 29-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CFE88_RS11990 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF02371 Transposase IS116/IS110/IS902 family 267 344 2.2E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CFE88_RS11990 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF01548 Transposase 4 155 3.5E-15 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CFE88_RS05895 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF02371 Transposase IS116/IS110/IS902 family 267 344 2.2E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CFE88_RS05895 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF01548 Transposase 4 155 3.5E-15 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CFE88_RS06385 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF02371 Transposase IS116/IS110/IS902 family 267 344 2.2E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CFE88_RS06385 e20bf51184eb8ea0a33ef50445e436ad 399 Pfam PF01548 Transposase 4 155 3.5E-15 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 SUPERFAMILY SSF53850 90 293 7.72E-38 T 29-03-2018 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 Gene3D G3DSA:3.40.190.10 177 265 5.6E-19 T 29-03-2018 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 Gene3D G3DSA:1.10.10.10 1 83 8.2E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.5E-18 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 Gene3D G3DSA:3.40.190.10 87 176 8.4E-18 T 29-03-2018 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 SUPERFAMILY SSF46785 1 84 4.95E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11555 f3dc184814de7368c2402ebf879b97bd 294 Pfam PF03466 LysR substrate binding domain 89 291 2.8E-41 T 29-03-2018 IPR005119 LysR, substrate-binding CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 1 430 41.951 T 29-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 385 399 5.8E-16 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 180 192 5.8E-16 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 209 5.8E-16 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 345 361 5.8E-16 T 29-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 Pfam PF00152 tRNA synthetases class II (D, K and N) 111 424 1.7E-83 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 Gene3D G3DSA:2.40.50.140 1 100 4.1E-21 T 29-03-2018 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 Pfam PF01336 OB-fold nucleic acid binding domain 16 95 1.4E-15 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 SUPERFAMILY SSF55681 110 424 1.56E-96 T 29-03-2018 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 Gene3D G3DSA:3.30.930.10 101 430 2.6E-93 T 29-03-2018 CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 SUPERFAMILY SSF50249 9 102 2.57E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03955 28f15a3536225bbe93463d5a3e9568ed 430 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 2 429 3.9E-166 T 29-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CFE88_RS09755 cef9972283f74214bc81b01f858afa63 322 Gene3D G3DSA:3.40.50.1820 15 317 4.2E-27 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09755 cef9972283f74214bc81b01f858afa63 322 PIRSF PIRSF000443 1 322 7.9E-80 T 29-03-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 CFE88_RS09755 cef9972283f74214bc81b01f858afa63 322 Pfam PF00561 alpha/beta hydrolase fold 38 302 2.7E-13 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS09755 cef9972283f74214bc81b01f858afa63 322 SUPERFAMILY SSF53474 6 315 4.61E-59 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 SMART SM00796 1 217 2.2E-66 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 SUPERFAMILY SSF50891 104 233 1.1E-33 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 SUPERFAMILY SSF160467 2 107 1.96E-10 T 29-03-2018 CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 Gene3D G3DSA:2.40.100.10 116 235 1.3E-32 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 217 5.2E-41 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS07620 3ac5bd7679486db08d580c977618d3fd 243 Gene3D G3DSA:3.30.1360.40 1 115 1.9E-6 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS09385 b648730b89eca9e62368794485682066 196 Gene3D G3DSA:3.40.50.1240 1 195 5.5E-43 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS09385 b648730b89eca9e62368794485682066 196 SMART SM00855 2 165 6.6E-17 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS09385 b648730b89eca9e62368794485682066 196 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 185 1.1E-38 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS09385 b648730b89eca9e62368794485682066 196 SUPERFAMILY SSF53254 1 191 3.27E-45 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS09385 b648730b89eca9e62368794485682066 196 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 29-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 CFE88_RS09385 b648730b89eca9e62368794485682066 196 PIRSF PIRSF000709 1 183 5.1E-25 T 29-03-2018 CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 SUPERFAMILY SSF69754 4 112 2.75E-31 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 Gene3D G3DSA:3.30.160.100 2 100 9.1E-29 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 129 184 1.8E-27 T 29-03-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 5 96 8.6E-27 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 2 188 25.286 T 29-03-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid CFE88_RS07425 d006aa280d64394c358a7bfd1b1591cc 189 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 4 102 2.6E-30 T 29-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 Gene3D G3DSA:3.40.190.10 108 169 1.0E-22 T 29-03-2018 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 202 45.665 T 29-03-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 177 4.7E-53 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 SUPERFAMILY SSF53850 1 197 9.55E-53 T 29-03-2018 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 Gene3D G3DSA:3.40.190.10 1 107 2.0E-26 T 29-03-2018 CFE88_RS10635 0ddc2a6f8d922b89c8c3b4c7f9d1f629 204 Pfam PF01634 ATP phosphoribosyltransferase 53 197 4.2E-45 T 29-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 SMART SM00363 353 415 2.2E-6 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 SUPERFAMILY SSF55174 322 419 3.79E-23 T 29-03-2018 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 SUPERFAMILY SSF52374 3 324 2.88E-110 T 29-03-2018 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Pfam PF01479 S4 domain 362 400 3.3E-7 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Gene3D G3DSA:3.10.290.10 326 421 1.9E-22 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Pfam PF00579 tRNA synthetases class I (W and Y) 30 324 3.6E-85 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Gene3D G3DSA:3.40.50.620 4 224 4.0E-69 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 1.7E-30 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 1.7E-30 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 183 205 1.7E-30 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 162 177 1.7E-30 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 419 1.7E-133 T 29-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 3 419 45.478 T 29-03-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 CFE88_RS02675 acb36b9526e4bd32145e0e3614967ed6 421 Gene3D G3DSA:1.10.240.10 225 325 9.2E-37 T 29-03-2018 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 SUPERFAMILY SSF101353 246 457 5.36E-66 T 29-03-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 856 0.0 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Pfam PF01411 tRNA synthetases class II (A) 8 556 1.7E-205 T 29-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Pfam PF02272 DHHA1 domain 734 873 3.9E-31 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 SUPERFAMILY SSF50447 455 553 1.45E-14 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 SUPERFAMILY SSF55681 4 245 1.22E-87 T 29-03-2018 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 654 697 6.5E-17 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 4.4E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 4.4E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 4.4E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 4.4E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 4.4E-31 T 29-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 SUPERFAMILY SSF55186 553 708 6.8E-52 T 29-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Gene3D G3DSA:3.30.980.10 554 714 1.2E-44 T 29-03-2018 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 SMART SM00863 654 697 3.3E-20 T 29-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Gene3D G3DSA:3.30.930.10 3 242 4.3E-95 T 29-03-2018 CFE88_RS03180 cc2187dc462ededeae3c1a036cea3203 876 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 876 177.269 T 29-03-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 Gene3D G3DSA:3.40.250.10 107 306 3.6E-26 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 Pfam PF00581 Rhodanese-like domain 114 208 1.2E-11 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 Pfam PF12368 Rhodanase C-terminal 220 285 7.1E-16 T 29-03-2018 IPR022111 Rhodanase, C-terminal CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 SMART SM00450 113 214 2.7E-18 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 SUPERFAMILY SSF52821 86 244 8.12E-34 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10585 a38594e4d8acfd2b69fc88a553e4e61e 320 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 265 39.203 T 29-03-2018 IPR020936 Uncharacterised protein family UPF0176 CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 2.0E-39 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.0E-28 T 29-03-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 SUPERFAMILY SSF50249 1 71 4.93E-29 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 28.221 T 29-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 SMART SM00316 4 72 8.5E-7 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS00725 39c96d3fe2b878dd71928df6ea73e966 72 Gene3D G3DSA:2.40.50.140 1 72 1.6E-37 T 29-03-2018 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 PIRSF PIRSF001413 2 400 1.0E-161 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 6 394 50.473 T 29-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 85 99 - T 29-03-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 11 393 1.5E-192 T 29-03-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 SUPERFAMILY SSF53686 10 391 1.83E-139 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 57 381 5.6E-41 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 Gene3D G3DSA:3.40.50.1100 13 201 5.2E-42 T 29-03-2018 CFE88_RS04375 5eae4366e5a757a1a975f811cfa150a3 411 Gene3D G3DSA:3.40.50.1100 202 405 2.2E-38 T 29-03-2018 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 312 1.3E-61 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Gene3D G3DSA:3.30.1490.20 123 208 3.9E-23 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Gene3D G3DSA:3.40.50.20 1 122 1.0E-50 T 29-03-2018 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 SMART SM00878 334 443 5.5E-52 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Gene3D G3DSA:3.30.470.20 209 446 7.1E-82 T 29-03-2018 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 SUPERFAMILY SSF52440 3 112 7.91E-45 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 SUPERFAMILY SSF56059 82 347 2.47E-63 T 29-03-2018 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 SUPERFAMILY SSF51246 329 445 1.05E-36 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Pfam PF02785 Biotin carboxylase C-terminal domain 334 443 3.8E-36 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS03240 f1c5dc8347016da490916a1f6d55b253 452 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 109 4.0E-43 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS08495 9fc83da3d0619134e2d58447dc4238ee 238 Gene3D G3DSA:3.90.550.10 1 237 7.8E-42 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08495 9fc83da3d0619134e2d58447dc4238ee 238 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 107 114 - T 29-03-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CFE88_RS08495 9fc83da3d0619134e2d58447dc4238ee 238 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 232 2.5E-46 T 29-03-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CFE88_RS08495 9fc83da3d0619134e2d58447dc4238ee 238 Hamap MF_02068 Ribitol-5-phosphate cytidylyltransferase [tarI]. 1 234 43.616 T 29-03-2018 IPR034709 Ribitol-5-phosphate cytidylyltransferase GO:0047349 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CFE88_RS08495 9fc83da3d0619134e2d58447dc4238ee 238 SUPERFAMILY SSF53448 1 231 5.41E-52 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 PIRSF PIRSF002070 1 128 2.4E-30 T 29-03-2018 CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 SUPERFAMILY SSF50249 1 119 6.85E-28 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 Pfam PF00436 Single-strand binding protein family 2 101 1.5E-23 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 Gene3D G3DSA:2.40.50.140 1 109 1.4E-26 T 29-03-2018 CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 120 1.5E-22 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CFE88_RS01290 1da130e6109391520ddba539aa3285ef 131 Hamap MF_00984 Single-stranded DNA-binding protein. 2 105 27.194 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 214 37.953 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 SMART SM00987 44 203 2.1E-36 T 29-03-2018 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 SUPERFAMILY SSF52141 2 213 5.67E-86 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 52 61 - T 29-03-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 SMART SM00986 44 203 2.1E-36 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 2 207 8.5E-79 T 29-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 Pfam PF03167 Uracil DNA glycosylase superfamily 48 202 2.0E-24 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS08340 83685b0fe894a0aaa5101f9a88d238f0 216 Gene3D G3DSA:3.40.470.10 1 216 1.6E-93 T 29-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CFE88_RS12410 644e789a29db32ae643d875982251da4 112 SUPERFAMILY SSF50118 2 108 4.8E-22 T 29-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS12410 644e789a29db32ae643d875982251da4 112 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 106 1.6E-17 T 29-03-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CFE88_RS12410 644e789a29db32ae643d875982251da4 112 Gene3D G3DSA:2.30.30.110 1 111 2.4E-18 T 29-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS08505 65aa72d3415342719b2d0e1cde3d5b30 318 Gene3D G3DSA:3.40.50.720 1 318 4.0E-30 T 29-03-2018 CFE88_RS08505 65aa72d3415342719b2d0e1cde3d5b30 318 SUPERFAMILY SSF51735 1 314 6.2E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS08505 65aa72d3415342719b2d0e1cde3d5b30 318 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 231 3.1E-22 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CFE88_RS11595 a0f276e061a2b1498e3c6e94adc065eb 108 Pfam PF00085 Thioredoxin 9 87 7.9E-6 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 CFE88_RS11595 a0f276e061a2b1498e3c6e94adc065eb 108 SUPERFAMILY SSF52833 2 100 2.45E-18 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS11595 a0f276e061a2b1498e3c6e94adc065eb 108 Gene3D G3DSA:3.40.30.10 1 105 4.6E-11 T 29-03-2018 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Gene3D G3DSA:1.10.601.10 4 204 1.2E-75 T 29-03-2018 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Pfam PF00140 Sigma-70 factor, region 1.2 97 129 4.8E-18 T 29-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Gene3D G3DSA:1.10.10.10 205 255 8.9E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Pfam PF04539 Sigma-70 region 3 214 290 2.1E-31 T 29-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 SUPERFAMILY SSF88659 208 281 5.79E-22 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 159 172 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 13 368 33.771 T 29-03-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 PRINTS PR00046 Major sigma-70 factor signature 307 319 2.9E-32 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 PRINTS PR00046 Major sigma-70 factor signature 343 354 2.9E-32 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 PRINTS PR00046 Major sigma-70 factor signature 328 343 2.9E-32 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 PRINTS PR00046 Major sigma-70 factor signature 159 172 2.9E-32 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 PRINTS PR00046 Major sigma-70 factor signature 183 191 2.9E-32 T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Pfam PF04545 Sigma-70, region 4 303 356 5.0E-20 T 29-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 SUPERFAMILY SSF88946 96 205 2.62E-53 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 SUPERFAMILY SSF88659 265 366 4.49E-30 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 131 367 5.8E-124 T 29-03-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 328 354 - T 29-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 133 356 6.9E-39 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Pfam PF04542 Sigma-70 region 2 135 204 4.2E-22 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Pfam PF03979 Sigma-70 factor, region 1.1 24 80 1.4E-15 T 29-03-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 CFE88_RS03445 35538fb21e04a2a4d9ef684aa94b43ac 368 Gene3D G3DSA:1.10.10.10 297 368 4.4E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 481 553 1.8E-10 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 Pfam PF02378 Phosphotransferase system, EIIC 28 348 1.4E-70 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 13 421 5.0E-76 T 29-03-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 SUPERFAMILY SSF52794 480 581 1.02E-18 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 Gene3D G3DSA:3.40.50.2300 474 581 4.5E-20 T 29-03-2018 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 423 575 2.1E-52 T 29-03-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 CFE88_RS00820 2a5312c50b762b7459c51b95c1fed1c6 582 TIGRFAM TIGR00394 lac_pts_IIC: PTS system, lactose-specific IIC component 11 421 2.7E-219 T 29-03-2018 IPR004801 Phosphotransferase system, lactose-specific IIC component GO:0008982|GO:0016021|GO:0022869 KEGG: 00052+2.7.1.207|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 335 1.2E-32 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 Pfam PF00586 AIR synthase related protein, N-terminal domain 57 161 1.5E-16 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 3 340 44.853 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 SUPERFAMILY SSF56042 168 337 2.39E-58 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 Gene3D G3DSA:3.90.650.10 168 340 8.4E-61 T 29-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 SUPERFAMILY SSF55326 4 166 4.34E-49 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 Gene3D G3DSA:3.30.1330.10 28 158 1.8E-52 T 29-03-2018 IPR016188 PurM-like, N-terminal domain CFE88_RS05995 127889a56d2fda4f1cb801191d9f9b2b 343 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 4 331 1.4E-129 T 29-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 Gene3D G3DSA:3.40.1190.20 3 277 4.9E-40 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 Pfam PF01256 Carbohydrate kinase 31 269 4.0E-58 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 7 274 1.4E-55 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 97 107 - T 29-03-2018 IPR017953 Carbohydrate kinase, predicted, conserved site CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 SUPERFAMILY SSF53613 6 275 3.78E-62 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 214 224 - T 29-03-2018 IPR017953 Carbohydrate kinase, predicted, conserved site CFE88_RS09730 19ba5458104c3569a68790f4befa2f6e 277 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 7 277 22.818 T 29-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 SUPERFAMILY SSF100950 7 151 1.55E-38 T 29-03-2018 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 53 222 2.8E-59 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 Gene3D G3DSA:3.30.70.260 143 206 1.6E-17 T 29-03-2018 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 4 226 29.436 T 29-03-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 Gene3D G3DSA:3.40.50.1360 5 142 5.2E-37 T 29-03-2018 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 8 224 1.2E-76 T 29-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS00195 2e4a24087394be0510dc724986c8aeab 230 SUPERFAMILY SSF75445 133 209 2.62E-18 T 29-03-2018 CFE88_RS00050 2c47495352d3eddd8e328a3d53828a53 385 Gene3D G3DSA:3.40.50.2000 7 216 8.4E-9 T 29-03-2018 CFE88_RS00050 2c47495352d3eddd8e328a3d53828a53 385 SUPERFAMILY SSF53756 10 384 7.63E-50 T 29-03-2018 CFE88_RS00050 2c47495352d3eddd8e328a3d53828a53 385 Gene3D G3DSA:3.40.50.2000 217 379 6.9E-29 T 29-03-2018 CFE88_RS00050 2c47495352d3eddd8e328a3d53828a53 385 Pfam PF00534 Glycosyl transferases group 1 206 365 9.4E-29 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 SUPERFAMILY SSF51366 19 267 2.35E-71 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 Gene3D G3DSA:3.20.20.70 19 272 1.0E-73 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 PIRSF PIRSF029271 2 295 7.5E-152 T 29-03-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 5 295 52.743 T 29-03-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 10 295 1.3E-152 T 29-03-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 ProSitePatterns PS01235 PdxS/SNZ family signature. 206 224 - T 29-03-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08690 3e1187d1713c56a90b91a22bdede0551 295 Pfam PF01680 SOR/SNZ family 9 213 6.1E-107 T 29-03-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS10920 7288da13995272e07f76896a83074056 97 Pfam PF06013 Proteins of 100 residues with WXG 4 88 5.2E-22 T 29-03-2018 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10920 7288da13995272e07f76896a83074056 97 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 3 90 5.0E-23 T 29-03-2018 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10920 7288da13995272e07f76896a83074056 97 SUPERFAMILY SSF140453 3 95 1.23E-20 T 29-03-2018 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10920 7288da13995272e07f76896a83074056 97 Gene3D G3DSA:1.10.287.1060 1 96 1.1E-19 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 PIRSF PIRSF000853 1 875 0.0 T 29-03-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CFE88_RS11305 11741a065e87e65da108555a06356295 875 SUPERFAMILY SSF56059 1 378 3.53E-140 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:1.10.189.10 341 389 3.9E-19 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:3.30.1490.20 2 116 2.7E-30 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS11305 11741a065e87e65da108555a06356295 875 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 760 778 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 SUPERFAMILY SSF51621 512 869 2.04E-117 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:3.20.20.60 535 873 1.5E-101 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:3.50.30.10 393 534 5.9E-40 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 869 0.0 T 29-03-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CFE88_RS11305 11741a065e87e65da108555a06356295 875 SUPERFAMILY SSF52009 395 512 4.84E-33 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 450 461 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:1.20.80.30 117 197 1.2E-29 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 517 868 2.8E-80 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Gene3D G3DSA:3.30.470.20 243 340 3.8E-22 T 29-03-2018 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Pfam PF00391 PEP-utilising enzyme, mobile domain 423 503 9.0E-26 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 302 355 8.5E-12 T 29-03-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CFE88_RS11305 11741a065e87e65da108555a06356295 875 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 297 7.2E-44 T 29-03-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 SMART SM00387 344 456 1.8E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 SUPERFAMILY SSF47384 216 296 7.06E-17 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 SUPERFAMILY SSF158472 180 230 1.31E-5 T 29-03-2018 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 SUPERFAMILY SSF55874 290 454 3.8E-37 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 SMART SM00388 233 300 1.9E-15 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 Gene3D G3DSA:1.10.287.130 223 285 1.8E-15 T 29-03-2018 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 296 1.2E-13 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 Gene3D G3DSA:3.30.565.10 286 456 3.9E-33 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 454 2.3E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 2.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 2.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 2.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS04140 d1c1301718f9151e2e31a3b5446af56f 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 453 2.1E-14 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 PIRSF PIRSF002070 1 158 4.3E-38 T 29-03-2018 CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 SUPERFAMILY SSF50249 1 169 3.36E-56 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 169 1.8E-48 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 Gene3D G3DSA:2.40.50.140 1 122 7.7E-41 T 29-03-2018 CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 35.882 T 29-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CFE88_RS09465 89c7233793fa314bff596b3c327780f9 169 Pfam PF00436 Single-strand binding protein family 2 103 4.5E-36 T 29-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 PIRSF PIRSF038945 1 351 6.8E-162 T 29-03-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 52 65 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 Gene3D G3DSA:3.40.50.1100 147 336 9.1E-48 T 29-03-2018 CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 319 4.0E-77 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 TIGRFAM TIGR00260 thrC: threonine synthase 10 326 1.3E-105 T 29-03-2018 IPR004450 Threonine synthase-like CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 SUPERFAMILY SSF53686 8 352 1.14E-105 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS04580 77785337edeb49c9e736c5830a9d20cc 354 Gene3D G3DSA:3.40.50.1100 39 146 3.0E-29 T 29-03-2018 CFE88_RS03040 1fd703821d6ee14e7a7fabd2a726294e 106 SUPERFAMILY SSF118010 1 106 6.02E-33 T 29-03-2018 IPR007422 Cysteine protease Prp CFE88_RS03040 1fd703821d6ee14e7a7fabd2a726294e 106 Pfam PF04327 Cysteine protease Prp 1 102 4.0E-24 T 29-03-2018 IPR007422 Cysteine protease Prp CFE88_RS03040 1fd703821d6ee14e7a7fabd2a726294e 106 Gene3D G3DSA:3.30.70.1490 1 106 8.6E-29 T 29-03-2018 IPR007422 Cysteine protease Prp CFE88_RS06725 65a564ce39eb1bab6e64f9955b8f2464 349 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 96 339 2.1E-48 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CFE88_RS06725 65a564ce39eb1bab6e64f9955b8f2464 349 SUPERFAMILY SSF51695 90 343 2.56E-68 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS06725 65a564ce39eb1bab6e64f9955b8f2464 349 Gene3D G3DSA:3.20.20.190 68 349 3.3E-77 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 34 413 2.9E-101 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 484 728 5.6E-71 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 427 30.406 T 29-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Pfam PF07549 SecD/SecF GG Motif 477 502 1.0E-4 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Pfam PF07549 SecD/SecF GG Motif 32 49 0.037 T 29-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 490 725 2.6E-50 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 178 406 5.9E-53 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Pfam PF02355 Protein export membrane protein 245 416 1.5E-14 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Pfam PF02355 Protein export membrane protein 559 737 9.3E-64 T 29-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Gene3D G3DSA:1.20.1640.10 497 749 5.2E-35 T 29-03-2018 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 SUPERFAMILY SSF82866 223 417 5.89E-38 T 29-03-2018 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 PRINTS PR01755 Bacterial translocase SecF protein signature 482 497 1.3E-25 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 PRINTS PR01755 Bacterial translocase SecF protein signature 640 658 1.3E-25 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 PRINTS PR01755 Bacterial translocase SecF protein signature 676 691 1.3E-25 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 PRINTS PR01755 Bacterial translocase SecF protein signature 592 606 1.3E-25 T 29-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 455 739 26.242 T 29-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 Gene3D G3DSA:1.20.1640.10 205 418 2.4E-29 T 29-03-2018 CFE88_RS03085 2aa27711006aaa5fe8fd5771772f2e24 763 SUPERFAMILY SSF82866 561 741 6.28E-38 T 29-03-2018 CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 Gene3D G3DSA:3.40.50.720 1 233 3.6E-50 T 29-03-2018 CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 SUPERFAMILY SSF51735 2 234 8.68E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 7.8E-28 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 9.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 9.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 9.2E-6 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05045 bb4ff514e9f074d41e7d7181580343d9 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 232 4.2E-39 T 29-03-2018 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 SUPERFAMILY SSF81464 14 110 4.41E-22 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 27 102 2.4E-11 T 29-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 PIRSF PIRSF000292 1 301 4.0E-107 T 29-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 Gene3D G3DSA:1.10.287.90 20 108 3.2E-23 T 29-03-2018 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 TIGRFAM TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II 8 230 4.6E-125 T 29-03-2018 IPR006332 Quinol oxidase subunit II GO:0009486|GO:0016021|GO:0016682|GO:0055114 CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 Gene3D G3DSA:2.60.40.420 109 270 8.7E-39 T 29-03-2018 IPR008972 Cupredoxin CFE88_RS06045 896a30a9aecd870d1a6b25bbd95d7ccc 374 SUPERFAMILY SSF49503 112 248 1.4E-40 T 29-03-2018 IPR008972 Cupredoxin CFE88_RS03710 e231b99d52bde797d1225410f6579d06 145 Pfam PF06491 Disulphide isomerase 8 142 1.7E-60 T 29-03-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS03710 e231b99d52bde797d1225410f6579d06 145 Gene3D G3DSA:3.40.30.10 15 144 3.2E-4 T 29-03-2018 CFE88_RS03710 e231b99d52bde797d1225410f6579d06 145 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 142 4.5E-61 T 29-03-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS08945 3e7b6adb75e5e241fd18371003d6745f 308 SUPERFAMILY SSF52540 9 161 1.88E-31 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08945 3e7b6adb75e5e241fd18371003d6745f 308 Gene3D G3DSA:1.20.272.10 190 306 1.2E-17 T 29-03-2018 CFE88_RS08945 3e7b6adb75e5e241fd18371003d6745f 308 Pfam PF13177 DNA polymerase III, delta subunit 4 150 1.6E-45 T 29-03-2018 CFE88_RS08945 3e7b6adb75e5e241fd18371003d6745f 308 Gene3D G3DSA:3.40.50.300 2 148 1.4E-28 T 29-03-2018 CFE88_RS08945 3e7b6adb75e5e241fd18371003d6745f 308 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 216 304 1.7E-4 T 29-03-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 SUPERFAMILY SSF53850 1 181 5.21E-49 T 29-03-2018 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 Gene3D G3DSA:3.40.190.10 1 89 5.3E-23 T 29-03-2018 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 Gene3D G3DSA:3.30.70.260 178 267 5.3E-17 T 29-03-2018 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 Gene3D G3DSA:3.40.190.10 90 164 4.4E-11 T 29-03-2018 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 SUPERFAMILY SSF55021 170 266 3.1E-21 T 29-03-2018 CFE88_RS01760 5a0649ce95b648f979ce08f313370a8d 267 Pfam PF00800 Prephenate dehydratase 4 176 2.6E-40 T 29-03-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CFE88_RS06460 39008072384e9cc0545776ccd18ffe3f 223 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 17 215 2.3E-47 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06460 39008072384e9cc0545776ccd18ffe3f 223 Pfam PF04276 Protein of unknown function (DUF443) 22 215 1.2E-37 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS11405 658af7f6ba2bff360b478e49c8b94130 336 Gene3D G3DSA:2.130.10.10 23 290 8.2E-6 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CFE88_RS11405 658af7f6ba2bff360b478e49c8b94130 336 Pfam PF13248 zinc-ribbon domain 2 24 8.8E-8 T 29-03-2018 CFE88_RS11405 658af7f6ba2bff360b478e49c8b94130 336 Gene3D G3DSA:2.20.28.20 2 22 5.4E-5 T 29-03-2018 CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 Pfam PF01546 Peptidase family M20/M25/M40 74 406 6.2E-30 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 Gene3D G3DSA:3.30.70.360 188 314 6.5E-19 T 29-03-2018 CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 Pfam PF07687 Peptidase dimerisation domain 177 298 1.3E-24 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 SUPERFAMILY SSF55031 203 297 2.24E-9 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 11 400 3.7E-96 T 29-03-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 SUPERFAMILY SSF53187 8 186 8.12E-53 T 29-03-2018 CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 SUPERFAMILY SSF53187 326 408 8.12E-53 T 29-03-2018 CFE88_RS11905 44aed0a5753d53d1e9b67e72f73722ac 418 Gene3D G3DSA:3.40.630.10 3 187 1.4E-30 T 29-03-2018 CFE88_RS03995 bc105428a73bebdb333ba37c31a2cf62 112 Pfam PF05103 DivIVA protein 8 70 1.1E-11 T 29-03-2018 IPR007793 DivIVA family CFE88_RS03995 bc105428a73bebdb333ba37c31a2cf62 112 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 8 42 1.6E-14 T 29-03-2018 IPR019933 DivIVA domain CFE88_RS03995 bc105428a73bebdb333ba37c31a2cf62 112 PIRSF PIRSF029938 1 112 3.9E-42 T 29-03-2018 IPR011229 Cell cycle protein GpsB CFE88_RS03995 bc105428a73bebdb333ba37c31a2cf62 112 Gene3D G3DSA:1.20.5.170 16 76 1.2E-4 T 29-03-2018 CFE88_RS03995 bc105428a73bebdb333ba37c31a2cf62 112 Hamap MF_02011 Cell cycle protein GpsB [gpsB]. 1 112 22.765 T 29-03-2018 IPR011229 Cell cycle protein GpsB CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 SUPERFAMILY SSF56059 82 350 1.94E-71 T 29-03-2018 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 3.1E-37 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Gene3D G3DSA:3.30.470.20 203 445 5.3E-99 T 29-03-2018 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Gene3D G3DSA:3.40.50.20 1 127 1.0E-47 T 29-03-2018 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.6E-218 T 29-03-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Gene3D G3DSA:3.30.1490.20 128 200 6.2E-20 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 4.0E-42 T 29-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 3.6E-82 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 SUPERFAMILY SSF51246 331 444 2.98E-43 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 SUPERFAMILY SSF52440 1 112 3.67E-46 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS03650 ea8699cc5d5e558bec0b78e026ec8d08 452 SMART SM00878 336 442 9.7E-60 T 29-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CFE88_RS11025 259a16145b9eb5455999eb05d6647a69 215 Pfam PF16882 Domain of unknown function (DUF5079) 3 211 2.1E-38 T 29-03-2018 IPR031690 Protein of unknown function DUF5079 CFE88_RS10880 cb2f632aa95b7489f4edd5003a50bac9 467 PIRSF PIRSF006060 1 467 3.4E-51 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS10880 cb2f632aa95b7489f4edd5003a50bac9 467 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 465 9.4E-168 T 29-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CFE88_RS10880 cb2f632aa95b7489f4edd5003a50bac9 467 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 8 465 5.5E-182 T 29-03-2018 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 CFE88_RS10880 cb2f632aa95b7489f4edd5003a50bac9 467 Pfam PF13520 Amino acid permease 10 416 2.8E-69 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS04335 d66ea9bfb2a9f03d3041b8562947b89f 231 Pfam PF00005 ABC transporter 18 155 1.1E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04335 d66ea9bfb2a9f03d3041b8562947b89f 231 SMART SM00382 27 204 5.8E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04335 d66ea9bfb2a9f03d3041b8562947b89f 231 Gene3D G3DSA:3.40.50.300 1 231 3.9E-57 T 29-03-2018 CFE88_RS04335 d66ea9bfb2a9f03d3041b8562947b89f 231 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS04335 d66ea9bfb2a9f03d3041b8562947b89f 231 SUPERFAMILY SSF52540 2 229 2.9E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 218 243 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 102 126 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 145 169 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 178 201 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 324 346 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 398 422 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 279 303 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 PRINTS PR00758 Arsenical pump membrane protein signature 365 390 2.4E-114 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 Pfam PF02040 Arsenical pump membrane protein 4 425 3.2E-195 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS09990 d3b1b1eee83f95f8b86482c4a3aa8ea6 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 428 3.3E-233 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:3.40.50.620 433 517 1.7E-30 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 559 3.8E-214 T 29-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 810 875 1.2E-22 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 SUPERFAMILY SSF52374 341 570 1.94E-141 T 29-03-2018 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 SUPERFAMILY SSF52374 2 193 1.94E-141 T 29-03-2018 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 SUPERFAMILY SSF47323 571 825 8.97E-72 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 SUPERFAMILY SSF50677 191 342 4.71E-62 T 29-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:1.10.287.380 803 873 9.2E-27 T 29-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:3.90.740.10 190 235 1.3E-14 T 29-03-2018 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Hamap MF_02004 Valine--tRNA ligase [valS]. 3 875 15.956 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 PRINTS PR00986 Valyl-tRNA synthetase signature 346 359 4.6E-38 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 PRINTS PR00986 Valyl-tRNA synthetase signature 37 48 4.6E-38 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 PRINTS PR00986 Valyl-tRNA synthetase signature 472 490 4.6E-38 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 PRINTS PR00986 Valyl-tRNA synthetase signature 231 248 4.6E-38 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 PRINTS PR00986 Valyl-tRNA synthetase signature 440 461 4.6E-38 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:3.40.50.620 17 189 6.6E-28 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:1.10.730.10 518 743 1.5E-75 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Gene3D G3DSA:3.90.740.10 236 432 3.3E-62 T 29-03-2018 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 55 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 Pfam PF08264 Anticodon-binding domain of tRNA 604 748 1.6E-41 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 857 0.0 T 29-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CFE88_RS02990 f5991bd25bc27bbde090328f17665168 876 SUPERFAMILY SSF46589 810 874 1.02E-17 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 SUPERFAMILY SSF50249 1 77 4.63E-13 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 Hamap MF_00201 DNA repair protein RecO [recO]. 1 245 21.632 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 SUPERFAMILY SSF57863 81 233 5.75E-31 T 29-03-2018 CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 Gene3D G3DSA:2.40.50.140 1 81 2.5E-18 T 29-03-2018 CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 Pfam PF02565 Recombination protein O C terminal 83 239 2.9E-25 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 Pfam PF11967 Recombination protein O N terminal 1 77 5.0E-17 T 29-03-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal CFE88_RS03420 278d66c9102d7ab4b9720597b3af4f3d 253 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 245 1.1E-67 T 29-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 57 145 7.0E-7 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Pfam PF07724 AAA domain (Cdc48 subfamily) 220 353 4.7E-35 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 5 467 41.9 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Gene3D G3DSA:1.10.8.10 117 226 6.5E-21 T 29-03-2018 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 359 433 1.7E-7 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Gene3D G3DSA:1.10.8.10 227 254 5.3E-8 T 29-03-2018 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Gene3D G3DSA:3.40.50.300 255 364 1.6E-12 T 29-03-2018 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Gene3D G3DSA:1.10.8.60 365 455 3.6E-29 T 29-03-2018 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 SMART SM01086 359 455 1.0E-23 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 8 467 2.5E-188 T 29-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 SMART SM00382 53 356 7.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 Gene3D G3DSA:3.40.50.300 11 116 7.5E-5 T 29-03-2018 CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 SUPERFAMILY SSF52540 8 143 8.76E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05175 c1ca0ed7b25865bba68dd5511ae89ae9 467 SUPERFAMILY SSF52540 212 462 8.76E-75 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04810 a60ffabc68949d6015552a6ce944c73c 142 SUPERFAMILY SSF46689 11 83 7.44E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS04810 a60ffabc68949d6015552a6ce944c73c 142 Gene3D G3DSA:1.10.10.60 12 137 8.1E-8 T 29-03-2018 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 PIRSF PIRSF001586 1 221 6.6E-81 T 29-03-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 217 2.1E-97 T 29-03-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 202 6.8E-46 T 29-03-2018 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 Gene3D G3DSA:3.40.50.880 1 220 4.6E-39 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 SMART SM01211 1 218 1.0E-116 T 29-03-2018 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 216 41.543 T 29-03-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 CFE88_RS06010 72e1d9ba65de01f261ac0f444704b73b 223 SUPERFAMILY SSF52317 1 217 4.45E-75 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 SMART SM00382 23 173 0.0038 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 179 258 1.9E-6 T 29-03-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 SUPERFAMILY SSF52540 20 243 3.64E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 Pfam PF07728 AAA domain (dynein-related subfamily) 26 164 2.1E-28 T 29-03-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 100 118 2.0E-5 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 27 45 2.0E-5 T 29-03-2018 IPR001270 ClpA/B family GO:0005524 CFE88_RS04185 53e87df452d03731a70a0863af5c17d5 263 Gene3D G3DSA:3.40.50.300 17 170 4.5E-29 T 29-03-2018 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 Gene3D G3DSA:3.90.930.12 86 178 2.0E-40 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.5E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.5E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.5E-34 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 37.867 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 3.9E-75 T 29-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 SUPERFAMILY SSF56053 83 177 1.06E-35 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 Gene3D G3DSA:3.90.930.12 5 85 6.3E-29 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 29-03-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 SUPERFAMILY SSF56053 1 82 1.63E-26 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 PIRSF PIRSF002162 1 177 1.2E-49 T 29-03-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 Pfam PF00347 Ribosomal protein L6 90 164 2.1E-19 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00690 20c762c70fb6c39f86bde4b104da22c5 178 Pfam PF00347 Ribosomal protein L6 11 82 1.7E-20 T 29-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS05105 a3f31748e9658b8cfc606394d7a4e8a7 105 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 5 95 8.5E-15 T 29-03-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS05105 a3f31748e9658b8cfc606394d7a4e8a7 105 Gene3D G3DSA:3.30.1330.30 3 101 1.6E-20 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS05105 a3f31748e9658b8cfc606394d7a4e8a7 105 SUPERFAMILY SSF55315 5 100 5.98E-27 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 SUPERFAMILY SSF55307 207 318 3.89E-44 T 29-03-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 SUPERFAMILY SSF52490 13 208 2.22E-71 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 Pfam PF12327 FtsZ family, C-terminal domain 222 316 7.2E-34 T 29-03-2018 IPR024757 Cell division protein FtsZ, C-terminal CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 SMART SM00864 13 205 6.4E-116 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 SMART SM00865 207 324 1.0E-57 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 PRINTS PR00423 Cell division protein FtsZ signature 189 211 2.4E-50 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 PRINTS PR00423 Cell division protein FtsZ signature 212 233 2.4E-50 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 PRINTS PR00423 Cell division protein FtsZ signature 98 118 2.4E-50 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 PRINTS PR00423 Cell division protein FtsZ signature 126 147 2.4E-50 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 Gene3D G3DSA:3.40.50.1440 9 214 2.7E-47 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 Gene3D G3DSA:3.30.1330.20 215 323 1.9E-47 T 29-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 390 38.92 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 2.9E-45 T 29-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 327 5.9E-137 T 29-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 CFE88_RS05515 0f34f51fbe7f6bfb4c74006d1d12a85e 394 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 29-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CFE88_RS02965 8fe633e4f66c024792d55bded5df7ebd 226 SUPERFAMILY SSF69618 18 222 6.02E-42 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02965 8fe633e4f66c024792d55bded5df7ebd 226 Gene3D G3DSA:3.40.50.10090 128 225 7.3E-11 T 29-03-2018 CFE88_RS02965 8fe633e4f66c024792d55bded5df7ebd 226 Gene3D G3DSA:3.40.50.10090 29 127 4.7E-18 T 29-03-2018 CFE88_RS02965 8fe633e4f66c024792d55bded5df7ebd 226 Pfam PF02602 Uroporphyrinogen-III synthase HemD 21 214 7.3E-33 T 29-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 Gene3D G3DSA:2.20.150.10 9 42 1.7E-13 T 29-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 Pfam PF00294 pfkB family carbohydrate kinase 10 292 1.9E-56 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 Hamap MF_01557 Tagatose-6-phosphate kinase [lacC]. 1 310 58.764 T 29-03-2018 IPR005926 Tagatose-6-phosphate kinase GO:0009024|GO:0019512 KEGG: 00052+2.7.1.144|KEGG: 00710+2.7.1.14|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 307 1.7E-97 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 PIRSF PIRSF000535 1 310 1.3E-125 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 SUPERFAMILY SSF53613 1 290 2.96E-63 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 TIGRFAM TIGR01231 lacC: tagatose-6-phosphate kinase 1 310 7.5E-149 T 29-03-2018 IPR005926 Tagatose-6-phosphate kinase GO:0009024|GO:0019512 KEGG: 00052+2.7.1.144|KEGG: 00710+2.7.1.14|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 Gene3D G3DSA:3.40.1190.20 43 310 6.6E-38 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS00805 d5f588afc222a47e8283fc5f2f55b9ad 310 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 36 60 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 40 239 6.7E-52 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 PIRSF PIRSF000161 1 240 2.4E-76 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 240 25.337 T 29-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 SUPERFAMILY SSF51735 1 105 1.89E-21 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 SUPERFAMILY SSF51735 212 239 1.89E-21 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 106 2.4E-15 T 29-03-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 Gene3D G3DSA:3.30.360.10 122 211 3.0E-33 T 29-03-2018 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 Gene3D G3DSA:3.40.50.720 1 121 2.4E-19 T 29-03-2018 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 109 239 7.0E-39 T 29-03-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 130 147 - T 29-03-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CFE88_RS04255 eacfff20bc10305ebd4563afe3517dbf 240 SUPERFAMILY SSF55347 109 213 9.37E-29 T 29-03-2018 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 Gene3D G3DSA:3.90.110.10 151 315 1.7E-46 T 29-03-2018 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PRINTS PR00086 L-lactate dehydrogenase signature 122 142 3.0E-28 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PRINTS PR00086 L-lactate dehydrogenase signature 34 58 3.0E-28 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PRINTS PR00086 L-lactate dehydrogenase signature 146 164 3.0E-28 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PRINTS PR00086 L-lactate dehydrogenase signature 176 189 3.0E-28 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 3.0E-28 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 153 308 1.3E-29 T 29-03-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 6 310 9.8E-137 T 29-03-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 148 4.4E-37 T 29-03-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 SUPERFAMILY SSF51735 4 148 8.52E-42 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 Hamap MF_00487 Malate dehydrogenase [mdh]. 7 313 44.557 T 29-03-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 PIRSF PIRSF000102 3 315 1.3E-99 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 Gene3D G3DSA:3.40.50.720 8 150 2.0E-33 T 29-03-2018 CFE88_RS07785 a687dd5594b3679dbdda0b0c43b96cad 315 SUPERFAMILY SSF56327 150 310 2.31E-51 T 29-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CFE88_RS00655 31a6c1c28a48bae78c4948ccf4b92546 69 Pfam PF00831 Ribosomal L29 protein 4 60 2.8E-24 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00655 31a6c1c28a48bae78c4948ccf4b92546 69 Gene3D G3DSA:1.10.287.310 1 65 1.5E-24 T 29-03-2018 CFE88_RS00655 31a6c1c28a48bae78c4948ccf4b92546 69 SUPERFAMILY SSF46561 1 63 7.72E-23 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00655 31a6c1c28a48bae78c4948ccf4b92546 69 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.6E-22 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00655 31a6c1c28a48bae78c4948ccf4b92546 69 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.564 T 29-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS10305 ac37266796809a341597195ccebc111d 242 Gene3D G3DSA:3.10.310.10 165 241 0.0052 T 29-03-2018 CFE88_RS10305 ac37266796809a341597195ccebc111d 242 SUPERFAMILY SSF54506 33 233 4.38E-10 T 29-03-2018 CFE88_RS10305 ac37266796809a341597195ccebc111d 242 Gene3D G3DSA:3.10.310.10 5 95 6.3E-6 T 29-03-2018 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 SMART SM00829 8 343 7.2E-5 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 Pfam PF00107 Zinc-binding dehydrogenase 178 305 1.1E-30 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 Gene3D G3DSA:3.90.180.10 1 151 2.2E-38 T 29-03-2018 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 SUPERFAMILY SSF51735 141 309 1.74E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 SUPERFAMILY SSF50129 1 177 6.7E-43 T 29-03-2018 IPR011032 GroES-like CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 137 3.0E-22 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS12000 8e41608600de6af3518e95d0b98df4a1 350 Gene3D G3DSA:3.40.50.720 152 333 1.3E-33 T 29-03-2018 CFE88_RS11970 cfa3e27ab5a5a7945ae1c9bf6557ddaf 455 SUPERFAMILY SSF53474 7 454 1.67E-80 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11970 cfa3e27ab5a5a7945ae1c9bf6557ddaf 455 Pfam PF00135 Carboxylesterase family 8 438 7.4E-66 T 29-03-2018 IPR002018 Carboxylesterase, type B CFE88_RS11970 cfa3e27ab5a5a7945ae1c9bf6557ddaf 455 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 184 199 - T 29-03-2018 IPR019826 Carboxylesterase type B, active site CFE88_RS11970 cfa3e27ab5a5a7945ae1c9bf6557ddaf 455 Gene3D G3DSA:3.40.50.1820 3 455 1.0E-73 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11550 9eb78df4e2da102e67a9887ae2c75d31 71 SUPERFAMILY SSF140652 2 70 1.44E-18 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS11550 9eb78df4e2da102e67a9887ae2c75d31 71 Pfam PF06855 YozE SAM-like fold 2 66 9.1E-18 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS11550 9eb78df4e2da102e67a9887ae2c75d31 71 Gene3D G3DSA:1.10.150.260 1 68 7.5E-17 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 SUPERFAMILY SSF52540 59 398 4.13E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 SMART SM00994 10 49 8.9E-22 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Gene3D G3DSA:3.40.50.300 53 309 1.5E-70 T 29-03-2018 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 305 3.2E-48 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 389 2.7E-16 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 SMART SM00382 109 262 1.5E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Pfam PF06689 ClpX C4-type zinc finger 12 48 1.0E-18 T 29-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 SMART SM01086 311 403 2.2E-31 T 29-03-2018 IPR019489 Clp ATPase, C-terminal CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 3 405 2.6E-199 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 409 51.469 T 29-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 SUPERFAMILY SSF57716 11 46 5.7E-11 T 29-03-2018 CFE88_RS02940 5ab0ece494d8b6647a52e3b4cef7df41 420 Gene3D G3DSA:1.10.8.60 311 403 1.7E-31 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 282 5.3E-58 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Gene3D G3DSA:3.30.413.10 623 801 5.3E-37 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Gene3D G3DSA:3.50.50.60 103 241 8.4E-30 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Gene3D G3DSA:3.50.50.60 243 308 2.5E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 SUPERFAMILY SSF56014 627 796 4.71E-46 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 4.6E-18 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.6E-18 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.6E-18 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 4.6E-18 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 4.6E-18 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 SUPERFAMILY SSF51905 3 193 2.33E-43 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 790 1.9E-274 T 29-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00397 Sirohaem Fe-binding site signature 628 646 4.5E-5 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00397 Sirohaem Fe-binding site signature 671 689 4.5E-5 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 SUPERFAMILY SSF51905 147 305 1.11E-29 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 554 615 5.4E-10 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Pfam PF04324 BFD-like [2Fe-2S] binding domain 479 529 9.3E-11 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Pfam PF04324 BFD-like [2Fe-2S] binding domain 415 464 4.7E-16 T 29-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PIRSF PIRSF037149 1 800 0.0 T 29-03-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 671 687 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 624 759 1.5E-24 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.2E-12 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.2E-12 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 1.2E-12 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 1.2E-12 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 SUPERFAMILY SSF55124 511 615 1.5E-24 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Gene3D G3DSA:3.90.480.10 411 619 1.0E-12 T 29-03-2018 CFE88_RS12190 8438b7eb4081e2c6285eda2474d9c52f 801 Gene3D G3DSA:3.50.50.60 1 102 2.1E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03530 da59b3cf735f08d51313c50c587e2cbe 207 Gene3D G3DSA:3.60.15.10 1 205 3.4E-41 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03530 da59b3cf735f08d51313c50c587e2cbe 207 SMART SM00849 12 190 1.3E-43 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03530 da59b3cf735f08d51313c50c587e2cbe 207 Pfam PF00753 Metallo-beta-lactamase superfamily 11 190 4.6E-31 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03530 da59b3cf735f08d51313c50c587e2cbe 207 SUPERFAMILY SSF56281 8 199 6.55E-49 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS07350 e1475acbb52afa7f52c10ba46942609a 302 Gene3D G3DSA:3.40.50.300 12 168 9.0E-11 T 29-03-2018 CFE88_RS07350 e1475acbb52afa7f52c10ba46942609a 302 Pfam PF03668 P-loop ATPase protein family 12 294 3.8E-106 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 CFE88_RS07350 e1475acbb52afa7f52c10ba46942609a 302 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 11 297 41.222 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 CFE88_RS07350 e1475acbb52afa7f52c10ba46942609a 302 PIRSF PIRSF005052 11 300 2.4E-113 T 29-03-2018 IPR005337 RapZ-like family GO:0005524 CFE88_RS07350 e1475acbb52afa7f52c10ba46942609a 302 SUPERFAMILY SSF52540 11 167 3.17E-11 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 Gene3D G3DSA:3.40.190.10 25 116 1.3E-16 T 29-03-2018 CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 Pfam PF03180 NLPA lipoprotein 26 263 2.6E-84 T 29-03-2018 IPR004872 Lipoprotein NlpA family CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 Gene3D G3DSA:3.40.190.10 197 262 0.064 T 29-03-2018 CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 Gene3D G3DSA:3.40.190.10 117 196 2.7E-39 T 29-03-2018 CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 PIRSF PIRSF002854 1 265 2.6E-86 T 29-03-2018 IPR004872 Lipoprotein NlpA family CFE88_RS09065 a57b85eb36cec8ff2d1a32fbfef595f0 281 SUPERFAMILY SSF53850 25 276 3.34E-83 T 29-03-2018 CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 PIRSF PIRSF037489 1 366 1.9E-124 T 29-03-2018 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 Gene3D G3DSA:3.30.70.120 128 233 1.2E-29 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 5 344 2.6E-84 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 Gene3D G3DSA:3.40.1390.30 1 123 5.6E-37 T 29-03-2018 CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 Gene3D G3DSA:3.40.1390.30 239 351 7.8E-11 T 29-03-2018 CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 SUPERFAMILY SSF102705 1 365 3.53E-115 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CFE88_RS03455 7a033a90654e2437d74bb55220a6c45e 366 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 362 2.8E-67 T 29-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Gene3D G3DSA:3.30.930.10 67 276 1.3E-59 T 29-03-2018 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 85 321 1.1E-55 T 29-03-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Pfam PF02237 Biotin protein ligase C terminal domain 284 323 1.8E-6 T 29-03-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 SUPERFAMILY SSF50037 280 322 1.97E-6 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Pfam PF08279 HTH domain 6 59 1.0E-13 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Gene3D G3DSA:1.10.10.10 1 64 1.1E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 323 30.116 T 29-03-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 SUPERFAMILY SSF55681 75 272 1.24E-55 T 29-03-2018 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Gene3D G3DSA:2.30.30.100 278 321 5.6E-11 T 29-03-2018 CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 SUPERFAMILY SSF46785 5 60 1.16E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03945 913f4821bd83cee6ede2872a954b02a8 323 Pfam PF03099 Biotin/lipoate A/B protein ligase family 99 212 3.5E-13 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SUPERFAMILY SSF81767 229 351 8.89E-37 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SUPERFAMILY SSF52540 402 560 6.48E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Gene3D G3DSA:3.40.50.300 401 616 3.5E-30 T 29-03-2018 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Pfam PF07517 SecA DEAD-like domain 10 385 9.3E-103 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Gene3D G3DSA:1.10.3060.10 617 781 9.5E-21 T 29-03-2018 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SUPERFAMILY SSF81886 580 795 2.22E-42 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 397 410 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 323 345 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 98 112 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 114 124 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 360 377 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 60 84 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 PRINTS PR00906 SecA protein signature 172 192 5.4E-54 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Hamap MF_01382 Protein translocase subunit SecA [secA]. 1 784 15.434 T 29-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Pfam PF01043 SecA preprotein cross-linking domain 234 342 3.0E-26 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Gene3D G3DSA:3.40.50.300 8 263 4.0E-42 T 29-03-2018 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Gene3D G3DSA:3.40.50.300 297 400 0.098 T 29-03-2018 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 TIGRFAM TIGR03714 secA2: accessory Sec system translocase SecA2 9 771 0.0 T 29-03-2018 IPR022490 Protein translocase subunit SecA2 GO:0015031|GO:0015450 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 Pfam PF07516 SecA Wing and Scaffold domain 579 779 5.3E-24 T 29-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SUPERFAMILY SSF52540 352 399 5.13E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SUPERFAMILY SSF52540 5 230 5.13E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SMART SM00958 230 342 4.7E-39 T 29-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 CFE88_RS10745 6651621a80625051874348e9fd07ab15 796 SMART SM00957 2 386 2.4E-194 T 29-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CFE88_RS01975 d8c2078ee73d5d0b52602216e7441512 505 Pfam PF00005 ABC transporter 37 162 1.4E-9 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS01975 d8c2078ee73d5d0b52602216e7441512 505 SUPERFAMILY SSF52540 34 229 7.99E-22 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01975 d8c2078ee73d5d0b52602216e7441512 505 Gene3D G3DSA:3.40.50.300 12 259 8.5E-26 T 29-03-2018 CFE88_RS08600 28a460cd3a1dded31cfe67cb8acf74f7 60 Gene3D G3DSA:1.20.5.1030 6 54 2.4E-18 T 29-03-2018 CFE88_RS08600 28a460cd3a1dded31cfe67cb8acf74f7 60 Hamap MF_00422 Protein translocase subunit SecE [secE]. 2 57 12.776 T 29-03-2018 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS08600 28a460cd3a1dded31cfe67cb8acf74f7 60 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 6 54 1.6E-17 T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS08600 28a460cd3a1dded31cfe67cb8acf74f7 60 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 6 59 1.8E-21 T 29-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 CFE88_RS08600 28a460cd3a1dded31cfe67cb8acf74f7 60 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 7 35 - T 29-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 990 1025 1.4E-4 T 29-03-2018 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Pfam PF17210 SdrD B-like domain 603 709 2.1E-23 T 29-03-2018 IPR033764 SD-repeat containing protein, B domain CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Pfam PF17210 SdrD B-like domain 716 817 4.5E-30 T 29-03-2018 IPR033764 SD-repeat containing protein, B domain CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Pfam PF04650 YSIRK type signal peptide 17 42 2.3E-10 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 SUPERFAMILY SSF49401 428 597 2.86E-52 T 29-03-2018 IPR008966 Adhesion domain CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 SUPERFAMILY SSF49401 278 426 1.86E-35 T 29-03-2018 IPR008966 Adhesion domain CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Gene3D G3DSA:2.60.40.10 599 713 2.3E-20 T 29-03-2018 IPR013783 Immunoglobulin-like fold CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Gene3D G3DSA:2.60.40.10 714 833 3.7E-26 T 29-03-2018 IPR013783 Immunoglobulin-like fold CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Pfam PF10425 C-terminus of bacterial fibrinogen-binding adhesin 431 581 3.5E-37 T 29-03-2018 IPR011266 Fibrinogen-binding domain 2 GO:0005618|GO:0007155 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 12 53 7.3E-12 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Gene3D G3DSA:2.60.40.1290 435 588 9.0E-42 T 29-03-2018 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Gene3D G3DSA:2.60.40.1280 278 434 7.4E-34 T 29-03-2018 IPR011252 Fibrogen-binding domain 1 GO:0005618|GO:0007155 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 SUPERFAMILY SSF117074 599 678 5.89E-15 T 29-03-2018 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 SUPERFAMILY SSF117074 699 789 2.35E-22 T 29-03-2018 CFE88_RS08440 e77cdb6fd1d336e3e54ed46189d4d1da 1030 Pfam PF00746 LPXTG cell wall anchor motif 984 1028 3.2E-10 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 Pfam PF00072 Response regulator receiver domain 3 115 3.0E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 Gene3D G3DSA:1.10.10.10 127 218 1.5E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 SUPERFAMILY SSF52172 2 126 4.13E-29 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 SMART SM00448 1 115 4.2E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 5.9E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 5.9E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 5.9E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 Gene3D G3DSA:3.40.50.2300 1 126 2.4E-28 T 29-03-2018 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 SMART SM00421 153 210 1.1E-24 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 8.4E-22 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS12240 8fa1568075b5c9543e412a96ca044fd4 218 SUPERFAMILY SSF46894 146 216 7.14E-21 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 Pfam PF00199 Catalase 12 393 4.6E-181 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 290 317 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 85 103 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 106 123 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 322 348 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 22 45 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PRINTS PR00067 Catalase signature 125 143 1.4E-67 T 29-03-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 SUPERFAMILY SSF56634 3 500 3.53E-199 T 29-03-2018 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 PIRSF PIRSF038928 1 489 1.3E-209 T 29-03-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 335 343 - T 29-03-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 Gene3D G3DSA:2.40.180.10 1 359 4.4E-155 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 SMART SM01060 9 398 4.3E-266 T 29-03-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 Pfam PF06628 Catalase-related immune-responsive 422 483 4.4E-22 T 29-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS04555 39828eb23b5d9166b1f4ff2ec2760c89 504 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 29-03-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 CFE88_RS12360 4b67c8ac8debce36ea6d5c35a95577d2 177 Gene3D G3DSA:1.10.10.60 1 96 6.4E-5 T 29-03-2018 CFE88_RS12360 4b67c8ac8debce36ea6d5c35a95577d2 177 Pfam PF04394 Protein of unknown function, DUF536 93 132 1.4E-5 T 29-03-2018 IPR007489 Domain of unknown function DUF536 CFE88_RS12375 4b67c8ac8debce36ea6d5c35a95577d2 177 Gene3D G3DSA:1.10.10.60 1 96 6.4E-5 T 29-03-2018 CFE88_RS12375 4b67c8ac8debce36ea6d5c35a95577d2 177 Pfam PF04394 Protein of unknown function, DUF536 93 132 1.4E-5 T 29-03-2018 IPR007489 Domain of unknown function DUF536 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 4 449 34.034 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 ProSitePatterns PS01008 DnaA protein signature. 408 427 - T 29-03-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 7 448 1.4E-180 T 29-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 SUPERFAMILY SSF48295 345 450 1.83E-37 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 359 427 1.3E-30 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 211 225 5.7E-53 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 147 167 5.7E-53 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 179 193 5.7E-53 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 408 427 5.7E-53 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 245 272 5.7E-53 T 29-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Pfam PF00308 Bacterial dnaA protein 115 331 1.6E-104 T 29-03-2018 IPR013317 Chromosomal replication initiator protein DnaA CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 SMART SM00382 146 277 5.0E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Gene3D G3DSA:1.10.8.60 280 351 1.1E-31 T 29-03-2018 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Pfam PF11638 DnaA N-terminal domain 5 64 4.1E-8 T 29-03-2018 IPR024633 DnaA N-terminal domain CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 SMART SM00760 358 427 4.7E-41 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 SUPERFAMILY SSF52540 114 325 2.5E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Gene3D G3DSA:3.40.50.300 86 278 1.1E-22 T 29-03-2018 CFE88_RS09700 ef68187ec95281d81af97dde5fcc0d8b 451 Gene3D G3DSA:1.10.1750.10 352 449 2.1E-37 T 29-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 Gene3D G3DSA:3.40.50.1000 76 233 4.5E-28 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 71 190 3.1E-10 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 SUPERFAMILY SSF56784 6 225 6.3E-39 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 195 2.8E-29 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 143 196 6.3E-9 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 157 177 3.8E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 139 155 3.8E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 3.8E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 108 121 3.8E-13 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 Gene3D G3DSA:3.40.50.1000 1 45 0.15 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08155 6e8606670f71468667ea8d15c9cee8d5 242 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 98 198 2.7E-13 T 29-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 354 1.0E-159 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 SMART SM00937 63 177 2.5E-62 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 Gene3D G3DSA:3.30.160.20 208 313 4.9E-29 T 29-03-2018 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 Pfam PF03462 PCRF domain 9 202 7.9E-74 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 Gene3D G3DSA:1.20.58.410 2 94 3.3E-17 T 29-03-2018 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 Pfam PF00472 RF-1 domain 210 318 2.9E-40 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 354 39.944 T 29-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CFE88_RS01180 16fb35664718c93a859cee95f8d7e48a 358 SUPERFAMILY SSF75620 8 350 7.98E-133 T 29-03-2018 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 Gene3D G3DSA:3.40.630.10 251 384 2.9E-15 T 29-03-2018 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 Gene3D G3DSA:3.40.630.10 3 246 1.5E-50 T 29-03-2018 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 375 2.5E-112 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 SUPERFAMILY SSF53187 300 381 1.44E-81 T 29-03-2018 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 SUPERFAMILY SSF53187 5 199 1.44E-81 T 29-03-2018 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 Pfam PF01546 Peptidase family M20/M25/M40 74 374 3.6E-32 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 SUPERFAMILY SSF55031 186 297 3.79E-27 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 Pfam PF07687 Peptidase dimerisation domain 188 278 5.2E-9 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS08525 0a9278710c1483c940a163843ea3f4af 389 PIRSF PIRSF005962 3 387 2.6E-127 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 5 434 36.261 T 29-03-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 Gene3D G3DSA:3.50.50.60 1 375 2.4E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 336 359 - T 29-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 Pfam PF01134 Glucose inhibited division protein A 4 366 1.2E-114 T 29-03-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 SUPERFAMILY SSF51905 2 365 1.13E-33 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05190 fc858a43530cf94ff472a5fb0712d68a 435 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 3 433 7.7E-223 T 29-03-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 Gene3D G3DSA:3.40.50.1100 195 281 0.0016 T 29-03-2018 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 SUPERFAMILY SSF56784 1 285 1.34E-67 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 Gene3D G3DSA:3.40.50.1000 1 26 0.03 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 ProSitePatterns PS01229 Hypothetical cof family signature 2. 234 256 - T 29-03-2018 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 280 2.3E-74 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 280 1.0E-58 T 29-03-2018 IPR000150 Cof family GO:0016787 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 29-03-2018 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 253 2.2E-26 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 Gene3D G3DSA:3.30.1240.10 27 84 7.3E-7 T 29-03-2018 CFE88_RS08450 9367c2b20c5795117427e913cce30d4e 292 Gene3D G3DSA:3.30.1240.10 85 194 5.2E-26 T 29-03-2018 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SUPERFAMILY SSF54631 65 207 3.66E-31 T 29-03-2018 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SMART SM00116 161 208 5.3E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SMART SM00116 98 148 1.1E-8 T 29-03-2018 IPR000644 CBS domain CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 PIRSF PIRSF000130 1 488 3.2E-205 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SMART SM01240 9 475 0.0 T 29-03-2018 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 10 457 6.5E-199 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SUPERFAMILY SSF51412 219 479 1.28E-121 T 29-03-2018 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 SUPERFAMILY SSF51412 5 92 1.28E-121 T 29-03-2018 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 297 309 - T 29-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 10 488 82.816 T 29-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 475 3.8E-162 T 29-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 Gene3D G3DSA:3.20.20.70 3 483 6.1E-110 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 Pfam PF00571 CBS domain 97 144 1.6E-8 T 29-03-2018 IPR000644 CBS domain CFE88_RS09300 735cc0f03ae2171630882cf191333b57 488 Pfam PF00571 CBS domain 153 204 2.5E-8 T 29-03-2018 IPR000644 CBS domain CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 SUPERFAMILY SSF54821 106 205 2.22E-37 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 Pfam PF07650 KH domain 37 107 3.9E-20 T 29-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 Gene3D G3DSA:3.30.300.20 17 106 2.1E-30 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 29-03-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 SMART SM00322 59 124 3.3E-9 T 29-03-2018 IPR004087 K Homology domain GO:0003676 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 37.681 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 1.3E-92 T 29-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 1.2E-38 T 29-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 SUPERFAMILY SSF54814 2 105 8.37E-38 T 29-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 CFE88_RS00645 fb51e5b71c822aa5953084eb707c8053 217 Gene3D G3DSA:3.30.1140.32 107 206 8.8E-36 T 29-03-2018 CFE88_RS04760 9578c228d604b0baa5455486d7cb5191 116 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 9 85 6.5E-5 T 29-03-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CFE88_RS04760 9578c228d604b0baa5455486d7cb5191 116 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 4 108 4.6E-13 T 29-03-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component CFE88_RS05825 9758b7e8bc278a5c5a05a44c50b31e45 383 Pfam PF13273 Protein of unknown function (DUF4064) 14 125 6.2E-19 T 29-03-2018 IPR025273 Domain of unknown function DUF4064 CFE88_RS05825 9758b7e8bc278a5c5a05a44c50b31e45 383 Gene3D G3DSA:1.20.1070.10 1 352 1.3E-5 T 29-03-2018 CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 SMART SM00382 34 219 1.9E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 Gene3D G3DSA:3.40.50.300 3 241 2.4E-66 T 29-03-2018 CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 8 255 2.7E-101 T 29-03-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 SUPERFAMILY SSF52540 4 235 1.17E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 Pfam PF00005 ABC transporter 25 170 1.7E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS00755 36eb668dc2487f3d7ebbb3edb00d4584 269 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 Gene3D G3DSA:2.30.30.180 87 153 9.3E-19 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 155 22.226 T 29-03-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 SUPERFAMILY SSF75420 2 83 8.63E-25 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 Pfam PF02576 RimP N-terminal domain 11 83 7.3E-25 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 Gene3D G3DSA:3.30.300.70 1 80 2.5E-25 T 29-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 SUPERFAMILY SSF74942 84 153 4.84E-17 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CFE88_RS05120 d849851c828e730fef1b2d2cecbe11bf 155 Pfam PF17384 RimP C-terminal SH3 domain 86 150 1.7E-15 T 29-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 265 420 2.0E-45 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 PIRSF PIRSF003095 1 433 3.6E-131 T 29-03-2018 IPR005215 Trigger factor GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 SUPERFAMILY SSF54534 89 243 5.89E-37 T 29-03-2018 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Gene3D G3DSA:3.30.70.1050 1 119 7.4E-40 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Gene3D G3DSA:1.10.3120.10 213 399 1.3E-49 T 29-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 SUPERFAMILY SSF102735 1 131 2.35E-41 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 SUPERFAMILY SSF109998 250 429 4.58E-40 T 29-03-2018 IPR027304 Trigger factor/SurA domain CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 TIGRFAM TIGR00115 tig: trigger factor 12 420 1.3E-138 T 29-03-2018 IPR005215 Trigger factor GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 7.0E-46 T 29-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 232 3.3E-16 T 29-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CFE88_RS02935 da958320df9ece475b9dc6baeda09fba 433 Hamap MF_00303 Trigger factor [tig]. 1 427 23.685 T 29-03-2018 IPR005215 Trigger factor GO:0015031 CFE88_RS01680 2d0783fe5eeed6d851c9025f40b9c02c 304 SMART SM00382 27 206 5.9E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01680 2d0783fe5eeed6d851c9025f40b9c02c 304 Pfam PF00005 ABC transporter 18 157 1.2E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS01680 2d0783fe5eeed6d851c9025f40b9c02c 304 SUPERFAMILY SSF52540 4 221 3.2E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01680 2d0783fe5eeed6d851c9025f40b9c02c 304 Gene3D G3DSA:3.40.50.300 1 302 1.0E-48 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 SUPERFAMILY SSF55424 319 437 3.26E-26 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Gene3D G3DSA:3.40.50.720 143 314 2.9E-24 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Gene3D G3DSA:3.30.390.30 322 438 5.3E-20 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Hamap MF_01608 Coenzyme A disulfide reductase [cdr]. 1 438 71.494 T 29-03-2018 IPR023536 Coenzyme A disulphide reductase, staphyolococci GO:0050451|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 SUPERFAMILY SSF51905 3 309 1.17E-32 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Gene3D G3DSA:3.50.50.60 1 134 1.5E-11 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.0E-21 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 2.0E-21 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.0E-21 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 2.0E-21 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.0E-21 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 6.5E-14 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 6.5E-14 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 6.5E-14 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 6.5E-14 T 29-03-2018 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 TIGRFAM TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase 3 434 9.4E-206 T 29-03-2018 IPR017758 Coenzyme A disulphide reductase GO:0003756|GO:0050451|GO:0050660|GO:0050661|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 326 424 1.0E-8 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS06665 6e1a35cae5eef39817ebb9e929b3f6d4 438 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 296 4.2E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS12640 fe5debb9dba420d93dffa9adc9418794 91 Pfam PF02583 Metal-sensitive transcriptional repressor 9 87 1.6E-28 T 29-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CFE88_RS07300 e687da3a69b61794de55e1bff87437b7 337 Gene3D G3DSA:3.40.50.1360 91 336 2.4E-33 T 29-03-2018 CFE88_RS07300 e687da3a69b61794de55e1bff87437b7 337 SUPERFAMILY SSF46785 19 83 1.24E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07300 e687da3a69b61794de55e1bff87437b7 337 SUPERFAMILY SSF100950 96 336 5.27E-64 T 29-03-2018 CFE88_RS07300 e687da3a69b61794de55e1bff87437b7 337 Gene3D G3DSA:1.10.10.10 19 87 9.3E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07300 e687da3a69b61794de55e1bff87437b7 337 Pfam PF04198 Putative sugar-binding domain 92 336 2.2E-70 T 29-03-2018 IPR007324 Sugar-binding domain, putative GO:0030246 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Pfam PF00970 Oxidoreductase FAD-binding domain 152 251 2.5E-7 T 29-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 SUPERFAMILY SSF52343 255 375 6.29E-23 T 29-03-2018 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 SUPERFAMILY SSF63380 146 252 2.15E-20 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Gene3D G3DSA:2.40.30.10 157 252 2.4E-19 T 29-03-2018 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Pfam PF00175 Oxidoreductase NAD-binding domain 262 350 7.7E-5 T 29-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Pfam PF00042 Globin 8 102 4.3E-8 T 29-03-2018 IPR000971 Globin GO:0020037 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Gene3D G3DSA:1.10.490.10 1 156 9.0E-34 T 29-03-2018 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 PRINTS PR00409 Phthalate dioxygenase reductase family signature 261 280 2.2E-7 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 PRINTS PR00409 Phthalate dioxygenase reductase family signature 341 349 2.2E-7 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 PRINTS PR00409 Phthalate dioxygenase reductase family signature 225 239 2.2E-7 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 PRINTS PR00409 Phthalate dioxygenase reductase family signature 239 253 2.2E-7 T 29-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 SUPERFAMILY SSF46458 1 149 7.15E-38 T 29-03-2018 IPR009050 Globin-like CFE88_RS07890 4615685e4692c2d6abda3064b980b995 381 Gene3D G3DSA:3.40.50.80 253 380 3.6E-17 T 29-03-2018 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 SUPERFAMILY SSF54211 1 113 8.85E-34 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 Pfam PF00825 Ribonuclease P 1 106 1.9E-31 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 2 106 7.8E-29 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 115 2.0E-56 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 110 20.029 T 29-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 29-03-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 CFE88_RS09690 d6177e76d79f52fd4c13553bcba0a976 115 Gene3D G3DSA:3.30.230.10 1 115 2.3E-32 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS03450 f7bc5c6f3bc310fabfb31cae598d83df 229 Gene3D G3DSA:3.40.50.150 2 164 3.4E-13 T 29-03-2018 CFE88_RS03450 f7bc5c6f3bc310fabfb31cae598d83df 229 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 20 223 1.8E-72 T 29-03-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 CFE88_RS03450 f7bc5c6f3bc310fabfb31cae598d83df 229 PIRSF PIRSF018637 2 228 1.6E-87 T 29-03-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 CFE88_RS03450 f7bc5c6f3bc310fabfb31cae598d83df 229 SUPERFAMILY SSF53335 16 125 4.62E-7 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 Gene3D G3DSA:3.30.1220.10 204 307 9.5E-15 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 220 304 1.2E-12 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 SMART SM00833 220 306 3.6E-12 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 Gene3D G3DSA:3.40.50.300 6 203 4.2E-32 T 29-03-2018 CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 SUPERFAMILY SSF90002 220 303 2.48E-12 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 SUPERFAMILY SSF52540 8 194 7.35E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07795 ece097c0ff4b9e26a16aa07ba9fd8243 308 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 11 184 3.8E-43 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 Gene3D G3DSA:3.90.70.10 213 395 2.0E-19 T 29-03-2018 CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 SUPERFAMILY SSF54403 42 211 1.87E-70 T 29-03-2018 CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 ProSitePatterns PS00639 Eukaryotic thiol (cysteine) proteases histidine active site. 339 349 - T 29-03-2018 IPR025660 Cysteine peptidase, histidine active site Reactome: R-HSA-2132295 CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 Gene3D G3DSA:3.10.500.10 41 203 1.4E-46 T 29-03-2018 IPR028076 Staphopain proregion CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 Pfam PF14731 Staphopain proregion 42 210 5.7E-85 T 29-03-2018 IPR028076 Staphopain proregion CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 Pfam PF05543 Staphopain peptidase C47 224 395 4.6E-101 T 29-03-2018 IPR008750 Staphopain peptidase C47 GO:0006508|GO:0008234 CFE88_RS10220 73e31d8d3b6fd2a93180a0f7271c2731 395 SUPERFAMILY SSF54001 224 395 3.43E-99 T 29-03-2018 CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 3.1E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 99 3.1E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 3.1E-6 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 Pfam PF12146 Serine aminopeptidase, S33 9 244 4.6E-43 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 Gene3D G3DSA:3.40.50.1820 1 260 3.7E-23 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS02530 f593f65a4d9f7aa7d64048188f05b26e 275 SUPERFAMILY SSF53474 5 258 2.22E-25 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 SUPERFAMILY SSF52540 160 332 4.67E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 29-03-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 SUPERFAMILY SSF82051 1 157 1.57E-55 T 29-03-2018 IPR006169 GTP1/OBG domain CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Hamap MF_01454 GTPase Obg [obg]. 1 329 46.976 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 1.0E-33 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 328 4.6E-140 T 29-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Pfam PF01018 GTP1/OBG 3 157 8.2E-61 T 29-03-2018 IPR006169 GTP1/OBG domain CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Gene3D G3DSA:2.70.210.12 1 155 6.3E-59 T 29-03-2018 IPR006169 GTP1/OBG domain CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 360 429 2.2E-26 T 29-03-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Gene3D G3DSA:3.40.50.300 158 337 1.2E-32 T 29-03-2018 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 SUPERFAMILY SSF102741 358 430 1.44E-22 T 29-03-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Pfam PF01926 50S ribosome-binding GTPase 160 283 1.5E-23 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 PIRSF PIRSF002401 1 378 3.2E-140 T 29-03-2018 IPR035101 GTP-binding protein, Obg-type CFE88_RS03050 3e934e7033203bc829d0e29760713c3f 430 Pfam PF09269 Domain of unknown function (DUF1967) 360 428 1.2E-24 T 29-03-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 CFE88_RS01970 27d131f1dd40d5dfb3e88e0d22161548 104 Gene3D G3DSA:1.10.287.880 2 51 3.0E-21 T 29-03-2018 CFE88_RS01970 27d131f1dd40d5dfb3e88e0d22161548 104 SUPERFAMILY SSF101697 1 103 4.45E-44 T 29-03-2018 IPR014938 Protein of unknown function DUF1811 CFE88_RS01970 27d131f1dd40d5dfb3e88e0d22161548 104 Pfam PF08838 Protein of unknown function (DUF1811) 4 103 9.9E-41 T 29-03-2018 IPR014938 Protein of unknown function DUF1811 CFE88_RS01970 27d131f1dd40d5dfb3e88e0d22161548 104 Gene3D G3DSA:2.30.30.340 52 103 4.8E-20 T 29-03-2018 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 TIGRFAM TIGR02079 THD1: threonine dehydratase 10 422 1.8E-187 T 29-03-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 SUPERFAMILY SSF53686 10 366 5.5E-100 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 421 1.9E-20 T 29-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 Gene3D G3DSA:3.40.50.1100 30 145 5.6E-30 T 29-03-2018 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 29-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 SUPERFAMILY SSF55021 339 416 6.41E-9 T 29-03-2018 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 Gene3D G3DSA:3.40.50.1100 146 332 1.1E-44 T 29-03-2018 CFE88_RS01465 1b862c8f3133d3e9624baa6ae642a988 422 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 316 1.1E-76 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 5.1E-45 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 Gene3D G3DSA:3.40.50.1370 5 164 1.9E-53 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 228 238 3.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 3.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 3.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 309 320 3.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 3.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 330 8.1E-124 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 275 1.4E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 1.4E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 1.4E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 295 318 1.4E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 331 81.134 T 29-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 SUPERFAMILY SSF53671 2 332 1.15E-99 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 Gene3D G3DSA:3.40.50.1370 165 332 2.2E-51 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10425 6714cd275df50d5475ac9a927f9a25fe 333 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 328 5.3E-56 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 SUPERFAMILY SSF52540 159 405 1.3E-74 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Gene3D G3DSA:3.40.50.300 141 349 4.1E-65 T 29-03-2018 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Gene3D G3DSA:1.10.8.60 350 422 3.7E-24 T 29-03-2018 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Pfam PF01434 Peptidase family M41 395 604 5.3E-84 T 29-03-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 SMART SM00382 197 336 1.4E-26 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 333 2.6E-46 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 ProSitePatterns PS00674 AAA-protein family signature. 304 322 - T 29-03-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Pfam PF06480 FtsH Extracellular 9 102 3.4E-11 T 29-03-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 605 5.3E-240 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 SUPERFAMILY SSF140990 415 607 1.83E-67 T 29-03-2018 CFE88_RS08810 e5e0e89367db03b1491f630c73ad9717 700 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 618 37.779 T 29-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 SUPERFAMILY SSF53067 1 247 5.37E-67 T 29-03-2018 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 247 8.4E-69 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 SUPERFAMILY SSF53067 252 498 8.95E-66 T 29-03-2018 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 Gene3D G3DSA:3.30.420.40 245 512 4.2E-61 T 29-03-2018 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 TIGRFAM TIGR01314 gntK_FGGY: gluconate kinase 3 508 1.0E-272 T 29-03-2018 IPR006002 Gluconate kinase GO:0019521|GO:0046316 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 364 384 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 Gene3D G3DSA:3.30.420.40 1 244 9.0E-65 T 29-03-2018 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 PIRSF PIRSF000538 1 505 2.1E-139 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS11850 8df96c801975a626c5b2e1002a322f52 513 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 452 1.0E-33 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 325 26.239 T 29-03-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 Gene3D G3DSA:1.10.10.10 1 85 1.7E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 PIRSF PIRSF005485 1 325 1.8E-89 T 29-03-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 SUPERFAMILY SSF55781 72 324 2.35E-47 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 325 1.1E-89 T 29-03-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 SUPERFAMILY SSF46785 1 82 1.85E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 Pfam PF01628 HrcA protein C terminal domain 107 318 7.7E-36 T 29-03-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 CFE88_RS03340 d3964670727ee13f37412f81060893cc 325 Gene3D G3DSA:3.30.450.40 182 324 1.8E-24 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS03985 63da64b08dbab970ac6351117631a23e 110 Pfam PF08807 Bacterial domain of unknown function (DUF1798) 5 107 7.0E-31 T 29-03-2018 IPR014913 Protein of unknown function DUF1798 CFE88_RS03985 63da64b08dbab970ac6351117631a23e 110 SUPERFAMILY SSF140415 1 108 9.16E-35 T 29-03-2018 IPR023351 YppE-like domain CFE88_RS03985 63da64b08dbab970ac6351117631a23e 110 Gene3D G3DSA:1.20.120.440 1 110 2.2E-30 T 29-03-2018 IPR023351 YppE-like domain CFE88_RS11960 ef095dc328ac6fdb2d3e3a0810e8271c 258 Pfam PF03649 Uncharacterised protein family (UPF0014) 4 241 1.2E-66 T 29-03-2018 IPR005226 UPF0014 family CFE88_RS11960 ef095dc328ac6fdb2d3e3a0810e8271c 258 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 1 247 5.1E-67 T 29-03-2018 IPR005226 UPF0014 family CFE88_RS01580 cbb408e844e6a1f42d38ae14ab2c456e 319 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 34 58 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS01580 cbb408e844e6a1f42d38ae14ab2c456e 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 253 266 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS01580 cbb408e844e6a1f42d38ae14ab2c456e 319 Pfam PF00294 pfkB family carbohydrate kinase 1 311 1.2E-70 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB CFE88_RS01580 cbb408e844e6a1f42d38ae14ab2c456e 319 SUPERFAMILY SSF53613 1 318 2.34E-76 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS01580 cbb408e844e6a1f42d38ae14ab2c456e 319 Gene3D G3DSA:3.40.1190.20 3 319 4.3E-65 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 SUPERFAMILY SSF51569 62 359 1.01E-97 T 29-03-2018 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 95 351 5.4E-115 T 29-03-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 SMART SM00830 9 88 1.4E-25 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 Pfam PF01817 Chorismate mutase type II 9 86 1.1E-20 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 Gene3D G3DSA:3.20.20.70 95 357 2.1E-72 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 Pfam PF00793 DAHP synthetase I family 110 353 2.5E-88 T 29-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 TIGRFAM TIGR01801 CM_A: chorismate mutase 1 101 2.8E-46 T 29-03-2018 IPR010954 Chorismate mutase, Firmicutes/Deinococcus KEGG: 00400+2.5.1.54+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6164|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 Gene3D G3DSA:1.20.59.10 3 89 5.9E-25 T 29-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CFE88_RS02655 ab85e43c3f5bc7ebcb6d81a4197c8bb9 363 SUPERFAMILY SSF48600 4 87 2.29E-21 T 29-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 159 171 - T 29-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 18 497 6.3E-111 T 29-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 SUPERFAMILY SSF103473 277 494 2.18E-31 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 SUPERFAMILY SSF103473 7 215 2.18E-31 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 Gene3D G3DSA:1.20.1250.20 238 498 5.0E-13 T 29-03-2018 CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 Pfam PF00854 POT family 100 464 2.9E-60 T 29-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 CFE88_RS07555 351fed1ca02628f5062ddcbc842e386f 501 Gene3D G3DSA:1.20.1250.20 11 218 7.5E-20 T 29-03-2018 CFE88_RS02550 bb668a15f9e46c36decf89856c597065 404 SUPERFAMILY SSF103473 5 391 8.76E-56 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS02550 bb668a15f9e46c36decf89856c597065 404 Pfam PF07690 Major Facilitator Superfamily 10 221 4.8E-22 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS02550 bb668a15f9e46c36decf89856c597065 404 Gene3D G3DSA:1.20.1250.20 4 179 1.0E-22 T 29-03-2018 CFE88_RS02550 bb668a15f9e46c36decf89856c597065 404 Gene3D G3DSA:1.20.1250.20 194 402 9.6E-27 T 29-03-2018 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 Hamap MF_01201 Alanine racemase. 1 357 19.003 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 Pfam PF00842 Alanine racemase, C-terminal domain 236 333 3.4E-17 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 Gene3D G3DSA:3.20.20.10 6 219 2.6E-20 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 SUPERFAMILY SSF51419 8 226 3.63E-35 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 SUPERFAMILY SSF50621 230 349 6.98E-21 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 223 1.2E-38 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 150 161 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 269 284 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 196 223 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 58 76 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 289 306 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 113 125 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 PRINTS PR00992 Alanine racemase signature 22 38 9.9E-19 T 29-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 Gene3D G3DSA:2.40.37.10 220 356 1.5E-25 T 29-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CFE88_RS04240 d58fb67c726b551dcefae872322abd9f 357 SMART SM01005 235 357 6.1E-19 T 29-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS12215 8ef0c8dc1719c0d0b56a6d0ea665f6ac 558 Pfam PF01609 Transposase DDE domain 264 515 8.5E-38 T 29-03-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS12215 8ef0c8dc1719c0d0b56a6d0ea665f6ac 558 Gene3D G3DSA:3.90.350.10 259 498 2.0E-7 T 29-03-2018 IPR014736 Transposase, Tn5-like, core CFE88_RS12215 8ef0c8dc1719c0d0b56a6d0ea665f6ac 558 Pfam PF05598 Transposase domain (DUF772) 49 117 1.6E-14 T 29-03-2018 IPR008490 Transposase InsH, N-terminal CFE88_RS05690 336ed360baa670fd3a70c45a397d447d 775 Pfam PF04650 YSIRK type signal peptide 14 38 4.7E-11 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS05690 336ed360baa670fd3a70c45a397d447d 775 Pfam PF00746 LPXTG cell wall anchor motif 733 775 8.8E-6 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS05690 336ed360baa670fd3a70c45a397d447d 775 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 9 47 7.6E-14 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 Gene3D G3DSA:3.90.1150.10 1 165 6.2E-39 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 Pfam PF00202 Aminotransferase class-III 33 397 4.4E-72 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 Gene3D G3DSA:3.40.640.10 172 309 1.3E-44 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 426 99.803 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 Gene3D G3DSA:3.90.1150.10 310 427 7.4E-17 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 424 7.9E-189 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CFE88_RS02975 2be497b82fb809bd276d32ca3f994156 427 SUPERFAMILY SSF53383 2 425 6.93E-127 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10155 ae9c2924baff1b173d881fcdfb336f30 514 Pfam PF16929 Accessory Sec system GspB-transporter 6 513 4.1E-193 T 29-03-2018 IPR022267 Accessory Sec system protein Asp2 GO:0015031 CFE88_RS10155 ae9c2924baff1b173d881fcdfb336f30 514 SUPERFAMILY SSF53474 281 403 3.49E-6 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10155 ae9c2924baff1b173d881fcdfb336f30 514 TIGRFAM TIGR03712 acc_sec_asp2: accessory Sec system protein Asp2 6 514 1.4E-211 T 29-03-2018 IPR022267 Accessory Sec system protein Asp2 GO:0015031 CFE88_RS10155 ae9c2924baff1b173d881fcdfb336f30 514 Gene3D G3DSA:3.40.50.1820 276 480 0.0011 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Gene3D G3DSA:2.30.30.30 2 61 4.5E-27 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 50.629 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Gene3D G3DSA:2.40.50.140 129 184 4.7E-27 T 29-03-2018 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 SUPERFAMILY SSF50249 128 184 1.22E-17 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 29-03-2018 IPR013852 Translation elongation factor P/YeiP, conserved site CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 184 2.4E-80 T 29-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.3E-26 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 SMART SM01185 67 121 2.3E-27 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 SUPERFAMILY SSF50104 1 63 6.62E-22 T 29-03-2018 IPR008991 Translation protein SH3-like domain CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 1.9E-27 T 29-03-2018 IPR013185 Translation elongation factor, KOW-like CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 121 3.3E-23 T 29-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 SUPERFAMILY SSF50249 65 129 5.57E-21 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 PIRSF PIRSF005901 1 185 3.7E-71 T 29-03-2018 IPR020599 Translation elongation factor P/YeiP CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 SMART SM00841 129 184 2.2E-32 T 29-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CFE88_RS03620 ee314ac3e2306cdb3292f531ecaffe89 185 Gene3D G3DSA:2.40.50.140 65 126 2.7E-25 T 29-03-2018 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Gene3D G3DSA:3.30.870.10 120 320 2.1E-34 T 29-03-2018 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 SUPERFAMILY SSF56024 93 327 4.04E-54 T 29-03-2018 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Hamap MF_01916 Cardiolipin synthase. 21 494 43.256 T 29-03-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 15 494 7.6E-229 T 29-03-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 SMART SM00155 407 434 9.5E-8 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 SMART SM00155 229 256 2.9E-6 T 29-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Gene3D G3DSA:3.30.870.10 324 484 8.8E-34 T 29-03-2018 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Pfam PF13396 Phospholipase_D-nuclease N-terminal 26 68 1.9E-10 T 29-03-2018 IPR027379 Cardiolipin synthase N-terminal CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 SUPERFAMILY SSF56024 281 478 1.39E-50 T 29-03-2018 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Pfam PF13091 PLD-like domain 146 280 1.3E-13 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CFE88_RS01330 5d0985838bc9887ac5af8a2b8b0ff3d6 494 Pfam PF13091 PLD-like domain 335 461 1.6E-29 T 29-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 PIRSF PIRSF036643 1 970 0.0 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SUPERFAMILY SSF53706 251 782 5.76E-185 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF12838 4Fe-4S dicluster domain 146 204 8.4E-7 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SUPERFAMILY SSF54862 78 210 2.76E-27 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.30.70.20 195 262 0.0092 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 77 1.3E-9 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 860 887 - T 29-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.40.50.740 512 788 9.2E-75 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF00384 Molybdopterin oxidoreductase 314 737 1.6E-75 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SUPERFAMILY SSF54292 5 74 2.71E-12 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.30.70.20 152 194 2.1E-10 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 262 279 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:2.40.40.20 817 951 1.9E-20 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 84 123 1.4E-9 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 259 311 6.6E-18 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.40.228.10 418 511 1.2E-18 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.30.70.20 103 151 0.0095 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Pfam PF01568 Molydopterin dinucleotide binding domain 821 932 8.3E-18 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:2.20.25.90 263 315 2.6E-18 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 262 935 1.1E-241 T 29-03-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.10.20.30 1 102 6.7E-10 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 Gene3D G3DSA:3.40.50.740 316 417 9.3E-23 T 29-03-2018 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SMART SM00926 257 311 1.6E-16 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SMART SM00929 84 125 5.4E-12 T 29-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 190 201 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS00330 129b2407aa6a34e11c059fb1c60d517a 983 SUPERFAMILY SSF50692 794 937 5.88E-28 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 98 2.6E-7 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Gene3D G3DSA:2.40.110.10 124 219 4.1E-22 T 29-03-2018 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 218 1.3E-13 T 29-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Gene3D G3DSA:1.10.540.10 8 123 1.0E-12 T 29-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Gene3D G3DSA:1.20.140.10 220 380 1.8E-18 T 29-03-2018 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 PIRSF PIRSF016578 4 380 5.9E-36 T 29-03-2018 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 244 359 9.1E-14 T 29-03-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 SUPERFAMILY SSF56645 22 226 5.76E-44 T 29-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 CFE88_RS00455 4b35bb9233bac3afe13e74bdb1ac3956 381 SUPERFAMILY SSF47203 235 379 2.74E-24 T 29-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CFE88_RS11720 09b1947f6fb43fc42fa203242624f8d0 265 Gene3D G3DSA:3.10.180.10 67 226 1.2E-29 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS11720 09b1947f6fb43fc42fa203242624f8d0 265 Gene3D G3DSA:3.10.180.10 3 66 4.0E-7 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS11720 09b1947f6fb43fc42fa203242624f8d0 265 SUPERFAMILY SSF54593 7 166 3.16E-36 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS11720 09b1947f6fb43fc42fa203242624f8d0 265 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 14 124 1.6E-12 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS11720 09b1947f6fb43fc42fa203242624f8d0 265 SUPERFAMILY SSF54593 169 245 3.1E-14 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS08925 46ebd43a6d4eee5600435445a0095e8e 82 Gene3D G3DSA:3.40.1440.10 1 80 2.1E-10 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS08925 46ebd43a6d4eee5600435445a0095e8e 82 SUPERFAMILY SSF82771 3 74 3.14E-16 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS08925 46ebd43a6d4eee5600435445a0095e8e 82 SMART SM00465 3 82 7.5E-4 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS08925 46ebd43a6d4eee5600435445a0095e8e 82 Pfam PF01541 GIY-YIG catalytic domain 3 75 3.3E-15 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 131 1.9E-28 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 SMART SM00829 8 334 7.3E-7 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 165 193 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 Pfam PF00107 Zinc-binding dehydrogenase 172 300 6.0E-29 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 SUPERFAMILY SSF50129 1 155 4.57E-48 T 29-03-2018 IPR011032 GroES-like CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 Gene3D G3DSA:3.40.50.720 145 329 1.1E-34 T 29-03-2018 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 Gene3D G3DSA:3.90.180.10 1 144 5.1E-46 T 29-03-2018 CFE88_RS08205 3323198bbb371d5c6414c67c229d02eb 338 SUPERFAMILY SSF51735 134 304 1.28E-40 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 Gene3D G3DSA:3.30.70.60 1 98 3.6E-28 T 29-03-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 SUPERFAMILY SSF54995 1 96 1.7E-31 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 96 22.644 T 29-03-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 95 6.1E-29 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 Pfam PF01250 Ribosomal protein S6 4 93 5.6E-25 T 29-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09470 786e42233b3b33df41ef8b66fe3607ba 98 ProSitePatterns PS01048 Ribosomal protein S6 signature. 44 53 - T 29-03-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 CFE88_RS04030 b308cb42e6a2d55440920ae3f5c382d3 131 Pfam PF13456 Reverse transcriptase-like 6 123 7.5E-17 T 29-03-2018 CFE88_RS04030 b308cb42e6a2d55440920ae3f5c382d3 131 Gene3D G3DSA:3.30.420.10 1 123 5.9E-21 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS04030 b308cb42e6a2d55440920ae3f5c382d3 131 SUPERFAMILY SSF53098 2 122 1.04E-24 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 SUPERFAMILY SSF52374 5 316 2.23E-111 T 29-03-2018 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Gene3D G3DSA:1.10.10.350 386 484 1.7E-28 T 29-03-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 323 9.7E-124 T 29-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 482 3.2E-189 T 29-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 SUPERFAMILY SSF48163 298 482 6.67E-48 T 29-03-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 8.5E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 218 8.5E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 8.5E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 8.5E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 204 8.5E-27 T 29-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Gene3D G3DSA:3.40.50.620 137 246 8.7E-29 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 4 484 34.034 T 29-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Gene3D G3DSA:1.10.1160.10 247 333 3.0E-31 T 29-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Gene3D G3DSA:1.10.8.70 335 382 2.0E-4 T 29-03-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 Gene3D G3DSA:3.40.50.620 5 136 1.6E-35 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08640 5bd438af0873e41b1f622bacc0a9ce51 484 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS01915 e7db10cdd2fe7d88f62c7a0431967396 392 Pfam PF03631 Virulence factor BrkB 77 331 1.7E-71 T 29-03-2018 IPR017039 Virulence factor BrkB CFE88_RS01915 e7db10cdd2fe7d88f62c7a0431967396 392 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 66 330 5.5E-50 T 29-03-2018 IPR017039 Virulence factor BrkB CFE88_RS01915 e7db10cdd2fe7d88f62c7a0431967396 392 PIRSF PIRSF035875 49 352 2.0E-99 T 29-03-2018 IPR017039 Virulence factor BrkB CFE88_RS12010 91ffc0b49546c5247d834725c41c14e9 211 SUPERFAMILY SSF161098 11 195 6.41E-37 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS12010 91ffc0b49546c5247d834725c41c14e9 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 205 1.5E-23 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS12010 91ffc0b49546c5247d834725c41c14e9 211 Gene3D G3DSA:1.10.3720.10 2 207 1.4E-28 T 29-03-2018 CFE88_RS02465 58b9a8d68d94ba8b9768954483516a03 237 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 8 209 1.1E-35 T 29-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 CFE88_RS02465 58b9a8d68d94ba8b9768954483516a03 237 SUPERFAMILY SSF51569 6 231 1.71E-47 T 29-03-2018 CFE88_RS02465 58b9a8d68d94ba8b9768954483516a03 237 TIGRFAM TIGR02134 transald_staph: transaldolase 1 237 1.1E-126 T 29-03-2018 IPR011861 Transaldolase, Staphylococcus-type CFE88_RS02465 58b9a8d68d94ba8b9768954483516a03 237 Gene3D G3DSA:3.20.20.70 6 233 1.8E-48 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 Gene3D G3DSA:3.20.20.70 6 344 1.7E-70 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 PIRSF PIRSF003314 3 343 8.6E-125 T 29-03-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 Pfam PF01070 FMN-dependent dehydrogenase 165 327 9.1E-18 T 29-03-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 SUPERFAMILY SSF51395 26 345 4.17E-81 T 29-03-2018 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 8 332 2.5E-125 T 29-03-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 CFE88_RS00145 d200c47a2702c59c656838d7497482c2 349 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 6 333 36.72 T 29-03-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Gene3D G3DSA:3.90.1150.10 280 365 7.7E-10 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Gene3D G3DSA:3.90.100.10 366 446 8.3E-19 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 SUPERFAMILY SSF55904 308 439 4.71E-25 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Gene3D G3DSA:3.40.640.10 3 267 4.2E-23 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 299 332 1.6E-4 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 4 261 4.4E-38 T 29-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 SUPERFAMILY SSF53383 4 338 2.9E-57 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS08960 e7065232f423e3a102feafb9ad42c49a 446 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 367 437 1.4E-10 T 29-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 Gene3D G3DSA:3.40.50.300 1 252 2.3E-74 T 29-03-2018 CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 SUPERFAMILY SSF52540 1 240 1.73E-81 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 SMART SM00930 262 338 1.9E-24 T 29-03-2018 IPR018449 NIL domain CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 Pfam PF00005 ABC transporter 22 169 2.6E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 Gene3D G3DSA:3.30.70.260 253 340 1.4E-19 T 29-03-2018 CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 SMART SM00382 30 218 1.7E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 Pfam PF09383 NIL domain 265 337 5.9E-18 T 29-03-2018 IPR018449 NIL domain CFE88_RS06990 959952c79fa654d2f451d311c410090e 341 SUPERFAMILY SSF55021 248 340 5.04E-22 T 29-03-2018 CFE88_RS12345 2e5e80769b155f01a95ac2958cd56b48 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 8.7E-20 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12345 2e5e80769b155f01a95ac2958cd56b48 83 SUPERFAMILY SSF143120 1 80 6.54E-22 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12345 2e5e80769b155f01a95ac2958cd56b48 83 Gene3D G3DSA:3.40.1620.10 1 39 1.4E-13 T 29-03-2018 CFE88_RS12390 2e5e80769b155f01a95ac2958cd56b48 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 8.7E-20 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12390 2e5e80769b155f01a95ac2958cd56b48 83 SUPERFAMILY SSF143120 1 80 6.54E-22 T 29-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CFE88_RS12390 2e5e80769b155f01a95ac2958cd56b48 83 Gene3D G3DSA:3.40.1620.10 1 39 1.4E-13 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Gene3D G3DSA:2.30.38.10 281 349 1.7E-9 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Gene3D G3DSA:3.30.300.30 351 452 9.0E-16 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Gene3D G3DSA:3.40.50.980 111 133 0.0098 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Pfam PF00501 AMP-binding enzyme 9 356 7.6E-40 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Gene3D G3DSA:3.40.50.980 134 280 2.1E-18 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 ProSitePatterns PS00455 Putative AMP-binding domain signature. 128 139 - T 29-03-2018 IPR020845 AMP-binding, conserved site CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 Gene3D G3DSA:3.40.50.980 1 110 1.1E-11 T 29-03-2018 CFE88_RS08380 c3a93d9fe58fd9b2560a79d81ef1cd41 453 SUPERFAMILY SSF56801 4 450 1.44E-73 T 29-03-2018 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 SUPERFAMILY SSF102114 24 289 1.07E-62 T 29-03-2018 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 294 2.1E-121 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 SMART SM00729 58 267 8.5E-16 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 5 46 2.7E-11 T 29-03-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 Gene3D G3DSA:3.20.20.70 3 289 2.1E-25 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 Pfam PF04055 Radical SAM superfamily 65 225 1.7E-13 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 PIRSF PIRSF005963 1 304 7.8E-137 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CFE88_RS06900 6ec3564f873fefb8a5b9a6d00b42ba0e 304 Hamap MF_00206 Lipoyl synthase [lipA]. 1 297 148.343 T 29-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 Gene3D G3DSA:1.10.10.10 118 224 3.4E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 SUPERFAMILY SSF46894 125 221 1.16E-22 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 SMART SM00448 1 111 1.1E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 SUPERFAMILY SSF52172 1 117 3.7E-33 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 Pfam PF00072 Response regulator receiver domain 3 111 7.1E-23 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 SMART SM00862 147 222 6.6E-17 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 221 4.6E-21 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS07955 75c1b4b8c74ebd5fae1616648f1eefe9 224 Gene3D G3DSA:3.40.50.2300 1 117 3.1E-28 T 29-03-2018 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 SUPERFAMILY SSF52096 11 193 6.75E-75 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 29-03-2018 IPR033135 ClpP, histidine active site CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.138 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 8.6E-55 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 8.6E-55 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 8.6E-55 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 8.6E-55 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 8.6E-55 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 Gene3D G3DSA:3.90.226.10 2 194 2.0E-46 T 29-03-2018 CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 29-03-2018 IPR018215 ClpP, Ser active site CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 Pfam PF00574 Clp protease 13 192 2.0E-89 T 29-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CFE88_RS07330 bb650d3fdf9d97900b3d96efb82043b7 194 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 190 4.5E-104 T 29-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 Gene3D G3DSA:3.30.450.40 2 169 7.1E-17 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 Gene3D G3DSA:3.30.565.10 170 370 1.5E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 SMART SM00387 277 371 1.9E-5 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 SUPERFAMILY SSF55874 245 369 5.89E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 Pfam PF07730 Histidine kinase 180 244 1.3E-19 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 SUPERFAMILY SSF55781 30 174 4.58E-18 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 370 5.2E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02240 98d2cac2c22a23acfb1446ec48ab1881 377 Pfam PF13185 GAF domain 20 163 7.6E-14 T 29-03-2018 IPR003018 GAF domain GO:0005515 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 Pfam PF01026 TatD related DNase 3 254 1.6E-82 T 29-03-2018 IPR001130 TatD family GO:0016788 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 29-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 Gene3D G3DSA:3.20.20.140 1 256 3.4E-89 T 29-03-2018 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 3.2E-90 T 29-03-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 PIRSF PIRSF005902 1 256 1.8E-81 T 29-03-2018 IPR001130 TatD family GO:0016788 CFE88_RS08910 9c013108c4a3b394b157362c6756fbd9 256 SUPERFAMILY SSF51556 2 255 1.32E-89 T 29-03-2018 IPR032466 Metal-dependent hydrolase CFE88_RS07365 faab1f75b9ed41136163037b00a24b45 178 Gene3D G3DSA:2.160.10.10 8 176 2.6E-26 T 29-03-2018 CFE88_RS07365 faab1f75b9ed41136163037b00a24b45 178 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CFE88_RS07365 faab1f75b9ed41136163037b00a24b45 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 143 4.4E-10 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS07365 faab1f75b9ed41136163037b00a24b45 178 SUPERFAMILY SSF51161 16 159 1.8E-31 T 29-03-2018 IPR011004 Trimeric LpxA-like CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 Pfam PF01047 MarR family 36 93 9.7E-13 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 SUPERFAMILY SSF46785 11 138 3.15E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 SMART SM00347 29 127 3.1E-16 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 Gene3D G3DSA:1.10.10.10 5 138 7.6E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 9.3E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 9.3E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS12250 fd6f502d25430d13ee85ce8b762ff7f7 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 9.3E-6 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 SUPERFAMILY SSF50249 556 653 3.67E-29 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 24 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Gene3D G3DSA:3.40.50.620 3 355 4.1E-101 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 SUPERFAMILY SSF52374 3 358 2.95E-112 T 29-03-2018 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 533 655 1.7E-40 T 29-03-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Pfam PF08264 Anticodon-binding domain of tRNA 397 542 5.8E-8 T 29-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 496 1.3E-170 T 29-03-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Gene3D G3DSA:1.10.730.10 356 524 1.4E-39 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 SUPERFAMILY SSF47323 361 569 8.04E-43 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 519 50.463 T 29-03-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Gene3D G3DSA:2.40.50.140 548 656 5.9E-28 T 29-03-2018 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Pfam PF09334 tRNA synthetases class I (M) 6 371 7.1E-116 T 29-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 Pfam PF01588 Putative tRNA binding domain 563 653 1.5E-25 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 234 245 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 267 282 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 359 370 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS08915 3aa8a4d381360c02842e1cfcc9d73345 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 8 21 3.0E-31 T 29-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 Pfam PF13361 UvrD-like helicase C-terminal domain 276 613 7.6E-80 T 29-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 Gene3D G3DSA:3.40.50.300 1 126 2.5E-29 T 29-03-2018 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 SUPERFAMILY SSF52540 3 640 1.08E-182 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 4 723 0.0 T 29-03-2018 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 Gene3D G3DSA:1.10.10.160 127 186 4.2E-23 T 29-03-2018 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 Gene3D G3DSA:3.40.50.300 200 676 5.6E-95 T 29-03-2018 CFE88_RS01805 2fff4fb638ee80b8e50b795a3cb85f68 729 Pfam PF00580 UvrD/REP helicase N-terminal domain 8 270 1.5E-86 T 29-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 SUPERFAMILY SSF52540 72 360 7.36E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 SMART SM00490 258 339 1.2E-28 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 Hamap MF_01494 DEAD-box ATP-dependent RNA helicase CshB [cshB]. 4 438 45.715 T 29-03-2018 IPR030881 DEAD-box ATP-dependent RNA helicase CshB GO:0004386|GO:0009409 CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 Gene3D G3DSA:3.40.50.300 7 220 3.7E-45 T 29-03-2018 CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 Pfam PF00270 DEAD/DEAH box helicase 28 193 1.5E-38 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 Gene3D G3DSA:3.40.50.300 221 448 2.2E-44 T 29-03-2018 CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 SMART SM00487 23 222 6.4E-45 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS03460 0356896e829f9fe9f10794f0e27ef048 448 Pfam PF00271 Helicase conserved C-terminal domain 234 339 1.8E-26 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 192 1.3E-11 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 SUPERFAMILY SSF51735 98 277 2.03E-44 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 Gene3D G3DSA:3.40.50.720 110 280 2.6E-40 T 29-03-2018 CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 Gene3D G3DSA:3.40.50.720 1 109 8.2E-16 T 29-03-2018 CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 277 7.4E-48 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS02020 19bf33a8e23c1b599f6648213616aa5f 316 SUPERFAMILY SSF52283 14 112 1.7E-13 T 29-03-2018 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 29-03-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 293 4.6E-20 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 SUPERFAMILY SSF54782 219 305 3.14E-22 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 SUPERFAMILY SSF53850 2 216 6.51E-77 T 29-03-2018 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.7E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.7E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 1.7E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.7E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.7E-49 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 3.0E-105 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Gene3D G3DSA:3.40.190.10 105 198 1.7E-33 T 29-03-2018 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Gene3D G3DSA:3.30.160.40 220 304 6.1E-19 T 29-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 37.581 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Gene3D G3DSA:3.40.190.10 1 104 1.2E-38 T 29-03-2018 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 211 3.3E-73 T 29-03-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS02960 f122028f5647dbf8f702614869db9729 308 PIRSF PIRSF001438 1 308 1.3E-113 T 29-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 579 2.2E-79 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SUPERFAMILY SSF54184 657 711 2.35E-13 T 29-03-2018 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Gene3D G3DSA:3.40.710.10 240 590 7.5E-70 T 29-03-2018 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 224 1.2E-22 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SUPERFAMILY SSF54184 599 655 1.83E-15 T 29-03-2018 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Pfam PF03793 PASTA domain 659 712 2.9E-8 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Pfam PF03793 PASTA domain 601 652 1.4E-5 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SUPERFAMILY SSF56601 195 602 4.51E-77 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 Gene3D G3DSA:3.90.1310.10 27 239 2.1E-39 T 29-03-2018 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SUPERFAMILY SSF56519 61 242 9.42E-45 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SMART SM00740 657 713 9.4E-4 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05540 c3cc643d759740fe0a029ba75f127eee 775 SMART SM00740 596 656 6.9E-8 T 29-03-2018 IPR005543 PASTA domain CFE88_RS08310 f00a1828281aa89551dcbb237bda7bd6 249 Gene3D G3DSA:3.30.70.1100 140 245 3.2E-28 T 29-03-2018 CFE88_RS08310 f00a1828281aa89551dcbb237bda7bd6 249 Pfam PF06778 Chlorite dismutase 33 237 1.4E-76 T 29-03-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase CFE88_RS08310 f00a1828281aa89551dcbb237bda7bd6 249 Hamap MF_01442 Putative heme-dependent peroxidase . 1 249 56.47 T 29-03-2018 IPR031332 Putative heme-dependent peroxidase, UPF0447 family CFE88_RS08310 f00a1828281aa89551dcbb237bda7bd6 249 Gene3D G3DSA:3.30.70.1030 4 137 8.0E-38 T 29-03-2018 CFE88_RS08310 f00a1828281aa89551dcbb237bda7bd6 249 SUPERFAMILY SSF54909 1 248 5.9E-90 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 Pfam PF00137 ATP synthase subunit C 4 66 7.7E-15 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 Gene3D G3DSA:1.20.20.10 1 69 1.4E-20 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 Hamap MF_01396 ATP synthase subunit c [atpH]. 3 68 15.869 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 SUPERFAMILY SSF81333 3 67 1.83E-19 T 29-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 PRINTS PR00124 ATP synthase C subunit signature 43 68 2.4E-19 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 PRINTS PR00124 ATP synthase C subunit signature 5 24 2.4E-19 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 PRINTS PR00124 ATP synthase C subunit signature 26 41 2.4E-19 T 29-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 ProSitePatterns PS00605 ATP synthase c subunit signature. 33 54 - T 29-03-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01235 f67a9b28556d32703660b28788b75d2c 70 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 14 68 2.2E-21 T 29-03-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 SUPERFAMILY SSF55804 1 148 5.1E-42 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 182 264 8.7E-32 T 29-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 182 271 2.8E-17 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 Pfam PF02378 Phosphotransferase system, EIIC 309 578 4.1E-18 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 Gene3D G3DSA:3.40.930.10 1 162 2.8E-45 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 SUPERFAMILY SSF52794 180 276 2.27E-36 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 29-03-2018 IPR002178 PTS EIIA type-2 domain CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 133 4.2E-37 T 29-03-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 Gene3D G3DSA:3.40.50.2300 179 275 4.4E-39 T 29-03-2018 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 300 633 1.0E-120 T 29-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 CFE88_RS07730 7f37bc1f1f410b0db6467cdf0e39eb76 649 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 148 6.8E-41 T 29-03-2018 IPR002178 PTS EIIA type-2 domain CFE88_RS05055 dacdb13ecc24cab68d1d7b298403a8cc 393 Gene3D G3DSA:3.30.830.10 201 387 5.9E-27 T 29-03-2018 CFE88_RS05055 dacdb13ecc24cab68d1d7b298403a8cc 393 Pfam PF05193 Peptidase M16 inactive domain 152 325 1.5E-27 T 29-03-2018 IPR007863 Peptidase M16, C-terminal CFE88_RS05055 dacdb13ecc24cab68d1d7b298403a8cc 393 SUPERFAMILY SSF63411 15 196 1.3E-20 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CFE88_RS05055 dacdb13ecc24cab68d1d7b298403a8cc 393 SUPERFAMILY SSF63411 213 390 6.86E-30 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CFE88_RS05055 dacdb13ecc24cab68d1d7b298403a8cc 393 Gene3D G3DSA:3.30.830.10 10 194 4.0E-22 T 29-03-2018 CFE88_RS06580 77feb4251b0e6f517f0440486f2713f3 328 Pfam PF06054 Competence protein CoiA-like family 1 188 9.1E-29 T 29-03-2018 IPR010330 Competence-induced protein CoiA-like CFE88_RS06580 77feb4251b0e6f517f0440486f2713f3 328 PIRSF PIRSF007487 1 328 5.3E-81 T 29-03-2018 IPR021176 Competence-induced protein CoiA CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 SMART SM00876 229 319 2.7E-37 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 Hamap MF_01694 Biotin synthase [bioB]. 13 320 39.388 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 PIRSF PIRSF001619 1 321 4.9E-124 T 29-03-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 229 318 2.0E-17 T 29-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 TIGRFAM TIGR00433 bioB: biotin synthase 28 318 3.6E-114 T 29-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 Gene3D G3DSA:3.20.20.70 12 321 1.6E-46 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 Pfam PF04055 Radical SAM superfamily 62 217 1.3E-13 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 SUPERFAMILY SSF102114 14 318 8.89E-69 T 29-03-2018 CFE88_RS10445 47235baae903a52e15ed9f653c2e0c48 321 SMART SM00729 53 261 1.1E-34 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 Hamap MF_00152 Probable endonuclease 4 [nfo]. 1 284 42.553 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 68 76 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 SUPERFAMILY SSF51658 1 294 3.67E-102 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 Pfam PF01261 Xylose isomerase-like TIM barrel 20 236 1.4E-39 T 29-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 Gene3D G3DSA:3.20.20.150 1 296 1.1E-57 T 29-03-2018 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 281 1.0E-96 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 212 228 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 174 181 - T 29-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CFE88_RS03465 74fc592dd3c356e1e85dc5472cf2a150 296 SMART SM00518 2 284 3.6E-121 T 29-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 SUPERFAMILY SSF53790 5 236 2.09E-63 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 Gene3D G3DSA:3.30.950.10 132 251 8.0E-20 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 Gene3D G3DSA:3.40.1010.10 6 131 1.9E-35 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 87 120 - T 29-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 7 239 1.6E-82 T 29-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS12200 c4f4465c5016e22c1fd06ac343c37a05 311 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 217 2.8E-45 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 Gene3D G3DSA:3.40.1400.10 1 142 2.8E-40 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 PIRSF PIRSF005384 1 142 7.7E-42 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 SUPERFAMILY SSF89623 1 141 5.62E-44 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 Hamap MF_01555 Galactose-6-phosphate isomerase subunit LacA [lacA]. 1 142 40.931 T 29-03-2018 IPR004783 Galactose-6-phosphate isomerase subunit LacA GO:0005990|GO:0050044 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 Pfam PF02502 Ribose/Galactose Isomerase 3 138 6.2E-39 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 TIGRFAM TIGR01118 lacA: galactose-6-phosphate isomerase, LacA subunit 1 141 7.0E-80 T 29-03-2018 IPR004783 Galactose-6-phosphate isomerase subunit LacA GO:0005990|GO:0050044 KEGG: 00052+5.3.1.26 CFE88_RS00795 efca303518d43c6f4f40f865933f99cd 142 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 140 6.4E-32 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 Gene3D G3DSA:1.10.1240.30 2 80 2.1E-14 T 29-03-2018 IPR017944 KaiA/RbsU helical domain GO:0006468 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 Pfam PF08673 Phosphoserine phosphatase RsbU, N-terminal domain 6 79 1.9E-19 T 29-03-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 SUPERFAMILY SSF101215 2 81 4.84E-24 T 29-03-2018 IPR017944 KaiA/RbsU helical domain GO:0006468 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 SMART SM00332 91 329 5.9E-6 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 SUPERFAMILY SSF81606 128 330 2.09E-12 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 Gene3D G3DSA:3.60.40.10 82 332 2.1E-30 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 SMART SM00331 116 331 1.2E-70 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 143 331 1.1E-46 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS01405 5ee8b4e23624b2cbb9a446802abc21c9 333 ProDom PD685490 RSBU REGULATOR SIGMA REGULATION FACTOR B PHOSPHATASE SIGMAB INDIRECT SIGMA-B 1 90 6.0E-44 T 29-03-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 CFE88_RS02905 52e1676702d224b5d7833a45dfde7449 500 PIRSF PIRSF006060 9 499 2.8E-82 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS02905 52e1676702d224b5d7833a45dfde7449 500 Pfam PF00324 Amino acid permease 19 477 1.5E-132 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS02905 52e1676702d224b5d7833a45dfde7449 500 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 Pfam PF00361 Proton-conducting membrane transporter 128 428 3.5E-63 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 152 173 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 435 454 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 308 320 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 105 125 1.7E-41 T 29-03-2018 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 115 2.4E-12 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 Pfam PF13244 Domain of unknown function (DUF4040) 630 694 1.5E-20 T 29-03-2018 IPR025383 Domain of unknown function DUF4040 CFE88_RS06760 fe135a6c045ba867ffac44ff0c9d46cc 801 TIGRFAM TIGR00940 2a6301s01: monovalent cation:proton antiporter 4 793 0.0 T 29-03-2018 IPR005663 Monovalent cation proton antiporter subunit A GO:0015077|GO:0030004 CFE88_RS04415 2a32fe7b1c71b4e98378fb2ff766396f 64 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 4 62 2.1E-23 T 29-03-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 CFE88_RS04415 2a32fe7b1c71b4e98378fb2ff766396f 64 SUPERFAMILY SSF55331 5 63 6.94E-18 T 29-03-2018 IPR014347 Tautomerase/MIF superfamily CFE88_RS04415 2a32fe7b1c71b4e98378fb2ff766396f 64 Gene3D G3DSA:3.30.429.10 2 64 7.0E-18 T 29-03-2018 CFE88_RS04415 2a32fe7b1c71b4e98378fb2ff766396f 64 Pfam PF01361 Tautomerase enzyme 5 63 1.4E-22 T 29-03-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 233 252 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 14 32 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 329 347 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 60 80 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 274 296 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 127 152 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PRINTS PR00303 Preprotein translocase SecY subunit signature 153 176 9.7E-26 T 29-03-2018 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 TIGRFAM TIGR02920 acc_sec_Y2: accessory Sec system translocase SecY2 9 394 1.5E-134 T 29-03-2018 IPR014269 Accessory Sec system protein translocase subunit SecY2 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 Pfam PF00344 SecY translocase 62 376 1.1E-42 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 Hamap MF_01466 Accessory Sec system protein translocase subunit SecY2 [secY2]. 2 394 27.142 T 29-03-2018 IPR014269 Accessory Sec system protein translocase subunit SecY2 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 SUPERFAMILY SSF103491 5 384 7.72E-62 T 29-03-2018 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 PIRSF PIRSF004557 1 397 4.0E-66 T 29-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CFE88_RS10145 182d0da2d92635857d7f860f074cb2b1 397 Gene3D G3DSA:1.10.3370.10 3 397 1.1E-62 T 29-03-2018 CFE88_RS07045 c02f3e39256d87aa5a218785c3e92bec 166 SUPERFAMILY SSF55729 3 159 2.78E-13 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07045 c02f3e39256d87aa5a218785c3e92bec 166 Pfam PF13420 Acetyltransferase (GNAT) domain 4 156 1.4E-41 T 29-03-2018 CFE88_RS07045 c02f3e39256d87aa5a218785c3e92bec 166 Gene3D G3DSA:3.40.630.30 95 165 4.3E-8 T 29-03-2018 CFE88_RS07045 c02f3e39256d87aa5a218785c3e92bec 166 Gene3D G3DSA:3.40.630.30 3 88 5.8E-4 T 29-03-2018 CFE88_RS09085 35b811b96beaeba15a2ffeb2582348a1 302 Gene3D G3DSA:3.40.50.1100 130 296 8.3E-40 T 29-03-2018 CFE88_RS09085 35b811b96beaeba15a2ffeb2582348a1 302 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 28 46 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CFE88_RS09085 35b811b96beaeba15a2ffeb2582348a1 302 Gene3D G3DSA:3.40.50.1100 18 129 2.9E-32 T 29-03-2018 CFE88_RS09085 35b811b96beaeba15a2ffeb2582348a1 302 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 6 282 2.6E-59 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS09085 35b811b96beaeba15a2ffeb2582348a1 302 SUPERFAMILY SSF53686 4 294 1.11E-80 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS00625 ff415f255bedd5ad959f72c8c8b2b15c 91 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 91 19.955 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00625 ff415f255bedd5ad959f72c8c8b2b15c 91 Gene3D G3DSA:3.30.70.330 1 91 2.6E-30 T 29-03-2018 CFE88_RS00625 ff415f255bedd5ad959f72c8c8b2b15c 91 Pfam PF00276 Ribosomal protein L23 5 86 3.4E-31 T 29-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00625 ff415f255bedd5ad959f72c8c8b2b15c 91 SUPERFAMILY SSF54189 1 86 9.71E-30 T 29-03-2018 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS04610 47a9ad0631af0bdbc39178b34dc23bdf 181 SUPERFAMILY SSF50199 50 181 9.55E-39 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CFE88_RS04610 47a9ad0631af0bdbc39178b34dc23bdf 181 ProSitePatterns PS01284 Thermonuclease family signature 2. 123 133 - T 29-03-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 CFE88_RS04610 47a9ad0631af0bdbc39178b34dc23bdf 181 Gene3D G3DSA:2.40.50.90 44 181 2.0E-37 T 29-03-2018 IPR035437 Staphylococcal nuclease (SNase-like), OB-fold/extended TUDOR domain CFE88_RS04610 47a9ad0631af0bdbc39178b34dc23bdf 181 Pfam PF00565 Staphylococcal nuclease homologue 75 181 4.1E-34 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CFE88_RS04610 47a9ad0631af0bdbc39178b34dc23bdf 181 SMART SM00318 50 181 1.1E-43 T 29-03-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CFE88_RS06020 c85408314e00176627188c17092cc28d 234 Gene3D G3DSA:3.30.200.20 1 90 8.6E-26 T 29-03-2018 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 Pfam PF01259 SAICAR synthetase 4 225 6.0E-63 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 SUPERFAMILY SSF56104 2 231 4.9E-75 T 29-03-2018 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 ProSitePatterns PS01057 SAICAR synthetase signature 1. 83 97 - T 29-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 1 232 30.641 T 29-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 214 6.7E-66 T 29-03-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 CFE88_RS06020 c85408314e00176627188c17092cc28d 234 Gene3D G3DSA:3.30.470.20 91 218 1.3E-49 T 29-03-2018 CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 Gene3D G3DSA:1.10.10.10 116 191 1.5E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 Gene3D G3DSA:1.10.1740.10 14 97 6.3E-17 T 29-03-2018 CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 Pfam PF04542 Sigma-70 region 2 30 97 1.1E-12 T 29-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 SUPERFAMILY SSF46894 129 187 8.93E-7 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 SUPERFAMILY SSF88946 19 110 2.04E-17 T 29-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS08610 ee8f3e7c143e4113ff1b033b2e7afa72 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 188 1.8E-16 T 29-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS06495 8fc98ed435c41298089271b7479f14ad 215 Pfam PF15604 Novel toxin 15 68 214 1.4E-33 T 29-03-2018 IPR028949 Novel toxin 15 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 TIGRFAM TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase 3 384 4.1E-158 T 29-03-2018 IPR011554 Hydroxymethylglutaryl-CoA synthase, prokaryotic KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 SUPERFAMILY SSF53901 169 386 7.68E-70 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 Gene3D G3DSA:3.40.47.10 6 175 1.0E-11 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 Pfam PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 164 2.4E-19 T 29-03-2018 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal GO:0004421|GO:0008299 Reactome: R-HSA-1989781 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 Pfam PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal 254 382 5.4E-17 T 29-03-2018 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain GO:0004421|GO:0008299 KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922|Reactome: R-HSA-1989781 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 Pfam PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal 177 248 8.0E-11 T 29-03-2018 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain GO:0004421|GO:0008299 KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922|Reactome: R-HSA-1989781 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 SUPERFAMILY SSF53901 2 166 7.3E-44 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS11535 0aee6d1ad9ba6aae1b742686167d07c0 388 Gene3D G3DSA:3.40.47.10 176 319 2.8E-45 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS12045 7d4b98eae47c455c9562f9f2d1da4170 466 SUPERFAMILY SSF103473 6 195 2.49E-53 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12045 7d4b98eae47c455c9562f9f2d1da4170 466 SUPERFAMILY SSF103473 253 462 2.49E-53 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12045 7d4b98eae47c455c9562f9f2d1da4170 466 Pfam PF07690 Major Facilitator Superfamily 26 416 1.8E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS12045 7d4b98eae47c455c9562f9f2d1da4170 466 Gene3D G3DSA:1.20.1250.20 264 465 2.6E-23 T 29-03-2018 CFE88_RS12045 7d4b98eae47c455c9562f9f2d1da4170 466 Gene3D G3DSA:1.20.1250.20 6 201 8.0E-26 T 29-03-2018 CFE88_RS12150 0c79eb1070625d60e447ed3a3f266840 198 Gene3D G3DSA:3.40.30.10 26 197 4.4E-29 T 29-03-2018 CFE88_RS12150 0c79eb1070625d60e447ed3a3f266840 198 SUPERFAMILY SSF52833 24 195 1.06E-31 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS12150 0c79eb1070625d60e447ed3a3f266840 198 Pfam PF13462 Thioredoxin 31 195 1.1E-26 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS12150 0c79eb1070625d60e447ed3a3f266840 198 ProSitePatterns PS00195 Glutaredoxin active site. 38 54 - T 29-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 SUPERFAMILY SSF89919 1 111 4.19E-36 T 29-03-2018 IPR023799 Ribosome-binding factor A domain CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 Pfam PF02033 Ribosome-binding factor A 5 108 9.7E-34 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 ProSitePatterns PS01319 Ribosome-binding factor A signature. 74 95 - T 29-03-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 1 115 24.595 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 Gene3D G3DSA:3.30.300.20 3 115 4.1E-35 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 113 1.8E-39 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 CFE88_RS05095 7310a983f2fbfa66e92204bbb4b611f3 116 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 7 95 2.0E-46 T 29-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 CFE88_RS02800 d335054c8abe031df4acd90255e8949d 312 SUPERFAMILY SSF64182 16 308 1.02E-70 T 29-03-2018 CFE88_RS02800 d335054c8abe031df4acd90255e8949d 312 Pfam PF01368 DHH family 18 155 4.5E-15 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS02800 d335054c8abe031df4acd90255e8949d 312 Gene3D G3DSA:3.90.1640.10 2 199 6.5E-44 T 29-03-2018 CFE88_RS02800 d335054c8abe031df4acd90255e8949d 312 Pfam PF02272 DHHA1 domain 184 310 4.9E-11 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 SUPERFAMILY SSF46785 1 85 1.8E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 SUPERFAMILY SSF53850 90 274 2.97E-13 T 29-03-2018 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 Gene3D G3DSA:3.40.190.10 94 201 2.6E-10 T 29-03-2018 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.2E-9 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 Gene3D G3DSA:1.10.10.10 1 93 5.3E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 Pfam PF03466 LysR substrate binding domain 89 270 2.5E-10 T 29-03-2018 IPR005119 LysR, substrate-binding CFE88_RS09030 1b39018eda97973e5316f4cd5c63e047 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 8.2E-21 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Gene3D G3DSA:3.40.50.970 1 192 1.5E-49 T 29-03-2018 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Gene3D G3DSA:3.40.50.970 347 552 2.8E-41 T 29-03-2018 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 8 545 2.4E-287 T 29-03-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 SUPERFAMILY SSF52518 366 545 4.0E-60 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 SUPERFAMILY SSF52467 185 356 1.16E-33 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Gene3D G3DSA:3.40.50.1220 193 346 8.2E-25 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 425 444 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 534 5.9E-44 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 325 2.5E-25 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 174 2.5E-50 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CFE88_RS11375 ad2930fc25128a5c9370b12e92a67e6c 554 SUPERFAMILY SSF52518 5 176 9.49E-48 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS02525 be0bc6bc403867d00cd9445eb39eed3a 333 Gene3D G3DSA:3.20.20.220 9 313 2.8E-60 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like CFE88_RS02525 be0bc6bc403867d00cd9445eb39eed3a 333 Pfam PF01619 Proline dehydrogenase 44 294 1.4E-28 T 29-03-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 CFE88_RS02525 be0bc6bc403867d00cd9445eb39eed3a 333 SUPERFAMILY SSF51730 36 299 4.71E-65 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like CFE88_RS02525 be0bc6bc403867d00cd9445eb39eed3a 333 PIRSF PIRSF000196 1 305 1.6E-127 T 29-03-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 SUPERFAMILY SSF52540 3 303 1.29E-88 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Gene3D G3DSA:3.40.50.300 1 80 2.7E-7 T 29-03-2018 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 44.801 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 5.1E-40 T 29-03-2018 IPR013029 Domain of unknown function DUF933 Reactome: R-HSA-114608 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Gene3D G3DSA:1.10.150.300 110 200 2.5E-31 T 29-03-2018 IPR023192 TGS-like domain Reactome: R-HSA-114608 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 365 3.6E-155 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 SUPERFAMILY SSF81271 281 362 1.07E-36 T 29-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-34 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Gene3D G3DSA:3.10.20.30 265 364 1.8E-45 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 Pfam PF01926 50S ribosome-binding GTPase 5 115 7.7E-23 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09485 cc213f33b64df81dd17ffeeaa06c5310 365 PIRSF PIRSF006641 1 365 7.8E-162 T 29-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 SUPERFAMILY SSF116842 2 67 9.02E-21 T 29-03-2018 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 PIRSF PIRSF006488 1 76 3.3E-22 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 7 67 15.561 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 7 63 1.9E-23 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 Gene3D G3DSA:1.10.287.1040 5 73 8.8E-23 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 5.0E-21 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03670 80d1985f081278e8a706c2b7f7b0e8bd 76 Pfam PF02609 Exonuclease VII small subunit 8 58 9.4E-21 T 29-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 SUPERFAMILY SSF46689 4 74 5.91E-19 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 76 1.6E-17 T 29-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 Gene3D G3DSA:3.40.50.10490 72 251 7.8E-21 T 29-03-2018 CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 Gene3D G3DSA:1.10.10.10 3 71 1.4E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 Pfam PF01380 SIS domain 111 219 5.4E-17 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS00245 08acbb0a2b77b71060168b303afb41cc 253 SUPERFAMILY SSF53697 85 247 3.56E-22 T 29-03-2018 CFE88_RS04320 f8f4ecc3fcd44f5c759be3feeeba1940 333 SUPERFAMILY SSF161098 94 293 1.05E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04320 f8f4ecc3fcd44f5c759be3feeeba1940 333 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 307 2.8E-42 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04320 f8f4ecc3fcd44f5c759be3feeeba1940 333 Gene3D G3DSA:1.10.3720.10 3 296 6.4E-39 T 29-03-2018 CFE88_RS04295 e16e39c6be1f23b2bad6a18587721b3c 301 Gene3D G3DSA:1.10.3720.10 32 301 7.1E-44 T 29-03-2018 CFE88_RS04295 e16e39c6be1f23b2bad6a18587721b3c 301 SUPERFAMILY SSF161098 30 293 5.14E-41 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04295 e16e39c6be1f23b2bad6a18587721b3c 301 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 34 298 7.1E-90 T 29-03-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CFE88_RS04295 e16e39c6be1f23b2bad6a18587721b3c 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 300 3.7E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 1.2E-6 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 120 150 8.2E-9 T 29-03-2018 IPR001451 Hexapeptide repeat CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 165 1.8E-75 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 126 154 - T 29-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 Gene3D G3DSA:1.10.3130.10 1 59 1.3E-22 T 29-03-2018 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 Gene3D G3DSA:2.160.10.10 60 213 1.1E-39 T 29-03-2018 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 PIRSF PIRSF000441 1 211 8.4E-83 T 29-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 CFE88_RS08635 4855d586c6fb2f3bac37ae460ae3c7d2 213 SUPERFAMILY SSF51161 4 170 2.5E-54 T 29-03-2018 IPR011004 Trimeric LpxA-like CFE88_RS10410 ed8f2fc9a7bcd95c08bb34fc920d89a8 255 SUPERFAMILY SSF53474 2 250 9.54E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10410 ed8f2fc9a7bcd95c08bb34fc920d89a8 255 Gene3D G3DSA:3.40.50.1820 3 253 5.7E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10410 ed8f2fc9a7bcd95c08bb34fc920d89a8 255 Pfam PF00756 Putative esterase 10 243 1.5E-17 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CFE88_RS09345 e9e9f8258e426835432dd188db39f21b 259 Gene3D G3DSA:3.90.850.10 1 259 4.6E-26 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CFE88_RS09345 e9e9f8258e426835432dd188db39f21b 259 SUPERFAMILY SSF56529 4 257 3.53E-52 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 SUPERFAMILY SSF55920 136 356 2.09E-75 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 Pfam PF01321 Creatinase/Prolidase N-terminal domain 10 136 3.3E-20 T 29-03-2018 IPR000587 Creatinase, N-terminal GO:0016787 CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 Pfam PF00557 Metallopeptidase family M24 145 346 4.4E-66 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 Gene3D G3DSA:3.90.230.10 119 357 6.9E-79 T 29-03-2018 CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 SUPERFAMILY SSF53092 5 134 8.89E-27 T 29-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 Gene3D G3DSA:3.40.350.10 2 118 2.1E-19 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS02780 422add4afb647320bb37d742c25eccff 357 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 292 304 - T 29-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 SUPERFAMILY SSF46785 1100 1165 1.43E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 Gene3D G3DSA:1.10.10.10 1101 1155 6.2E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 Pfam PF01580 FtsK/SpoIIIE family 817 953 1.3E-44 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 Pfam PF01580 FtsK/SpoIIIE family 955 1005 1.1E-13 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 Gene3D G3DSA:3.40.50.300 103 1049 5.1E-31 T 29-03-2018 CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 Pfam PF09397 Ftsk gamma domain 1101 1162 2.9E-27 T 29-03-2018 IPR018541 FtsK gamma domain CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 SUPERFAMILY SSF52540 790 1078 8.36E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02635 a805f875a4dc8c13b6413bbab1fa72eb 1169 SMART SM00843 1099 1164 3.9E-35 T 29-03-2018 IPR018541 FtsK gamma domain CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 3.3E-23 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 132 6.3E-13 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 Gene3D G3DSA:1.20.5.440 90 132 1.3E-12 T 29-03-2018 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 21.401 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 SUPERFAMILY SSF46604 88 133 1.67E-7 T 29-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 SUPERFAMILY SSF51344 3 85 1.23E-21 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 Gene3D G3DSA:2.60.15.10 2 89 3.7E-24 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 89 1.0E-42 T 29-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01265 794a7758619d9ae360f7f590bd9cf058 134 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 132 1.2E-32 T 29-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SUPERFAMILY SSF50156 105 216 8.2E-21 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SMART SM00228 131 202 8.0E-14 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Gene3D G3DSA:3.90.226.10 211 401 1.9E-57 T 29-03-2018 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Pfam PF01471 Putative peptidoglycan binding domain 414 464 1.7E-11 T 29-03-2018 IPR002477 Peptidoglycan binding-like CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 83 400 9.6E-104 T 29-03-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Pfam PF13180 PDZ domain 132 210 1.2E-12 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Gene3D G3DSA:3.30.750.44 53 130 2.3E-18 T 29-03-2018 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Gene3D G3DSA:2.30.42.10 131 210 2.4E-20 T 29-03-2018 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SUPERFAMILY SSF47090 400 468 2.83E-12 T 29-03-2018 IPR002477 Peptidoglycan binding-like CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Gene3D G3DSA:1.10.101.10 402 479 3.3E-14 T 29-03-2018 IPR002477 Peptidoglycan binding-like CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 Pfam PF03572 Peptidase family S41 226 389 3.9E-50 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SUPERFAMILY SSF52096 220 395 1.11E-69 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SUPERFAMILY SSF52096 70 149 1.11E-69 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS04105 f5a2e13b958ee2ceac2c12b5cff7c9d8 491 SMART SM00245 202 391 1.6E-62 T 29-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CFE88_RS07120 e23bbc71fdd1777199e2452de104d27e 138 Gene3D G3DSA:3.10.180.10 11 133 4.0E-8 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS07120 e23bbc71fdd1777199e2452de104d27e 138 SUPERFAMILY SSF54593 14 120 3.44E-10 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 SMART SM00937 46 156 1.3E-60 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 Pfam PF03462 PCRF domain 2 180 4.4E-63 T 29-03-2018 IPR005139 Peptide chain release factor GO:0006415 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 Gene3D G3DSA:1.20.58.410 1 84 2.3E-19 T 29-03-2018 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 SUPERFAMILY SSF75620 2 329 8.89E-134 T 29-03-2018 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 Pfam PF00472 RF-1 domain 190 300 1.6E-43 T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 328 37.077 T 29-03-2018 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 326 1.9E-155 T 29-03-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 207 223 - T 29-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CFE88_RS07410 ccf10e145cbc08589b23761646a91b11 333 Gene3D G3DSA:3.30.160.20 188 270 1.2E-32 T 29-03-2018 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 29-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 SMART SM00917 369 500 2.2E-31 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 Pfam PF00682 HMGL-like 5 273 3.1E-97 T 29-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 SUPERFAMILY SSF51569 1 291 2.01E-94 T 29-03-2018 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 5 495 9.8E-202 T 29-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 Pfam PF08502 LeuA allosteric (dimerisation) domain 370 499 4.5E-35 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 Gene3D G3DSA:3.20.20.70 1 328 6.2E-107 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 SUPERFAMILY SSF110921 403 495 6.93E-18 T 29-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS01485 39bef08a58ca288a31462e343003f32d 511 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 40.511 T 29-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CFE88_RS11275 8fd2edaa85bd3603e81e6abb8190e0b7 187 PIRSF PIRSF006707 2 186 9.9E-47 T 29-03-2018 IPR026282 DNA-binding protein, MJ1563 type CFE88_RS11275 8fd2edaa85bd3603e81e6abb8190e0b7 187 SUPERFAMILY SSF46785 11 152 1.53E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11275 8fd2edaa85bd3603e81e6abb8190e0b7 187 Gene3D G3DSA:1.10.10.10 4 170 1.7E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03585 1e280aa17f7fd2b9196a5e6f7d948686 502 Gene3D G3DSA:3.90.1150.10 345 470 8.5E-44 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03585 1e280aa17f7fd2b9196a5e6f7d948686 502 Pfam PF02347 Glycine cleavage system P-protein 41 309 6.3E-9 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CFE88_RS03585 1e280aa17f7fd2b9196a5e6f7d948686 502 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 7 485 58.433 T 29-03-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 CFE88_RS03585 1e280aa17f7fd2b9196a5e6f7d948686 502 Gene3D G3DSA:3.40.640.10 83 344 1.4E-38 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS03585 1e280aa17f7fd2b9196a5e6f7d948686 502 SUPERFAMILY SSF53383 9 482 3.48E-109 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06545 5e573a1eca9b68eca4ca2516236a6269 115 Hamap MF_01861 UPF0738 protein . 1 113 24.898 T 29-03-2018 IPR020908 Uncharacterised protein family UPF0738 CFE88_RS08415 8a0585ffce57ce759a96cc5cc0d1ba41 292 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 33 291 31.26 T 29-03-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 CFE88_RS08415 8a0585ffce57ce759a96cc5cc0d1ba41 292 Pfam PF02649 Type I GTP cyclohydrolase folE2 33 286 4.3E-71 T 29-03-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 CFE88_RS08415 8a0585ffce57ce759a96cc5cc0d1ba41 292 TIGRFAM TIGR00294 TIGR00294: GTP cyclohydrolase 14 286 2.0E-50 T 29-03-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 CFE88_RS08415 8a0585ffce57ce759a96cc5cc0d1ba41 292 Gene3D G3DSA:3.10.270.10 32 289 1.1E-82 T 29-03-2018 CFE88_RS03850 28362e7608ed17610d3a45a99448127d 215 Pfam PF02224 Cytidylate kinase 6 213 2.8E-68 T 29-03-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CFE88_RS03850 28362e7608ed17610d3a45a99448127d 215 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 213 9.8E-71 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CFE88_RS03850 28362e7608ed17610d3a45a99448127d 215 SUPERFAMILY SSF52540 1 214 1.92E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03850 28362e7608ed17610d3a45a99448127d 215 Gene3D G3DSA:3.40.50.300 1 215 1.5E-49 T 29-03-2018 CFE88_RS03850 28362e7608ed17610d3a45a99448127d 215 Hamap MF_00238 Cytidylate kinase [cmk]. 4 215 30.55 T 29-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 Pfam PF11858 Domain of unknown function (DUF3378) 3 75 7.1E-21 T 29-03-2018 IPR024568 Ribonuclease HIII, N-terminal CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 Gene3D G3DSA:3.30.310.10 2 66 1.3E-4 T 29-03-2018 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 SUPERFAMILY SSF53098 89 302 6.22E-49 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 Pfam PF01351 Ribonuclease HII 91 294 1.4E-42 T 29-03-2018 IPR024567 Ribonuclease HII/HIII domain CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 PIRSF PIRSF037748 1 303 9.8E-113 T 29-03-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 Gene3D G3DSA:3.30.420.10 88 306 2.3E-38 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 Hamap MF_00053 Ribonuclease HIII [rnhC]. 1 302 28.229 T 29-03-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 CFE88_RS05665 a3b488db01bfc0cd012703b279d92fba 308 TIGRFAM TIGR00716 rnhC: ribonuclease HIII 19 294 5.9E-64 T 29-03-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 135 1.1E-26 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 SMART SM00898 2 136 1.8E-33 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 Gene3D G3DSA:3.20.190.10 2 143 1.2E-28 T 29-03-2018 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 SMART SM01232 150 244 1.7E-32 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 ProSitePatterns PS01242 Zinc finger FPG-type signature. 265 289 - T 29-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 SUPERFAMILY SSF81624 2 155 7.72E-26 T 29-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 Pfam PF06827 Zinc finger found in FPG and IleRS 263 289 5.9E-10 T 29-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 SUPERFAMILY SSF46946 150 241 2.09E-26 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 SUPERFAMILY SSF57716 240 289 1.25E-12 T 29-03-2018 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 Gene3D G3DSA:1.10.8.50 152 290 3.1E-38 T 29-03-2018 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 151 241 8.9E-20 T 29-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CFE88_RS02865 4ba888f98a1f008644f4e85c2b99e3ae 290 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 289 4.9E-70 T 29-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 SUPERFAMILY SSF54736 52 122 2.96E-24 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.8E-47 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 Gene3D G3DSA:1.20.5.710 2 51 4.2E-17 T 29-03-2018 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 122 3.0E-28 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 2.9E-29 T 29-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 Gene3D G3DSA:3.30.1390.10 52 122 5.6E-29 T 29-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 122 24.815 T 29-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 49 4.5E-21 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08570 1e21c6095a8d1564a7085eac6459baac 122 SUPERFAMILY SSF48300 3 58 2.22E-18 T 29-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 Gene3D G3DSA:3.30.110.60 1 96 9.0E-30 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 8 96 2.0E-44 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 2 96 9.2E-34 T 29-03-2018 IPR017924 RNA-binding protein YhbY GO:0003723 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 SUPERFAMILY SSF75471 1 95 1.57E-31 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 Pfam PF01985 CRS1 / YhbY (CRM) domain 2 85 8.2E-24 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CFE88_RS03275 909cbbaf449f43a3e27d27e650aa6e88 96 SMART SM01103 2 85 9.4E-42 T 29-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 Gene3D G3DSA:3.40.50.150 8 224 7.5E-55 T 29-03-2018 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 21 286 8.3E-84 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 SUPERFAMILY SSF53335 19 289 9.51E-73 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 SMART SM00650 37 213 2.4E-79 T 29-03-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 53 80 - T 29-03-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 Gene3D G3DSA:1.10.8.100 225 290 5.4E-23 T 29-03-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 Pfam PF00398 Ribosomal RNA adenine dimethylase 21 281 5.6E-69 T 29-03-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CFE88_RS08900 50b841e351951c49cd99ae2a4ae9f62d 296 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 21 289 53.397 T 29-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 ProSitePatterns PS00217 Sugar transport proteins signature 2. 125 150 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 PRINTS PR00171 Sugar transporter signature 359 380 1.9E-27 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 PRINTS PR00171 Sugar transporter signature 271 281 1.9E-27 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 PRINTS PR00171 Sugar transporter signature 37 47 1.9E-27 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 PRINTS PR00171 Sugar transporter signature 120 139 1.9E-27 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 PRINTS PR00171 Sugar transporter signature 382 394 1.9E-27 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 83 100 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 27 454 1.3E-112 T 29-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 Pfam PF00083 Sugar (and other) transporter 32 457 2.0E-118 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 Gene3D G3DSA:1.20.1250.20 17 228 5.6E-42 T 29-03-2018 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 Gene3D G3DSA:1.20.1250.20 236 467 8.4E-42 T 29-03-2018 CFE88_RS10515 ae4ef46dc1420b650a8e79d3e2b6511c 467 SUPERFAMILY SSF103473 22 455 9.02E-84 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:2.40.30.10 190 296 1.1E-19 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Pfam PF03144 Elongation factor Tu domain 2 222 292 5.4E-12 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 SUPERFAMILY SSF54980 305 390 1.15E-15 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:3.30.70.240 404 485 2.3E-17 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 SMART SM00838 398 483 3.7E-5 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 SUPERFAMILY SSF52540 4 210 1.77E-58 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Pfam PF00679 Elongation factor G C-terminus 399 477 3.0E-21 T 29-03-2018 IPR000640 Elongation factor EFG, domain V-like CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 PRINTS PR00315 GTP-binding elongation factor signature 54 62 1.3E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 PRINTS PR00315 GTP-binding elongation factor signature 10 23 1.3E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 PRINTS PR00315 GTP-binding elongation factor signature 126 135 1.3E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 PRINTS PR00315 GTP-binding elongation factor signature 90 101 1.3E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 PRINTS PR00315 GTP-binding elongation factor signature 74 84 1.3E-14 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Pfam PF00009 Elongation factor Tu GTP binding domain 7 198 2.8E-57 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:3.40.50.300 2 70 3.2E-10 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:3.30.70.870 305 403 3.1E-32 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Pfam PF14492 Elongation Factor G, domain II 332 383 1.9E-6 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 SUPERFAMILY SSF54980 401 516 1.87E-26 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 138 2.2E-24 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 8 602 1.0E-284 T 29-03-2018 IPR006298 GTP-binding protein TypA GO:0005525 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:3.40.50.300 71 189 2.0E-31 T 29-03-2018 CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 SUPERFAMILY SSF50447 155 302 4.37E-31 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS05795 a0e75dfdc3e384a939c3e1f03516a4e0 615 Gene3D G3DSA:2.40.50.250 486 576 2.2E-37 T 29-03-2018 CFE88_RS00540 b797a7105a699f891e94283038036060 116 Gene3D G3DSA:1.10.10.10 1 113 4.8E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00540 b797a7105a699f891e94283038036060 116 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 6 112 1.9E-30 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS00540 b797a7105a699f891e94283038036060 116 SUPERFAMILY SSF46785 5 111 2.73E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00925 942667f8e0551efc4bb55aa08de0c22c 227 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 26 226 1.1E-51 T 29-03-2018 IPR005744 Hly-III GO:0016021|GO:0019835 CFE88_RS00925 942667f8e0551efc4bb55aa08de0c22c 227 Pfam PF03006 Haemolysin-III related 24 220 1.4E-29 T 29-03-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CFE88_RS08825 31845fc875f09dbfaeb405c12a37d60b 133 SMART SM00316 4 74 2.6E-26 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS08825 31845fc875f09dbfaeb405c12a37d60b 133 SUPERFAMILY SSF50249 4 88 2.31E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08825 31845fc875f09dbfaeb405c12a37d60b 133 Gene3D G3DSA:2.40.50.140 7 105 1.7E-28 T 29-03-2018 CFE88_RS08825 31845fc875f09dbfaeb405c12a37d60b 133 Pfam PF00575 S1 RNA binding domain 4 74 4.7E-21 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS11005 93379ca4dafcf79b94e1e9494cd0d297 157 Pfam PF16890 Domain of unknown function (DUF5083) 1 157 1.1E-101 T 29-03-2018 IPR031676 Protein of unknown function DUF5083 CFE88_RS11005 93379ca4dafcf79b94e1e9494cd0d297 157 Gene3D G3DSA:1.20.1070.10 4 140 4.7E-4 T 29-03-2018 CFE88_RS11820 e13a391ec0f3b807c8e2224fd2c9fa47 305 Pfam PF01569 PAP2 superfamily 171 287 1.4E-20 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS11820 e13a391ec0f3b807c8e2224fd2c9fa47 305 Gene3D G3DSA:1.20.144.10 47 287 7.8E-19 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS11820 e13a391ec0f3b807c8e2224fd2c9fa47 305 SUPERFAMILY SSF48317 60 280 3.53E-38 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS11820 e13a391ec0f3b807c8e2224fd2c9fa47 305 SMART SM00014 170 285 2.7E-8 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 ProSitePatterns PS00211 ABC transporters family signature. 828 842 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 938 23.127 T 29-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:1.10.8.280 284 405 2.0E-39 T 29-03-2018 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 SUPERFAMILY SSF52540 5 206 2.05E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 SUPERFAMILY SSF52540 430 569 2.05E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:3.40.50.300 415 617 1.0E-22 T 29-03-2018 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:3.40.50.300 12 37 0.014 T 29-03-2018 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 922 0.0 T 29-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Pfam PF00005 ABC transporter 622 858 1.4E-9 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:3.30.190.20 129 247 2.4E-43 T 29-03-2018 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:3.40.50.300 618 942 8.7E-57 T 29-03-2018 CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 SUPERFAMILY SSF52540 614 912 6.5E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07380 1488ef9d7d1ca645c39d863d469fc3dd 944 Gene3D G3DSA:3.40.50.300 38 117 7.9E-4 T 29-03-2018 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 Gene3D G3DSA:2.40.30.20 1 88 4.3E-26 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 1.2E-65 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 PIRSF PIRSF000498 1 208 1.0E-71 T 29-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 SUPERFAMILY SSF63380 92 196 2.55E-30 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 SUPERFAMILY SSF63380 1 87 2.38E-23 T 29-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 Gene3D G3DSA:2.40.30.20 93 190 3.5E-30 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 Pfam PF00677 Lumazine binding domain 100 183 5.6E-22 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02510 617eda15a7dfe8326974d801884dbf9a 210 Pfam PF00677 Lumazine binding domain 3 86 2.0E-20 T 29-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 SUPERFAMILY SSF75169 204 248 2.22E-21 T 29-03-2018 IPR027396 DsrEFH-like CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 SUPERFAMILY SSF75169 298 351 2.22E-21 T 29-03-2018 IPR027396 DsrEFH-like CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Gene3D G3DSA:3.30.110.40 104 190 5.4E-24 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Gene3D G3DSA:3.40.250.10 7 103 3.5E-21 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Pfam PF13686 DsrE/DsrF/DrsH-like family 202 355 1.3E-55 T 29-03-2018 IPR032836 DsrE2-like family CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Pfam PF01206 Sulfurtransferase TusA 121 189 6.8E-17 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 SMART SM00450 10 102 1.9E-19 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Pfam PF00581 Rhodanese-like domain 15 97 2.8E-15 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 SUPERFAMILY SSF52821 14 100 3.14E-25 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 Gene3D G3DSA:3.40.1260.10 195 356 3.7E-51 T 29-03-2018 CFE88_RS09970 541883a6056b37ece5bf3f43491ec0e1 356 SUPERFAMILY SSF64307 99 189 4.97E-20 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 Gene3D G3DSA:3.40.50.720 1 256 2.1E-42 T 29-03-2018 CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 PIRSF PIRSF000094 1 256 7.7E-92 T 29-03-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 SUPERFAMILY SSF51735 5 254 1.87E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS12620 570aabe931092ca6d61a3e588da8d793 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 5.7E-80 T 29-03-2018 CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 Gene3D G3DSA:3.40.50.720 1 256 2.1E-42 T 29-03-2018 CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.5E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 PIRSF PIRSF000094 1 256 7.7E-92 T 29-03-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 SUPERFAMILY SSF51735 5 254 1.87E-63 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11985 570aabe931092ca6d61a3e588da8d793 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 5.7E-80 T 29-03-2018 CFE88_RS03280 60e99b97e91e81704599d96c1657ac0b 191 Pfam PF01467 Cytidylyltransferase-like 7 163 9.4E-26 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CFE88_RS03280 60e99b97e91e81704599d96c1657ac0b 191 SUPERFAMILY SSF52374 1 189 7.51E-47 T 29-03-2018 CFE88_RS03280 60e99b97e91e81704599d96c1657ac0b 191 Gene3D G3DSA:3.40.50.620 1 189 7.4E-42 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03280 60e99b97e91e81704599d96c1657ac0b 191 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 189 27.497 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CFE88_RS03280 60e99b97e91e81704599d96c1657ac0b 191 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 188 7.8E-56 T 29-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 Gene3D G3DSA:3.40.718.10 1 345 1.5E-112 T 29-03-2018 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 338 4.2E-139 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 338 8.5E-121 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 SMART SM01329 4 342 2.1E-160 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 SUPERFAMILY SSF53659 1 342 2.3E-109 T 29-03-2018 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 237 256 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CFE88_RS01480 4460db1abac958398e9e4c7a373c5c9e 347 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 346 43.948 T 29-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CFE88_RS08395 49473981a01ed70cb4fb31095cce3977 210 TIGRFAM TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase 2 207 5.2E-86 T 29-03-2018 IPR017553 3-hexulose-6-phosphate synthase GO:0005975|GO:0043801 KEGG: 00030+4.1.2.43|KEGG: 00680+4.1.2.43|MetaCyc: PWY-1861|MetaCyc: PWY-7796 CFE88_RS08395 49473981a01ed70cb4fb31095cce3977 210 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 202 6.5E-30 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS08395 49473981a01ed70cb4fb31095cce3977 210 Gene3D G3DSA:3.20.20.70 1 208 8.3E-39 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS08395 49473981a01ed70cb4fb31095cce3977 210 SUPERFAMILY SSF51366 3 208 1.62E-40 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS08395 49473981a01ed70cb4fb31095cce3977 210 SMART SM00934 2 203 3.2E-36 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05035 0e80fc9af6a383d4b33a44717d404e24 130 Gene3D G3DSA:1.10.260.40 1 105 1.9E-13 T 29-03-2018 CFE88_RS05035 0e80fc9af6a383d4b33a44717d404e24 130 SMART SM00530 7 68 1.6E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS05035 0e80fc9af6a383d4b33a44717d404e24 130 SUPERFAMILY SSF47413 2 75 1.89E-9 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS05035 0e80fc9af6a383d4b33a44717d404e24 130 Pfam PF13413 Helix-turn-helix domain 8 67 4.3E-16 T 29-03-2018 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 Gene3D G3DSA:3.90.76.10 46 184 1.9E-27 T 29-03-2018 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 SUPERFAMILY SSF53850 35 520 7.78E-98 T 29-03-2018 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 PIRSF PIRSF002741 2 532 3.3E-79 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 450 9.2E-71 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 Gene3D G3DSA:3.10.105.10 288 503 6.2E-42 T 29-03-2018 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 29-03-2018 IPR023765 Solute-binding protein family 5, conserved site CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 TIGRFAM TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein 29 530 1.3E-214 T 29-03-2018 IPR011980 Nickel ABC transporter, substrate-binding protein NikA GO:0015675|GO:0016151|GO:0020037 CFE88_RS10320 aa730997c43588b9804aa869babdc450 532 Gene3D G3DSA:3.40.190.10 185 287 1.1E-15 T 29-03-2018 CFE88_RS05400 0bb85260d838a3cf1d7054f093df4fba 565 Pfam PF05670 Domain of unknown function (DUF814) 450 533 2.4E-26 T 29-03-2018 IPR008532 Domain of unknown function DUF814 CFE88_RS05400 0bb85260d838a3cf1d7054f093df4fba 565 Gene3D G3DSA:2.30.310.10 1 165 2.9E-46 T 29-03-2018 CFE88_RS05400 0bb85260d838a3cf1d7054f093df4fba 565 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 4 441 7.6E-140 T 29-03-2018 CFE88_RS05400 0bb85260d838a3cf1d7054f093df4fba 565 Gene3D G3DSA:3.40.970.40 238 288 6.0E-11 T 29-03-2018 CFE88_RS05400 0bb85260d838a3cf1d7054f093df4fba 565 Gene3D G3DSA:1.10.8.50 166 235 1.1E-18 T 29-03-2018 CFE88_RS05510 a6e41bea03b2daca51c5a90e492415be 263 SUPERFAMILY SSF64438 5 262 3.3E-74 T 29-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic CFE88_RS05510 a6e41bea03b2daca51c5a90e492415be 263 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 27 260 1.6E-55 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase CFE88_RS05510 a6e41bea03b2daca51c5a90e492415be 263 Gene3D G3DSA:3.60.140.10 2 263 1.1E-64 T 29-03-2018 CFE88_RS05510 a6e41bea03b2daca51c5a90e492415be 263 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 34 262 1.4E-46 T 29-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 SUPERFAMILY SSF69065 11 175 6.98E-52 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 Pfam PF00035 Double-stranded RNA binding motif 174 237 4.0E-15 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 SMART SM00535 32 167 1.8E-52 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 SMART SM00358 173 240 3.2E-19 T 29-03-2018 IPR014720 Double-stranded RNA-binding domain CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 ProSitePatterns PS00517 Ribonuclease III family signature. 56 64 - T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 22 237 1.1E-79 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 SUPERFAMILY SSF54768 160 241 7.7E-21 T 29-03-2018 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 Gene3D G3DSA:3.30.160.20 171 244 1.7E-19 T 29-03-2018 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 Gene3D G3DSA:1.10.1520.10 3 167 3.2E-43 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 Pfam PF14622 Ribonuclease-III-like 31 160 1.3E-35 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS05280 b72996111bcf0d2588f1cd7f83b25b0c 245 Hamap MF_00104 Ribonuclease 3 [rnc]. 20 236 30.247 T 29-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CFE88_RS00555 2711c9596422723dd96e61e312bcb81a 253 SUPERFAMILY SSF54593 47 140 1.32E-9 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS00555 2711c9596422723dd96e61e312bcb81a 253 Pfam PF13468 Glyoxalase-like domain 5 190 5.6E-34 T 29-03-2018 IPR025870 Glyoxalase-like domain CFE88_RS00555 2711c9596422723dd96e61e312bcb81a 253 Gene3D G3DSA:3.10.180.10 2 140 1.5E-7 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS07585 4bf83894457a2161470c86d8225feb7d 324 SMART SM00382 26 218 3.9E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07585 4bf83894457a2161470c86d8225feb7d 324 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07585 4bf83894457a2161470c86d8225feb7d 324 SUPERFAMILY SSF52540 1 239 7.14E-76 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07585 4bf83894457a2161470c86d8225feb7d 324 Gene3D G3DSA:3.40.50.300 1 277 4.2E-74 T 29-03-2018 CFE88_RS07585 4bf83894457a2161470c86d8225feb7d 324 Pfam PF00005 ABC transporter 17 163 6.5E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS05695 7cfeb4be7e63fbf1db671498fef36fc3 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 4.3E-29 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05695 7cfeb4be7e63fbf1db671498fef36fc3 57 SUPERFAMILY SSF57829 1 55 3.36E-24 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CFE88_RS05695 7cfeb4be7e63fbf1db671498fef36fc3 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 20.975 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05695 7cfeb4be7e63fbf1db671498fef36fc3 57 Pfam PF01783 Ribosomal L32p protein family 2 57 4.1E-28 T 29-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05695 7cfeb4be7e63fbf1db671498fef36fc3 57 Gene3D G3DSA:2.20.28.10 35 57 0.009 T 29-03-2018 CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 SUPERFAMILY SSF52540 4 238 5.32E-63 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 Pfam PF00005 ABC transporter 20 176 4.5E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 Gene3D G3DSA:3.40.50.300 1 253 5.2E-59 T 29-03-2018 CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 4 245 1.7E-113 T 29-03-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 CFE88_RS10715 585d62613f8237600c9941f94c49c65c 257 SMART SM00382 29 233 4.7E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05780 8a88126cd578ad273985c1e11f6156e8 91 Pfam PF07408 Protein of unknown function (DUF1507) 8 89 2.0E-38 T 29-03-2018 IPR009983 Uncharacterised protein family UPF0358 CFE88_RS05780 8a88126cd578ad273985c1e11f6156e8 91 Hamap MF_01560 UPF0358 protein . 1 91 25.073 T 29-03-2018 IPR009983 Uncharacterised protein family UPF0358 CFE88_RS05780 8a88126cd578ad273985c1e11f6156e8 91 Gene3D G3DSA:1.10.287.750 6 88 2.8E-39 T 29-03-2018 CFE88_RS05780 8a88126cd578ad273985c1e11f6156e8 91 SUPERFAMILY SSF140404 4 82 1.19E-34 T 29-03-2018 IPR009983 Uncharacterised protein family UPF0358 CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 Pfam PF01022 Bacterial regulatory protein, arsR family 36 79 3.0E-11 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 SUPERFAMILY SSF46785 11 108 3.06E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 1.8E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 1.8E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 1.8E-10 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 Gene3D G3DSA:1.10.10.10 3 114 8.9E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01035 da7de5a8ec64570d6c2d57ee2bdcd094 120 SMART SM00418 27 105 2.1E-24 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 SUPERFAMILY SSF56672 10 250 5.16E-54 T 29-03-2018 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Gene3D G3DSA:3.30.1490.100 263 370 8.3E-21 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Pfam PF00817 impB/mucB/samB family 15 165 6.2E-32 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Pfam PF11798 IMS family HHH motif 181 213 2.4E-9 T 29-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Pfam PF11799 impB/mucB/samB family C-terminal domain 256 363 2.2E-13 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 SUPERFAMILY SSF100879 269 355 7.06E-9 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Gene3D G3DSA:3.30.70.270 51 127 7.7E-12 T 29-03-2018 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Gene3D G3DSA:3.30.70.270 128 185 8.6E-10 T 29-03-2018 CFE88_RS04410 3471e3655d8c7ba1fde7f74766bca516 420 Gene3D G3DSA:1.10.150.20 186 262 8.9E-19 T 29-03-2018 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 Gene3D G3DSA:3.40.50.720 1 114 3.4E-19 T 29-03-2018 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 Gene3D G3DSA:3.40.50.720 115 301 2.5E-45 T 29-03-2018 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 298 4.2E-49 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 149 176 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 SUPERFAMILY SSF51735 103 299 1.5E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 SUPERFAMILY SSF52283 1 136 7.87E-34 T 29-03-2018 CFE88_RS11700 3661573b12ed9e1ab78b839d500d0079 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 330 1.5E-23 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS11360 2a2e117e64d2715bca08adaadb9de6aa 483 Pfam PF13520 Amino acid permease 33 459 2.5E-56 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS11360 2a2e117e64d2715bca08adaadb9de6aa 483 PIRSF PIRSF006060 7 481 1.0E-87 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Pfam PF07497 Rho termination factor, RNA-binding domain 63 135 4.5E-28 T 29-03-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Gene3D G3DSA:3.40.50.300 140 426 2.8E-49 T 29-03-2018 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SMART SM00382 178 364 6.8E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 167 372 2.2E-21 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SUPERFAMILY SSF68912 19 59 8.24E-7 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SUPERFAMILY SSF52540 101 380 4.31E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 TIGRFAM TIGR00767 rho: transcription termination factor Rho 19 424 1.6E-186 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SMART SM00959 17 59 6.0E-9 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SUPERFAMILY SSF50249 62 135 3.17E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 SMART SM00357 64 129 5.8E-14 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Pfam PF07498 Rho termination factor, N-terminal domain 19 59 9.6E-11 T 29-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 426 197.175 T 29-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CFE88_RS01165 87d878250693255e46addf7b3d8b834b 438 Gene3D G3DSA:2.40.50.140 15 137 9.9E-39 T 29-03-2018 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 449 8.7E-64 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 29-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 Gene3D G3DSA:3.30.420.40 1 248 2.7E-88 T 29-03-2018 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 SUPERFAMILY SSF53067 3 254 6.76E-98 T 29-03-2018 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 251 3.0E-92 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 Gene3D G3DSA:3.30.420.40 249 496 8.9E-80 T 29-03-2018 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 SUPERFAMILY SSF53067 254 492 9.71E-86 T 29-03-2018 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 Hamap MF_00186 Glycerol kinase [glpK]. 2 496 58.873 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 493 9.8E-229 T 29-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CFE88_RS04945 797c0c76283b510ff5d3671a8fdba95e 499 PIRSF PIRSF000538 2 498 4.2E-182 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Gene3D G3DSA:1.20.1270.10 502 588 3.7E-24 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 335 355 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 172 182 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 439 455 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 358 377 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 304 320 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 112 132 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.1E-77 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 SUPERFAMILY SSF100920 354 510 2.09E-61 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 602 36.795 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 SUPERFAMILY SSF53067 161 351 3.89E-67 T 29-03-2018 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Pfam PF00012 Hsp70 protein 76 573 2.9E-221 T 29-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 SUPERFAMILY SSF53067 1 157 1.42E-55 T 29-03-2018 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 573 4.8E-283 T 29-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Gene3D G3DSA:3.30.420.40 1 171 7.3E-67 T 29-03-2018 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 166 179 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 SUPERFAMILY SSF100934 477 575 2.55E-14 T 29-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Gene3D G3DSA:3.30.420.40 172 336 5.4E-49 T 29-03-2018 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 29-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CFE88_RS03350 15706bf9a3cd62fd018b810102c4170c 609 Gene3D G3DSA:2.60.34.10 360 501 7.0E-67 T 29-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 SMART SM00382 37 239 4.3E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 265 4.0E-6 T 29-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 Gene3D G3DSA:3.40.50.300 4 308 5.9E-77 T 29-03-2018 CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 Pfam PF00005 ABC transporter 29 181 1.5E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS06605 fb9cc99e8e71d0be733c54899f965d6f 313 SUPERFAMILY SSF52540 7 253 2.66E-73 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 SMART SM00967 11 85 2.0E-17 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 Gene3D G3DSA:3.30.1330.30 6 77 4.9E-14 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 Pfam PF00588 SpoU rRNA Methylase family 103 242 1.5E-39 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 Gene3D G3DSA:3.40.1280.10 78 255 2.5E-47 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 SUPERFAMILY SSF75217 73 249 5.3E-49 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 SUPERFAMILY SSF55315 9 82 1.02E-14 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 11 248 4.8E-76 T 29-03-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 CFE88_RS08620 b17612f6a26affd2296dc52d0a8f8b11 255 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 85 8.1E-19 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 Gene3D G3DSA:3.65.10.10 21 221 1.9E-47 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 3.6E-107 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 44.472 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 2.5E-174 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 SUPERFAMILY SSF55205 1 420 1.96E-137 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CFE88_RS01275 75e553ddc6563b472cc016f6af520095 421 Gene3D G3DSA:3.65.10.10 222 421 2.6E-49 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 Gene3D G3DSA:1.10.150.240 16 89 8.9E-15 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 103 194 8.9E-12 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 199 1.2E-25 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 SUPERFAMILY SSF56784 2 227 1.71E-42 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 4 226 6.5E-62 T 29-03-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 CFE88_RS05570 708acace4fb2ac2e58260d26df2b5826 228 Gene3D G3DSA:3.40.50.1000 90 228 5.5E-25 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 280 2.5E-110 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 Gene3D G3DSA:3.30.1300.10 176 284 1.0E-24 T 29-03-2018 CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 SUPERFAMILY SSF52374 3 280 4.79E-104 T 29-03-2018 CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 Hamap MF_00158 Pantothenate synthetase [panC]. 3 280 38.671 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 Gene3D G3DSA:3.40.50.620 1 175 7.0E-78 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11395 4ce77bbdda90c45fc5e6f65fd9a897ec 286 Pfam PF02569 Pantoate-beta-alanine ligase 3 279 6.0E-101 T 29-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 SMART SM00420 6 58 7.2E-19 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 Gene3D G3DSA:3.40.50.1360 66 238 5.0E-40 T 29-03-2018 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 Pfam PF00455 DeoR C terminal sensor domain 75 227 5.8E-46 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 2.7E-17 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 SUPERFAMILY SSF100950 74 228 3.27E-31 T 29-03-2018 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 SUPERFAMILY SSF46785 4 74 1.78E-14 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 SMART SM01134 73 231 6.9E-61 T 29-03-2018 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 Gene3D G3DSA:1.10.10.10 2 65 1.7E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.1E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS07740 cfdb543f3032dcafee2acbc49db89af7 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.1E-8 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 Pfam PF01202 Shikimate kinase 14 163 3.5E-41 T 29-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 Gene3D G3DSA:3.40.50.300 6 169 8.5E-23 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 ProSitePatterns PS01128 Shikimate kinase signature. 61 85 - T 29-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 PRINTS PR01100 Shikimate kinase family signature 8 23 3.1E-20 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 PRINTS PR01100 Shikimate kinase family signature 77 86 3.1E-20 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 PRINTS PR01100 Shikimate kinase family signature 98 115 3.1E-20 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 PRINTS PR01100 Shikimate kinase family signature 60 68 3.1E-20 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 PRINTS PR01100 Shikimate kinase family signature 32 45 3.1E-20 T 29-03-2018 CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 SUPERFAMILY SSF52540 8 164 2.8E-25 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03570 ebb302bc0fb796a45ade539e50601588 170 Hamap MF_00109 Shikimate kinase [aroK]. 5 168 23.659 T 29-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 Gene3D G3DSA:3.90.1530.10 18 120 3.1E-36 T 29-03-2018 CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 29 278 7.8E-96 T 29-03-2018 IPR023705 Nucleoid occlusion protein CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 SUPERFAMILY SSF110849 29 164 4.66E-33 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 27 204 4.0E-56 T 29-03-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 Pfam PF02195 ParB-like nuclease domain 31 120 6.8E-27 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 Gene3D G3DSA:1.10.10.730 121 168 3.0E-20 T 29-03-2018 CFE88_RS09670 285ac1c2fc7c4e034d88b2f514c2f65f 279 SMART SM00470 30 120 2.1E-32 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 SUPERFAMILY SSF52540 329 571 7.87E-85 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 Gene3D G3DSA:1.20.1560.10 3 320 3.5E-68 T 29-03-2018 CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 Pfam PF00664 ABC transporter transmembrane region 22 289 1.5E-49 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 SMART SM00382 360 547 1.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 Gene3D G3DSA:3.40.50.300 321 575 1.0E-72 T 29-03-2018 CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 Pfam PF00005 ABC transporter 351 501 3.7E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS08000 9496d5b616bd64d82c0c5e07f0370f15 575 SUPERFAMILY SSF90123 10 319 3.53E-72 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS10465 f73d4ecf0cc1048cd114fecdc0e6e2c3 124 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 3 118 8.4E-37 T 29-03-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain CFE88_RS10465 f73d4ecf0cc1048cd114fecdc0e6e2c3 124 SUPERFAMILY SSF53062 1 118 4.71E-30 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CFE88_RS10465 f73d4ecf0cc1048cd114fecdc0e6e2c3 124 Pfam PF03610 PTS system fructose IIA component 4 112 1.3E-22 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CFE88_RS10465 f73d4ecf0cc1048cd114fecdc0e6e2c3 124 Gene3D G3DSA:3.40.50.510 1 124 7.1E-24 T 29-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 PIRSF PIRSF001338 1 160 9.0E-70 T 29-03-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 SUPERFAMILY SSF52255 2 159 6.67E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 SMART SM01001 1 152 5.4E-98 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 156 31.709 T 29-03-2018 IPR033747 Class I PurE CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 Pfam PF00731 AIR carboxylase 2 146 7.5E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 3 159 3.5E-65 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS06030 619287ac7125fe008b565395e0f07ba3 160 Gene3D G3DSA:3.40.50.7700 1 160 2.2E-66 T 29-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CFE88_RS01070 8bf4f2eabbac1b0e4849754026f40e57 136 Pfam PF04134 Protein of unknown function, DUF393 4 111 4.3E-15 T 29-03-2018 IPR007263 Protein of unknown function DUF393 CFE88_RS04910 320e3197f04042a932699674d0d87e41 412 SUPERFAMILY SSF53383 33 361 2.36E-40 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04910 320e3197f04042a932699674d0d87e41 412 Pfam PF06838 Methionine gamma-lyase 5 406 1.6E-205 T 29-03-2018 IPR009651 Putative methionine gamma-lyase CFE88_RS04910 320e3197f04042a932699674d0d87e41 412 Gene3D G3DSA:3.40.640.10 51 263 2.9E-31 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 SUPERFAMILY SSF102114 6 311 1.28E-77 T 29-03-2018 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 Gene3D G3DSA:3.20.20.70 1 340 9.3E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 340 3.1E-119 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 Pfam PF13353 4Fe-4S single cluster domain 22 133 2.4E-8 T 29-03-2018 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 Pfam PF06463 Molybdenum Cofactor Synthesis C 189 317 4.8E-39 T 29-03-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 Reactome: R-HSA-947581 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 29-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 SMART SM00729 14 222 8.8E-5 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 340 40.803 T 29-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 CFE88_RS00535 eb2d31c21ad6695e6d7196d0d6c4c724 340 Pfam PF04055 Radical SAM superfamily 18 182 2.5E-25 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 PIRSF PIRSF500060 1 525 1.4E-222 T 29-03-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 PIRSF PIRSF006429 1 524 4.5E-157 T 29-03-2018 IPR024188 Glutamate synthase large subunit-like protein CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 SUPERFAMILY SSF51395 9 126 1.25E-109 T 29-03-2018 CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 SUPERFAMILY SSF51395 165 517 1.25E-109 T 29-03-2018 CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 Gene3D G3DSA:3.20.20.70 111 525 9.4E-91 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11940 0a06710f178e4e8863ac118f947b585e 525 Pfam PF01645 Conserved region in glutamate synthase 140 493 8.1E-101 T 29-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 Pfam PF00297 Ribosomal protein L3 105 190 5.1E-15 T 29-03-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 215 39.142 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 ProSitePatterns PS00474 Ribosomal protein L3 signature. 110 133 - T 29-03-2018 IPR019926 Ribosomal protein L3, conserved site CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 Gene3D G3DSA:4.10.960.10 66 173 3.7E-31 T 29-03-2018 CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 SUPERFAMILY SSF50447 1 219 1.5E-76 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS00615 b6c61a4c778612ff1b9d06107bacf600 220 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 211 1.3E-82 T 29-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 Gene3D G3DSA:3.40.50.10360 1 174 8.7E-73 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 ProDom PD102102 UPF0340 3D-STRUCTURE YWLG SMU.87 STU1894 BT9727_4999 TRANSFERASE TTE0860 SPY1898/M5005_SPY1614 TT1679 19 173 5.0E-86 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 PIRSF PIRSF007510 1 174 2.3E-83 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 TIGRFAM TIGR01440 TIGR01440: TIGR01440 family protein 2 173 6.1E-83 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 SUPERFAMILY SSF110710 2 174 7.06E-73 T 29-03-2018 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 Hamap MF_00800 UPF0340 protein . 1 174 85.624 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS01205 5ba3757b9e98f0c21bd77cfd1ea1b0e9 174 Pfam PF04260 Protein of unknown function (DUF436) 4 173 4.0E-71 T 29-03-2018 IPR006340 Protein of unknown function DUF436 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 SUPERFAMILY SSF50249 4 147 1.62E-43 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PIRSF PIRSF039101 1 495 2.1E-201 T 29-03-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 Pfam PF00152 tRNA synthetases class II (D, K and N) 156 492 1.9E-85 T 29-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 5 494 3.6E-222 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 Gene3D G3DSA:2.40.50.140 5 147 9.0E-42 T 29-03-2018 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PRINTS PR00982 Lysyl-tRNA synthetase signature 207 223 4.7E-40 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PRINTS PR00982 Lysyl-tRNA synthetase signature 236 249 4.7E-40 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PRINTS PR00982 Lysyl-tRNA synthetase signature 377 393 4.7E-40 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PRINTS PR00982 Lysyl-tRNA synthetase signature 191 201 4.7E-40 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 PRINTS PR00982 Lysyl-tRNA synthetase signature 254 271 4.7E-40 T 29-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 Gene3D G3DSA:3.30.930.10 148 492 2.1E-108 T 29-03-2018 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 SUPERFAMILY SSF55681 154 493 4.78E-125 T 29-03-2018 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 Pfam PF01336 OB-fold nucleic acid binding domain 61 138 7.7E-13 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CFE88_RS08780 6212ee30ba549c3b0959b1b5efb2b6e5 495 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 11 495 46.26 T 29-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS01000 917f5f5a0133b0b97782a440b433c1db 311 Pfam PF07949 YbbR-like protein 47 126 4.6E-7 T 29-03-2018 IPR012505 YbbR-like CFE88_RS01000 917f5f5a0133b0b97782a440b433c1db 311 Pfam PF07949 YbbR-like protein 229 307 6.4E-11 T 29-03-2018 IPR012505 YbbR-like CFE88_RS01000 917f5f5a0133b0b97782a440b433c1db 311 Pfam PF07949 YbbR-like protein 143 220 8.3E-9 T 29-03-2018 IPR012505 YbbR-like CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 325 142.915 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 PIRSF PIRSF002465 1 325 2.8E-127 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 SUPERFAMILY SSF53659 1 323 6.99E-102 T 29-03-2018 CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 Gene3D G3DSA:3.40.718.10 1 325 4.5E-104 T 29-03-2018 CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 322 6.6E-119 T 29-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CFE88_RS05300 f2b31985e8d58b819a4f12523f8c5f4d 325 Pfam PF02504 Fatty acid synthesis protein 2 316 6.4E-109 T 29-03-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 CFE88_RS07520 7f7234544e12c134b62959814ce63ce4 324 Gene3D G3DSA:1.10.3470.10 2 323 1.5E-43 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS07520 7f7234544e12c134b62959814ce63ce4 324 SUPERFAMILY SSF81345 3 315 4.97E-66 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS07520 7f7234544e12c134b62959814ce63ce4 324 Pfam PF01032 FecCD transport family 13 315 4.1E-64 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 SUPERFAMILY SSF75625 1 237 3.14E-82 T 29-03-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Gene3D G3DSA:3.30.70.980 173 238 5.8E-10 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Gene3D G3DSA:1.10.10.200 2 76 3.3E-26 T 29-03-2018 IPR017856 Integrase, N-terminal zinc-binding domain-like CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Pfam PF01709 Transcriptional regulator 4 235 1.1E-81 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Gene3D G3DSA:3.30.70.980 80 172 1.0E-25 T 29-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Hamap MF_00918 Probable transcriptional regulatory protein YeeN [yeeN]. 1 238 54.726 T 29-03-2018 IPR026562 Probable transcriptional regulatory protein YeeN CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 235 1.2E-70 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS07905 dc1ba8f36a8920d2a09e4f344de9576a 238 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 237 31.049 T 29-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06550 90e2c6b5ed4a590d7049319d2ae68c8e 196 SUPERFAMILY SSF55154 4 190 2.62E-30 T 29-03-2018 IPR033469 CYTH-like domain Reactome: R-HSA-196819 CFE88_RS06550 90e2c6b5ed4a590d7049319d2ae68c8e 196 PIRSF PIRSF012526 1 193 1.1E-74 T 29-03-2018 IPR009195 Uncharacterised protein family YjbK CFE88_RS06550 90e2c6b5ed4a590d7049319d2ae68c8e 196 Pfam PF01928 CYTH domain 5 186 2.3E-25 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CFE88_RS06550 90e2c6b5ed4a590d7049319d2ae68c8e 196 SMART SM01118 4 192 6.2E-20 T 29-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CFE88_RS06550 90e2c6b5ed4a590d7049319d2ae68c8e 196 Gene3D G3DSA:2.40.320.10 2 196 1.8E-30 T 29-03-2018 CFE88_RS04010 0ad8f4f3e22fd99ef4365263de7147f6 224 Pfam PF13460 NAD(P)H-binding 20 200 4.2E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04010 0ad8f4f3e22fd99ef4365263de7147f6 224 SUPERFAMILY SSF51735 12 204 4.09E-29 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04010 0ad8f4f3e22fd99ef4365263de7147f6 224 Gene3D G3DSA:3.40.50.720 10 211 7.7E-18 T 29-03-2018 CFE88_RS10385 103a4bdefa37525b57c215f7597d810f 162 SUPERFAMILY SSF54637 2 155 1.44E-37 T 29-03-2018 IPR029069 HotDog domain CFE88_RS10385 103a4bdefa37525b57c215f7597d810f 162 Gene3D G3DSA:3.10.129.10 1 142 3.7E-22 T 29-03-2018 CFE88_RS10385 103a4bdefa37525b57c215f7597d810f 162 Pfam PF13279 Thioesterase-like superfamily 15 131 3.1E-19 T 29-03-2018 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Gene3D G3DSA:3.40.50.970 151 525 7.1E-77 T 29-03-2018 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 SUPERFAMILY SSF52518 149 567 8.83E-71 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Gene3D G3DSA:3.40.50.970 590 801 2.4E-47 T 29-03-2018 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Pfam PF02779 Transketolase, pyrimidine binding domain 592 788 2.9E-52 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Gene3D G3DSA:1.10.287.1150 69 148 1.5E-8 T 29-03-2018 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Pfam PF00676 Dehydrogenase E1 component 217 525 4.3E-65 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 SMART SM00861 592 788 5.3E-45 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 795 930 4.9E-35 T 29-03-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 Hamap MF_01169 2-oxoglutarate dehydrogenase E1 component [odhA]. 1 934 21.671 T 29-03-2018 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 16 929 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 SUPERFAMILY SSF52518 577 794 5.49E-39 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04150 e000b684f554a1b5a9d9297850baf039 934 PIRSF PIRSF000157 1 934 0.0 T 29-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 248 2.1E-84 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 Hamap MF_01974 Methionine aminopeptidase [map]. 1 249 36.266 T 29-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 Pfam PF00557 Metallopeptidase family M24 12 240 5.0E-48 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 Gene3D G3DSA:3.90.230.10 1 251 3.0E-70 T 29-03-2018 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 4.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 88 104 4.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 4.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 4.5E-20 T 29-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CFE88_RS01890 4dc866a341854a5ca033bad777cee1fd 251 SUPERFAMILY SSF55920 2 248 8.64E-72 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 Gene3D G3DSA:3.40.630.10 1 188 2.1E-27 T 29-03-2018 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 Gene3D G3DSA:3.40.630.10 296 374 5.8E-4 T 29-03-2018 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 Pfam PF07687 Peptidase dimerisation domain 188 274 1.1E-14 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 Gene3D G3DSA:3.30.70.360 189 289 2.6E-23 T 29-03-2018 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 74 83 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 PIRSF PIRSF001123 256 374 7.2E-4 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 PIRSF PIRSF001123 82 187 2.5E-8 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 PIRSF PIRSF001123 4 99 2.1E-4 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 Pfam PF01546 Peptidase family M20/M25/M40 76 362 3.9E-20 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 108 146 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 SUPERFAMILY SSF55031 185 290 3.66E-19 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 370 4.2E-119 T 29-03-2018 IPR010162 Peptidase M20B, peptidase T-like CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 SUPERFAMILY SSF53187 290 373 1.91E-59 T 29-03-2018 CFE88_RS03720 bf301b97c7423a2427dd4987f4d71bcb 374 SUPERFAMILY SSF53187 5 181 1.91E-59 T 29-03-2018 CFE88_RS08030 1265642356d8cebf65793d7bc66d48d0 264 Hamap MF_02070 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase. 21 259 60.533 T 29-03-2018 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase GO:0047244 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 CFE88_RS08030 1265642356d8cebf65793d7bc66d48d0 264 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 76 250 2.4E-54 T 29-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 CFE88_RS08030 1265642356d8cebf65793d7bc66d48d0 264 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 80 244 1.2E-55 T 29-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 Pfam PF16199 Radical_SAM C-terminal domain 218 301 9.2E-24 T 29-03-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 Pfam PF04055 Radical SAM superfamily 50 212 1.4E-14 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 SMART SM00729 30 257 9.5E-39 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 SUPERFAMILY SSF102114 4 312 1.31E-53 T 29-03-2018 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 13 310 7.5E-133 T 29-03-2018 IPR005911 Protein YhcC-like GO:0051536 CFE88_RS02545 eeff28e39b52949275f0c5a8de44d8ae 317 Gene3D G3DSA:3.20.20.70 9 266 2.2E-30 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Pfam PF00384 Molybdopterin oxidoreductase 105 818 1.4E-156 T 29-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 63 - T 29-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Gene3D G3DSA:3.40.50.740 633 983 6.0E-38 T 29-03-2018 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Gene3D G3DSA:2.40.40.20 1039 1227 3.2E-44 T 29-03-2018 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 SMART SM00926 40 102 8.1E-5 T 29-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 SUPERFAMILY SSF53706 7 1055 0.0 T 29-03-2018 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 6 37 2.8E-9 T 29-03-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 SUPERFAMILY SSF50692 1074 1225 3.62E-45 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Gene3D G3DSA:3.40.228.10 223 632 2.9E-95 T 29-03-2018 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Gene3D G3DSA:2.20.25.90 52 95 2.2E-26 T 29-03-2018 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 Pfam PF01568 Molydopterin dinucleotide binding domain 1078 1188 6.3E-21 T 29-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 CFE88_RS12205 5eac30a8d91064934b39f954861cc108 1227 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 6 1226 0.0 T 29-03-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Hamap MF_00974 DNA primase [dnaG]. 2 588 28.474 T 29-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Pfam PF13662 Toprim domain 260 336 5.9E-14 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 SUPERFAMILY SSF56731 115 422 4.19E-95 T 29-03-2018 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 SUPERFAMILY SSF57783 2 96 2.38E-35 T 29-03-2018 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 SMART SM00400 34 88 1.7E-37 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Gene3D G3DSA:3.40.1360.10 242 366 5.8E-33 T 29-03-2018 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 253 2.7E-40 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 TIGRFAM TIGR01391 dnaG: DNA primase 2 416 4.3E-149 T 29-03-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Pfam PF01807 CHC2 zinc finger 4 97 1.9E-38 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 SMART SM00493 260 331 4.8E-10 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 PIRSF PIRSF002811 1 598 1.9E-206 T 29-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 SUPERFAMILY SSF48024 460 558 3.4E-10 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Gene3D G3DSA:3.90.580.10 1 100 7.4E-34 T 29-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Pfam PF00772 DnaB-like helicase N terminal domain 459 556 9.1E-7 T 29-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Gene3D G3DSA:3.90.980.10 108 241 2.0E-41 T 29-03-2018 IPR013264 DNA primase, catalytic core, N-terminal CFE88_RS03440 bb25e76395e7f64db102e71eb1044dd8 598 Gene3D G3DSA:1.10.860.10 461 558 1.2E-12 T 29-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 29-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 SUPERFAMILY SSF53738 3 181 7.46E-48 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 446 45.177 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 259 371 6.1E-33 T 29-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 SUPERFAMILY SSF53738 259 367 1.02E-30 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Gene3D G3DSA:3.30.310.50 376 448 6.2E-22 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 SUPERFAMILY SSF55957 359 448 3.4E-26 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 375 443 7.2E-16 T 29-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Gene3D G3DSA:3.40.120.10 168 264 9.3E-26 T 29-03-2018 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 445 3.9E-183 T 29-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 1.7E-12 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.7E-12 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 1.7E-12 T 29-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Gene3D G3DSA:3.40.120.10 265 375 1.7E-32 T 29-03-2018 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Gene3D G3DSA:3.40.120.10 2 167 1.9E-43 T 29-03-2018 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 SUPERFAMILY SSF53738 159 258 5.89E-27 T 29-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 9.2E-43 T 29-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01005 fbf01b7a66ea8ee0595c2595905bf4bb 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 160 255 1.9E-16 T 29-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CFE88_RS01820 6a9386d053b1d6a59157ebb16bac8731 511 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 17 509 3.7E-223 T 29-03-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 CFE88_RS01820 6a9386d053b1d6a59157ebb16bac8731 511 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 47 447 2.4E-88 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS01820 6a9386d053b1d6a59157ebb16bac8731 511 Pfam PF00474 Sodium:solute symporter family 47 447 8.7E-99 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 577 3.2E-10 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 SUPERFAMILY SSF55874 449 578 6.55E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 Pfam PF07694 5TMR of 5TMR-LYT 26 207 5.8E-51 T 29-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 SUPERFAMILY SSF55781 244 364 5.33E-5 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 SMART SM00387 472 579 1.0E-4 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 Gene3D G3DSA:3.30.565.10 394 578 2.3E-19 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 Pfam PF06580 Histidine kinase 378 457 2.0E-23 T 29-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 CFE88_RS12040 c185afe5458d2ecf2849755324673546 591 Gene3D G3DSA:3.30.450.40 206 369 1.0E-5 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Gene3D G3DSA:1.10.510.10 94 351 4.3E-52 T 29-03-2018 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 SUPERFAMILY SSF56112 6 283 2.83E-78 T 29-03-2018 IPR011009 Protein kinase-like domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 29-03-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 PIRSF PIRSF000654 33 273 2.4E-32 T 29-03-2018 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 PIRSF PIRSF000654 521 619 120.0 T 29-03-2018 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Gene3D G3DSA:3.30.200.20 2 93 8.3E-26 T 29-03-2018 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 29-03-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Pfam PF03793 PASTA domain 512 573 1.4E-14 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Pfam PF03793 PASTA domain 443 504 5.0E-11 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Pfam PF03793 PASTA domain 376 438 2.4E-13 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 SMART SM00220 10 268 4.3E-68 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 Pfam PF00069 Protein kinase domain 10 258 2.7E-57 T 29-03-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 SMART SM00740 508 573 7.4E-17 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 SMART SM00740 371 438 1.8E-15 T 29-03-2018 IPR005543 PASTA domain CFE88_RS05345 0726f79d1ce8085a247d1a7166438a69 666 SMART SM00740 439 507 2.5E-12 T 29-03-2018 IPR005543 PASTA domain CFE88_RS07475 046b41d9500d5b14754b5a36cb8915be 376 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 338 2.5E-54 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS07475 046b41d9500d5b14754b5a36cb8915be 376 Pfam PF02595 Glycerate kinase family 3 338 1.8E-54 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS07475 046b41d9500d5b14754b5a36cb8915be 376 Gene3D G3DSA:3.90.1510.10 43 271 4.6E-37 T 29-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 CFE88_RS07475 046b41d9500d5b14754b5a36cb8915be 376 SUPERFAMILY SSF110738 1 367 1.57E-90 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Gene3D G3DSA:3.30.465.10 346 430 5.3E-18 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Pfam PF01595 Domain of unknown function DUF21 11 203 5.1E-50 T 29-03-2018 IPR002550 Domain of unknown function DUF21 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Pfam PF00571 CBS domain 219 273 2.0E-4 T 29-03-2018 IPR000644 CBS domain CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Pfam PF00571 CBS domain 289 338 4.3E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Gene3D G3DSA:3.10.580.10 197 345 4.8E-30 T 29-03-2018 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 Pfam PF03471 Transporter associated domain 355 428 8.0E-16 T 29-03-2018 IPR005170 Transporter-associated domain CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 SUPERFAMILY SSF56176 352 435 3.0E-15 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 SUPERFAMILY SSF54631 206 341 1.39E-28 T 29-03-2018 CFE88_RS07700 c4ede45eac89cdc295542e7254a23274 449 SMART SM01091 354 432 2.4E-16 T 29-03-2018 IPR005170 Transporter-associated domain CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 Pfam PF00122 E1-E2 ATPase 168 342 1.4E-48 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 95 669 4.5E-176 T 29-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 Pfam PF00702 haloacid dehalogenase-like hydrolase 360 576 2.3E-34 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 Gene3D G3DSA:3.40.1110.10 381 486 7.8E-21 T 29-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 214 228 1.0E-24 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 364 378 1.0E-24 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 581 1.0E-24 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 509 519 1.0E-24 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 585 597 1.0E-24 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 Gene3D G3DSA:3.40.50.1000 487 627 6.7E-39 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 SUPERFAMILY SSF56784 422 667 1.44E-51 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 SUPERFAMILY SSF56784 363 382 1.44E-51 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 Gene3D G3DSA:1.20.1110.10 125 380 9.9E-32 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 366 372 - T 29-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 SUPERFAMILY SSF81665 111 167 3.4E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 SUPERFAMILY SSF81665 265 356 3.4E-12 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 539 556 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 80 99 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 153 171 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 347 362 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 287 301 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 PRINTS PR00943 Copper-transporting ATPase signature 635 649 9.6E-11 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 SUPERFAMILY SSF81653 169 264 5.62E-23 T 29-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 77 671 1.3E-183 T 29-03-2018 CFE88_RS09955 5c8e642a20f484876c0e4611ed6cd7ad 673 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 136 647 4.4E-87 T 29-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CFE88_RS08385 6b6176ecde2a986ee5a2a910d0e440f7 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 186 3.4E-30 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08385 6b6176ecde2a986ee5a2a910d0e440f7 215 SUPERFAMILY SSF56784 2 215 1.02E-41 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08385 6b6176ecde2a986ee5a2a910d0e440f7 215 Gene3D G3DSA:3.40.50.1000 76 215 5.1E-22 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08385 6b6176ecde2a986ee5a2a910d0e440f7 215 Gene3D G3DSA:1.10.150.240 22 75 1.2E-5 T 29-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 CFE88_RS03025 4927033699b05142eda90b261173cfe0 282 PIRSF PIRSF038471 4 281 2.9E-56 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CFE88_RS03025 4927033699b05142eda90b261173cfe0 282 Pfam PF04085 rod shape-determining protein MreC 117 268 1.0E-41 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CFE88_RS03025 4927033699b05142eda90b261173cfe0 282 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 12 273 1.8E-41 T 29-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 Pfam PF00072 Response regulator receiver domain 5 114 3.0E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 SMART SM00862 153 229 9.3E-28 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 9.3E-28 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 Gene3D G3DSA:1.10.10.10 127 233 1.2E-31 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 SUPERFAMILY SSF52172 3 126 1.85E-42 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 SUPERFAMILY SSF46894 131 229 1.64E-30 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 SMART SM00448 3 113 3.9E-45 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS09800 4e4e20d3350668adfb0135dafd268bb1 233 Gene3D G3DSA:3.40.50.2300 2 126 1.0E-37 T 29-03-2018 CFE88_RS03675 63cc5a0fc1e8e67407d8e1f680893ee0 293 Gene3D G3DSA:1.10.600.10 3 293 1.4E-75 T 29-03-2018 IPR008949 Isoprenoid synthase domain CFE88_RS03675 63cc5a0fc1e8e67407d8e1f680893ee0 293 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 79 95 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS03675 63cc5a0fc1e8e67407d8e1f680893ee0 293 Pfam PF00348 Polyprenyl synthetase 29 252 3.3E-57 T 29-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 CFE88_RS03675 63cc5a0fc1e8e67407d8e1f680893ee0 293 SUPERFAMILY SSF48576 6 284 2.88E-81 T 29-03-2018 IPR008949 Isoprenoid synthase domain CFE88_RS03675 63cc5a0fc1e8e67407d8e1f680893ee0 293 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 29-03-2018 IPR033749 Polyprenyl synthetase, conserved site CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 3 427 5.3E-126 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Gene3D G3DSA:3.40.1190.10 90 295 9.5E-37 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Pfam PF02875 Mur ligase family, glutamate ligase domain 295 376 1.0E-19 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Gene3D G3DSA:3.40.50.720 4 89 1.2E-4 T 29-03-2018 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Gene3D G3DSA:3.90.190.20 296 435 1.6E-22 T 29-03-2018 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 SUPERFAMILY SSF53623 87 292 5.89E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Pfam PF08245 Mur ligase middle domain 106 274 6.0E-24 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Pfam PF01225 Mur ligase family, catalytic domain 3 101 8.2E-23 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 1 433 34.646 T 29-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 SUPERFAMILY SSF51984 1 88 3.34E-21 T 29-03-2018 CFE88_RS02640 5ff566513a3fee8e128bc04076005b08 437 SUPERFAMILY SSF53244 294 429 7.69E-34 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 Gene3D G3DSA:3.30.1360.60 447 524 8.1E-23 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 Pfam PF00367 phosphotransferase system, EIIB 454 483 1.0E-15 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 406 510 3.8E-15 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 462 479 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 1 524 3.6E-278 T 29-03-2018 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 SUPERFAMILY SSF55604 450 524 1.57E-18 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS00250 24919db7aa2f8b2a0818b4107049f1fb 529 Pfam PF02378 Phosphotransferase system, EIIC 9 343 9.5E-67 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Pfam PF03193 RsgA GTPase 64 228 6.6E-55 T 29-03-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Gene3D G3DSA:3.40.50.300 68 228 9.1E-17 T 29-03-2018 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 7 293 36.095 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Gene3D G3DSA:1.10.40.50 230 296 2.0E-22 T 29-03-2018 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 44 286 1.3E-75 T 29-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Gene3D G3DSA:2.40.50.140 1 66 1.2E-17 T 29-03-2018 CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 SUPERFAMILY SSF50249 7 67 2.4E-12 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 Pfam PF16745 RsgA N-terminal domain 8 61 2.0E-19 T 29-03-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CFE88_RS05340 d32bc7ee6a2aad374a877578ba30699f 296 SUPERFAMILY SSF52540 70 294 7.69E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Pfam PF02142 MGS-like domain 949 1035 5.7E-20 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.30.470.20 738 918 2.7E-41 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.40.50.1380 919 1048 1.6E-34 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF52440 1 127 6.33E-48 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF56059 128 399 1.33E-105 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:1.10.1030.10 405 531 1.9E-47 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.40.50.20 532 647 3.2E-59 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.5E-64 T 29-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1045 0.0 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 702 716 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.30.470.20 129 401 2.0E-64 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SMART SM00851 949 1035 2.6E-26 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SMART SM01209 672 836 3.8E-4 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.40.50.20 4 128 5.3E-37 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SMART SM01096 420 540 4.5E-66 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 1.4E-40 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF56059 666 926 1.4E-100 T 29-03-2018 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Gene3D G3DSA:3.30.1490.20 648 737 4.8E-23 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF48108 395 546 2.35E-51 T 29-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF52440 549 668 4.03E-48 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 830 837 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 SUPERFAMILY SSF52335 935 1051 2.88E-32 T 29-03-2018 IPR011607 Methylglyoxal synthase-like domain CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1056 13.037 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1057 13.365 T 29-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 5.7E-79 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS05425 87a24f2f55595137e2271180eff64227 1057 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 666 867 1.5E-39 T 29-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 SUPERFAMILY SSF51604 136 320 2.62E-25 T 29-03-2018 IPR029065 Enolase C-terminal domain-like CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 Gene3D G3DSA:3.30.390.10 1 126 3.6E-14 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 9 310 1.1E-73 T 29-03-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 Gene3D G3DSA:3.20.20.120 127 321 1.8E-20 T 29-03-2018 IPR029065 Enolase C-terminal domain-like CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 SUPERFAMILY SSF54826 1 114 3.76E-19 T 29-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS02410 0d8ea83280cdfd92ba511cf798e3289a 333 Pfam PF13378 Enolase C-terminal domain-like 141 318 9.2E-13 T 29-03-2018 IPR029065 Enolase C-terminal domain-like CFE88_RS06435 7a1f6c50c60aeaa5bdeb42e749775c4f 49 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 23 40 2.9E-5 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06435 7a1f6c50c60aeaa5bdeb42e749775c4f 49 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 41 49 2.9E-5 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06435 7a1f6c50c60aeaa5bdeb42e749775c4f 49 SUPERFAMILY SSF55347 1 49 8.5E-17 T 29-03-2018 CFE88_RS06435 7a1f6c50c60aeaa5bdeb42e749775c4f 49 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 1 49 3.9E-18 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06435 7a1f6c50c60aeaa5bdeb42e749775c4f 49 Gene3D G3DSA:3.30.360.10 1 49 1.1E-18 T 29-03-2018 CFE88_RS10100 ed68017a627f657ca364437e11a76195 1038 SUPERFAMILY SSF53756 127 290 6.91E-9 T 29-03-2018 CFE88_RS10100 ed68017a627f657ca364437e11a76195 1038 SUPERFAMILY SSF56784 381 592 6.08E-5 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS10100 ed68017a627f657ca364437e11a76195 1038 Gene3D G3DSA:3.40.50.1000 368 599 8.4E-6 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS10100 ed68017a627f657ca364437e11a76195 1038 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 4 368 4.7E-45 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS10595 65385973e1e2ee6f6219e289bab60985 171 Pfam PF04264 YceI-like domain 5 167 4.4E-33 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS10595 65385973e1e2ee6f6219e289bab60985 171 Gene3D G3DSA:2.40.128.110 1 171 3.2E-39 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS10595 65385973e1e2ee6f6219e289bab60985 171 SMART SM00867 3 168 4.2E-54 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS10595 65385973e1e2ee6f6219e289bab60985 171 SUPERFAMILY SSF101874 3 167 6.41E-41 T 29-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 7 519 4.3E-239 T 29-03-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 SMART SM00322 207 274 6.2E-7 T 29-03-2018 IPR004087 K Homology domain GO:0003676 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 TIGRFAM TIGR00277 HDIG: HDIG domain 331 408 5.9E-24 T 29-03-2018 IPR006675 HDIG domain CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 SUPERFAMILY SSF109604 319 469 1.48E-29 T 29-03-2018 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Pfam PF12072 Domain of unknown function (DUF3552) 6 204 5.7E-62 T 29-03-2018 IPR022711 Ribonuclease Y, N-terminal CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 SUPERFAMILY SSF54791 206 303 7.6E-17 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 SMART SM00471 331 437 3.9E-12 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Pfam PF00013 KH domain 212 268 1.9E-6 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Pfam PF01966 HD domain 336 427 1.0E-18 T 29-03-2018 IPR006674 HD domain CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Hamap MF_00335 Ribonuclease Y [rny]. 4 519 25.421 T 29-03-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Gene3D G3DSA:3.30.300.20 168 243 3.1E-12 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS05015 10241ece1a992188da2076a8548c0642 519 Gene3D G3DSA:1.10.3210.10 244 474 7.4E-36 T 29-03-2018 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SMART SM00028 102 135 180.0 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SMART SM00028 68 101 0.0014 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SMART SM00028 137 170 0.95 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SMART SM00028 171 205 4.1E-4 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SMART SM00028 34 67 0.023 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Gene3D G3DSA:1.25.40.10 3 58 3.5E-9 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 SUPERFAMILY SSF48452 12 209 6.32E-33 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Pfam PF14559 Tetratricopeptide repeat 48 96 1.2E-7 T 29-03-2018 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Gene3D G3DSA:1.20.58.280 136 166 1.3E-5 T 29-03-2018 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Gene3D G3DSA:1.25.40.10 167 222 5.6E-11 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Gene3D G3DSA:1.20.58.280 59 93 5.8E-13 T 29-03-2018 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Gene3D G3DSA:1.20.58.280 94 135 7.3E-7 T 29-03-2018 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Pfam PF13181 Tetratricopeptide repeat 174 205 8.5E-7 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Pfam PF13181 Tetratricopeptide repeat 105 134 0.059 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS03170 f2a1e73837e596b61f41243eeca7b3f8 222 Pfam PF13181 Tetratricopeptide repeat 138 170 0.024 T 29-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CFE88_RS08675 2bc24eaced9cad05f7dbea0bf0f9e2f2 404 Pfam PF07670 Nucleoside recognition 93 190 2.8E-6 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CFE88_RS08675 2bc24eaced9cad05f7dbea0bf0f9e2f2 404 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 80 1.0E-20 T 29-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 CFE88_RS08675 2bc24eaced9cad05f7dbea0bf0f9e2f2 404 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 194 403 6.9E-62 T 29-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 TIGRFAM TIGR00648 recU: recombination protein U 31 199 2.7E-87 T 29-03-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 Pfam PF03838 Recombination protein U 32 197 1.7E-65 T 29-03-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 Hamap MF_00130 Holliday junction resolvase RecU [recU]. 1 208 103.406 T 29-03-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 PIRSF PIRSF037785 23 207 4.9E-80 T 29-03-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 Gene3D G3DSA:3.40.1350.10 33 199 4.9E-63 T 29-03-2018 CFE88_RS03980 072423b1f06b9314eb02584c8d96800c 208 SUPERFAMILY SSF52980 34 200 1.5E-65 T 29-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CFE88_RS12095 3d9cdb3304aff434cfa45449c23d5cfe 384 SUPERFAMILY SSF110738 5 380 2.88E-138 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS12095 3d9cdb3304aff434cfa45449c23d5cfe 384 Pfam PF02595 Glycerate kinase family 6 377 5.2E-149 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS12095 3d9cdb3304aff434cfa45449c23d5cfe 384 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 5 379 1.6E-163 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS12095 3d9cdb3304aff434cfa45449c23d5cfe 384 PIRSF PIRSF006078 4 381 1.5E-142 T 29-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CFE88_RS12095 3d9cdb3304aff434cfa45449c23d5cfe 384 Gene3D G3DSA:3.90.1510.10 46 280 8.4E-95 T 29-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 CFE88_RS05415 c3a5e1b2c3997fd4a8f6b6b9a5ce9fa9 203 SUPERFAMILY SSF53271 1 199 1.3E-50 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS05415 c3a5e1b2c3997fd4a8f6b6b9a5ce9fa9 203 Pfam PF00156 Phosphoribosyl transferase domain 44 174 2.7E-19 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS05415 c3a5e1b2c3997fd4a8f6b6b9a5ce9fa9 203 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 203 27.447 T 29-03-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05415 c3a5e1b2c3997fd4a8f6b6b9a5ce9fa9 203 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 9 176 1.0E-46 T 29-03-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05415 c3a5e1b2c3997fd4a8f6b6b9a5ce9fa9 203 Gene3D G3DSA:3.40.50.2020 1 203 6.5E-36 T 29-03-2018 CFE88_RS12285 a8927eda6eccfeb29a0c0b17122f1312 125 Pfam PF08349 Protein of unknown function (DUF1722) 15 122 3.7E-26 T 29-03-2018 IPR013560 Domain of unknown function DUF1722 CFE88_RS12285 a8927eda6eccfeb29a0c0b17122f1312 125 PIRSF PIRSF032441 1 125 6.8E-53 T 29-03-2018 IPR016996 Uncharacterised conserved protein UCP032441 CFE88_RS10230 54ff9774727468df7aed0cd87e1c68d8 257 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 251 4.0E-102 T 29-03-2018 IPR007595 Csa1 family CFE88_RS10230 54ff9774727468df7aed0cd87e1c68d8 257 Pfam PF04507 Csa1 family 1 253 9.5E-120 T 29-03-2018 IPR007595 Csa1 family CFE88_RS01690 8e7b09283e7ef41da4b655b5787ca4a9 290 SMART SM00382 25 196 5.3E-6 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01690 8e7b09283e7ef41da4b655b5787ca4a9 290 SUPERFAMILY SSF52540 2 205 4.2E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01690 8e7b09283e7ef41da4b655b5787ca4a9 290 Pfam PF00005 ABC transporter 16 148 1.4E-23 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS01690 8e7b09283e7ef41da4b655b5787ca4a9 290 Gene3D G3DSA:3.40.50.300 1 277 2.4E-46 T 29-03-2018 CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 128 7.3E-26 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 SMART SM00226 4 131 1.8E-57 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 TIGRFAM TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin) 6 128 1.2E-63 T 29-03-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 SUPERFAMILY SSF52788 6 128 4.32E-44 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 Hamap MF_01624 Protein ArsC [arsC]. 1 131 44.07 T 29-03-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 CFE88_RS09985 419ffbcdbbee49a03e0a2734498e8706 131 Gene3D G3DSA:3.40.50.2300 1 131 5.0E-43 T 29-03-2018 CFE88_RS00780 386da3c455a41bbcf1b79fa9f313de96 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 3.8E-46 T 29-03-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00780 386da3c455a41bbcf1b79fa9f313de96 130 Gene3D G3DSA:3.30.230.10 3 130 3.0E-51 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00780 386da3c455a41bbcf1b79fa9f313de96 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.996 T 29-03-2018 IPR023035 Ribosomal protein S9, bacterial/plastid CFE88_RS00780 386da3c455a41bbcf1b79fa9f313de96 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 29-03-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 CFE88_RS00780 386da3c455a41bbcf1b79fa9f313de96 130 SUPERFAMILY SSF54211 6 130 4.55E-48 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS01040 18e4705edbd50db5c7ca6419f270e9de 218 Gene3D G3DSA:3.40.50.720 1 217 3.7E-29 T 29-03-2018 CFE88_RS01040 18e4705edbd50db5c7ca6419f270e9de 218 SUPERFAMILY SSF51735 1 205 1.13E-36 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS01040 18e4705edbd50db5c7ca6419f270e9de 218 Pfam PF13460 NAD(P)H-binding 7 192 9.4E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 490 2.3E-253 T 29-03-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Gene3D G3DSA:3.30.70.20 199 236 5.5E-18 T 29-03-2018 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Gene3D G3DSA:3.30.70.20 237 363 7.1E-29 T 29-03-2018 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 359 439 3.2E-28 T 29-03-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 SUPERFAMILY SSF54862 2 480 7.12E-162 T 29-03-2018 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Pfam PF13247 4Fe-4S dicluster domain 176 272 2.0E-36 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Gene3D G3DSA:1.10.3650.10 364 437 2.2E-27 T 29-03-2018 CFE88_RS12210 a6a520fe3ec7326107962a9ca9c2b078 517 Gene3D G3DSA:3.30.70.20 5 198 1.9E-28 T 29-03-2018 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4 415 5.2E-156 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 Gene3D G3DSA:3.65.10.10 223 417 1.1E-45 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 407 6.6E-88 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 Gene3D G3DSA:3.65.10.10 23 222 1.3E-40 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 3 417 39.058 T 29-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01155 9ae47d9ff6ab8a568f332b7ceacd83ff 419 SUPERFAMILY SSF55205 5 416 1.05E-123 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CFE88_RS00015 a40de776e5b2d565f3ef559616f48fbe 133 Gene3D G3DSA:3.40.630.30 3 132 7.1E-14 T 29-03-2018 CFE88_RS00015 a40de776e5b2d565f3ef559616f48fbe 133 Pfam PF13673 Acetyltransferase (GNAT) domain 26 125 7.5E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS00015 a40de776e5b2d565f3ef559616f48fbe 133 SUPERFAMILY SSF55729 12 129 1.22E-20 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12385 8c86b3e76848151a398122c8eeb225b6 88 Gene3D G3DSA:3.30.2310.20 4 88 1.8E-25 T 29-03-2018 CFE88_RS12385 8c86b3e76848151a398122c8eeb225b6 88 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 8 88 9.7E-31 T 29-03-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CFE88_RS12385 8c86b3e76848151a398122c8eeb225b6 88 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 8 88 4.1E-37 T 29-03-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CFE88_RS12385 8c86b3e76848151a398122c8eeb225b6 88 SUPERFAMILY SSF143011 5 87 1.96E-24 T 29-03-2018 IPR035095 Toxin RelE-like domain CFE88_RS12350 8c86b3e76848151a398122c8eeb225b6 88 Gene3D G3DSA:3.30.2310.20 4 88 1.8E-25 T 29-03-2018 CFE88_RS12350 8c86b3e76848151a398122c8eeb225b6 88 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 8 88 9.7E-31 T 29-03-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CFE88_RS12350 8c86b3e76848151a398122c8eeb225b6 88 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 8 88 4.1E-37 T 29-03-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CFE88_RS12350 8c86b3e76848151a398122c8eeb225b6 88 SUPERFAMILY SSF143011 5 87 1.96E-24 T 29-03-2018 IPR035095 Toxin RelE-like domain CFE88_RS11770 9dbaccfa8c615e489a1301a9b0eabba8 255 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 39.784 T 29-03-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CFE88_RS11770 9dbaccfa8c615e489a1301a9b0eabba8 255 Gene3D G3DSA:3.20.20.70 1 253 1.1E-48 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11770 9dbaccfa8c615e489a1301a9b0eabba8 255 SUPERFAMILY SSF110399 1 239 5.49E-76 T 29-03-2018 CFE88_RS11770 9dbaccfa8c615e489a1301a9b0eabba8 255 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 248 1.0E-100 T 29-03-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CFE88_RS03800 715cd74017daae64682891c9475923e2 241 Gene3D G3DSA:3.40.50.2300 2 128 3.8E-40 T 29-03-2018 CFE88_RS03800 715cd74017daae64682891c9475923e2 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 4.9E-28 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS03800 715cd74017daae64682891c9475923e2 241 SUPERFAMILY SSF52172 5 189 3.77E-43 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS03800 715cd74017daae64682891c9475923e2 241 Pfam PF00072 Response regulator receiver domain 5 113 7.1E-32 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS03800 715cd74017daae64682891c9475923e2 241 SMART SM00862 154 231 2.1E-26 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS03800 715cd74017daae64682891c9475923e2 241 Gene3D G3DSA:1.10.10.10 129 238 2.7E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03800 715cd74017daae64682891c9475923e2 241 SMART SM00448 3 113 9.8E-47 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 Pfam PF01545 Cation efflux family 18 211 1.3E-48 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 SUPERFAMILY SSF160240 215 291 1.44E-12 T 29-03-2018 CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 SUPERFAMILY SSF161111 13 212 3.92E-57 T 29-03-2018 CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 Gene3D G3DSA:1.20.1510.10 13 209 2.2E-57 T 29-03-2018 CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 Gene3D G3DSA:3.30.70.1350 210 294 3.0E-16 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS12630 2b6ee0c572ad5d9a7fbf8847df5d538c 313 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 293 2.6E-93 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS08895 88bec5b7a12d6ed305e7e0d81606f0ad 87 PIRSF PIRSF037257 1 85 4.9E-38 T 29-03-2018 IPR009366 Protein Veg GO:0042710 CFE88_RS08895 88bec5b7a12d6ed305e7e0d81606f0ad 87 Gene3D G3DSA:2.30.30.100 2 76 8.1E-33 T 29-03-2018 CFE88_RS08895 88bec5b7a12d6ed305e7e0d81606f0ad 87 Pfam PF06257 Biofilm formation stimulator VEG 4 74 1.3E-31 T 29-03-2018 IPR009366 Protein Veg GO:0042710 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 SUPERFAMILY SSF46785 2 84 1.12E-21 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 3.2E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 3.2E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 3.2E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 3.2E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 Gene3D G3DSA:1.10.10.10 1 95 2.1E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 3.0E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 SMART SM00418 8 82 6.5E-21 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS08420 faca06300eb2fc934134782146f7edef 105 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 31 49 - T 29-03-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 304 1.6E-119 T 29-03-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 Gene3D G3DSA:3.50.50.60 1 128 6.3E-25 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 Gene3D G3DSA:3.50.50.60 129 237 2.2E-22 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 SUPERFAMILY SSF51905 2 303 2.0E-57 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 293 3.0E-52 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 194 210 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 267 285 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 233 254 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 105 113 1.4E-68 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 Gene3D G3DSA:3.50.50.60 238 310 5.2E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.4E-36 T 29-03-2018 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 1.4E-36 T 29-03-2018 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-36 T 29-03-2018 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 1.4E-36 T 29-03-2018 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 1.4E-36 T 29-03-2018 CFE88_RS07355 bde126fbf3c4d87b5395d9a0993e1161 310 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 134 154 - T 29-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CFE88_RS06085 36d58247d6d3d3ee889057480aea2dda 140 SUPERFAMILY SSF55729 6 138 1.89E-34 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06085 36d58247d6d3d3ee889057480aea2dda 140 Pfam PF13673 Acetyltransferase (GNAT) domain 38 138 4.8E-18 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS06085 36d58247d6d3d3ee889057480aea2dda 140 Gene3D G3DSA:3.40.630.30 2 139 1.9E-31 T 29-03-2018 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 PIRSF PIRSF002131 1 129 5.2E-54 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.3E-59 T 29-03-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 Gene3D G3DSA:3.30.420.80 5 129 3.7E-44 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 34.334 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 SUPERFAMILY SSF53137 14 129 1.57E-49 T 29-03-2018 CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 29-03-2018 IPR018102 Ribosomal S11, conserved site CFE88_RS00740 906b21b97335983e7468dda8c73a8507 129 Pfam PF00411 Ribosomal protein S11 19 128 6.7E-51 T 29-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CFE88_RS01315 6222e343a87a2fbc11577eabd6529378 212 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 8 205 5.2E-61 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01315 6222e343a87a2fbc11577eabd6529378 212 Pfam PF02581 Thiamine monophosphate synthase 9 194 4.4E-57 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01315 6222e343a87a2fbc11577eabd6529378 212 Gene3D G3DSA:3.20.20.70 2 210 9.7E-39 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS01315 6222e343a87a2fbc11577eabd6529378 212 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 7 212 26.364 T 29-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01315 6222e343a87a2fbc11577eabd6529378 212 SUPERFAMILY SSF51391 5 210 1.07E-61 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 PRINTS PR00625 DnaJ domain signature 41 61 3.1E-32 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 PRINTS PR00625 DnaJ domain signature 61 80 3.1E-32 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 PRINTS PR00625 DnaJ domain signature 7 25 3.1E-32 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 PRINTS PR00625 DnaJ domain signature 25 40 3.1E-32 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SUPERFAMILY SSF46565 1 101 4.84E-38 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 369 40.589 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Gene3D G3DSA:2.10.230.10 140 208 2.6E-15 T 29-03-2018 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 349 1.4E-140 T 29-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Gene3D G3DSA:2.60.260.20 209 254 4.7E-10 T 29-03-2018 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Gene3D G3DSA:2.60.260.20 255 366 5.4E-29 T 29-03-2018 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Gene3D G3DSA:1.10.287.110 1 111 1.7E-39 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Pfam PF00684 DnaJ central domain 143 207 2.1E-13 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Pfam PF01556 DnaJ C terminal domain 116 333 1.1E-42 T 29-03-2018 IPR002939 Chaperone DnaJ, C-terminal CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SUPERFAMILY SSF49493 214 255 5.23E-20 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SUPERFAMILY SSF49493 110 151 5.23E-20 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SUPERFAMILY SSF49493 259 344 3.4E-23 T 29-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SMART SM00271 4 61 4.9E-33 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 Pfam PF00226 DnaJ domain 5 66 3.0E-28 T 29-03-2018 IPR001623 DnaJ domain CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 29-03-2018 IPR018253 DnaJ domain, conserved site CFE88_RS03355 b31a72cec7399038e7c6818a3c4d3c38 373 SUPERFAMILY SSF57938 130 210 1.44E-18 T 29-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 SMART SM00529 24 123 2.1E-50 T 29-03-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 SUPERFAMILY SSF46785 2 61 5.56E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 SUPERFAMILY SSF47979 63 137 7.59E-26 T 29-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Gene3D G3DSA:2.30.30.90 124 214 1.4E-8 T 29-03-2018 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Pfam PF04023 FeoA domain 147 213 1.3E-8 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Gene3D G3DSA:1.10.10.10 2 70 1.0E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 SMART SM00899 142 214 2.5E-4 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 1 60 3.7E-25 T 29-03-2018 IPR022687 DTXR-type HTH domain GO:0003677 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 63 131 8.9E-28 T 29-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 CFE88_RS08040 98757a89417afcfeb9e4b67470300fb9 214 Gene3D G3DSA:1.10.60.10 73 123 6.0E-23 T 29-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 SUPERFAMILY SSF52402 2 169 7.72E-45 T 29-03-2018 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 8 16 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 Pfam PF00764 Arginosuccinate synthase 6 389 2.4E-168 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 Gene3D G3DSA:3.90.1260.10 161 351 1.6E-84 T 29-03-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 SUPERFAMILY SSF69864 169 394 1.31E-91 T 29-03-2018 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 TIGRFAM TIGR00032 argG: argininosuccinate synthase 4 390 3.1E-158 T 29-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 115 126 - T 29-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 Hamap MF_00005 Argininosuccinate synthase [argG]. 2 395 53.071 T 29-03-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 Gene3D G3DSA:1.20.5.470 362 394 2.7E-9 T 29-03-2018 CFE88_RS06715 727c29e713c123c5289bc1b09492b035 401 Gene3D G3DSA:3.40.50.620 1 160 4.6E-25 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05960 91d8641c6a09c8404e6fa511f7d8bf8a 591 Pfam PF06100 MCRA family 23 520 1.2E-222 T 29-03-2018 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 CFE88_RS05960 91d8641c6a09c8404e6fa511f7d8bf8a 591 SUPERFAMILY SSF51905 28 132 6.8E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05960 91d8641c6a09c8404e6fa511f7d8bf8a 591 SUPERFAMILY SSF51905 159 274 6.8E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05960 91d8641c6a09c8404e6fa511f7d8bf8a 591 Gene3D G3DSA:3.50.50.60 27 506 1.5E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11975 b61470376bdc3b5fb90a0d91cf110fb3 559 PIRSF PIRSF006060 1 464 1.3E-67 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS11975 b61470376bdc3b5fb90a0d91cf110fb3 559 PIRSF PIRSF006060 466 512 23.0 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS11975 b61470376bdc3b5fb90a0d91cf110fb3 559 Pfam PF13520 Amino acid permease 12 432 1.6E-41 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 Pfam PF13377 Periplasmic binding protein-like domain 169 328 1.0E-29 T 29-03-2018 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 TIGRFAM TIGR01481 ccpA: catabolite control protein A 1 329 1.2E-165 T 29-03-2018 IPR006377 Catabolite control protein A GO:0006355 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 SUPERFAMILY SSF53822 62 328 1.5E-71 T 29-03-2018 IPR028082 Periplasmic binding protein-like I CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 Gene3D G3DSA:3.40.50.2300 176 311 1.1E-34 T 29-03-2018 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 SUPERFAMILY SSF47413 2 60 1.48E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 6.7E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 Gene3D G3DSA:1.10.260.40 3 55 2.2E-23 T 29-03-2018 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 29-03-2018 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 Gene3D G3DSA:3.40.50.2300 56 175 1.5E-33 T 29-03-2018 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 SMART SM00354 2 72 2.4E-38 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 1.5E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS02660 cf37ffe778561ce2b0d4cf8ef093266a 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 1.5E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS09265 79d625e594e88c81bd875f20dcc83729 265 Gene3D G3DSA:1.10.3100.10 1 169 8.3E-15 T 29-03-2018 IPR027910 YdiL-like domain CFE88_RS09265 79d625e594e88c81bd875f20dcc83729 265 Pfam PF01381 Helix-turn-helix 13 73 7.6E-6 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS09265 79d625e594e88c81bd875f20dcc83729 265 SUPERFAMILY SSF47413 5 80 8.3E-10 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS09265 79d625e594e88c81bd875f20dcc83729 265 SMART SM00530 11 74 2.4E-4 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 Pfam PF01189 16S rRNA methyltransferase RsmB/F 242 431 8.7E-56 T 29-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 Gene3D G3DSA:3.40.50.150 233 435 3.4E-58 T 29-03-2018 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 Gene3D G3DSA:1.10.940.10 1 142 5.1E-27 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 SUPERFAMILY SSF53335 138 432 1.67E-69 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 Gene3D G3DSA:3.30.70.1170 177 232 5.9E-6 T 29-03-2018 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 6 433 3.4E-119 T 29-03-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 Pfam PF01029 NusB family 4 125 4.5E-30 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 SUPERFAMILY SSF48013 4 151 3.79E-34 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 224 238 1.6E-30 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 415 432 1.6E-30 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 253 263 1.6E-30 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 1.6E-30 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05360 05c499ed876d576bce35e7b797f3fc61 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 1.6E-30 T 29-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 180 238 2.3E-11 T 29-03-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 SUPERFAMILY SSF55120 1 238 7.48E-78 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 3 217 1.0E-77 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 304 18.536 T 29-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 24 179 2.3E-56 T 29-03-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 CFE88_RS05090 f3e4d8f2b5cc70ddca8b70c37839bc50 305 Gene3D G3DSA:3.30.2350.10 1 229 3.5E-80 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 SUPERFAMILY SSF55424 348 472 4.98E-32 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Gene3D G3DSA:3.50.50.60 127 258 6.3E-27 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PIRSF PIRSF000350 1 466 5.4E-81 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Gene3D G3DSA:3.50.50.60 259 339 4.0E-9 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Gene3D G3DSA:1.10.287.990 48 105 6.1E-22 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Gene3D G3DSA:3.40.50.720 5 47 0.088 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 SUPERFAMILY SSF51905 89 341 8.91E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 SUPERFAMILY SSF51905 1 62 8.91E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 332 2.6E-61 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Gene3D G3DSA:3.30.390.30 340 471 3.2E-33 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 352 461 2.2E-27 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 283 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 312 319 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 2.2E-66 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 284 3.6E-38 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 3.6E-38 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 297 319 3.6E-38 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 3.6E-38 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 3.6E-38 T 29-03-2018 CFE88_RS03690 3e8611bea02104959c4bdf19f2edb4f5 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 5 473 1.5E-154 T 29-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 28 42 - T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 Pfam PF00209 Sodium:neurotransmitter symporter family 6 115 2.1E-19 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 Pfam PF00209 Sodium:neurotransmitter symporter family 151 441 2.3E-26 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 SUPERFAMILY SSF161070 5 441 6.28E-113 T 29-03-2018 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 422 442 9.3E-16 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 41 60 9.3E-16 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 9.3E-16 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS09095 9319b0d8a7135ca8a8ad2bf91c7f3b5c 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 12 33 9.3E-16 T 29-03-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 Gene3D G3DSA:3.40.50.1980 21 187 7.0E-46 T 29-03-2018 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 248 266 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 32 50 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 274 293 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 63 76 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 195 216 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00690 Adhesin family signature 76 93 5.9E-48 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 SUPERFAMILY SSF53807 12 308 1.44E-81 T 29-03-2018 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 305 3.1E-70 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 266 284 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 76 95 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 195 212 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 244 261 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 32 53 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 137 156 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 221 239 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 287 305 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 PRINTS PR00691 Adhesin B signature 57 75 6.4E-78 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS08055 2b3377cf6e2823d95d2e29e7dae07907 309 Gene3D G3DSA:3.40.50.1980 188 309 1.1E-31 T 29-03-2018 CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 Gene3D G3DSA:3.40.50.300 1 243 4.1E-74 T 29-03-2018 CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 Pfam PF00005 ABC transporter 18 166 1.7E-37 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 PIRSF PIRSF039085 1 242 1.6E-106 T 29-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 SUPERFAMILY SSF52540 1 235 2.99E-79 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12135 b7974f942951a508d5575ded3a765092 243 SMART SM00382 26 231 9.5E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS00160 65aef131f70318e27b54ee45e8693a29 186 Pfam PF08006 Protein of unknown function (DUF1700) 1 182 4.0E-71 T 29-03-2018 IPR012963 Protein of unknown function DUF1700 CFE88_RS04060 c9756991b03afb16c2cfa54fb87b5f8b 90 Gene3D G3DSA:3.40.50.300 14 44 7.9E-5 T 29-03-2018 CFE88_RS04060 c9756991b03afb16c2cfa54fb87b5f8b 90 SUPERFAMILY SSF52540 1 90 3.72E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04060 c9756991b03afb16c2cfa54fb87b5f8b 90 Gene3D G3DSA:3.40.50.300 45 90 7.2E-15 T 29-03-2018 CFE88_RS04060 c9756991b03afb16c2cfa54fb87b5f8b 90 Pfam PF00005 ABC transporter 22 79 9.0E-12 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 53 304 3.7E-70 T 29-03-2018 CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 SUPERFAMILY SSF53850 66 313 6.5E-51 T 29-03-2018 CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 Gene3D G3DSA:3.40.190.10 151 300 1.7E-36 T 29-03-2018 CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 Gene3D G3DSA:3.40.190.10 45 142 8.2E-11 T 29-03-2018 CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 SMART SM00062 48 294 2.6E-4 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS10710 36706317599b3ac4e069694fb51c8ac1 318 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 276 3.8E-75 T 29-03-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 CFE88_RS03410 f30d0b7fe6b36ff0c240b625351dc00d 134 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 106 7.2E-14 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS03410 f30d0b7fe6b36ff0c240b625351dc00d 134 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 6 133 2.1E-48 T 29-03-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 CFE88_RS03410 f30d0b7fe6b36ff0c240b625351dc00d 134 Gene3D G3DSA:3.40.140.10 2 134 1.0E-45 T 29-03-2018 CFE88_RS03410 f30d0b7fe6b36ff0c240b625351dc00d 134 SUPERFAMILY SSF53927 5 133 4.42E-43 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 Hamap MF_00520 Ribulokinase [araB]. 1 536 46.201 T 29-03-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 Gene3D G3DSA:3.30.420.40 275 532 1.4E-47 T 29-03-2018 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 284 477 2.4E-37 T 29-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 273 2.2E-14 T 29-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 SUPERFAMILY SSF53067 3 276 1.61E-33 T 29-03-2018 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 Gene3D G3DSA:3.30.420.40 1 274 2.2E-40 T 29-03-2018 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 PIRSF PIRSF000538 1 533 1.4E-47 T 29-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CFE88_RS00180 5d1d7b5d8a0fe219bc1c7053043d9dc9 536 SUPERFAMILY SSF53067 275 528 2.29E-48 T 29-03-2018 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 Pfam PF13180 PDZ domain 191 265 8.0E-11 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 SMART SM00228 187 258 8.0E-6 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 1 427 3.0E-90 T 29-03-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 SUPERFAMILY SSF50156 176 266 5.39E-17 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 Gene3D G3DSA:2.30.42.10 199 292 4.5E-17 T 29-03-2018 CFE88_RS05135 f160e5563fcf52138ec90f19219ba42b 428 Pfam PF02163 Peptidase family M50 10 413 1.3E-74 T 29-03-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889|Reactome: R-MMU-8963889 CFE88_RS11965 601860b36a5800ea3ed48312c381ed7c 392 Pfam PF07690 Major Facilitator Superfamily 10 326 4.8E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS11965 601860b36a5800ea3ed48312c381ed7c 392 Gene3D G3DSA:1.20.1250.20 4 193 1.0E-25 T 29-03-2018 CFE88_RS11965 601860b36a5800ea3ed48312c381ed7c 392 SUPERFAMILY SSF103473 8 390 1.44E-57 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS11965 601860b36a5800ea3ed48312c381ed7c 392 Gene3D G3DSA:1.20.1250.20 201 391 7.4E-21 T 29-03-2018 CFE88_RS06430 8344006f8e5f34e92754d364cbc732d4 103 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 1 95 1.8E-28 T 29-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06430 8344006f8e5f34e92754d364cbc732d4 103 Gene3D G3DSA:3.30.360.10 1 97 1.1E-25 T 29-03-2018 CFE88_RS06430 8344006f8e5f34e92754d364cbc732d4 103 SUPERFAMILY SSF55347 2 95 3.92E-27 T 29-03-2018 CFE88_RS11795 f9cae50ad1249286a68daa4ecc7ea953 96 Gene3D G3DSA:3.30.70.100 1 96 3.2E-20 T 29-03-2018 CFE88_RS11795 f9cae50ad1249286a68daa4ecc7ea953 96 SUPERFAMILY SSF54909 1 93 4.54E-26 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS11795 f9cae50ad1249286a68daa4ecc7ea953 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 75 7.7E-18 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 145 2.4E-45 T 29-03-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 5 313 44.499 T 29-03-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 175 181 - T 29-03-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 10 306 5.8E-126 T 29-03-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 Gene3D G3DSA:3.90.110.10 147 316 1.5E-46 T 29-03-2018 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 Gene3D G3DSA:3.40.50.720 7 146 4.9E-34 T 29-03-2018 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 2.0E-43 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PRINTS PR00086 L-lactate dehydrogenase signature 143 161 2.0E-43 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PRINTS PR00086 L-lactate dehydrogenase signature 32 56 2.0E-43 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PRINTS PR00086 L-lactate dehydrogenase signature 119 139 2.0E-43 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PRINTS PR00086 L-lactate dehydrogenase signature 173 186 2.0E-43 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 SUPERFAMILY SSF56327 146 312 4.76E-55 T 29-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 SUPERFAMILY SSF51735 5 145 1.32E-50 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 PIRSF PIRSF000102 3 315 7.2E-105 T 29-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CFE88_RS11370 cbb596f6727be32eb447a2eec2b92878 316 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 148 314 5.6E-35 T 29-03-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 SUPERFAMILY SSF54197 1 137 1.21E-42 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 PRINTS PR00332 Histidine triad family signature 5 21 8.9E-17 T 29-03-2018 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 PRINTS PR00332 Histidine triad family signature 26 44 8.9E-17 T 29-03-2018 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 PRINTS PR00332 Histidine triad family signature 93 103 8.9E-17 T 29-03-2018 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 Pfam PF01230 HIT domain 12 107 2.2E-26 T 29-03-2018 IPR001310 Histidine triad (HIT) protein CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 ProSitePatterns PS00892 HIT domain signature. 86 104 - T 29-03-2018 IPR019808 Histidine triad, conserved site CFE88_RS02300 069e6ffc066befe2b4b675f4b7d0fe48 141 Gene3D G3DSA:3.30.428.10 1 141 1.1E-38 T 29-03-2018 IPR011146 HIT-like domain GO:0003824 CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 SUPERFAMILY SSF46589 244 308 1.73E-16 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 Gene3D G3DSA:3.40.630.30 168 389 2.4E-36 T 29-03-2018 CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 Pfam PF02388 FemAB family 6 411 1.2E-149 T 29-03-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 SUPERFAMILY SSF55729 1 164 2.91E-57 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 Gene3D G3DSA:3.40.630.30 1 167 1.0E-29 T 29-03-2018 CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 SUPERFAMILY SSF55729 166 244 1.17E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12140 6625e41f94e33d8f40cfd141510511b6 415 SUPERFAMILY SSF55729 310 407 1.17E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Pfam PF02881 SRP54-type protein, helical bundle domain 6 83 3.0E-22 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 SUPERFAMILY SSF52540 43 355 1.04E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 SMART SM00963 2 87 1.2E-32 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 6 448 35.36 T 29-03-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Gene3D G3DSA:1.20.120.140 1 92 6.5E-30 T 29-03-2018 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 SMART SM00962 101 297 1.7E-116 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Gene3D G3DSA:3.40.50.300 102 173 8.8E-8 T 29-03-2018 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Gene3D G3DSA:1.10.260.30 328 432 8.2E-40 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 SMART SM00382 100 302 1.6E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Pfam PF02978 Signal peptide binding domain 329 427 8.1E-35 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 429 5.5E-191 T 29-03-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 SUPERFAMILY SSF47446 329 430 2.94E-38 T 29-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Gene3D G3DSA:1.20.120.140 196 311 4.9E-32 T 29-03-2018 CFE88_RS05260 063c3fb6c0f1dfd0fbc4546751e13b8b 455 Pfam PF00448 SRP54-type protein, GTPase domain 101 297 2.6E-77 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 48 257 1.7E-52 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 SUPERFAMILY SSF53850 41 259 8.32E-54 T 29-03-2018 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 Gene3D G3DSA:3.40.190.10 39 131 9.3E-22 T 29-03-2018 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 Gene3D G3DSA:3.40.190.10 132 225 4.8E-26 T 29-03-2018 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 Pfam PF13531 Bacterial extracellular solute-binding protein 43 259 1.5E-37 T 29-03-2018 CFE88_RS00480 91673baea040b9647dc002f4aa0525a7 261 PIRSF PIRSF004846 1 261 3.2E-75 T 29-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 Gene3D G3DSA:3.40.50.300 2 251 9.6E-45 T 29-03-2018 CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 SUPERFAMILY SSF52540 4 232 2.92E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 5 245 3.6E-112 T 29-03-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 SMART SM00382 29 224 1.0E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS06960 8a1860618c83197bb053ba74e5e4f0e5 253 Pfam PF00005 ABC transporter 20 172 7.5E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 123 143 8.9E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 169 184 8.9E-6 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 Gene3D G3DSA:1.10.1580.10 180 273 1.4E-21 T 29-03-2018 IPR023179 GTP-binding protein, orthogonal bundle domain CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 279 1.3E-110 T 29-03-2018 IPR019991 GTP-binding protein, ribosome biogenesis CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 PIRSF PIRSF006230 1 284 2.3E-96 T 29-03-2018 IPR016478 GTPase, MTG1 CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 Pfam PF01926 50S ribosome-binding GTPase 123 205 5.6E-18 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 SUPERFAMILY SSF52540 9 259 6.01E-48 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05220 9c7b4f81d1eca9586b804027cfd005be 287 Gene3D G3DSA:3.40.50.300 12 179 3.0E-34 T 29-03-2018 CFE88_RS01710 b0d9cd673358f199502cd88c07e85e90 185 Pfam PF08006 Protein of unknown function (DUF1700) 1 181 2.1E-64 T 29-03-2018 IPR012963 Protein of unknown function DUF1700 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 SUPERFAMILY SSF103473 248 468 2.09E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 SUPERFAMILY SSF103473 6 197 2.09E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 1.0E-11 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 PRINTS PR01036 Tetracycline resistance protein TetB signature 400 419 1.0E-11 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.0E-11 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 1.0E-11 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 PRINTS PR01036 Tetracycline resistance protein TetB signature 302 326 1.0E-11 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 426 1.5E-99 T 29-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 Gene3D G3DSA:1.20.1250.20 259 478 7.3E-30 T 29-03-2018 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 Pfam PF07690 Major Facilitator Superfamily 19 409 4.8E-54 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS00940 287f77ead85a7964065bae8dbc71a4c5 479 Gene3D G3DSA:1.20.1250.20 3 205 2.9E-34 T 29-03-2018 CFE88_RS10395 e1f5a32b36bcad744c877892db3491af 211 SUPERFAMILY SSF161098 10 194 8.9E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10395 e1f5a32b36bcad744c877892db3491af 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 204 3.6E-24 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10395 e1f5a32b36bcad744c877892db3491af 211 Gene3D G3DSA:1.10.3720.10 3 207 4.4E-30 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 29-03-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 SUPERFAMILY SSF51735 1 122 1.28E-41 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 Gene3D G3DSA:3.40.50.720 1 119 8.5E-43 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 285 4.1E-144 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 Pfam PF02629 CoA binding domain 6 99 2.4E-29 T 29-03-2018 IPR003781 CoA-binding GO:0048037 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 PIRSF PIRSF001553 1 291 2.1E-131 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 SMART SM00881 4 100 1.1E-30 T 29-03-2018 IPR003781 CoA-binding GO:0048037 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 29-03-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.5E-39 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.5E-39 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.5E-39 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.5E-39 T 29-03-2018 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 SUPERFAMILY SSF52210 123 284 9.81E-53 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 Gene3D G3DSA:3.40.50.261 120 301 9.0E-54 T 29-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 Pfam PF00549 CoA-ligase 151 266 1.8E-18 T 29-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CFE88_RS05205 9907bd92e16cc17db00e77443235d8b7 302 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 42.67 T 29-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Gene3D G3DSA:3.40.50.300 197 356 4.5E-34 T 29-03-2018 CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 SMART SM00487 11 205 7.6E-34 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 SUPERFAMILY SSF52540 22 331 1.28E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Gene3D G3DSA:3.40.50.300 1 195 5.3E-35 T 29-03-2018 CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Pfam PF16124 RecQ zinc-binding 387 427 3.5E-6 T 29-03-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Gene3D G3DSA:1.10.10.10 357 444 1.1E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 6 343 4.7E-97 T 29-03-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Pfam PF00271 Helicase conserved C-terminal domain 213 318 6.7E-20 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 129 138 - T 29-03-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 Pfam PF00270 DEAD/DEAH box helicase 18 176 2.1E-20 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS03830 603aed1187f92ff3bb0629168a111530 459 SMART SM00490 238 319 7.5E-25 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 Gene3D G3DSA:3.30.499.10 1 153 7.4E-40 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 Pfam PF00330 Aconitase family (aconitate hydratase) 7 446 5.7E-149 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 454 2.8E-215 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 SUPERFAMILY SSF53732 1 453 5.1E-162 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 455 57.275 T 29-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 ProSitePatterns PS01244 Aconitase family signature 2. 388 401 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 Gene3D G3DSA:3.40.1060.10 154 284 3.2E-43 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 Gene3D G3DSA:3.30.499.10 314 455 4.9E-47 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 107 115 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 132 147 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 388 401 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 332 343 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 81 94 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 208 221 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 282 296 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 118 131 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 PRINTS PR00415 Aconitase family signature 194 207 9.3E-45 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01475 48aad196bfb6a4405693872c006bd9f9 456 ProSitePatterns PS00450 Aconitase family signature 1. 328 344 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 Pfam PF08360 QacR-like protein, C-terminal region 55 186 5.1E-61 T 29-03-2018 IPR013571 Transcription regulator QacR, C-terminal GO:0003700|GO:0045892 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 SUPERFAMILY SSF46689 2 63 1.64E-15 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 ProSitePatterns PS01081 TetR-type HTH domain signature. 17 47 - T 29-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 49 1.2E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 1.2E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 Gene3D G3DSA:1.10.10.60 38 73 2.2E-8 T 29-03-2018 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 SUPERFAMILY SSF48498 71 184 9.56E-39 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 Gene3D G3DSA:1.10.10.60 1 37 1.9E-11 T 29-03-2018 CFE88_RS12580 f5b77bdd4e4326a1c31aef1e0b019603 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 51 2.2E-14 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS09650 c64ac1922636a891b30019f652f8d1dd 179 Gene3D G3DSA:1.10.260.40 43 142 3.5E-4 T 29-03-2018 CFE88_RS09650 c64ac1922636a891b30019f652f8d1dd 179 SUPERFAMILY SSF46689 9 68 7.98E-10 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS09650 c64ac1922636a891b30019f652f8d1dd 179 Gene3D G3DSA:1.10.10.60 1 42 3.8E-8 T 29-03-2018 CFE88_RS09650 c64ac1922636a891b30019f652f8d1dd 179 SUPERFAMILY SSF48498 75 177 2.89E-10 T 29-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CFE88_RS09650 c64ac1922636a891b30019f652f8d1dd 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 56 6.2E-5 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 SUPERFAMILY SSF52540 723 868 3.51E-30 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 SUPERFAMILY SSF52540 576 680 3.51E-30 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 SUPERFAMILY SSF52540 24 282 1.41E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 Gene3D G3DSA:3.40.50.300 591 947 2.0E-30 T 29-03-2018 CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 44 208 6.4E-12 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 Gene3D G3DSA:3.40.50.300 3 411 8.2E-30 T 29-03-2018 CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 Pfam PF00350 Dynamin family 592 803 1.3E-37 T 29-03-2018 IPR022812 Dynamin superfamily CFE88_RS04015 923a71788fde4391d8e45c1bd2d789c5 1145 Pfam PF00350 Dynamin family 45 195 5.6E-21 T 29-03-2018 IPR022812 Dynamin superfamily CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 PIRSF PIRSF015626 1 263 2.4E-75 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 Pfam PF02634 FdhD/NarQ family 27 260 5.5E-73 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 SUPERFAMILY SSF53927 5 261 1.86E-75 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 Gene3D G3DSA:3.10.20.10 29 110 1.8E-16 T 29-03-2018 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 Gene3D G3DSA:3.40.140.10 126 264 1.1E-47 T 29-03-2018 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 3 261 30.457 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 CFE88_RS00475 a4655bc4fd48792ee768f6b1eb003882 264 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 24 262 8.8E-72 T 29-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 Gene3D G3DSA:3.40.50.300 3 195 2.8E-29 T 29-03-2018 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 26 169 3.0E-12 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 195 27.053 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 Pfam PF01926 50S ribosome-binding GTPase 27 145 7.3E-21 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 9 191 8.3E-67 T 29-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CFE88_RS02945 8a81893cfe614f310f44a94dfbe66552 195 SUPERFAMILY SSF52540 4 194 3.56E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08515 0b65f4b12e38dabf415475954fdcc972 316 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 11 313 9.1E-81 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CFE88_RS08515 0b65f4b12e38dabf415475954fdcc972 316 SUPERFAMILY SSF51735 1 314 4.73E-92 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS08515 0b65f4b12e38dabf415475954fdcc972 316 PIRSF PIRSF001439 1 316 1.5E-84 T 29-03-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 CFE88_RS08515 0b65f4b12e38dabf415475954fdcc972 316 Gene3D G3DSA:3.30.1780.10 1 135 3.4E-40 T 29-03-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 CFE88_RS08515 0b65f4b12e38dabf415475954fdcc972 316 Gene3D G3DSA:3.40.50.720 136 297 5.8E-35 T 29-03-2018 CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 282 294 - T 29-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 Gene3D G3DSA:3.90.230.10 126 352 9.1E-78 T 29-03-2018 CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 SUPERFAMILY SSF53092 8 126 4.01E-24 T 29-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 SUPERFAMILY SSF55920 87 347 6.15E-78 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 Pfam PF01321 Creatinase/Prolidase N-terminal domain 4 126 4.5E-22 T 29-03-2018 IPR000587 Creatinase, N-terminal GO:0016787 CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 Pfam PF00557 Metallopeptidase family M24 134 336 3.1E-67 T 29-03-2018 IPR000994 Peptidase M24 CFE88_RS03615 27838ede0f7a03d207cd411f52ff86e0 353 Gene3D G3DSA:3.40.350.10 1 124 1.3E-26 T 29-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 86 3.3E-33 T 29-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 503 645 1.4E-37 T 29-03-2018 IPR002178 PTS EIIA type-2 domain CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 SUPERFAMILY SSF55804 504 645 2.62E-35 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 7.4E-17 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 Pfam PF02378 Phosphotransferase system, EIIC 133 408 3.6E-24 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 504 630 1.3E-37 T 29-03-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 Gene3D G3DSA:3.40.930.10 499 646 7.7E-36 T 29-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 549 565 - T 29-03-2018 IPR002178 PTS EIIA type-2 domain CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 118 461 3.0E-94 T 29-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 Gene3D G3DSA:3.40.50.2300 2 98 3.0E-39 T 29-03-2018 CFE88_RS10820 d2b30a3c93582d316ac4e36f46365ec3 646 SUPERFAMILY SSF52794 2 103 7.67E-38 T 29-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CFE88_RS06745 71f8282a0885d166a124c99063baf7a5 126 Gene3D G3DSA:2.40.50.140 16 85 5.6E-24 T 29-03-2018 CFE88_RS06745 71f8282a0885d166a124c99063baf7a5 126 Gene3D G3DSA:2.40.50.140 2 15 0.3 T 29-03-2018 CFE88_RS06745 71f8282a0885d166a124c99063baf7a5 126 Pfam PF00575 S1 RNA binding domain 6 76 4.5E-13 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS06745 71f8282a0885d166a124c99063baf7a5 126 SMART SM00316 6 76 3.3E-22 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS06745 71f8282a0885d166a124c99063baf7a5 126 SUPERFAMILY SSF50249 4 77 1.27E-20 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02540 d842efa9a4200991e35bea066afeb9d2 187 Gene3D G3DSA:3.40.50.150 3 187 8.5E-22 T 29-03-2018 CFE88_RS02540 d842efa9a4200991e35bea066afeb9d2 187 SUPERFAMILY SSF53335 7 184 1.81E-23 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02540 d842efa9a4200991e35bea066afeb9d2 187 Pfam PF06962 Putative rRNA methylase 47 184 1.6E-47 T 29-03-2018 IPR010719 Putative rRNA methylase CFE88_RS03480 7f8c76b979453a94cfd2b25cff0a0bb9 139 Gene3D G3DSA:1.10.10.10 6 91 4.2E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03480 7f8c76b979453a94cfd2b25cff0a0bb9 139 SUPERFAMILY SSF46785 5 132 5.57E-35 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03480 7f8c76b979453a94cfd2b25cff0a0bb9 139 Pfam PF01475 Ferric uptake regulator family 12 128 1.8E-35 T 29-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 PIRSF PIRSF000804 2 377 1.3E-111 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 SUPERFAMILY SSF55979 254 376 3.84E-32 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 376 2.0E-113 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 SUPERFAMILY SSF55979 136 251 1.0E-27 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Gene3D G3DSA:3.10.150.10 1 131 2.9E-27 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Pfam PF02767 DNA polymerase III beta subunit, central domain 137 251 2.1E-41 T 29-03-2018 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 SUPERFAMILY SSF55979 2 128 3.73E-24 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 254 375 3.8E-37 T 29-03-2018 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Gene3D G3DSA:3.10.150.10 257 377 8.4E-27 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Gene3D G3DSA:3.10.150.10 132 255 1.3E-34 T 29-03-2018 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 SMART SM00480 18 372 2.8E-176 T 29-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09705 f60ff3c3a78244a2ac6a2f77f9ed238e 377 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 2 128 3.7E-41 T 29-03-2018 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 Pfam PF02195 ParB-like nuclease domain 20 106 3.0E-27 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 Gene3D G3DSA:1.10.10.730 108 155 2.4E-19 T 29-03-2018 CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 Pfam PF08535 KorB domain 129 185 2.9E-5 T 29-03-2018 IPR013741 Repressor KorB domain CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 SUPERFAMILY SSF110849 18 109 5.49E-28 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 SUPERFAMILY SSF109709 99 207 2.41E-32 T 29-03-2018 CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 16 191 2.0E-60 T 29-03-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 Gene3D G3DSA:3.90.1530.10 6 107 6.1E-35 T 29-03-2018 CFE88_RS09500 beae52434959b4ef0e97786d91cfb421 280 SMART SM00470 18 107 7.6E-36 T 29-03-2018 IPR003115 ParB/Sulfiredoxin CFE88_RS00345 ad1c5b49cf333d3e9542157cf5e9bd64 258 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 116 242 3.2E-16 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS00345 ad1c5b49cf333d3e9542157cf5e9bd64 258 Gene3D G3DSA:1.10.530.10 99 247 1.1E-25 T 29-03-2018 CFE88_RS00345 ad1c5b49cf333d3e9542157cf5e9bd64 258 SMART SM00047 102 250 6.1E-42 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS07030 64ee778976b400c3d15596a039cd60bc 238 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 18 232 7.2E-55 T 29-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CFE88_RS07030 64ee778976b400c3d15596a039cd60bc 238 SUPERFAMILY SSF51569 13 234 4.76E-61 T 29-03-2018 CFE88_RS07030 64ee778976b400c3d15596a039cd60bc 238 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 6 236 33.531 T 29-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CFE88_RS07030 64ee778976b400c3d15596a039cd60bc 238 Gene3D G3DSA:3.20.20.70 1 236 6.3E-58 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS07030 64ee778976b400c3d15596a039cd60bc 238 Pfam PF01487 Type I 3-dehydroquinase 18 232 1.0E-50 T 29-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 TIGRFAM TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin) 6 128 2.3E-61 T 29-03-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 Hamap MF_01624 Protein ArsC [arsC]. 1 131 43.509 T 29-03-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 SUPERFAMILY SSF52788 3 129 1.83E-44 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 128 1.6E-25 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 Gene3D G3DSA:3.40.50.2300 1 131 5.8E-42 T 29-03-2018 CFE88_RS08430 a20d629f911c142e14dae120ded9be4e 132 SMART SM00226 4 131 8.3E-56 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 7 239 6.0E-103 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 SUPERFAMILY SSF53633 6 239 1.31E-72 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 Gene3D G3DSA:3.40.1160.10 1 240 2.3E-41 T 29-03-2018 CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 PIRSF PIRSF005650 2 240 2.6E-93 T 29-03-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 Pfam PF00696 Amino acid kinase family 8 217 2.3E-25 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS05155 8dd8c0c52d1c99d6e4fa6cab645e6ed8 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 5 239 43.219 T 29-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CFE88_RS08280 e02a14b11cd74f77bfddb41149a4e075 113 Hamap MF_01863 UPF0741 protein . 1 74 31.316 T 29-03-2018 IPR020880 Protein of unknown function UPF0741 CFE88_RS08280 e02a14b11cd74f77bfddb41149a4e075 113 Pfam PF07293 Protein of unknown function (DUF1450) 7 73 1.0E-8 T 29-03-2018 IPR009910 Protein of unknown function DUF1450 CFE88_RS12055 9e50e7c9e3c4e766bdaf129cdcdd3bf3 278 Gene3D G3DSA:1.20.120.350 50 275 0.0014 T 29-03-2018 CFE88_RS12055 9e50e7c9e3c4e766bdaf129cdcdd3bf3 278 Pfam PF02096 60Kd inner membrane protein 54 245 5.7E-38 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS12055 9e50e7c9e3c4e766bdaf129cdcdd3bf3 278 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 53 246 1.4E-42 T 29-03-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS12055 9e50e7c9e3c4e766bdaf129cdcdd3bf3 278 PRINTS PR00701 60kDa inner membrane protein signature 127 150 4.2E-6 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS12055 9e50e7c9e3c4e766bdaf129cdcdd3bf3 278 PRINTS PR00701 60kDa inner membrane protein signature 213 236 4.2E-6 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS11110 2bd535702ff80dea496a77348832a321 777 SUPERFAMILY SSF53756 9 260 4.55E-18 T 29-03-2018 CFE88_RS11110 2bd535702ff80dea496a77348832a321 777 Gene3D G3DSA:3.40.50.2000 579 719 8.9E-6 T 29-03-2018 CFE88_RS11110 2bd535702ff80dea496a77348832a321 777 Gene3D G3DSA:3.40.50.2000 35 331 1.2E-4 T 29-03-2018 CFE88_RS11110 2bd535702ff80dea496a77348832a321 777 SUPERFAMILY SSF53756 529 698 1.73E-11 T 29-03-2018 CFE88_RS11110 2bd535702ff80dea496a77348832a321 777 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 402 761 3.4E-62 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 Gene3D G3DSA:3.40.47.10 1 160 6.3E-39 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 223 311 1.2E-35 T 29-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 311 69.55 T 29-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 311 5.4E-123 T 29-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 Gene3D G3DSA:3.40.47.10 161 310 3.0E-41 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 184 3.6E-29 T 29-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CFE88_RS06635 fa32d4189c43c210fdbae63b744bbdb0 313 SUPERFAMILY SSF53901 3 311 1.96E-70 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 3 223 35.752 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 Gene3D G3DSA:3.40.1010.10 1 111 2.5E-44 T 29-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 81 92 - T 29-03-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 PIRSF PIRSF005917 1 279 4.5E-98 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 4 276 7.1E-80 T 29-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 199 1.2E-29 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 Gene3D G3DSA:3.30.950.10 112 226 3.1E-31 T 29-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS08920 7ccc2e77a6d3227e3679478e3817a546 279 SUPERFAMILY SSF53790 2 221 2.62E-78 T 29-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 7.7E-23 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 SMART SM01134 74 235 3.2E-60 T 29-03-2018 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 SUPERFAMILY SSF100950 76 234 1.32E-30 T 29-03-2018 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 Gene3D G3DSA:1.10.10.10 1 60 1.8E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.3E-11 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.3E-11 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 29-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 SMART SM00420 6 58 4.6E-24 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 Gene3D G3DSA:3.40.50.1360 66 238 6.3E-31 T 29-03-2018 CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 SUPERFAMILY SSF46785 5 65 7.22E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00790 4114fb058acee36792f313ddb04548ae 251 Pfam PF00455 DeoR C terminal sensor domain 77 233 1.7E-46 T 29-03-2018 IPR014036 DeoR C-terminal sensor domain CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 318 4.0E-30 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 Gene3D G3DSA:3.40.50.720 113 286 9.0E-51 T 29-03-2018 CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 SUPERFAMILY SSF52283 3 134 5.1E-36 T 29-03-2018 CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 SUPERFAMILY SSF51735 101 288 2.95E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 287 2.5E-60 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS06870 66931f2a06b8d80ad30e66c25e6a9766 323 Gene3D G3DSA:3.40.50.720 1 112 7.4E-32 T 29-03-2018 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 SUPERFAMILY SSF141734 8 108 6.28E-45 T 29-03-2018 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 Gene3D G3DSA:1.10.287.1080 105 198 1.0E-18 T 29-03-2018 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 3 196 34.99 T 29-03-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 26 99 3.4E-34 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 109 191 1.1E-27 T 29-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 SUPERFAMILY SSF101386 109 196 3.36E-22 T 29-03-2018 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 49 102 5.0E-26 T 29-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CFE88_RS10665 f5824d34a02ef4650d22c2a7c378ecf7 211 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 110 194 2.6E-12 T 29-03-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Gene3D G3DSA:3.10.580.10 141 269 6.2E-22 T 29-03-2018 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Pfam PF01769 Divalent cation transporter 329 450 3.9E-29 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 TIGRFAM TIGR00400 mgtE: magnesium transporter 19 458 6.8E-125 T 29-03-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Pfam PF03448 MgtE intracellular N domain 40 143 5.4E-24 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Gene3D G3DSA:1.10.357.20 285 460 1.9E-40 T 29-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SUPERFAMILY SSF161093 285 457 1.44E-51 T 29-03-2018 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SMART SM00924 40 145 8.2E-26 T 29-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SUPERFAMILY SSF54631 144 282 1.64E-33 T 29-03-2018 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Pfam PF00571 CBS domain 146 203 7.0E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Pfam PF00571 CBS domain 209 263 3.1E-10 T 29-03-2018 IPR000644 CBS domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SMART SM00116 216 264 4.2E-8 T 29-03-2018 IPR000644 CBS domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SMART SM00116 152 205 5.6 T 29-03-2018 IPR000644 CBS domain CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 SUPERFAMILY SSF158791 19 142 1.44E-27 T 29-03-2018 CFE88_RS06525 145e39fe901852fd92cc9c9973e5c13b 461 Gene3D G3DSA:1.25.60.10 6 140 2.9E-23 T 29-03-2018 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 Gene3D G3DSA:3.90.180.10 1 156 4.0E-35 T 29-03-2018 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 SMART SM00829 15 333 9.9E-9 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 SUPERFAMILY SSF50129 14 140 1.16E-27 T 29-03-2018 IPR011032 GroES-like CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 334 6.9E-97 T 29-03-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 Gene3D G3DSA:3.40.50.720 157 266 3.6E-14 T 29-03-2018 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 149 170 - T 29-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 Pfam PF00107 Zinc-binding dehydrogenase 160 253 7.5E-14 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 88 1.4E-6 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS00845 bafa7ef36fee53fade9943f070006fc7 336 SUPERFAMILY SSF51735 116 285 6.26E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS01495 b602ba38a3231c21bca81650c63b64d3 77 Gene3D G3DSA:3.30.70.260 2 77 1.0E-11 T 29-03-2018 CFE88_RS01495 b602ba38a3231c21bca81650c63b64d3 77 Pfam PF13291 ACT domain 4 75 1.2E-8 T 29-03-2018 IPR002912 ACT domain CFE88_RS01495 b602ba38a3231c21bca81650c63b64d3 77 SUPERFAMILY SSF55021 3 74 1.83E-12 T 29-03-2018 CFE88_RS01495 b602ba38a3231c21bca81650c63b64d3 77 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 74 6.0E-36 T 29-03-2018 CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 4.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 4.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 4.5E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 Gene3D G3DSA:3.40.50.1820 2 263 7.4E-35 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 SUPERFAMILY SSF53474 6 258 1.34E-43 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08150 b49f1e9a38f467962ff29f86cf84e20a 263 Pfam PF00561 alpha/beta hydrolase fold 22 231 9.5E-20 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 703 768 0.015 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 958 1015 3.9 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 1025 1091 0.082 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 615 678 1.0 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 868 938 9.8E-5 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF13457 SH3-like domain 543 603 7.2E-4 T 29-03-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 1184 1318 1.5E-13 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:1.10.530.10 1167 1324 6.4E-25 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 869 940 1.6E-9 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 535 605 1.3E-7 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 700 769 1.4E-5 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 947 1015 4.8E-9 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 777 847 3.0E-14 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 613 683 5.1E-15 T 29-03-2018 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 SMART SM00047 1171 1330 1.8E-61 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 SMART SM00644 342 483 1.3E-38 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:3.40.80.10 335 513 2.9E-24 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 SUPERFAMILY SSF55846 342 493 6.23E-33 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS06090 14d010f62064fd0a313a0ea228ade573 1335 Gene3D G3DSA:2.30.30.170 1021 1092 7.9E-11 T 29-03-2018 CFE88_RS07960 9561e0a884977ea37fc709732ab13661 307 Gene3D G3DSA:3.40.50.720 1 191 1.6E-8 T 29-03-2018 CFE88_RS07960 9561e0a884977ea37fc709732ab13661 307 SUPERFAMILY SSF51735 1 117 3.15E-12 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS08305 4f49bc067142784771f3a65e7925b440 329 Gene3D G3DSA:3.40.50.10750 142 300 3.7E-62 T 29-03-2018 CFE88_RS08305 4f49bc067142784771f3a65e7925b440 329 PIRSF PIRSF000428 1 329 9.3E-112 T 29-03-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CFE88_RS08305 4f49bc067142784771f3a65e7925b440 329 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 19 324 3.9E-117 T 29-03-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CFE88_RS08305 4f49bc067142784771f3a65e7925b440 329 SUPERFAMILY SSF53659 7 327 9.05E-88 T 29-03-2018 CFE88_RS08305 4f49bc067142784771f3a65e7925b440 329 Pfam PF01515 Phosphate acetyl/butaryl transferase 8 324 2.1E-118 T 29-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CFE88_RS03035 dbd291f124b57e5397ac6a0fc5bfcc98 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.7E-39 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03035 dbd291f124b57e5397ac6a0fc5bfcc98 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 26.583 T 29-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03035 dbd291f124b57e5397ac6a0fc5bfcc98 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 3.3E-41 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03035 dbd291f124b57e5397ac6a0fc5bfcc98 102 SUPERFAMILY SSF141091 1 101 1.57E-38 T 29-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 Gene3D G3DSA:3.10.580.10 61 206 4.6E-23 T 29-03-2018 CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 SUPERFAMILY SSF54631 73 201 8.34E-21 T 29-03-2018 CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 PIRSF PIRSF026546 1 207 1.7E-101 T 29-03-2018 IPR016842 Protein of unknown function UCP026546, HtH-CBS CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 SUPERFAMILY SSF46785 2 70 4.72E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 SMART SM00116 83 131 1.7 T 29-03-2018 IPR000644 CBS domain CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 SMART SM00116 150 202 4.8 T 29-03-2018 IPR000644 CBS domain CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 Gene3D G3DSA:1.10.10.10 1 60 4.4E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 Pfam PF08279 HTH domain 6 58 4.2E-13 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 Pfam PF00571 CBS domain 147 200 0.0012 T 29-03-2018 IPR000644 CBS domain CFE88_RS03430 cec2c6570d26f638473dc05b677ae2e8 207 Pfam PF00571 CBS domain 77 130 1.0E-7 T 29-03-2018 IPR000644 CBS domain CFE88_RS00320 68418b989e26b299931180e91a27999b 271 Pfam PF00459 Inositol monophosphatase family 32 241 2.3E-34 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 205 229 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 174 195 9.7E-24 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 Gene3D G3DSA:3.30.540.10 1 145 1.1E-31 T 29-03-2018 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 SUPERFAMILY SSF56655 8 257 3.93E-57 T 29-03-2018 CFE88_RS00320 68418b989e26b299931180e91a27999b 271 Gene3D G3DSA:3.40.190.80 147 265 4.3E-21 T 29-03-2018 CFE88_RS06915 e9e7e5672256393be402517cef3b83cf 282 SUPERFAMILY SSF117396 1 269 8.5E-81 T 29-03-2018 IPR002763 Protein of unknown function DUF72 CFE88_RS06915 e9e7e5672256393be402517cef3b83cf 282 Gene3D G3DSA:3.20.20.410 1 282 9.8E-77 T 29-03-2018 IPR002763 Protein of unknown function DUF72 CFE88_RS06915 e9e7e5672256393be402517cef3b83cf 282 Pfam PF01904 Protein of unknown function DUF72 21 263 2.3E-58 T 29-03-2018 IPR002763 Protein of unknown function DUF72 CFE88_RS08820 4f06183548882e314805954497499398 432 Pfam PF11734 TilS substrate C-terminal domain 358 420 2.9E-10 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CFE88_RS08820 4f06183548882e314805954497499398 432 Pfam PF01171 PP-loop family 13 195 9.7E-56 T 29-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CFE88_RS08820 4f06183548882e314805954497499398 432 SUPERFAMILY SSF52402 8 203 2.2E-49 T 29-03-2018 CFE88_RS08820 4f06183548882e314805954497499398 432 SMART SM00977 358 421 4.0E-17 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CFE88_RS08820 4f06183548882e314805954497499398 432 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 13 199 2.1E-54 T 29-03-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CFE88_RS08820 4f06183548882e314805954497499398 432 SUPERFAMILY SSF56037 333 420 2.28E-15 T 29-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CFE88_RS08820 4f06183548882e314805954497499398 432 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 308 21.254 T 29-03-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CFE88_RS08820 4f06183548882e314805954497499398 432 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 358 403 7.7E-19 T 29-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CFE88_RS08820 4f06183548882e314805954497499398 432 Gene3D G3DSA:3.40.50.620 9 247 5.4E-42 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06070 109991f11c23ffd131e275501cb4658f 400 SUPERFAMILY SSF56601 69 386 5.07E-67 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS06070 109991f11c23ffd131e275501cb4658f 400 Pfam PF00144 Beta-lactamase 87 368 2.0E-49 T 29-03-2018 IPR001466 Beta-lactamase-related CFE88_RS06070 109991f11c23ffd131e275501cb4658f 400 Gene3D G3DSA:3.40.710.10 71 388 9.9E-55 T 29-03-2018 CFE88_RS01025 fe1844a28542a554950f6e2f9a21d6bd 302 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 60 265 9.3E-28 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CFE88_RS01025 fe1844a28542a554950f6e2f9a21d6bd 302 Gene3D G3DSA:3.60.21.10 57 297 7.3E-35 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS01025 fe1844a28542a554950f6e2f9a21d6bd 302 PIRSF PIRSF000883 60 299 3.3E-42 T 29-03-2018 IPR011152 Phosphoesterase MJ0912 CFE88_RS01025 fe1844a28542a554950f6e2f9a21d6bd 302 SUPERFAMILY SSF56300 60 294 2.88E-49 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 SUPERFAMILY SSF51569 3 323 2.93E-138 T 29-03-2018 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 SMART SM01004 1 322 7.1E-225 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 4 320 1.4E-145 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PIRSF PIRSF001415 1 324 1.3E-150 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 119 133 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 296 315 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 266 281 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 241 257 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 1.2E-57 T 29-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 241 253 - T 29-03-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CFE88_RS02970 af63c57da27c0ce87fcf8e8ff860f767 324 Gene3D G3DSA:3.20.20.70 1 324 3.2E-148 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 SUPERFAMILY SSF51905 5 297 2.04E-84 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 SUPERFAMILY SSF51905 480 542 2.04E-84 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 263 277 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 86 109 - T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 Pfam PF05199 GMC oxidoreductase 396 534 7.3E-36 T 29-03-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 Pfam PF00732 GMC oxidoreductase 8 304 5.6E-78 T 29-03-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 Gene3D G3DSA:3.30.560.10 108 496 2.4E-100 T 29-03-2018 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 TIGRFAM TIGR01810 betA: choline dehydrogenase 9 544 5.3E-277 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 SUPERFAMILY SSF54373 299 481 8.14E-56 T 29-03-2018 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 6 561 60.172 T 29-03-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 Gene3D G3DSA:4.10.450.10 43 107 3.1E-22 T 29-03-2018 CFE88_RS11285 aa086aa1150e355097fed487149dee70 572 PIRSF PIRSF000137 1 545 4.3E-138 T 29-03-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 123 1.1E-50 T 29-03-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Hamap MF_01953 Urease subunit alpha [ureC]. 3 571 55.697 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 SUPERFAMILY SSF51556 485 571 2.16E-189 T 29-03-2018 IPR032466 Metal-dependent hydrolase CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 SUPERFAMILY SSF51556 133 436 2.16E-189 T 29-03-2018 IPR032466 Metal-dependent hydrolase CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 SUPERFAMILY SSF51338 413 483 9.55E-56 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 SUPERFAMILY SSF51338 4 111 9.55E-56 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 405 420 8.0E-33 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 338 354 8.0E-33 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 431 444 8.0E-33 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 299 316 8.0E-33 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 ProSitePatterns PS00145 Urease active site. 321 337 - T 29-03-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 571 0.0 T 29-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Gene3D G3DSA:3.20.20.140 426 557 2.5E-42 T 29-03-2018 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Gene3D G3DSA:3.20.20.140 148 425 7.7E-150 T 29-03-2018 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 ProSitePatterns PS01120 Urease nickel ligands signature. 131 144 - T 29-03-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Gene3D G3DSA:2.30.40.10 69 147 3.1E-15 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS00435 3f9e9ebe00e9262a53ac554840504132 571 Pfam PF01979 Amidohydrolase family 129 458 1.4E-77 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 SUPERFAMILY SSF161098 281 470 1.57E-45 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 280 376 2.2E-28 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 SMART SM00062 42 263 7.6E-49 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 262 1.3E-52 T 29-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 299 482 7.4E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 Gene3D G3DSA:3.40.190.10 32 145 7.5E-34 T 29-03-2018 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 SUPERFAMILY SSF53850 13 261 2.0E-59 T 29-03-2018 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 Gene3D G3DSA:1.10.3720.10 275 482 4.1E-44 T 29-03-2018 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 Gene3D G3DSA:3.40.190.10 146 226 2.2E-15 T 29-03-2018 CFE88_RS02190 7b9e07b54bcf52f8f04f03016dc0773f 485 SMART SM00079 42 266 0.0031 T 29-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 4 234 34.147 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 PIRSF PIRSF000370 2 237 2.4E-50 T 29-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 3 237 6.2E-114 T 29-03-2018 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 Pfam PF13353 4Fe-4S single cluster domain 15 119 6.6E-10 T 29-03-2018 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 Pfam PF04055 Radical SAM superfamily 28 123 5.7E-12 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 SUPERFAMILY SSF102114 23 122 7.06E-14 T 29-03-2018 CFE88_RS07655 c49906a2e64604a875c5ee6f7aa705c0 237 Gene3D G3DSA:3.80.30.20 21 221 2.9E-16 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS00365 5f0fd2df039618bd9877a4454e06489f 134 Pfam PF00893 Small Multidrug Resistance protein 27 115 1.6E-17 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CFE88_RS00365 5f0fd2df039618bd9877a4454e06489f 134 SUPERFAMILY SSF103481 32 126 4.32E-13 T 29-03-2018 CFE88_RS12475 06e43f169c491ddae07f16ef47bc51f3 179 Gene3D G3DSA:3.30.1330.70 8 146 6.9E-16 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS12475 06e43f169c491ddae07f16ef47bc51f3 179 SUPERFAMILY SSF103084 10 139 2.22E-9 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS12475 06e43f169c491ddae07f16ef47bc51f3 179 Pfam PF05866 Endodeoxyribonuclease RusA 18 138 1.2E-13 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS12520 06e43f169c491ddae07f16ef47bc51f3 179 Gene3D G3DSA:3.30.1330.70 8 146 6.9E-16 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS12520 06e43f169c491ddae07f16ef47bc51f3 179 SUPERFAMILY SSF103084 10 139 2.22E-9 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS12520 06e43f169c491ddae07f16ef47bc51f3 179 Pfam PF05866 Endodeoxyribonuclease RusA 18 138 1.2E-13 T 29-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 CFE88_RS10960 b8e65069567a4bf46a5c64f1a6fc39e1 226 Pfam PF16887 Domain of unknown function (DUF5081) 7 215 1.8E-62 T 29-03-2018 IPR031682 Protein of unknown function DUF5081 CFE88_RS10590 1ef795ff49d3ef8c1019a6aec042e925 325 SUPERFAMILY SSF63829 11 321 1.09E-62 T 29-03-2018 CFE88_RS10590 1ef795ff49d3ef8c1019a6aec042e925 325 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 51 271 7.4E-33 T 29-03-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region CFE88_RS10590 1ef795ff49d3ef8c1019a6aec042e925 325 Gene3D G3DSA:2.120.10.30 1 325 2.2E-51 T 29-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 363 386 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 474 497 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 418 442 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 499 522 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 390 411 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.1E-41 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82866 820 1040 2.88E-46 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Gene3D G3DSA:1.20.1640.10 821 1040 3.7E-42 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Gene3D G3DSA:1.20.1640.10 302 528 4.3E-47 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82693 42 133 1.94E-12 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Gene3D G3DSA:3.30.2090.10 734 820 4.5E-15 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Gene3D G3DSA:3.30.2090.10 180 301 3.4E-12 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82866 324 526 2.09E-42 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Gene3D G3DSA:3.30.70.1430 42 141 8.3E-18 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82693 135 181 2.09E-14 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82693 302 343 2.09E-14 T 29-03-2018 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82714 735 819 3.01E-9 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Pfam PF00873 AcrB/AcrD/AcrF family 288 1037 3.2E-164 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 Pfam PF00873 AcrB/AcrD/AcrF family 6 248 2.3E-38 T 29-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 CFE88_RS00565 c138a2822caeb6188b2fc2bdb2bb8aa4 1051 SUPERFAMILY SSF82714 184 247 3.53E-5 T 29-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CFE88_RS03470 c817ac3354a7e1c2411926185333661e 263 Pfam PF00005 ABC transporter 24 173 2.2E-35 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS03470 c817ac3354a7e1c2411926185333661e 263 Gene3D G3DSA:3.40.50.300 1 247 9.0E-63 T 29-03-2018 CFE88_RS03470 c817ac3354a7e1c2411926185333661e 263 SMART SM00382 33 227 1.8E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS03470 c817ac3354a7e1c2411926185333661e 263 SUPERFAMILY SSF52540 4 230 2.31E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03470 c817ac3354a7e1c2411926185333661e 263 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS02785 2bdc76c71741e31790541d3e1e144b3e 229 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 229 38.182 T 29-03-2018 IPR022877 Protein of unknown funcion UPF0173 CFE88_RS02785 2bdc76c71741e31790541d3e1e144b3e 229 Gene3D G3DSA:3.60.15.10 1 229 5.7E-35 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS02785 2bdc76c71741e31790541d3e1e144b3e 229 SUPERFAMILY SSF56281 1 229 1.19E-37 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS02785 2bdc76c71741e31790541d3e1e144b3e 229 Pfam PF13483 Beta-lactamase superfamily domain 2 195 1.1E-22 T 29-03-2018 CFE88_RS02785 2bdc76c71741e31790541d3e1e144b3e 229 SMART SM00849 7 195 4.8E-15 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS10435 0ca857bb5343a58390c21a652d393624 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 117 1.7E-16 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS10435 0ca857bb5343a58390c21a652d393624 142 Hamap MF_01512 Metallothiol transferase FosB [fosB]. 2 139 41.862 T 29-03-2018 IPR022858 Metallothiol transferase FosB GO:0016765|GO:0046677 CFE88_RS10435 0ca857bb5343a58390c21a652d393624 142 SUPERFAMILY SSF54593 3 130 2.55E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS10435 0ca857bb5343a58390c21a652d393624 142 Gene3D G3DSA:3.10.180.10 2 136 5.2E-27 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 12 148 4.9E-57 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 Gene3D G3DSA:3.40.50.960 1 66 6.4E-24 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 Gene3D G3DSA:3.40.50.960 67 153 2.3E-39 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 7 152 30.66 T 29-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 149 1.6E-58 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02520 c55538bea5400c0a91d504e0eb025e9f 153 SUPERFAMILY SSF52121 3 152 1.11E-61 T 29-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 SUPERFAMILY SSF50494 68 280 1.92E-46 T 29-03-2018 IPR009003 Peptidase S1, PA clan CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR00839 V8 serine protease family signature 241 253 2.9E-31 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR00839 V8 serine protease family signature 224 240 2.9E-31 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR00839 V8 serine protease family signature 74 91 2.9E-31 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR00839 V8 serine protease family signature 102 119 2.9E-31 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR00839 V8 serine protease family signature 191 204 2.9E-31 T 29-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 Pfam PF13365 Trypsin-like peptidase domain 102 249 2.8E-21 T 29-03-2018 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 Gene3D G3DSA:2.40.10.10 201 279 2.3E-23 T 29-03-2018 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 Gene3D G3DSA:2.40.10.10 10 200 6.2E-12 T 29-03-2018 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR01774 Exfoliative toxin signature 226 250 1.5E-11 T 29-03-2018 IPR008353 Peptidase S1B, exfoliative toxin GO:0004252|GO:0006508 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 PRINTS PR01774 Exfoliative toxin signature 109 133 1.5E-11 T 29-03-2018 IPR008353 Peptidase S1B, exfoliative toxin GO:0004252|GO:0006508 CFE88_RS02180 42b9b8bb32b09284cdaa4c3062191a0f 282 ProSitePatterns PS00673 Serine proteases, V8 family, serine active site. 230 240 - T 29-03-2018 IPR000126 Serine proteases, V8 family, serine active site GO:0006508|GO:0008236 CFE88_RS02695 b426650bd5d3d4ea33d37c0778fbaa17 374 SUPERFAMILY SSF56784 1 373 7.09E-48 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS02695 b426650bd5d3d4ea33d37c0778fbaa17 374 Gene3D G3DSA:3.40.50.1000 1 374 1.9E-25 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS02695 b426650bd5d3d4ea33d37c0778fbaa17 374 Pfam PF13242 HAD-hyrolase-like 282 368 1.5E-14 T 29-03-2018 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 Gene3D G3DSA:3.40.718.10 1 422 1.2E-136 T 29-03-2018 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 SMART SM01329 20 417 3.1E-185 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 SUPERFAMILY SSF53659 5 421 1.39E-140 T 29-03-2018 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 21 416 1.4E-122 T 29-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 306 325 - T 29-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CFE88_RS02845 feb304535009df6c97d24a93a5edf6ed 422 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 421 1.9E-212 T 29-03-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CFE88_RS08235 22baf801a6b6cb3a230bef078cb6a762 432 Gene3D G3DSA:1.10.3210.10 13 315 4.9E-77 T 29-03-2018 CFE88_RS08235 22baf801a6b6cb3a230bef078cb6a762 432 Pfam PF01966 HD domain 64 184 2.0E-15 T 29-03-2018 IPR006674 HD domain CFE88_RS08235 22baf801a6b6cb3a230bef078cb6a762 432 SMART SM00471 60 190 8.1E-11 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS08235 22baf801a6b6cb3a230bef078cb6a762 432 SUPERFAMILY SSF109604 7 417 3.7E-109 T 29-03-2018 CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 Pfam PF01895 PhoU domain 121 202 1.9E-16 T 29-03-2018 IPR026022 PhoU domain CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 Pfam PF01895 PhoU domain 19 105 1.9E-16 T 29-03-2018 IPR026022 PhoU domain CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 6 211 1.1E-67 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 SUPERFAMILY SSF109755 5 212 1.05E-52 T 29-03-2018 CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 Gene3D G3DSA:1.20.58.220 115 214 3.6E-20 T 29-03-2018 CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 PIRSF PIRSF003107 1 214 1.7E-62 T 29-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CFE88_RS04305 c8f39638687d2eb8d047102901a2529f 215 Gene3D G3DSA:1.20.58.220 1 114 5.0E-20 T 29-03-2018 CFE88_RS03505 791192742476ad2d13d5244c27f85f14 183 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 174 2.4E-37 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CFE88_RS03505 791192742476ad2d13d5244c27f85f14 183 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 175 2.3E-49 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CFE88_RS03505 791192742476ad2d13d5244c27f85f14 183 PIRSF PIRSF006806 1 179 2.8E-42 T 29-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CFE88_RS03505 791192742476ad2d13d5244c27f85f14 183 Gene3D G3DSA:3.40.50.10420 1 182 3.4E-43 T 29-03-2018 CFE88_RS03505 791192742476ad2d13d5244c27f85f14 183 SUPERFAMILY SSF100950 1 176 1.95E-43 T 29-03-2018 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 TIGRFAM TIGR01529 argR_whole: arginine repressor 7 150 6.4E-51 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 SUPERFAMILY SSF55252 80 150 9.81E-23 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 Pfam PF02863 Arginine repressor, C-terminal domain 82 146 3.2E-26 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 Hamap MF_00173 Arginine repressor [argR]. 1 150 68.518 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 Gene3D G3DSA:1.10.10.10 4 67 1.3E-25 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 Pfam PF01316 Arginine repressor, DNA binding domain 3 70 5.0E-27 T 29-03-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 SUPERFAMILY SSF46785 4 78 2.93E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 Gene3D G3DSA:3.30.1360.40 75 146 4.3E-28 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 PRINTS PR01467 Bacterial arginine repressor signature 38 53 1.5E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 PRINTS PR01467 Bacterial arginine repressor signature 89 102 1.5E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 PRINTS PR01467 Bacterial arginine repressor signature 119 134 1.5E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 PRINTS PR01467 Bacterial arginine repressor signature 22 35 1.5E-24 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS03680 fc6834a0f1c85840213d66e9fc59cf13 150 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 88 150 2.0E-18 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 5 259 1.3E-89 T 29-03-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 Pfam PF00809 Pterin binding enzyme 7 246 3.7E-81 T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 40 53 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 SUPERFAMILY SSF51717 4 262 3.53E-84 T 29-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 6 21 - T 29-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CFE88_RS08795 b53f5c83516e4ebbaeb94da225b197d4 272 Gene3D G3DSA:3.20.20.20 2 272 9.5E-91 T 29-03-2018 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 PIRSF PIRSF001491 4 392 2.6E-161 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 SUPERFAMILY SSF53649 5 101 2.49E-71 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 SUPERFAMILY SSF53649 218 389 2.49E-71 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 Gene3D G3DSA:3.40.720.10 209 395 5.3E-16 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 TIGRFAM TIGR01696 deoB: phosphopentomutase 7 386 2.7E-208 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 Pfam PF01676 Metalloenzyme superfamily 6 379 1.1E-38 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 Hamap MF_00740 Phosphopentomutase [deoB]. 5 388 52.117 T 29-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 Gene3D G3DSA:3.30.70.1250 100 208 3.2E-54 T 29-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CFE88_RS01095 aa8f62787bdf3ce5cf21bb10ece5d921 396 SUPERFAMILY SSF143856 101 217 8.11E-50 T 29-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CFE88_RS06125 733903ce0fbf0bbdebebf6b49dc0e71f 267 SUPERFAMILY SSF53474 2 262 1.17E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06125 733903ce0fbf0bbdebebf6b49dc0e71f 267 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 4 262 34.188 T 29-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 CFE88_RS06125 733903ce0fbf0bbdebebf6b49dc0e71f 267 Pfam PF12697 Alpha/beta hydrolase family 17 252 1.2E-16 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS06125 733903ce0fbf0bbdebebf6b49dc0e71f 267 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 14 262 1.5E-85 T 29-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 CFE88_RS06125 733903ce0fbf0bbdebebf6b49dc0e71f 267 Gene3D G3DSA:3.40.50.1820 1 267 5.8E-49 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Gene3D G3DSA:1.20.58.410 579 644 1.8E-7 T 29-03-2018 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Gene3D G3DSA:3.40.50.300 330 578 1.3E-50 T 29-03-2018 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 SUPERFAMILY SSF52540 320 534 8.15E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Gene3D G3DSA:3.40.50.300 2 276 9.6E-58 T 29-03-2018 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 SMART SM00382 28 242 3.5E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 SMART SM00382 354 521 2.9E-15 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Pfam PF00005 ABC transporter 20 195 7.6E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Pfam PF00005 ABC transporter 347 475 3.0E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Pfam PF16326 ABC transporter C-terminal domain 576 642 8.4E-12 T 29-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 SUPERFAMILY SSF52540 136 276 2.98E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 SUPERFAMILY SSF52540 3 94 2.98E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 ProSitePatterns PS00211 ABC transporters family signature. 447 461 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS01535 6f39526cf4068bb89465e3c5a221bf28 644 Pfam PF12848 ABC transporter 237 320 2.3E-22 T 29-03-2018 IPR032781 ABC-transporter extension domain CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 Pfam PF01174 SNO glutamine amidotransferase family 5 183 9.4E-71 T 29-03-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 3 181 35.749 T 29-03-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 ProSitePatterns PS01236 PdxT/SNO family family signature. 40 50 - T 29-03-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 SUPERFAMILY SSF52317 2 183 2.52E-48 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 2 180 2.3E-86 T 29-03-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 Gene3D G3DSA:3.40.50.880 1 184 6.2E-35 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS08685 fb03001c593dc74c9b6da106ecad1c2e 185 PIRSF PIRSF005639 1 185 1.4E-67 T 29-03-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 Pfam PF09186 Domain of unknown function (DUF1949) 140 195 1.9E-12 T 29-03-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 Gene3D G3DSA:3.30.70.240 137 198 6.7E-12 T 29-03-2018 CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 3 201 4.2E-59 T 29-03-2018 IPR015796 Impact family, bacterial/archaeal CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 Gene3D G3DSA:3.30.230.30 4 133 7.8E-46 T 29-03-2018 IPR001498 Impact, N-terminal CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 Pfam PF01205 Uncharacterized protein family UPF0029 20 124 4.0E-34 T 29-03-2018 IPR001498 Impact, N-terminal CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 SUPERFAMILY SSF54211 4 131 7.21E-44 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 SUPERFAMILY SSF54980 137 199 3.02E-8 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS07445 79e17df48b5c87d8db65ba088fa7c96f 213 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 79 108 - T 29-03-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 Pfam PF00106 short chain dehydrogenase 3 196 8.0E-57 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 7.0E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 7.0E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 7.0E-13 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 SUPERFAMILY SSF51735 3 255 4.0E-76 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 TIGRFAM TIGR02415 23BDH: acetoin reductases 3 257 2.9E-126 T 29-03-2018 IPR014007 Acetoin reductase GO:0019152|GO:0045150|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00650+1.1.1.304+1.1.1.30|MetaCyc: PWY-6389 CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 Gene3D G3DSA:3.40.50.720 1 42 6.4E-8 T 29-03-2018 CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 Gene3D G3DSA:3.40.50.720 43 257 2.7E-56 T 29-03-2018 CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10270 4db3bfb7c3664bf20ea740f86e397417 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 6.8E-41 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 SMART SM00981 75 165 9.7E-22 T 29-03-2018 IPR004114 THUMP domain GO:0003723 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 SUPERFAMILY SSF52402 174 389 3.75E-51 T 29-03-2018 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Gene3D G3DSA:3.30.2300.10 82 163 1.7E-20 T 29-03-2018 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Gene3D G3DSA:3.40.50.620 175 403 1.5E-32 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 371 5.5E-63 T 29-03-2018 IPR020536 Thil, AANH domain GO:0004810 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 6 373 4.5E-120 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 407 155.592 T 29-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 SUPERFAMILY SSF143437 3 173 7.5E-49 T 29-03-2018 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Gene3D G3DSA:3.30.70.1510 5 81 4.3E-23 T 29-03-2018 CFE88_RS02745 8e67389f73fd90971566f8239052d1bc 407 Pfam PF02926 THUMP domain 46 162 4.2E-19 T 29-03-2018 IPR004114 THUMP domain GO:0003723 CFE88_RS01995 e32c2380fd8ce4c93d9f607f54bba12c 180 Pfam PF04167 Protein of unknown function (DUF402) 63 127 8.1E-18 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS01995 e32c2380fd8ce4c93d9f607f54bba12c 180 PIRSF PIRSF028345 4 180 4.6E-79 T 29-03-2018 IPR016882 Uncharacterised protein family UPF0374 CFE88_RS01995 e32c2380fd8ce4c93d9f607f54bba12c 180 Hamap MF_01568 UPF0374 protein . 4 178 51.017 T 29-03-2018 IPR016882 Uncharacterised protein family UPF0374 CFE88_RS01995 e32c2380fd8ce4c93d9f607f54bba12c 180 Gene3D G3DSA:2.40.380.10 18 174 5.2E-33 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS01995 e32c2380fd8ce4c93d9f607f54bba12c 180 SUPERFAMILY SSF159234 7 173 1.57E-32 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 Gene3D G3DSA:3.40.47.10 270 389 2.7E-30 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 SUPERFAMILY SSF53901 271 389 5.19E-38 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 389 5.6E-149 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 SUPERFAMILY SSF53901 4 270 1.15E-90 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 29-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 Pfam PF00108 Thiolase, N-terminal domain 4 263 1.7E-106 T 29-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 29-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 Gene3D G3DSA:3.40.47.10 1 269 1.0E-64 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 PIRSF PIRSF000429 1 393 8.1E-135 T 29-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 Pfam PF02803 Thiolase, C-terminal domain 271 390 2.2E-43 T 29-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 CFE88_RS09535 530507e3be9cba3e4cb4796d1ae93903 394 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 29-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 Gene3D G3DSA:2.170.120.20 98 186 1.2E-25 T 29-03-2018 IPR020057 Ribosomal protein L25, beta domain CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 12 179 2.5E-49 T 29-03-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 13 94 3.0E-40 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 Gene3D G3DSA:2.40.240.10 11 94 9.5E-26 T 29-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 2 182 25.537 T 29-03-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 Pfam PF01386 Ribosomal L25p family 8 91 5.1E-22 T 29-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 SUPERFAMILY SSF50715 3 188 2.27E-52 T 29-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CFE88_RS08860 24275e11f2ae0582b651bc0da0e6338b 219 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 101 181 2.3E-24 T 29-03-2018 IPR020057 Ribosomal protein L25, beta domain CFE88_RS10335 c476e2ee81db04f9d6f04d09b7a61e27 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS10335 c476e2ee81db04f9d6f04d09b7a61e27 271 Pfam PF00005 ABC transporter 21 178 2.7E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10335 c476e2ee81db04f9d6f04d09b7a61e27 271 Gene3D G3DSA:3.40.50.300 1 260 5.4E-60 T 29-03-2018 CFE88_RS10335 c476e2ee81db04f9d6f04d09b7a61e27 271 SMART SM00382 30 228 2.0E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS10335 c476e2ee81db04f9d6f04d09b7a61e27 271 SUPERFAMILY SSF52540 15 255 6.48E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 Pfam PF00919 Uncharacterized protein family UPF0004 4 98 7.5E-26 T 29-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 Gene3D G3DSA:3.80.30.20 140 374 1.4E-48 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 Pfam PF04055 Radical SAM superfamily 149 318 5.4E-28 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 424 7.0E-148 T 29-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 Gene3D G3DSA:3.40.50.2300 11 132 0.0069 T 29-03-2018 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 SMART SM00729 143 360 1.8E-55 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 419 6.9E-143 T 29-03-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 SUPERFAMILY SSF102114 125 364 1.57E-55 T 29-03-2018 CFE88_RS03370 8268fb1a86c422a78754a2a521af5b11 448 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 147 167 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CFE88_RS04830 c2a27936b7df3fae5d0a8412c84f29cd 181 Pfam PF09643 YopX protein 4 131 2.4E-16 T 29-03-2018 IPR019096 YopX protein CFE88_RS04830 c2a27936b7df3fae5d0a8412c84f29cd 181 Gene3D G3DSA:2.30.30.290 57 146 6.5E-17 T 29-03-2018 IPR023385 YopX-like domain, beta barrel type CFE88_RS04830 c2a27936b7df3fae5d0a8412c84f29cd 181 SUPERFAMILY SSF159006 1 130 5.1E-22 T 29-03-2018 CFE88_RS04830 c2a27936b7df3fae5d0a8412c84f29cd 181 Gene3D G3DSA:2.60.430.10 1 56 1.0E-27 T 29-03-2018 IPR024059 YopX-like domain, N-terminal CFE88_RS10325 b2de855a0938480be08b648398e15cec 311 SUPERFAMILY SSF161098 93 292 3.82E-14 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10325 b2de855a0938480be08b648398e15cec 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 307 1.0E-39 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10325 b2de855a0938480be08b648398e15cec 311 Gene3D G3DSA:1.10.3720.10 2 296 4.4E-38 T 29-03-2018 CFE88_RS00155 c29d08d09c00ab482df683772e0e93eb 106 SUPERFAMILY SSF46785 3 102 5.46E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00155 c29d08d09c00ab482df683772e0e93eb 106 Pfam PF03551 Transcriptional regulator PadR-like family 14 83 3.6E-19 T 29-03-2018 IPR005149 Transcription regulator PadR, N-terminal CFE88_RS00155 c29d08d09c00ab482df683772e0e93eb 106 Gene3D G3DSA:1.10.10.10 1 106 5.3E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05350 69ebd1a14d8cda8eadacb0426e2f5fb6 247 SMART SM00331 8 242 3.9E-31 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS05350 69ebd1a14d8cda8eadacb0426e2f5fb6 247 SUPERFAMILY SSF81606 2 243 1.29E-59 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS05350 69ebd1a14d8cda8eadacb0426e2f5fb6 247 SMART SM00332 2 240 1.7E-21 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS05350 69ebd1a14d8cda8eadacb0426e2f5fb6 247 Gene3D G3DSA:3.60.40.10 1 247 8.6E-39 T 29-03-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CFE88_RS05350 69ebd1a14d8cda8eadacb0426e2f5fb6 247 Pfam PF13672 Protein phosphatase 2C 14 204 3.7E-15 T 29-03-2018 CFE88_RS02715 18596f9e182e7bb0f4eba96578a397d2 248 SUPERFAMILY SSF51695 9 246 1.05E-72 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS02715 18596f9e182e7bb0f4eba96578a397d2 248 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 15 243 2.8E-45 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CFE88_RS02715 18596f9e182e7bb0f4eba96578a397d2 248 Gene3D G3DSA:3.20.20.190 2 248 5.1E-71 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 SUPERFAMILY SSF46946 2 112 2.94E-44 T 29-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-52 T 29-03-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 29-03-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 PIRSF PIRSF002134 1 121 1.5E-42 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 Gene3D G3DSA:1.10.8.50 1 66 9.6E-26 T 29-03-2018 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 Gene3D G3DSA:4.10.910.10 67 85 4.5E-17 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 Gene3D G3DSA:4.10.910.10 86 121 3.0E-26 T 29-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 28.31 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00735 8f0f9a53440f652b70da00ad82c83512 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 9.0E-33 T 29-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS07430 c442abc822259f5115fc9508b727743e 224 Gene3D G3DSA:3.40.50.2020 80 224 2.1E-17 T 29-03-2018 CFE88_RS07430 c442abc822259f5115fc9508b727743e 224 SUPERFAMILY SSF53271 76 223 9.37E-18 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 3 303 9.5E-108 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 2 303 36.603 T 29-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 Gene3D G3DSA:3.10.25.10 206 309 3.0E-31 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 Pfam PF02911 Formyl transferase, C-terminal domain 204 300 6.6E-31 T 29-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 SUPERFAMILY SSF50486 204 301 2.83E-31 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 132 155 - T 29-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 Gene3D G3DSA:3.40.50.170 2 205 4.9E-66 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 Pfam PF00551 Formyl transferase 3 178 7.4E-41 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05365 1d1e75116af9e536fddbdd3aa34f8551 310 SUPERFAMILY SSF53328 3 205 3.66E-64 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 SUPERFAMILY SSF51230 2 87 7.33E-26 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 199 422 1.5E-76 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Gene3D G3DSA:3.30.559.10 184 426 4.8E-81 T 29-03-2018 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Gene3D G3DSA:2.40.50.100 1 61 1.4E-16 T 29-03-2018 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Pfam PF00364 Biotin-requiring enzyme 2 74 8.5E-23 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Gene3D G3DSA:4.10.320.10 110 174 9.1E-15 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Pfam PF02817 e3 binding domain 121 154 1.5E-10 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 Gene3D G3DSA:3.90.1170.30 62 97 0.2 T 29-03-2018 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 SUPERFAMILY SSF47005 114 159 1.28E-11 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 SUPERFAMILY SSF52777 199 422 1.51E-77 T 29-03-2018 CFE88_RS03705 aeaa1c59cc532d495bb22d28d9b0921f 430 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 25 413 6.8E-147 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 Gene3D G3DSA:3.40.50.1980 18 212 1.5E-78 T 29-03-2018 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 Pfam PF00815 Histidinol dehydrogenase 18 413 4.5E-145 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 SUPERFAMILY SSF53720 19 413 4.12E-69 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 25 49 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 238 257 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 157 183 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 187 212 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 307 332 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 348 366 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 123 149 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PRINTS PR00083 Histidinol dehydrogenase signature 216 237 3.5E-71 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 1 414 37.598 T 29-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 Gene3D G3DSA:3.40.50.1980 213 358 2.8E-54 T 29-03-2018 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 PIRSF PIRSF000099 2 416 4.1E-163 T 29-03-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS10640 3c23bdf9d3a9fade8421e1beeac31081 416 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 216 248 - T 29-03-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 CFE88_RS06845 9fcbbfe56b726b7d7a3237056a8524af 412 TIGRFAM TIGR04092 LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD 6 378 2.7E-107 T 29-03-2018 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes CFE88_RS06845 9fcbbfe56b726b7d7a3237056a8524af 412 PIRSF PIRSF021438 1 381 1.6E-93 T 29-03-2018 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes CFE88_RS06845 9fcbbfe56b726b7d7a3237056a8524af 412 SUPERFAMILY SSF52266 287 381 1.94E-5 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain CFE88_RS06845 9fcbbfe56b726b7d7a3237056a8524af 412 Gene3D G3DSA:3.40.50.1110 83 394 1.7E-4 T 29-03-2018 CFE88_RS06845 9fcbbfe56b726b7d7a3237056a8524af 412 Pfam PF04914 DltD protein 42 378 5.4E-98 T 29-03-2018 IPR006998 DltD CFE88_RS03015 67ecdefddd723f00d01a7a2a5ea238fa 161 Pfam PF16284 Domain of unknown function (DUF4930) 25 160 5.6E-65 T 29-03-2018 IPR032561 Protein of unknown function DUF4930 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 SUPERFAMILY SSF56235 46 531 3.34E-102 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 439 456 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 151 170 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 270 289 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 362 380 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 416 431 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 241 257 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 133 151 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 76 101 8.6E-42 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS11635 12abbf521cd393f10fa8ed7263fc33ef 534 Pfam PF01019 Gamma-glutamyltranspeptidase 69 530 9.8E-82 T 29-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 CFE88_RS08615 5a02e164d1f1ad5a812e31da2e4cf87f 175 Pfam PF05991 YacP-like NYN domain 6 169 4.9E-49 T 29-03-2018 IPR010298 Protein of unknown function DUF901 CFE88_RS11980 07ea1fa194d1d9b7a0f6744a04b58c7a 194 PIRSF PIRSF021308 1 194 4.8E-88 T 29-03-2018 IPR016786 Uncharacterised protein YdeI, bacterial CFE88_RS11980 07ea1fa194d1d9b7a0f6744a04b58c7a 194 SUPERFAMILY SSF159888 8 125 4.71E-18 T 29-03-2018 CFE88_RS11980 07ea1fa194d1d9b7a0f6744a04b58c7a 194 Pfam PF08818 Domain of unknown function (DU1801) 19 116 1.4E-12 T 29-03-2018 IPR014922 Domain of unknown function DUF1801 CFE88_RS11980 07ea1fa194d1d9b7a0f6744a04b58c7a 194 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 134 192 4.3E-17 T 29-03-2018 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.9E-19 T 29-03-2018 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 140 155 1.9E-19 T 29-03-2018 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 300 1.9E-19 T 29-03-2018 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 1.9E-19 T 29-03-2018 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 SUPERFAMILY SSF51905 256 357 5.35E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 SUPERFAMILY SSF51905 1 161 5.35E-53 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 Pfam PF01494 FAD binding domain 2 327 1.9E-22 T 29-03-2018 IPR002938 FAD-binding domain GO:0071949 CFE88_RS00350 50024700d03648b87f93578e5a96f18e 374 Gene3D G3DSA:3.50.50.60 1 359 2.2E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 11 389 2.9E-84 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 PRINTS PR01035 Tetracycline resistance protein signature 24 40 4.3E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 PRINTS PR01035 Tetracycline resistance protein signature 356 379 4.3E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 PRINTS PR01035 Tetracycline resistance protein signature 81 105 4.3E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 PRINTS PR01035 Tetracycline resistance protein signature 108 129 4.3E-6 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 Pfam PF07690 Major Facilitator Superfamily 22 362 2.2E-43 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 Gene3D G3DSA:1.20.1250.20 204 394 8.0E-17 T 29-03-2018 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 Gene3D G3DSA:1.20.1250.20 7 201 4.6E-34 T 29-03-2018 CFE88_RS00095 fc3d06343970744a86e2411bc628e974 403 SUPERFAMILY SSF103473 12 391 2.09E-63 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS05255 13d586fa2cef9c421aebece7d3c39371 91 SUPERFAMILY SSF54565 2 85 1.44E-31 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05255 13d586fa2cef9c421aebece7d3c39371 91 Gene3D G3DSA:3.30.1320.10 2 86 1.9E-32 T 29-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05255 13d586fa2cef9c421aebece7d3c39371 91 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 7.3E-33 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05255 13d586fa2cef9c421aebece7d3c39371 91 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 78 24.072 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05255 13d586fa2cef9c421aebece7d3c39371 91 Pfam PF00886 Ribosomal protein S16 9 68 3.3E-24 T 29-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 SUPERFAMILY SSF90123 3 319 1.31E-78 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 Pfam PF00005 ABC transporter 357 506 3.1E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 SUPERFAMILY SSF52540 333 576 3.59E-96 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 Gene3D G3DSA:1.20.1560.10 1 329 4.5E-67 T 29-03-2018 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 Gene3D G3DSA:3.40.50.300 330 578 8.8E-78 T 29-03-2018 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 Pfam PF00664 ABC transporter transmembrane region 17 294 2.7E-43 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS02000 f612ddb824ee018fe6cf779a2f1e367d 578 SMART SM00382 366 552 2.4E-14 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 29-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 Gene3D G3DSA:2.20.150.10 9 42 2.9E-14 T 29-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 301 3.0E-109 T 29-03-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 PIRSF PIRSF000535 1 303 2.9E-88 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 Gene3D G3DSA:3.40.1190.20 43 304 9.6E-42 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 SUPERFAMILY SSF53613 1 300 7.79E-63 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 300 5.9E-109 T 29-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CFE88_RS07735 76575be96b47a694c39fd627648b8d00 306 Pfam PF00294 pfkB family carbohydrate kinase 11 281 1.3E-52 T 29-03-2018 IPR011611 Carbohydrate kinase PfkB CFE88_RS01865 18b538a6801e2561f78be4ee13d22322 165 Gene3D G3DSA:1.20.1260.10 1 162 3.1E-44 T 29-03-2018 IPR012347 Ferritin-related CFE88_RS01865 18b538a6801e2561f78be4ee13d22322 165 Pfam PF00210 Ferritin-like domain 8 143 3.2E-40 T 29-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CFE88_RS01865 18b538a6801e2561f78be4ee13d22322 165 SUPERFAMILY SSF47240 1 159 6.37E-56 T 29-03-2018 IPR009078 Ferritin-like superfamily CFE88_RS11145 5fbe78cd9d62970c5bb62f20c06b8f45 670 Gene3D G3DSA:1.20.1250.20 9 666 0.082 T 29-03-2018 CFE88_RS11145 5fbe78cd9d62970c5bb62f20c06b8f45 670 Pfam PF02687 FtsX-like permease family 85 174 4.0E-8 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CFE88_RS11145 5fbe78cd9d62970c5bb62f20c06b8f45 670 PIRSF PIRSF018968 1 669 6.8E-47 T 29-03-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0006810 CFE88_RS11310 96af7ce922dbd4c3fca04fc07eb2d463 272 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 271 56.065 T 29-03-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS11310 96af7ce922dbd4c3fca04fc07eb2d463 272 Gene3D G3DSA:3.40.50.300 22 272 2.6E-4 T 29-03-2018 CFE88_RS11310 96af7ce922dbd4c3fca04fc07eb2d463 272 Pfam PF03618 Kinase/pyrophosphorylase 10 265 3.8E-89 T 29-03-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CFE88_RS02760 59dea84c4b3b7f305f0df90ea5f15868 315 Pfam PF02384 N-6 DNA Methylase 96 285 7.8E-7 T 29-03-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CFE88_RS02760 59dea84c4b3b7f305f0df90ea5f15868 315 SUPERFAMILY SSF53335 23 302 8.12E-33 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02760 59dea84c4b3b7f305f0df90ea5f15868 315 PIRSF PIRSF026567 3 313 7.4E-108 T 29-03-2018 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted CFE88_RS02760 59dea84c4b3b7f305f0df90ea5f15868 315 Gene3D G3DSA:3.40.50.150 71 312 2.4E-26 T 29-03-2018 CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 Pfam PF01327 Polypeptide deformylase 4 172 4.9E-45 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 PIRSF PIRSF004749 1 183 2.8E-46 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 Hamap MF_00163 Peptide deformylase [def]. 3 183 26.995 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 PRINTS PR01576 Peptide deformylase signature 141 170 1.4E-28 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 PRINTS PR01576 Peptide deformylase signature 109 120 1.4E-28 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 PRINTS PR01576 Peptide deformylase signature 122 140 1.4E-28 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 PRINTS PR01576 Peptide deformylase signature 47 76 1.4E-28 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 Gene3D G3DSA:3.90.45.10 3 183 9.4E-53 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 SUPERFAMILY SSF56420 2 181 1.18E-57 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05885 8312cd6b5107504df6e7d50181ac5bf1 183 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 180 3.5E-44 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 Hamap MF_01854 Fructose-1,6-bisphosphatase class 3 [fbp]. 10 654 39.333 T 29-03-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 524 569 7.59E-8 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 464 492 7.59E-8 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 394 429 7.59E-8 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 199 244 7.59E-8 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 Gene3D G3DSA:3.60.21.10 25 596 5.1E-47 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 Pfam PF06874 Firmicute fructose-1,6-bisphosphatase 12 649 1.1E-283 T 29-03-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 198 254 1.52E-9 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 SUPERFAMILY SSF56300 42 67 1.52E-9 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS11755 197e78efebc51db31203db89c3477cfc 654 PIRSF PIRSF000906 6 654 0.0 T 29-03-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CFE88_RS01380 2e802a2290bc62a53e69967e292afdc9 172 Pfam PF03703 Bacterial PH domain 74 149 6.8E-21 T 29-03-2018 IPR005182 Domain of unknown function DUF304 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 SUPERFAMILY SSF46589 1 113 1.1E-30 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 3.0E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 3.0E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 3.0E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 3.0E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 3.0E-34 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 Gene3D G3DSA:3.30.930.10 106 426 5.4E-95 T 29-03-2018 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 SUPERFAMILY SSF55681 118 418 9.45E-100 T 29-03-2018 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 Gene3D G3DSA:1.10.287.40 2 105 1.1E-29 T 29-03-2018 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.4E-33 T 29-03-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 223 400 1.2E-32 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 PIRSF PIRSF001529 1 426 3.7E-198 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 43.026 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS09735 1a9d5b9cb7c1e8b92740068475ae88c3 428 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 4.8E-174 T 29-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 PIRSF PIRSF000194 1 160 2.0E-51 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 Gene3D G3DSA:3.40.430.10 1 159 1.6E-48 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 SUPERFAMILY SSF53597 1 158 6.28E-52 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 Pfam PF00186 Dihydrofolate reductase 3 157 3.9E-56 T 29-03-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 29-03-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 PRINTS PR00070 Dihydrofolate reductase signature 89 103 9.0E-12 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 PRINTS PR00070 Dihydrofolate reductase signature 14 24 9.0E-12 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 PRINTS PR00070 Dihydrofolate reductase signature 41 52 9.0E-12 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS04075 9ce3833e53bf29dab9f81b03b8ca6910 161 PRINTS PR00070 Dihydrofolate reductase signature 28 36 9.0E-12 T 29-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 PIRSF PIRSF000388 1 263 3.1E-97 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 261 1.2E-94 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 SUPERFAMILY SSF51621 3 260 1.48E-92 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 Gene3D G3DSA:3.20.20.60 1 260 1.9E-75 T 29-03-2018 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 260 38.81 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CFE88_RS11390 15e5f723cfcdfef8f1235315d3f62684 272 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 256 1.0E-99 T 29-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 Hamap MF_00165 Thymidylate kinase [tmk]. 3 202 29.56 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 193 1.9E-53 T 29-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 SUPERFAMILY SSF52540 2 201 4.29E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 Pfam PF02223 Thymidylate kinase 7 193 2.7E-48 T 29-03-2018 CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 Gene3D G3DSA:3.40.50.300 2 200 1.6E-49 T 29-03-2018 CFE88_RS08955 345056e0b945d4388bbc5168d79c5f1a 203 ProSitePatterns PS01331 Thymidylate kinase signature. 89 101 - T 29-03-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 Gene3D G3DSA:3.30.830.10 2 222 1.0E-46 T 29-03-2018 CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 Gene3D G3DSA:3.30.830.10 223 420 2.7E-16 T 29-03-2018 CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 SUPERFAMILY SSF63411 5 229 1.23E-41 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 SUPERFAMILY SSF63411 239 415 1.08E-16 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 Pfam PF00675 Insulinase (Peptidase family M16) 62 167 3.7E-15 T 29-03-2018 IPR011765 Peptidase M16, N-terminal CFE88_RS05050 f3bae4c0df125de71fa3a371e2ffa309 429 Pfam PF05193 Peptidase M16 inactive domain 182 362 2.1E-20 T 29-03-2018 IPR007863 Peptidase M16, C-terminal CFE88_RS10365 d21eb3d32f6d0d4286520c2d51ac50a7 452 Pfam PF05525 Branched-chain amino acid transport protein 8 441 3.6E-147 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CFE88_RS10365 d21eb3d32f6d0d4286520c2d51ac50a7 452 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 429 3.3E-123 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 3.7E-5 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 29-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Gene3D G3DSA:1.10.340.30 22 118 1.0E-26 T 29-03-2018 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 168 1.4E-22 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 PIRSF PIRSF001435 1 214 4.8E-59 T 29-03-2018 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Hamap MF_00942 Endonuclease III [nth]. 1 211 37.9 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 189 205 - T 29-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 SUPERFAMILY SSF48150 1 210 1.05E-70 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 SMART SM00525 188 208 0.002 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 SMART SM00478 39 187 1.2E-57 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 TIGRFAM TIGR01083 nth: endonuclease III 4 196 4.0E-82 T 29-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Pfam PF00633 Helix-hairpin-helix motif 101 128 5.2E-8 T 29-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CFE88_RS03965 34b92b100cafdcebe2793e59f1600ca9 219 Gene3D G3DSA:1.10.1670.10 119 219 7.3E-34 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 37 50 - T 29-03-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 Gene3D G3DSA:2.115.10.20 1 348 2.4E-89 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 341 483 1.4E-24 T 29-03-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 SUPERFAMILY SSF75005 28 337 7.38E-104 T 29-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 Gene3D G3DSA:2.60.120.560 349 483 1.5E-28 T 29-03-2018 CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 SMART SM00640 37 453 1.4E-142 T 29-03-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 37 337 1.0E-98 T 29-03-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 21 464 5.1E-182 T 29-03-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 CFE88_RS01575 6036c73c1356fc0b920ecfbc5edafa51 490 SUPERFAMILY SSF49899 337 489 1.66E-29 T 29-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain CFE88_RS00225 b0eefe2ce3494498ea137fe6eda42d15 203 Pfam PF01613 Flavin reductase like domain 23 165 1.4E-19 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 CFE88_RS00225 b0eefe2ce3494498ea137fe6eda42d15 203 SMART SM00903 20 174 4.2E-27 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 CFE88_RS00225 b0eefe2ce3494498ea137fe6eda42d15 203 SUPERFAMILY SSF50475 5 197 1.57E-45 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS00225 b0eefe2ce3494498ea137fe6eda42d15 203 Gene3D G3DSA:2.30.110.10 10 191 2.9E-48 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS06805 beab757c7c9a728738c7920d8cbc801d 438 Pfam PF13726 Na+-H+ antiporter family 3 89 6.5E-32 T 29-03-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal CFE88_RS06805 beab757c7c9a728738c7920d8cbc801d 438 Pfam PF03553 Na+/H+ antiporter family 151 431 3.0E-64 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CFE88_RS02210 8c005f2e62413b517a908850b5d93b08 199 SUPERFAMILY SSF100950 3 195 2.65E-22 T 29-03-2018 CFE88_RS02210 8c005f2e62413b517a908850b5d93b08 199 Gene3D G3DSA:3.40.50.1360 129 199 3.3E-8 T 29-03-2018 CFE88_RS02210 8c005f2e62413b517a908850b5d93b08 199 Gene3D G3DSA:3.40.50.1360 2 125 1.2E-4 T 29-03-2018 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 SUPERFAMILY SSF52096 3 310 2.49E-97 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 Gene3D G3DSA:3.90.226.10 27 308 1.2E-66 T 29-03-2018 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 84 95 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 165 178 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 193 202 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 130 146 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 109 127 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 149 162 1.6E-45 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 312 49.557 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 1 144 1.4E-63 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02820 78d4c4580a83228bcb4afb3b6aeb961f 314 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 1 313 3.5E-149 T 29-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 29-03-2018 IPR019844 Cold-shock conserved site CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 PIRSF PIRSF002599 1 66 6.8E-24 T 29-03-2018 IPR012156 Cold shock, CspA GO:0003676 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 SUPERFAMILY SSF50249 1 65 1.62E-24 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 Gene3D G3DSA:2.40.50.140 1 66 2.6E-27 T 29-03-2018 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 PRINTS PR00050 Cold shock protein signature 39 57 2.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 PRINTS PR00050 Cold shock protein signature 4 19 2.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 PRINTS PR00050 Cold shock protein signature 24 33 2.2E-20 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 2.5E-30 T 29-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CFE88_RS07100 3e8481110139195605bd0e48462f4362 66 SMART SM00357 3 66 5.2E-28 T 29-03-2018 IPR011129 Cold shock domain GO:0003676 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 SUPERFAMILY SSF46689 8 57 1.34E-7 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 SUPERFAMILY SSF55136 133 285 3.4E-14 T 29-03-2018 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 SMART SM00342 24 107 1.2E-8 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 Pfam PF12833 Helix-turn-helix domain 30 105 8.9E-11 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 Gene3D G3DSA:3.90.1240.10 1 137 7.5E-18 T 29-03-2018 CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 Pfam PF14526 Integron-associated effector binding protein 134 283 6.5E-20 T 29-03-2018 IPR029441 Integron-associated effector binding protein CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 SMART SM00871 131 284 7.4E-11 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding CFE88_RS03735 3d12d522bb03b4247c9335d4c0c5e1a1 296 Gene3D G3DSA:3.20.80.10 138 285 2.3E-15 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain CFE88_RS03745 16df7134a4b8c4157a2fac45801506ec 306 Hamap MF_01818 Ribonuclease BN [rbn]. 1 306 35.679 T 29-03-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CFE88_RS03745 16df7134a4b8c4157a2fac45801506ec 306 Gene3D G3DSA:3.60.15.10 1 306 1.3E-54 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03745 16df7134a4b8c4157a2fac45801506ec 306 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 306 4.2E-108 T 29-03-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CFE88_RS03745 16df7134a4b8c4157a2fac45801506ec 306 SUPERFAMILY SSF56281 1 305 8.91E-70 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03745 16df7134a4b8c4157a2fac45801506ec 306 Pfam PF12706 Beta-lactamase superfamily domain 39 151 4.6E-10 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05490 85f0a548e7815f17672b0fa4bcc658ea 220 SUPERFAMILY SSF55174 1 89 6.67E-31 T 29-03-2018 CFE88_RS05490 85f0a548e7815f17672b0fa4bcc658ea 220 SUPERFAMILY SSF55174 140 213 6.67E-31 T 29-03-2018 CFE88_RS05490 85f0a548e7815f17672b0fa4bcc658ea 220 Gene3D G3DSA:3.10.290.10 140 202 5.3E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS05490 85f0a548e7815f17672b0fa4bcc658ea 220 Pfam PF01479 S4 domain 144 188 4.0E-8 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS05490 85f0a548e7815f17672b0fa4bcc658ea 220 SMART SM00363 143 212 9.4E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 PIRSF PIRSF004555 3 105 1.4E-38 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 Gene3D G3DSA:3.30.1310.10 1 105 3.3E-36 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 4 105 1.5E-30 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 99 23.083 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 SUPERFAMILY SSF82607 11 105 2.49E-33 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS08990 d067b6e391afb7f9275a4c97ab2c7a5f 105 Pfam PF02575 YbaB/EbfC DNA-binding family 11 101 2.9E-33 T 29-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CFE88_RS10705 86bfe1536a2544d55e4bd90a3fdea120 516 Pfam PF09822 ABC-type uncharacterized transport system 33 139 3.4E-8 T 29-03-2018 IPR019196 ABC-type uncharacterised transport system Reactome: R-HSA-5610787|Reactome: R-HSA-5620924 CFE88_RS10705 86bfe1536a2544d55e4bd90a3fdea120 516 Gene3D G3DSA:3.40.50.880 29 337 8.3E-38 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10705 86bfe1536a2544d55e4bd90a3fdea120 516 SUPERFAMILY SSF52317 265 325 1.46E-9 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10705 86bfe1536a2544d55e4bd90a3fdea120 516 SUPERFAMILY SSF52317 39 149 1.46E-9 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10705 86bfe1536a2544d55e4bd90a3fdea120 516 SUPERFAMILY SSF52317 206 230 1.46E-9 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 SMART SM00382 52 183 1.8E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 261 332 6.0E-37 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 164.48 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 4 236 5.6E-115 T 29-03-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 SUPERFAMILY SSF52540 21 253 2.77E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 327 1.5E-143 T 29-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 4.7E-34 T 29-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Gene3D G3DSA:1.10.8.60 185 255 1.9E-29 T 29-03-2018 CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 SUPERFAMILY SSF46785 258 329 1.13E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Gene3D G3DSA:1.10.10.10 258 328 9.7E-34 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03065 46f300e920ed23f578064309f7db58f0 334 Gene3D G3DSA:3.40.50.300 19 182 1.5E-30 T 29-03-2018 CFE88_RS04935 1350dd0453fbf662b7dc20116188acbc 308 Gene3D G3DSA:3.40.50.1820 1 308 7.6E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04935 1350dd0453fbf662b7dc20116188acbc 308 Pfam PF12146 Serine aminopeptidase, S33 29 287 3.7E-60 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS04935 1350dd0453fbf662b7dc20116188acbc 308 SUPERFAMILY SSF53474 8 300 1.79E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 Gene3D G3DSA:3.30.70.260 292 361 1.7E-8 T 29-03-2018 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 SUPERFAMILY SSF55021 290 359 6.42E-9 T 29-03-2018 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 SUPERFAMILY SSF48179 175 283 9.18E-32 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 Gene3D G3DSA:1.10.3660.10 183 291 2.5E-23 T 29-03-2018 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 Pfam PF02153 Prephenate dehydrogenase 16 270 3.3E-64 T 29-03-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 Gene3D G3DSA:3.40.50.720 1 173 1.3E-17 T 29-03-2018 CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 Pfam PF01842 ACT domain 297 355 2.3E-7 T 29-03-2018 IPR002912 ACT domain CFE88_RS04405 43ec47c1aafd4a4d65fa0d2e5c5fce6d 362 SUPERFAMILY SSF51735 4 166 2.28E-35 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS07900 6b257ef4f8d502adfe5ef4a7c193d085 158 SUPERFAMILY SSF51182 1 154 1.36E-57 T 29-03-2018 IPR011051 RmlC-like cupin domain CFE88_RS07900 6b257ef4f8d502adfe5ef4a7c193d085 158 Gene3D G3DSA:2.60.120.10 1 154 1.3E-57 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS07900 6b257ef4f8d502adfe5ef4a7c193d085 158 Pfam PF06172 Cupin superfamily (DUF985) 6 132 1.2E-42 T 29-03-2018 IPR009327 Cupin domain of unknown function DUF985 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 Pfam PF01960 ArgJ family 16 397 6.1E-147 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 397 141.541 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 SUPERFAMILY SSF56266 11 393 2.62E-137 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 4 397 4.0E-149 T 29-03-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 Gene3D G3DSA:3.60.70.12 3 270 7.1E-98 T 29-03-2018 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CFE88_RS03630 313e3ebec016e3779cb103e4701fbddb 397 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 29 397 0.0 T 29-03-2018 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 411 559 2.1E-49 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Gene3D G3DSA:3.40.50.970 22 216 6.5E-61 T 29-03-2018 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 218 353 1.0E-44 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Gene3D G3DSA:3.40.50.1220 217 371 1.6E-47 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 SUPERFAMILY SSF52518 27 202 1.68E-59 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 SUPERFAMILY SSF52467 212 378 4.21E-58 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Gene3D G3DSA:3.40.50.970 372 578 1.9E-51 T 29-03-2018 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 SUPERFAMILY SSF52518 389 581 1.66E-68 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 448 467 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 30 190 7.3E-55 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CFE88_RS01500 9fc8469207a15de2d1be23902a8b77c7 583 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 30 580 2.1E-229 T 29-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 Pfam PF13353 4Fe-4S single cluster domain 15 145 9.3E-18 T 29-03-2018 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 PIRSF PIRSF000371 44 247 1.1E-46 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 PIRSF PIRSF000371 2 49 9.6E-12 T 29-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 Gene3D G3DSA:3.80.30.10 68 249 3.4E-39 T 29-03-2018 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 Pfam PF04055 Radical SAM superfamily 24 187 3.6E-27 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 29-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 238 6.7E-98 T 29-03-2018 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 CFE88_RS10355 b92f45209bbbb00237583fd4104d715a 251 SUPERFAMILY SSF102114 22 224 4.71E-27 T 29-03-2018 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 PIRSF PIRSF000497 1 397 5.9E-176 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Gene3D G3DSA:3.30.300.10 13 148 1.7E-42 T 29-03-2018 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 246 385 1.3E-70 T 29-03-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 395 1.3E-184 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Gene3D G3DSA:3.30.300.10 155 271 5.9E-44 T 29-03-2018 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 SUPERFAMILY SSF55973 124 245 1.33E-49 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 396 57.716 T 29-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 272 280 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Pfam PF02772 S-adenosylmethionine synthetase, central domain 127 244 3.1E-46 T 29-03-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 1.3E-41 T 29-03-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 128 138 - T 29-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 SUPERFAMILY SSF55973 5 111 6.28E-46 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 SUPERFAMILY SSF55973 246 397 1.14E-70 T 29-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CFE88_RS02435 8c3aeea0a5943f1817b9649253402e35 399 Gene3D G3DSA:3.30.300.10 272 398 8.9E-49 T 29-03-2018 CFE88_RS05990 ac101f91994d94470e5bf1db5612ec89 188 Pfam PF00551 Formyl transferase 3 183 4.2E-57 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05990 ac101f91994d94470e5bf1db5612ec89 188 SUPERFAMILY SSF53328 3 187 1.09E-55 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05990 ac101f91994d94470e5bf1db5612ec89 188 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 26.393 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CFE88_RS05990 ac101f91994d94470e5bf1db5612ec89 188 Gene3D G3DSA:3.40.50.170 1 188 1.9E-61 T 29-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CFE88_RS05990 ac101f91994d94470e5bf1db5612ec89 188 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 187 1.0E-62 T 29-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CFE88_RS03145 cef0f3fb3d6370c8ace97425d2977172 140 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 29-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site CFE88_RS03145 cef0f3fb3d6370c8ace97425d2977172 140 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 124 2.1E-31 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type CFE88_RS03145 cef0f3fb3d6370c8ace97425d2977172 140 SUPERFAMILY SSF46785 2 125 2.23E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03145 cef0f3fb3d6370c8ace97425d2977172 140 Pfam PF02082 Transcriptional regulator 1 82 1.4E-26 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type CFE88_RS03145 cef0f3fb3d6370c8ace97425d2977172 140 Gene3D G3DSA:1.10.10.10 1 140 2.4E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 Pfam PF00467 KOW motif 131 164 7.1E-5 T 29-03-2018 IPR005824 KOW CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 7 182 27.091 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 SUPERFAMILY SSF82679 8 119 6.8E-39 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 SUPERFAMILY SSF50104 126 182 2.84E-18 T 29-03-2018 IPR008991 Translation protein SH3-like domain CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 10 182 1.3E-60 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 Gene3D G3DSA:2.30.30.30 123 182 4.1E-19 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 Pfam PF02357 Transcription termination factor nusG 8 114 1.6E-27 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 SMART SM00738 7 118 1.9E-47 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 PRINTS PR00338 Transcription termination factor NUSG signature 62 74 3.5E-18 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 PRINTS PR00338 Transcription termination factor NUSG signature 140 155 3.5E-18 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 PRINTS PR00338 Transcription termination factor NUSG signature 158 174 3.5E-18 T 29-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 Gene3D G3DSA:3.30.70.940 7 121 9.1E-43 T 29-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CFE88_RS08595 f8c04c72d5b67aec37c622d1e1d8547c 182 ProSitePatterns PS01014 Transcription termination factor nusG signature. 165 174 - T 29-03-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 SUPERFAMILY SSF56601 298 672 6.84E-82 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 SUPERFAMILY SSF53955 70 279 3.94E-67 T 29-03-2018 IPR023346 Lysozyme-like domain CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 Pfam PF00905 Penicillin binding protein transpeptidase domain 359 627 5.6E-27 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 Gene3D G3DSA:3.40.710.10 283 710 4.1E-70 T 29-03-2018 CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 Gene3D G3DSA:1.10.3810.10 72 272 1.4E-71 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS03975 a3a4716b6543534246bed45ed9293340 743 Pfam PF00912 Transglycosylase 80 255 1.4E-59 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS09260 ecda535307c670fbe5ab7155f155b634 67 Gene3D G3DSA:1.10.260.40 2 67 6.6E-9 T 29-03-2018 CFE88_RS09260 ecda535307c670fbe5ab7155f155b634 67 SUPERFAMILY SSF47413 3 48 7.04E-7 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Pfam PF07085 DRTGG domain 75 176 4.4E-27 T 29-03-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 SUPERFAMILY SSF54631 182 305 7.58E-25 T 29-03-2018 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 SUPERFAMILY SSF54637 336 430 1.44E-8 T 29-03-2018 IPR029069 HotDog domain CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Gene3D G3DSA:3.40.1390.20 69 187 5.7E-27 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Gene3D G3DSA:3.10.129.10 298 431 1.9E-14 T 29-03-2018 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Gene3D G3DSA:3.10.580.10 188 297 2.0E-22 T 29-03-2018 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Pfam PF00571 CBS domain 213 243 1.8E-4 T 29-03-2018 IPR000644 CBS domain CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Pfam PF00571 CBS domain 252 304 2.0E-4 T 29-03-2018 IPR000644 CBS domain CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 58 4.5E-5 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 SMART SM00116 199 247 1.8 T 29-03-2018 IPR000644 CBS domain CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 SMART SM00116 258 306 7.7 T 29-03-2018 IPR000644 CBS domain CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 SUPERFAMILY SSF75138 71 183 3.27E-28 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like CFE88_RS02795 75c7b0a05117df3ad7df22634bba4ee0 432 Gene3D G3DSA:1.10.10.10 4 68 1.1E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 29-03-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 Gene3D G3DSA:2.40.150.20 1 122 1.0E-51 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.009 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 SMART SM01374 1 122 1.7E-84 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 SUPERFAMILY SSF50193 1 122 8.11E-50 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 6.0E-54 T 29-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CFE88_RS00665 eca205523498c2c6f93d68573fcec088 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 8.8E-58 T 29-03-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Pfam PF00204 DNA gyrase B 231 400 8.0E-62 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 SUPERFAMILY SSF55874 14 222 2.88E-72 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 230 252 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 480 489 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 613 629 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 322 338 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 384 404 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 597 609 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 370 384 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 204 217 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 14 24 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR01159 DNA gyrase subunit B signature 189 204 6.0E-74 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 SUPERFAMILY SSF54211 231 401 8.35E-59 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 ProSitePatterns PS00177 DNA topoisomerase II signature. 432 440 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 11 643 92.806 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 573 633 3.2E-29 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Pfam PF01751 Toprim domain 429 540 4.0E-17 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Gene3D G3DSA:3.30.230.10 235 402 2.9E-62 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 14 639 2.8E-302 T 29-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Gene3D G3DSA:3.40.50.670 409 640 7.9E-103 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 SMART SM00387 39 183 1.9E-23 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 121 135 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 514 531 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 576 592 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 43 58 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 430 444 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 78 91 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 278 291 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 534 546 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 PRINTS PR00418 DNA topoisomerase II family signature 496 512 3.0E-70 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Gene3D G3DSA:3.30.565.10 24 234 1.9E-76 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 40 182 2.1E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 SUPERFAMILY SSF56719 404 635 9.42E-92 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CFE88_RS09720 25c719faa2cbf39bc9a2c592c371d698 643 SMART SM00433 43 637 0.0 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 Pfam PF00588 SpoU rRNA Methylase family 4 144 7.2E-32 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 3 153 33.848 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 SUPERFAMILY SSF75217 4 154 2.68E-40 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 PIRSF PIRSF029256 2 156 2.9E-66 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 4 155 2.1E-62 T 29-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 CFE88_RS02205 6abc8d173102f92e3927deb8f717cf11 156 Gene3D G3DSA:3.40.1280.10 1 156 3.0E-38 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS01600 9bb73abdd0b0ce913c3167927590ff0e 187 Hamap MF_00784 Accessory gene regulator protein B [agrB]. 3 187 19.447 T 29-03-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CFE88_RS01600 9bb73abdd0b0ce913c3167927590ff0e 187 SMART SM00793 6 187 8.8E-74 T 29-03-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CFE88_RS01600 9bb73abdd0b0ce913c3167927590ff0e 187 Pfam PF04647 Accessory gene regulator B 9 177 1.2E-30 T 29-03-2018 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 CFE88_RS10225 465634bae8a70c84a753a57846211668 643 SUPERFAMILY SSF53474 260 607 2.44E-46 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10225 465634bae8a70c84a753a57846211668 643 Pfam PF04650 YSIRK type signal peptide 6 30 3.1E-9 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS10225 465634bae8a70c84a753a57846211668 643 Gene3D G3DSA:3.40.50.1820 251 640 1.1E-93 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10225 465634bae8a70c84a753a57846211668 643 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 2 39 3.4E-11 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Gene3D G3DSA:1.10.150.20 241 314 9.4E-26 T 29-03-2018 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 1.5E-23 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 SUPERFAMILY SSF47789 247 312 7.06E-23 T 29-03-2018 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 59 152 1.6E-22 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 SUPERFAMILY SSF55257 172 226 1.83E-31 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 SUPERFAMILY SSF55257 8 50 1.83E-31 T 29-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 35.767 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Gene3D G3DSA:3.30.1360.10 113 224 7.1E-28 T 29-03-2018 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Gene3D G3DSA:3.30.1360.10 1 112 4.6E-17 T 29-03-2018 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 SMART SM00662 20 227 2.7E-99 T 29-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 SUPERFAMILY SSF56553 50 171 3.53E-38 T 29-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 21 312 8.3E-118 T 29-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 314 2.0E-23 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS00745 132ea002de7566d977a45934cfd1359d 314 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 304 2.2E-28 T 29-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Pfam PF13167 GTP-binding GTPase N-terminal 36 123 1.2E-29 T 29-03-2018 IPR025121 GTPase HflX, N-terminal CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Hamap MF_00900 GTPase HflX [hflX]. 38 397 42.161 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Gene3D G3DSA:3.40.50.300 27 258 4.4E-14 T 29-03-2018 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 278 296 1.7E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 231 1.7E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 19 366 8.4E-139 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 SUPERFAMILY SSF52540 209 380 1.85E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Pfam PF01926 50S ribosome-binding GTPase 210 329 2.4E-18 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Pfam PF16360 GTP-binding GTPase Middle Region 125 203 1.1E-31 T 29-03-2018 IPR032305 GTP-binding protein, middle domain CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 Gene3D G3DSA:3.40.50.300 259 392 1.4E-13 T 29-03-2018 CFE88_RS04915 a24a7b198ea790240c921faf735087ee 416 PIRSF PIRSF006809 9 416 4.1E-145 T 29-03-2018 IPR016496 GTPase HflX GO:0005525 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 Gene3D G3DSA:3.40.1780.10 186 354 2.3E-66 T 29-03-2018 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 Gene3D G3DSA:3.40.1780.10 6 146 6.2E-43 T 29-03-2018 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 15 354 4.2E-144 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 Pfam PF02547 Queuosine biosynthesis protein 17 353 1.4E-140 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 SUPERFAMILY SSF111337 15 354 1.44E-138 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CFE88_RS03070 fda0f7f8991a431f9e68f6770cb7d1c4 354 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 14 354 46.185 T 29-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 143 217 7.9E-27 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 Pfam PF00072 Response regulator receiver domain 4 113 6.2E-29 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 SUPERFAMILY SSF46894 119 218 7.37E-31 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 SUPERFAMILY SSF52172 3 118 1.04E-39 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 SMART SM00862 143 218 3.8E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 Gene3D G3DSA:3.40.50.2300 1 116 4.3E-34 T 29-03-2018 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 SMART SM00448 2 112 3.8E-43 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS04135 e795ed2d3f0833bc2e4ad5d4516a7ddf 219 Gene3D G3DSA:1.10.10.10 117 219 1.2E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 PIRSF PIRSF015601 3 251 3.4E-60 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 SUPERFAMILY SSF88697 4 74 1.22E-14 T 29-03-2018 IPR015947 PUA-like domain CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 SUPERFAMILY SSF75217 76 250 2.32E-51 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 Gene3D G3DSA:3.40.1280.10 2 252 4.6E-71 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 Pfam PF04452 RNA methyltransferase 21 247 9.9E-74 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS03365 7405dcdf4ce5736fa218469cc7c1b593 253 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 9 248 2.5E-62 T 29-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 15 177 1.3E-30 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 419 483 2.7E-5 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 14 428 1.6E-133 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 SUPERFAMILY SSF52518 373 544 9.72E-21 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Pfam PF16582 Middle domain of thiamine pyrophosphate 201 387 1.8E-15 T 29-03-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 5 549 33.476 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Gene3D G3DSA:3.40.50.970 353 552 2.7E-22 T 29-03-2018 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 SUPERFAMILY SSF52518 16 181 3.48E-33 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Gene3D G3DSA:3.40.50.970 2 203 1.3E-48 T 29-03-2018 CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 Gene3D G3DSA:3.40.50.1220 204 352 3.5E-20 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS06130 811b50386aca747464287cccd00edbcf 557 PIRSF PIRSF004983 2 556 6.0E-191 T 29-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 368 57.297 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 372 1.8E-170 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 Gene3D G3DSA:3.20.20.105 1 372 3.2E-165 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 365 8.4E-95 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 372 5.4E-180 T 29-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS03075 5426d65254c25b9c25141c6bebf3c297 379 SUPERFAMILY SSF51713 2 369 1.11E-163 T 29-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 Hamap MF_01217 Acyl carrier protein [acpP]. 2 76 22.709 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 Pfam PF00550 Phosphopantetheine attachment site 5 72 1.2E-16 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 31 46 - T 29-03-2018 IPR006162 Phosphopantetheine attachment site CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 4 74 5.1E-33 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 SUPERFAMILY SSF47336 4 75 1.83E-23 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 Gene3D G3DSA:1.10.1200.10 1 77 4.4E-26 T 29-03-2018 CFE88_RS05285 85949656a22f5265b422b676639f6e16 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 74 2.0E-11 T 29-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 PIRSF PIRSF005962 1 372 1.4E-111 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 7 357 5.3E-117 T 29-03-2018 IPR017439 Amidohydrolase GO:0016787 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 SUPERFAMILY SSF55031 173 282 6.28E-28 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 Gene3D G3DSA:3.40.630.10 2 223 3.5E-40 T 29-03-2018 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 Gene3D G3DSA:3.40.630.10 237 372 1.0E-14 T 29-03-2018 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 SUPERFAMILY SSF53187 288 371 5.09E-72 T 29-03-2018 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 SUPERFAMILY SSF53187 4 187 5.09E-72 T 29-03-2018 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 Pfam PF01546 Peptidase family M20/M25/M40 64 368 1.7E-27 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS00215 53af80aba70f51fca79fd73c25541526 372 Pfam PF07687 Peptidase dimerisation domain 176 267 1.3E-8 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS12515 b9e8e97b78674bf3ec61e4509099cf59 418 Gene3D G3DSA:1.20.5.50 63 148 7.7E-4 T 29-03-2018 CFE88_RS12480 b9e8e97b78674bf3ec61e4509099cf59 418 Gene3D G3DSA:1.20.5.50 63 148 7.7E-4 T 29-03-2018 CFE88_RS00280 368695d69249e2c21bd8ef3f4757ac32 458 PIRSF PIRSF006060 1 458 1.1E-73 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS00280 368695d69249e2c21bd8ef3f4757ac32 458 Pfam PF00324 Amino acid permease 15 430 2.2E-102 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS00280 368695d69249e2c21bd8ef3f4757ac32 458 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 29-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CFE88_RS05875 9e01c5f099d3ab81d68de640470b3caa 370 Pfam PF00676 Dehydrogenase E1 component 53 342 2.3E-98 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 CFE88_RS05875 9e01c5f099d3ab81d68de640470b3caa 370 SUPERFAMILY SSF52518 17 365 3.32E-101 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05875 9e01c5f099d3ab81d68de640470b3caa 370 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 23 363 7.2E-145 T 29-03-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CFE88_RS05875 9e01c5f099d3ab81d68de640470b3caa 370 Gene3D G3DSA:3.40.50.970 3 363 3.9E-85 T 29-03-2018 CFE88_RS09125 518ff43591aa143c54bf5d216ca21ddc 855 Hamap MF_01871 UPF0753 protein . 5 855 23.398 T 29-03-2018 IPR018752 Uncharacterised protein family UPF0753 CFE88_RS09125 518ff43591aa143c54bf5d216ca21ddc 855 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 10 841 6.8E-258 T 29-03-2018 IPR018752 Uncharacterised protein family UPF0753 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 SMART SM00098 57 483 1.5E-128 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 Pfam PF00245 Alkaline phosphatase 57 478 1.1E-110 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 SUPERFAMILY SSF53649 48 387 7.36E-122 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 SUPERFAMILY SSF53649 424 483 7.36E-122 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 Gene3D G3DSA:3.40.720.10 15 489 3.8E-118 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 PRINTS PR00113 Alkaline phosphatase signature 111 126 2.5E-41 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 PRINTS PR00113 Alkaline phosphatase signature 264 293 2.5E-41 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 PRINTS PR00113 Alkaline phosphatase signature 148 168 2.5E-41 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 PRINTS PR00113 Alkaline phosphatase signature 198 208 2.5E-41 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 PRINTS PR00113 Alkaline phosphatase signature 56 76 2.5E-41 T 29-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS11120 ccde9cee11ed66b9ccc9063bde9ab61e 489 ProSitePatterns PS00123 Alkaline phosphatase active site. 111 119 - T 29-03-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Pfam PF02254 TrkA-N domain 445 513 6.2E-6 T 29-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 SUPERFAMILY SSF116726 541 611 1.7E-8 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Pfam PF00999 Sodium/hydrogen exchanger family 7 387 3.3E-74 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Gene3D G3DSA:1.20.91.10 240 321 9.9E-18 T 29-03-2018 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Pfam PF02080 TrkA-C domain 559 610 1.7E-8 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Gene3D G3DSA:3.30.70.1450 540 612 7.9E-9 T 29-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 SUPERFAMILY SSF51735 405 514 5.12E-10 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06520 14dd2da14e4152dfff8ab82c3cc7cde6 614 Gene3D G3DSA:3.40.50.720 396 528 2.8E-6 T 29-03-2018 CFE88_RS00300 0c3b3f542e7ce15d20989765552aac5f 350 SUPERFAMILY SSF51445 1 229 5.48E-59 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily CFE88_RS00300 0c3b3f542e7ce15d20989765552aac5f 350 Gene3D G3DSA:3.20.20.70 1 228 1.7E-60 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS00300 0c3b3f542e7ce15d20989765552aac5f 350 SUPERFAMILY SSF50891 229 343 7.96E-33 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS00300 0c3b3f542e7ce15d20989765552aac5f 350 Pfam PF05913 Bacterial protein of unknown function (DUF871) 1 342 3.3E-94 T 29-03-2018 IPR008589 Protein of unknown function DUF871, prokaryotic CFE88_RS00300 0c3b3f542e7ce15d20989765552aac5f 350 Gene3D G3DSA:2.40.100.10 236 344 7.4E-30 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS06850 3aee68a55c78fa7fafaef74060e82cfe 78 Gene3D G3DSA:1.10.1200.10 1 78 3.0E-9 T 29-03-2018 CFE88_RS06850 3aee68a55c78fa7fafaef74060e82cfe 78 Pfam PF00550 Phosphopantetheine attachment site 5 74 5.8E-8 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS06850 3aee68a55c78fa7fafaef74060e82cfe 78 SUPERFAMILY SSF47336 2 77 7.49E-13 T 29-03-2018 IPR009081 Phosphopantetheine binding ACP domain CFE88_RS06850 3aee68a55c78fa7fafaef74060e82cfe 78 TIGRFAM TIGR01688 dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2 4 76 1.2E-41 T 29-03-2018 IPR003230 D-alanine--poly(phosphoribitol) ligase subunit 2 GO:0019350|GO:0036370 KEGG: 00473+6.1.1.13 CFE88_RS06850 3aee68a55c78fa7fafaef74060e82cfe 78 Hamap MF_00565 D-alanine--poly(phosphoribitol) ligase subunit 2 [dltC]. 1 78 46.529 T 29-03-2018 IPR003230 D-alanine--poly(phosphoribitol) ligase subunit 2 GO:0019350|GO:0036370 KEGG: 00473+6.1.1.13 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 444 3.2E-162 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 PIRSF PIRSF000521 22 447 5.3E-38 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 SUPERFAMILY SSF53383 10 445 1.48E-124 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 Pfam PF00202 Aminotransferase class-III 28 444 3.0E-118 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 447 50.336 T 29-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 Gene3D G3DSA:3.90.1150.10 1 193 7.8E-48 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS10200 69ac2b79543c84b63531e12545d7bc49 451 Gene3D G3DSA:3.90.1150.10 265 447 9.9E-51 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 Gene3D G3DSA:3.40.50.720 1 156 4.9E-32 T 29-03-2018 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 156 312 3.4E-20 T 29-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 335 39.273 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 1 340 8.8E-117 T 29-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 SMART SM00859 2 140 2.5E-32 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 132 9.3E-26 T 29-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 Gene3D G3DSA:3.30.360.10 157 309 2.4E-50 T 29-03-2018 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 142 158 - T 29-03-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 SUPERFAMILY SSF55347 147 309 3.27E-48 T 29-03-2018 CFE88_RS03625 1da6cacda0d224d5385bbf71b3349e72 341 SUPERFAMILY SSF51735 2 173 2.37E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS07840 15bb02ca51f67812e36ae56582e36731 188 SUPERFAMILY SSF102405 1 179 1.53E-57 T 29-03-2018 CFE88_RS07840 15bb02ca51f67812e36ae56582e36731 188 Pfam PF03641 Possible lysine decarboxylase 46 174 7.3E-44 T 29-03-2018 IPR031100 LOG family CFE88_RS07840 15bb02ca51f67812e36ae56582e36731 188 Gene3D G3DSA:3.40.50.450 1 178 9.0E-55 T 29-03-2018 CFE88_RS07840 15bb02ca51f67812e36ae56582e36731 188 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 179 7.5E-60 T 29-03-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 37 418 9.5E-115 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 29 450 39.473 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 Pfam PF01566 Natural resistance-associated macrophage protein 58 424 4.7E-119 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 222 245 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 332 351 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 360 377 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 394 413 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 170 191 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 145 164 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS05815 b1240462850c5887527bc951886ba1f0 453 PRINTS PR00447 Natural resistance-associated macrophage protein signature 117 143 1.4E-63 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS03665 11d865f86686b2eb0b2d025d7bd51407 445 Gene3D G3DSA:2.40.50.140 4 101 2.6E-10 T 29-03-2018 CFE88_RS03665 11d865f86686b2eb0b2d025d7bd51407 445 Pfam PF02601 Exonuclease VII, large subunit 123 435 2.6E-93 T 29-03-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 CFE88_RS03665 11d865f86686b2eb0b2d025d7bd51407 445 Pfam PF13742 OB-fold nucleic acid binding domain 5 100 3.2E-28 T 29-03-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 CFE88_RS03665 11d865f86686b2eb0b2d025d7bd51407 445 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 2 438 27.362 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS03665 11d865f86686b2eb0b2d025d7bd51407 445 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 6 343 9.8E-132 T 29-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 1 293 40.259 T 29-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 SUPERFAMILY SSF53697 2 246 1.75E-73 T 29-03-2018 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 Pfam PF01380 SIS domain 126 206 5.0E-11 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 4 294 2.2E-115 T 29-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 Gene3D G3DSA:1.10.8.10 239 265 0.0024 T 29-03-2018 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 Gene3D G3DSA:1.10.8.10 266 294 2.3E-4 T 29-03-2018 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 183 200 - T 29-03-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 CFE88_RS00295 41a6c16258913cfe9d9faff37f2f6da5 295 Gene3D G3DSA:3.40.50.10490 8 238 5.5E-52 T 29-03-2018 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 Pfam PF01022 Bacterial regulatory protein, arsR family 15 61 2.5E-15 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 9.0E-19 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 9.0E-19 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 9.0E-19 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 9.0E-19 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 Gene3D G3DSA:1.10.10.10 6 75 1.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 SUPERFAMILY SSF46785 3 84 3.8E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 SMART SM00418 8 85 1.6E-26 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09995 843cff676e0161e6364b8501befc641f 104 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 31 49 - T 29-03-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 4 408 1.2E-140 T 29-03-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 364 386 4.4E-9 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 4.4E-9 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 4.4E-9 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 Pfam PF03486 HI0933-like protein 3 408 1.5E-152 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 SUPERFAMILY SSF160996 189 357 1.96E-46 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.1E-5 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.1E-5 T 29-03-2018 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 Gene3D G3DSA:3.50.50.60 1 413 1.6E-47 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 SUPERFAMILY SSF51905 2 190 1.51E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02570 e1a876d4a0c580a0c948816a9bfbdc10 420 SUPERFAMILY SSF51905 354 411 1.51E-48 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02265 16b9abf9456dc43725d051c56aef8017 398 Pfam PF00149 Calcineurin-like phosphoesterase 3 192 2.2E-13 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CFE88_RS02265 16b9abf9456dc43725d051c56aef8017 398 PIRSF PIRSF033091 1 398 1.0E-152 T 29-03-2018 IPR014576 Predicted phosphoesterase, YhaO type CFE88_RS02265 16b9abf9456dc43725d051c56aef8017 398 Gene3D G3DSA:3.60.21.10 80 249 1.2E-16 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02265 16b9abf9456dc43725d051c56aef8017 398 Gene3D G3DSA:3.60.21.10 1 79 3.2E-14 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02265 16b9abf9456dc43725d051c56aef8017 398 SUPERFAMILY SSF56300 1 288 1.74E-45 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 Gene3D G3DSA:3.30.360.10 163 313 1.1E-61 T 29-03-2018 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PIRSF PIRSF000149 1 333 8.3E-121 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 101 4.8E-34 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 322 5.4E-124 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 SUPERFAMILY SSF55347 153 312 8.42E-65 T 29-03-2018 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 SUPERFAMILY SSF51735 1 152 1.52E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 2.2E-36 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 2.2E-36 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.2E-36 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 267 282 2.2E-36 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 2.2E-36 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 SMART SM00846 3 153 3.5E-70 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 311 3.7E-63 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 Gene3D G3DSA:3.40.50.720 1 162 4.1E-65 T 29-03-2018 CFE88_RS02880 bdaea87e2b564e4109f5668ef8e100c5 341 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 Pfam PF14815 NUDIX domain 234 342 6.5E-23 T 29-03-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 Gene3D G3DSA:3.90.79.10 228 346 2.7E-8 T 29-03-2018 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 164 7.2E-15 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 SUPERFAMILY SSF55811 219 345 2.28E-19 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 SMART SM00525 190 210 5.6E-4 T 29-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 Gene3D G3DSA:1.10.340.30 21 118 3.4E-28 T 29-03-2018 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 Gene3D G3DSA:1.10.1670.10 119 224 1.6E-31 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 SMART SM00478 39 189 9.8E-39 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 SUPERFAMILY SSF48150 8 221 1.08E-68 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 191 207 - T 29-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS01990 e150e89546b3e94ace3d4970e985934b 347 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 7 267 1.1E-96 T 29-03-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 CFE88_RS04090 ee9dc3d1fce4c30d09b7c2b0c4ec0c09 142 SUPERFAMILY SSF51316 5 139 1.36E-57 T 29-03-2018 IPR011057 Mss4-like CFE88_RS04090 ee9dc3d1fce4c30d09b7c2b0c4ec0c09 142 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 5 133 1.5E-59 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04090 ee9dc3d1fce4c30d09b7c2b0c4ec0c09 142 Pfam PF01641 SelR domain 6 124 7.0E-48 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS04090 ee9dc3d1fce4c30d09b7c2b0c4ec0c09 142 Gene3D G3DSA:2.170.150.20 2 141 8.4E-51 T 29-03-2018 CFE88_RS04090 ee9dc3d1fce4c30d09b7c2b0c4ec0c09 142 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 2 125 34.995 T 29-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.1E-5 T 29-03-2018 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 2.1E-5 T 29-03-2018 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 2.1E-5 T 29-03-2018 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 2.3E-6 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 163 187 2.3E-6 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 Gene3D G3DSA:3.50.50.60 167 368 2.3E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 Gene3D G3DSA:3.50.50.60 1 165 5.2E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 SUPERFAMILY SSF51905 1 258 3.46E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10245 cbd01d922558734598f269c5521a68f3 368 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 306 3.7E-98 T 29-03-2018 CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 Pfam PF01814 Hemerythrin HHE cation binding domain 85 222 5.3E-19 T 29-03-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 Gene3D G3DSA:1.10.3910.10 1 62 4.4E-14 T 29-03-2018 CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 Pfam PF04405 Domain of Unknown function (DUF542) 5 59 5.8E-19 T 29-03-2018 IPR019903 Repair of iron centres family CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 Hamap MF_01156 Iron-sulfur cluster repair protein ScdA [scdA]. 1 224 51.776 T 29-03-2018 IPR023551 Iron-sulfur cluster repair protein ScdA GO:0006979 CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 223 1.4E-76 T 29-03-2018 IPR019903 Repair of iron centres family CFE88_RS07895 fce984505f8ca50ea56231a8552c8b61 224 Gene3D G3DSA:1.20.120.520 63 224 1.0E-20 T 29-03-2018 CFE88_RS01595 cf583bb9950d4c2c9ffde785732c209c 46 TIGRFAM TIGR04223 quorum_AgrD: cyclic lactone autoinducer peptide 7 43 1.0E-9 T 29-03-2018 IPR009229 Staphylococcal AgrD CFE88_RS01595 cf583bb9950d4c2c9ffde785732c209c 46 Pfam PF05931 Staphylococcal AgrD protein 7 46 1.9E-14 T 29-03-2018 IPR009229 Staphylococcal AgrD CFE88_RS01595 cf583bb9950d4c2c9ffde785732c209c 46 SMART SM00794 2 46 4.8E-22 T 29-03-2018 IPR009229 Staphylococcal AgrD CFE88_RS01520 8273be8ea9e1fb8d80fd17f0942cb059 153 Gene3D G3DSA:3.40.630.30 3 153 1.3E-31 T 29-03-2018 CFE88_RS01520 8273be8ea9e1fb8d80fd17f0942cb059 153 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 18 148 1.4E-34 T 29-03-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 CFE88_RS01520 8273be8ea9e1fb8d80fd17f0942cb059 153 SUPERFAMILY SSF55729 10 152 4.07E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01520 8273be8ea9e1fb8d80fd17f0942cb059 153 Pfam PF00583 Acetyltransferase (GNAT) family 31 129 6.0E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 148 164 4.4E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 68 76 4.4E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 112 127 4.4E-17 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 Pfam PF01252 Signal peptidase (SPase) II 30 167 2.6E-35 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 TIGRFAM TIGR00077 lspA: signal peptidase II 26 167 2.5E-38 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 21 173 16.957 T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS05465 92bc66dedc4487c942c17e18ab7e0518 177 ProSitePatterns PS00855 Signal peptidases II signature. 115 127 - T 29-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 CFE88_RS07490 2f03ad0f393981155bc32ff3fdaf10d9 175 Gene3D G3DSA:3.30.460.10 4 173 5.1E-20 T 29-03-2018 CFE88_RS07490 2f03ad0f393981155bc32ff3fdaf10d9 175 Pfam PF04229 GrpB protein 15 169 1.6E-21 T 29-03-2018 IPR007344 GrpB/Dephospho-CoA kinase CFE88_RS07490 2f03ad0f393981155bc32ff3fdaf10d9 175 SUPERFAMILY SSF81301 16 170 6.87E-30 T 29-03-2018 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 10 332 8.8E-25 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 Gene3D G3DSA:3.40.50.720 2 117 4.8E-20 T 29-03-2018 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 Gene3D G3DSA:3.40.50.720 118 303 1.6E-43 T 29-03-2018 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 SUPERFAMILY SSF52283 1 136 3.4E-35 T 29-03-2018 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 300 6.0E-47 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 SUPERFAMILY SSF51735 103 302 2.73E-45 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11480 6ef015ade94d46159276d26bca3abb0a 332 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 149 177 - T 29-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 58.693 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 SUPERFAMILY SSF89447 1 136 2.47E-53 T 29-03-2018 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 Gene3D G3DSA:2.10.260.10 1 58 7.7E-4 T 29-03-2018 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 Gene3D G3DSA:2.10.260.10 73 124 1.5E-9 T 29-03-2018 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 136 1.0E-67 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 142 3.4E-55 T 29-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 1.0E-20 T 29-03-2018 IPR020603 MraZ domain CFE88_RS05555 bd48661bffe2eb7ec46bdabbe31c8b29 143 Pfam PF02381 MraZ protein, putative antitoxin-like 72 141 1.6E-28 T 29-03-2018 IPR020603 MraZ domain CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 SMART SM00861 4 179 1.7E-59 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 Gene3D G3DSA:3.40.50.920 195 326 1.3E-31 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 SUPERFAMILY SSF52922 189 324 4.58E-38 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 SUPERFAMILY SSF52518 3 193 1.18E-66 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 Gene3D G3DSA:3.40.50.970 1 194 1.2E-64 T 29-03-2018 CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 Pfam PF02780 Transketolase, C-terminal domain 194 317 6.9E-39 T 29-03-2018 IPR033248 Transketolase, C-terminal domain CFE88_RS03700 9f0411a1a1beaf32d143846af60a6281 327 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 3.5E-42 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 82.153 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 Pfam PF00889 Elongation factor TS 70 274 1.5E-75 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 SUPERFAMILY SSF46934 1 55 3.6E-21 T 29-03-2018 IPR009060 UBA-like GO:0005515 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 Gene3D G3DSA:1.10.8.10 1 55 2.0E-25 T 29-03-2018 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 SUPERFAMILY SSF54713 151 292 2.09E-50 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 292 8.4E-117 T 29-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 Gene3D G3DSA:3.30.479.20 156 290 8.8E-50 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 29-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 Gene3D G3DSA:3.30.479.20 57 155 1.1E-23 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS05160 4d4dcb19ecfef5e5985fc44ee34123d8 292 SUPERFAMILY SSF54713 55 142 6.21E-23 T 29-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS12165 f768197b188ac6adb8a69de1f76aa794 178 SUPERFAMILY SSF55729 1 158 5.23E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12165 f768197b188ac6adb8a69de1f76aa794 178 Gene3D G3DSA:3.40.630.30 1 171 8.6E-21 T 29-03-2018 CFE88_RS12165 f768197b188ac6adb8a69de1f76aa794 178 Pfam PF13508 Acetyltransferase (GNAT) domain 51 143 2.6E-9 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS05215 a863081e4dc0a7c08aeb3307ef97387f 256 Hamap MF_00052_B Ribonuclease HII [rnhB]. 73 251 34.409 T 29-03-2018 IPR022898 Ribonuclease HII GO:0004523 CFE88_RS05215 a863081e4dc0a7c08aeb3307ef97387f 256 SUPERFAMILY SSF53098 69 256 2.28E-65 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05215 a863081e4dc0a7c08aeb3307ef97387f 256 Gene3D G3DSA:3.30.420.10 48 256 2.5E-66 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05215 a863081e4dc0a7c08aeb3307ef97387f 256 Pfam PF01351 Ribonuclease HII 75 249 5.0E-36 T 29-03-2018 IPR024567 Ribonuclease HII/HIII domain CFE88_RS11245 3855ecaf7150f3ac8657746d94b50ef7 199 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 9 193 8.8E-84 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CFE88_RS11245 3855ecaf7150f3ac8657746d94b50ef7 199 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 25 197 39.195 T 29-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CFE88_RS11245 3855ecaf7150f3ac8657746d94b50ef7 199 Pfam PF01583 Adenylylsulphate kinase 26 180 4.8E-73 T 29-03-2018 CFE88_RS11245 3855ecaf7150f3ac8657746d94b50ef7 199 Gene3D G3DSA:3.40.50.300 22 199 1.6E-55 T 29-03-2018 CFE88_RS11245 3855ecaf7150f3ac8657746d94b50ef7 199 SUPERFAMILY SSF52540 23 195 2.76E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 5.7E-37 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 Gene3D G3DSA:4.10.520.10 1 90 1.6E-38 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-21 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-21 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-21 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 SUPERFAMILY SSF47729 1 90 1.91E-35 T 29-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 29-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CFE88_RS03870 326942751468e60f0078ef53b99bd928 90 SMART SM00411 1 90 3.5E-51 T 29-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 Pfam PF06418 CTP synthase N-terminus 3 267 2.4E-128 T 29-03-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 TIGRFAM TIGR00337 PyrG: CTP synthase 1 528 4.1E-257 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 Gene3D G3DSA:3.40.50.300 1 287 6.0E-132 T 29-03-2018 CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 SUPERFAMILY SSF52317 291 534 9.47E-85 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 Pfam PF00117 Glutamine amidotransferase class-I 303 528 3.5E-58 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 Gene3D G3DSA:3.40.50.880 288 535 7.4E-75 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 Hamap MF_01227 CTP synthase [pyrG]. 2 533 53.037 T 29-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CFE88_RS01140 1e7619890ffae4f3d38686c4d60d6042 535 SUPERFAMILY SSF52540 1 269 3.65E-125 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Gene3D G3DSA:3.50.50.60 252 318 1.6E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Gene3D G3DSA:3.50.50.60 1 121 1.5E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Gene3D G3DSA:3.50.50.60 122 251 2.2E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 331 428 3.2E-11 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 SUPERFAMILY SSF51905 1 315 5.95E-37 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 2.1E-19 T 29-03-2018 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 2.1E-19 T 29-03-2018 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.1E-19 T 29-03-2018 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 2.1E-19 T 29-03-2018 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 2.1E-19 T 29-03-2018 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Gene3D G3DSA:3.30.390.30 324 452 8.3E-16 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 270 288 2.0E-7 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 2.0E-7 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 2.0E-7 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 305 1.4E-54 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11330 0e307bf6fb0d2c33943770aa3163ed32 453 SUPERFAMILY SSF55424 323 443 1.89E-28 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 6.6E-26 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 SUPERFAMILY SSF52172 2 179 3.11E-34 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 Gene3D G3DSA:1.10.10.10 125 229 4.6E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 Gene3D G3DSA:3.40.50.2300 1 124 5.8E-31 T 29-03-2018 CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 SMART SM00448 2 112 1.5E-35 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 Pfam PF00072 Response regulator receiver domain 5 111 7.9E-28 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS07680 f84abb7b6da5198ec09f2190518e0044 229 SMART SM00862 149 225 1.7E-23 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS06675 9cbac72dd9f23f916683969282c09c42 301 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 95 297 6.0E-60 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CFE88_RS06675 9cbac72dd9f23f916683969282c09c42 301 Gene3D G3DSA:3.90.850.10 49 301 2.5E-69 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CFE88_RS06675 9cbac72dd9f23f916683969282c09c42 301 SUPERFAMILY SSF56529 82 298 2.09E-68 T 29-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 CFE88_RS01750 04d8c57db6dae8bb74632d5a2d799ab0 184 SUPERFAMILY SSF52499 2 182 2.35E-46 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CFE88_RS01750 04d8c57db6dae8bb74632d5a2d799ab0 184 Pfam PF00857 Isochorismatase family 5 178 1.1E-32 T 29-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 CFE88_RS01750 04d8c57db6dae8bb74632d5a2d799ab0 184 Gene3D G3DSA:3.40.50.850 1 184 3.6E-41 T 29-03-2018 CFE88_RS12705 07d5b189cc9eeb3a5b9a94240e87eb1b 287 Pfam PF01051 Initiator Replication protein 4 220 2.1E-49 T 29-03-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CFE88_RS12705 07d5b189cc9eeb3a5b9a94240e87eb1b 287 Gene3D G3DSA:1.10.10.10 1 133 1.9E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12705 07d5b189cc9eeb3a5b9a94240e87eb1b 287 SUPERFAMILY SSF46785 19 133 2.72E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12705 07d5b189cc9eeb3a5b9a94240e87eb1b 287 Gene3D G3DSA:1.10.10.10 139 233 2.6E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12705 07d5b189cc9eeb3a5b9a94240e87eb1b 287 SUPERFAMILY SSF46785 125 223 2.31E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 PIRSF PIRSF000915 1 259 5.0E-54 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 Gene3D G3DSA:3.40.50.1000 72 182 3.2E-33 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 Pfam PF13242 HAD-hyrolase-like 180 251 2.5E-15 T 29-03-2018 CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 SUPERFAMILY SSF56784 4 250 2.55E-64 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 TIGRFAM TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family 4 250 1.1E-97 T 29-03-2018 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 106 3.2E-26 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA CFE88_RS06875 a42d1f96e1f977a1058a9d1d98ceea87 259 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 8 229 7.5E-40 T 29-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 Gene3D G3DSA:3.40.50.300 197 743 8.0E-48 T 29-03-2018 CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 SMART SM00382 471 653 0.0018 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 SUPERFAMILY SSF103473 11 188 6.02E-5 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 SUPERFAMILY SSF52540 411 704 1.59E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 SUPERFAMILY SSF46785 729 794 1.63E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 Gene3D G3DSA:1.10.10.10 744 784 9.7E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 Pfam PF01580 FtsK/SpoIIIE family 449 632 6.2E-60 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 SMART SM00843 728 793 1.3E-34 T 29-03-2018 IPR018541 FtsK gamma domain CFE88_RS05065 20bf8c3c98fd78e47197c7829127b834 797 Pfam PF09397 Ftsk gamma domain 730 790 3.9E-28 T 29-03-2018 IPR018541 FtsK gamma domain CFE88_RS03230 72739163b03930055f532d201d233795 334 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 310 4.5E-84 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS03230 72739163b03930055f532d201d233795 334 SUPERFAMILY SSF50891 176 290 7.59E-9 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS03230 72739163b03930055f532d201d233795 334 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 283 3.4E-76 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS03230 72739163b03930055f532d201d233795 334 SMART SM00797 24 301 4.8E-122 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 SUPERFAMILY SSF54862 4 73 1.49E-14 T 29-03-2018 CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 68 7.8E-23 T 29-03-2018 CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 4.4E-8 T 29-03-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 4.4E-8 T 29-03-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 PRINTS PR00352 3Fe-4S ferredoxin signature 55 67 4.4E-8 T 29-03-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 CFE88_RS03820 8ea322103032ec0fd945b23d46b7b926 82 Gene3D G3DSA:3.30.70.20 2 82 2.6E-11 T 29-03-2018 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 530 654 8.9E-52 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 593 605 - T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 SUPERFAMILY SSF51261 528 665 1.46E-52 T 29-03-2018 IPR011055 Duplicated hybrid motif CFE88_RS11575 372feffec62648e2186a72ce64109171 675 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 440 457 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 SUPERFAMILY SSF55604 429 500 1.07E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 Pfam PF02378 Phosphotransferase system, EIIC 13 344 1.1E-95 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 531 651 1.0E-45 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 Gene3D G3DSA:3.30.1360.60 425 500 1.7E-25 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 502 6.7E-240 T 29-03-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 Gene3D G3DSA:2.70.70.10 522 675 9.2E-57 T 29-03-2018 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 Pfam PF00367 phosphotransferase system, EIIB 431 462 2.8E-13 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS11575 372feffec62648e2186a72ce64109171 675 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 404 486 3.6E-21 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS00030 fc898efd84e87277131d3095ff428288 721 Gene3D G3DSA:3.90.550.10 4 207 6.1E-32 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00030 fc898efd84e87277131d3095ff428288 721 Pfam PF00535 Glycosyl transferase family 2 5 126 4.8E-27 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CFE88_RS00030 fc898efd84e87277131d3095ff428288 721 SUPERFAMILY SSF53756 448 641 8.79E-15 T 29-03-2018 CFE88_RS00030 fc898efd84e87277131d3095ff428288 721 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 349 716 5.0E-138 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS00030 fc898efd84e87277131d3095ff428288 721 SUPERFAMILY SSF53448 3 204 2.58E-38 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08165 0f83880c70617f58fdddf6c53d624352 295 Gene3D G3DSA:3.40.50.1980 142 294 7.2E-33 T 29-03-2018 CFE88_RS08165 0f83880c70617f58fdddf6c53d624352 295 SUPERFAMILY SSF53807 40 293 5.49E-55 T 29-03-2018 CFE88_RS08165 0f83880c70617f58fdddf6c53d624352 295 Gene3D G3DSA:3.40.50.1980 25 141 4.7E-24 T 29-03-2018 CFE88_RS08165 0f83880c70617f58fdddf6c53d624352 295 Pfam PF01497 Periplasmic binding protein 42 268 1.7E-34 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CFE88_RS04390 af5e04d49364fb9b8225cc72369c3b64 331 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 4 325 3.4E-90 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CFE88_RS04390 af5e04d49364fb9b8225cc72369c3b64 331 Pfam PF00591 Glycosyl transferase family, a/b domain 75 322 9.4E-78 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS04390 af5e04d49364fb9b8225cc72369c3b64 331 SUPERFAMILY SSF52418 73 328 1.96E-72 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS04390 af5e04d49364fb9b8225cc72369c3b64 331 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 2 331 31.778 T 29-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CFE88_RS04390 af5e04d49364fb9b8225cc72369c3b64 331 Gene3D G3DSA:3.40.1030.10 70 330 6.4E-78 T 29-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS11665 811301cee77f33e073ce03d530f60d04 347 Pfam PF13303 Phosphotransferase system, EIIC 31 330 1.9E-43 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 5.0E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 5.0E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.0E-20 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 SUPERFAMILY SSF143034 2 64 3.4E-22 T 29-03-2018 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.5E-25 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 19.015 T 29-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 29-03-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS02915 a962cc78546df5eea7df4e7ca64c8e28 66 Pfam PF01632 Ribosomal protein L35 2 62 1.1E-24 T 29-03-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 9 92 26.947 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 SUPERFAMILY SSF110324 10 91 3.84E-32 T 29-03-2018 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 ProSitePatterns PS00831 Ribosomal protein L27 signature. 42 56 - T 29-03-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 36 77 1.0E-17 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 Gene3D G3DSA:2.40.50.100 28 92 4.5E-29 T 29-03-2018 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 TIGRFAM TIGR00062 L27: ribosomal protein bL27 9 89 2.6E-39 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 PRINTS PR00063 Ribosomal protein L27 signature 62 86 3.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 PRINTS PR00063 Ribosomal protein L27 signature 12 36 3.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 PRINTS PR00063 Ribosomal protein L27 signature 37 61 3.1E-38 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03045 eb6a448bad34a20966d25f28b105fb3e 94 Pfam PF01016 Ribosomal L27 protein 10 89 2.8E-34 T 29-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 5.3E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 5.3E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 5.3E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 5.3E-16 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 Gene3D G3DSA:1.20.5.1150 16 52 7.1E-19 T 29-03-2018 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 Pfam PF01165 Ribosomal protein S21 5 57 5.9E-22 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 58 1.1E-21 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 43 1.0E-8 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 29-03-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03375 edd9666bb5d02197589f136531470243 58 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.847 T 29-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS01015 e8fa042377776410fb31d359ae301193 285 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 278 2.3E-48 T 29-03-2018 IPR000150 Cof family GO:0016787 CFE88_RS01015 e8fa042377776410fb31d359ae301193 285 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 278 2.0E-52 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS01015 e8fa042377776410fb31d359ae301193 285 Gene3D G3DSA:3.40.50.1000 1 285 2.5E-33 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS01015 e8fa042377776410fb31d359ae301193 285 SUPERFAMILY SSF56784 1 282 1.77E-59 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS01015 e8fa042377776410fb31d359ae301193 285 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 250 4.0E-29 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 292 52.195 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 Gene3D G3DSA:1.10.443.10 109 286 1.0E-46 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 Gene3D G3DSA:1.10.150.130 1 108 8.2E-20 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 Pfam PF00589 Phage integrase family 109 278 1.8E-47 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 7 86 7.0E-15 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 SUPERFAMILY SSF47823 5 96 5.49E-18 T 29-03-2018 IPR010998 Integrase, Lambda-type, N-terminal CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 SUPERFAMILY SSF56349 104 290 2.21E-53 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CFE88_RS05185 c139bea5532fb7388b706cc9172362be 296 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 294 7.8E-104 T 29-03-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 SUPERFAMILY SSF53244 295 418 8.97E-24 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 Pfam PF08245 Mur ligase middle domain 44 267 1.7E-13 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 Gene3D G3DSA:3.40.1190.10 1 294 2.3E-71 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 SUPERFAMILY SSF53623 1 293 1.93E-82 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 TIGRFAM TIGR01499 folC: bifunctional protein FolC 23 415 1.7E-112 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 Gene3D G3DSA:3.90.190.20 295 419 1.4E-16 T 29-03-2018 CFE88_RS02995 977360ac6c74ec91fc099f66c70fa069 421 PIRSF PIRSF001563 1 421 9.3E-127 T 29-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 Pfam PF00171 Aldehyde dehydrogenase family 10 429 9.4E-97 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 237 248 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 SUPERFAMILY SSF53720 7 445 2.36E-124 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 Gene3D G3DSA:3.40.309.10 229 410 1.0E-67 T 29-03-2018 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 209 216 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 Gene3D G3DSA:3.40.605.10 2 228 1.3E-64 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS01740 63cb730f1c30ab2ecc62bb8a757d09cc 459 PIRSF PIRSF036492 1 459 4.0E-187 T 29-03-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 Gene3D G3DSA:3.30.420.40 149 293 1.2E-18 T 29-03-2018 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 157 178 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 134 146 1.8E-49 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 310 1.4E-111 T 29-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 335 62.417 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 Gene3D G3DSA:3.30.420.40 5 148 7.7E-42 T 29-03-2018 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 ProSitePatterns PS01016 Glycoprotease family signature. 100 120 - T 29-03-2018 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 Pfam PF00814 Glycoprotease family 27 310 1.4E-103 T 29-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 SUPERFAMILY SSF53067 6 126 3.72E-31 T 29-03-2018 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 SUPERFAMILY SSF53067 105 316 4.62E-43 T 29-03-2018 CFE88_RS01525 9f7f6f31e326b619a17a99df9e35c42f 340 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 317 2.9E-133 T 29-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 CFE88_RS10975 5e951f653065e015319169f6ba32e034 164 Gene3D G3DSA:3.30.500.20 4 116 1.5E-33 T 29-03-2018 CFE88_RS10975 5e951f653065e015319169f6ba32e034 164 Pfam PF04634 Protein of unknown function, DUF600 8 152 5.1E-42 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS10975 5e951f653065e015319169f6ba32e034 164 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 1 157 2.2E-55 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS10975 5e951f653065e015319169f6ba32e034 164 SUPERFAMILY SSF160424 3 163 1.96E-53 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 Pfam PF01726 LexA DNA binding domain 1 65 2.4E-28 T 29-03-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 TIGRFAM TIGR00498 lexA: repressor LexA 1 205 6.5E-75 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 SUPERFAMILY SSF46785 3 70 1.98E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 121 131 5.6E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 132 143 5.6E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 161 173 5.6E-10 T 29-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 SUPERFAMILY SSF51306 82 204 5.41E-36 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 Pfam PF00717 Peptidase S24-like 125 192 2.5E-17 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 Gene3D G3DSA:2.10.109.10 88 206 2.7E-26 T 29-03-2018 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 Hamap MF_00015 LexA repressor [lexA]. 3 206 35.657 T 29-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CFE88_RS04525 95d4cc1c78b2f35be9a0fdf4394a585c 206 Gene3D G3DSA:1.10.10.10 2 68 1.1E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 SUPERFAMILY SSF52922 474 583 3.77E-17 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 SUPERFAMILY SSF53323 2 221 5.23E-42 T 29-03-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 476 552 1.9E-8 T 29-03-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Gene3D G3DSA:3.40.920.10 2 181 1.4E-40 T 29-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Gene3D G3DSA:3.40.50.970 195 483 1.8E-61 T 29-03-2018 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 210 451 3.6E-62 T 29-03-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 175 2.2E-38 T 29-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 SUPERFAMILY SSF52518 199 459 1.55E-71 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 5 574 5.8E-209 T 29-03-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 CFE88_RS05000 a79ec2bf3930ce302aed153b400bb503 586 Gene3D G3DSA:3.40.50.920 484 581 2.6E-10 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 SMART SM00448 1 111 9.8E-31 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 Pfam PF00072 Response regulator receiver domain 3 111 3.8E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 SUPERFAMILY SSF52172 1 117 4.84E-31 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 SUPERFAMILY SSF46894 124 220 1.19E-20 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 Gene3D G3DSA:1.10.10.10 122 221 9.7E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 1.9E-20 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 Gene3D G3DSA:3.40.50.2300 1 121 6.9E-29 T 29-03-2018 CFE88_RS11130 c95bb484fcb7bec58bffdf154d86cd2b 221 SMART SM00862 146 221 9.7E-15 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS07315 64153984be97929c73afe36f713e32f3 299 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 5 293 2.0E-103 T 29-03-2018 IPR010099 Epimerase family protein SDR39U1 CFE88_RS07315 64153984be97929c73afe36f713e32f3 299 Gene3D G3DSA:3.40.50.720 2 299 8.9E-30 T 29-03-2018 CFE88_RS07315 64153984be97929c73afe36f713e32f3 299 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 1.8E-15 T 29-03-2018 IPR013549 Domain of unknown function DUF1731 CFE88_RS07315 64153984be97929c73afe36f713e32f3 299 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 218 3.4E-20 T 29-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CFE88_RS07315 64153984be97929c73afe36f713e32f3 299 SUPERFAMILY SSF51735 2 298 2.66E-39 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 7.6E-32 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 7.6E-32 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 7.6E-32 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 7.6E-32 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 267 282 7.6E-32 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 3.4E-130 T 29-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 Gene3D G3DSA:3.40.50.720 1 160 1.9E-71 T 29-03-2018 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 PIRSF PIRSF000149 1 336 5.1E-114 T 29-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 103 8.8E-35 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 314 9.0E-60 T 29-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 29-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 SMART SM00846 3 151 2.7E-85 T 29-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 SUPERFAMILY SSF51735 1 150 7.33E-58 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 SUPERFAMILY SSF55347 151 315 5.36E-61 T 29-03-2018 CFE88_RS07295 ca2e593f28674a353a982ee57e53b00f 336 Gene3D G3DSA:3.30.360.10 161 316 4.1E-58 T 29-03-2018 CFE88_RS08225 80ddc076d860bf8c013dce379935bc49 395 Hamap MF_01074 UPF0272 protein . 2 386 40.434 T 29-03-2018 IPR002822 Uncharacterised protein family UPF0272 CFE88_RS08225 80ddc076d860bf8c013dce379935bc49 395 Gene3D G3DSA:3.30.70.1380 242 324 3.3E-29 T 29-03-2018 CFE88_RS08225 80ddc076d860bf8c013dce379935bc49 395 Gene3D G3DSA:3.10.20.300 327 391 2.1E-12 T 29-03-2018 CFE88_RS08225 80ddc076d860bf8c013dce379935bc49 395 Pfam PF01969 Protein of unknown function DUF111 5 376 2.1E-140 T 29-03-2018 IPR035108 LarC/UPF0272 CFE88_RS08225 80ddc076d860bf8c013dce379935bc49 395 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 6 377 4.6E-113 T 29-03-2018 IPR002822 Uncharacterised protein family UPF0272 CFE88_RS04695 2b669691c1022e50eb15238dc3a35797 305 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 37 167 1.4E-14 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS04695 2b669691c1022e50eb15238dc3a35797 305 SUPERFAMILY SSF55846 33 174 5.18E-23 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS04695 2b669691c1022e50eb15238dc3a35797 305 Gene3D G3DSA:3.40.80.10 21 204 2.0E-25 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS04695 2b669691c1022e50eb15238dc3a35797 305 SMART SM00644 23 167 1.3E-8 T 29-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CFE88_RS00885 c45f87885ae96af2a1f7fe485feb89c0 334 Gene3D G3DSA:3.40.50.1980 28 157 5.4E-30 T 29-03-2018 CFE88_RS00885 c45f87885ae96af2a1f7fe485feb89c0 334 Pfam PF01497 Periplasmic binding protein 60 301 1.6E-33 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CFE88_RS00885 c45f87885ae96af2a1f7fe485feb89c0 334 SUPERFAMILY SSF53807 43 321 1.84E-62 T 29-03-2018 CFE88_RS00885 c45f87885ae96af2a1f7fe485feb89c0 334 Gene3D G3DSA:3.40.50.1980 158 330 9.0E-32 T 29-03-2018 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 Gene3D G3DSA:3.40.710.10 24 281 9.6E-37 T 29-03-2018 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 Pfam PF13354 Beta-lactamase enzyme family 46 246 5.3E-36 T 29-03-2018 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 ProSitePatterns PS00146 Beta-lactamase class-A active site. 59 74 - T 29-03-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 97 122 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 57 74 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 159 184 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 133 157 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 26 50 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 195 210 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 PRINTS PR00118 Beta-lactamase class A signature 212 227 1.2E-46 T 29-03-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 CFE88_RS12605 eedeefeb9014e8ea21f9c63262ea433c 281 SUPERFAMILY SSF56601 25 281 8.91E-71 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS05005 df01e87049301f35d419607090ba0b91 264 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 262 5.8E-105 T 29-03-2018 IPR005235 Metallophosphoesterase, YmdB-like CFE88_RS05005 df01e87049301f35d419607090ba0b91 264 Gene3D G3DSA:3.60.21.10 1 264 9.3E-47 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05005 df01e87049301f35d419607090ba0b91 264 PIRSF PIRSF004789 1 263 1.1E-103 T 29-03-2018 IPR005235 Metallophosphoesterase, YmdB-like CFE88_RS05005 df01e87049301f35d419607090ba0b91 264 SUPERFAMILY SSF56300 1 254 3.28E-81 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05005 df01e87049301f35d419607090ba0b91 264 Pfam PF13277 YmdB-like protein 4 253 3.4E-106 T 29-03-2018 IPR005235 Metallophosphoesterase, YmdB-like CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 Gene3D G3DSA:3.20.20.70 4 325 8.2E-81 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 SMART SM01133 21 283 8.0E-27 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 TIGRFAM TIGR01232 lacD: tagatose 1,6-diphosphate aldolase 3 325 3.8E-201 T 29-03-2018 IPR005927 Tagatose 1,6-diphosphate aldolase GO:0009024|GO:0019512 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 Hamap MF_00734 Tagatose 1,6-diphosphate aldolase [lacD]. 1 325 209.254 T 29-03-2018 IPR005927 Tagatose 1,6-diphosphate aldolase GO:0009024|GO:0019512 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 SUPERFAMILY SSF51569 7 322 3.66E-69 T 29-03-2018 CFE88_RS00810 66b50c5928b3bd412b579210d2478e22 325 Pfam PF01791 DeoC/LacD family aldolase 21 282 8.0E-78 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 SMART SM01350 178 466 7.3E-218 T 29-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 65 94 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 355 377 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 3 26 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 248 275 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 118 143 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 5.7E-87 T 29-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 252 264 - T 29-03-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 Gene3D G3DSA:1.10.1040.10 180 433 3.2E-113 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 SUPERFAMILY SSF48179 176 467 1.36E-130 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 SUPERFAMILY SSF51735 3 172 1.12E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 Gene3D G3DSA:1.20.5.320 435 467 1.3E-19 T 29-03-2018 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 PIRSF PIRSF000109 1 468 1.0E-242 T 29-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 Gene3D G3DSA:3.40.50.720 1 179 5.6E-34 T 29-03-2018 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 4 466 1.5E-220 T 29-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 173 6.3E-51 T 29-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 CFE88_RS03725 fc10622c80d9ca692bab92eef3306692 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 465 7.9E-135 T 29-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CFE88_RS04340 c2be96468dea5ae7386a19bb4dfa3b7c 336 Pfam PF01497 Periplasmic binding protein 69 309 3.3E-29 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CFE88_RS04340 c2be96468dea5ae7386a19bb4dfa3b7c 336 SUPERFAMILY SSF53807 57 327 7.46E-51 T 29-03-2018 CFE88_RS04340 c2be96468dea5ae7386a19bb4dfa3b7c 336 Gene3D G3DSA:3.40.50.1980 174 336 1.1E-26 T 29-03-2018 CFE88_RS04340 c2be96468dea5ae7386a19bb4dfa3b7c 336 Gene3D G3DSA:3.40.50.1980 21 173 1.1E-25 T 29-03-2018 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 Gene3D G3DSA:3.65.10.10 218 431 1.2E-43 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 ProSitePatterns PS00104 EPSP synthase signature 1. 89 103 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 428 2.3E-111 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 PIRSF PIRSF000505 1 433 8.7E-105 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 SUPERFAMILY SSF55205 8 427 5.36E-117 T 29-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 425 3.9E-126 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 ProSitePatterns PS00885 EPSP synthase signature 2. 342 360 - T 29-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 431 31.303 T 29-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CFE88_RS03905 1a8e39a102f22aaee9c96d4acae3cb67 433 Gene3D G3DSA:3.65.10.10 22 217 2.6E-41 T 29-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CFE88_RS04535 34eaf7317d22de36b49b6906f15c903a 341 Pfam PF14504 CAP-associated N-terminal 70 205 8.4E-34 T 29-03-2018 IPR029410 CAP-associated domain CFE88_RS04535 34eaf7317d22de36b49b6906f15c903a 341 Gene3D G3DSA:3.40.33.10 211 341 1.8E-12 T 29-03-2018 IPR014044 CAP domain CFE88_RS04535 34eaf7317d22de36b49b6906f15c903a 341 Pfam PF00188 Cysteine-rich secretory protein family 223 339 3.1E-11 T 29-03-2018 IPR014044 CAP domain CFE88_RS04535 34eaf7317d22de36b49b6906f15c903a 341 SUPERFAMILY SSF55797 216 339 4.71E-21 T 29-03-2018 IPR014044 CAP domain CFE88_RS04535 34eaf7317d22de36b49b6906f15c903a 341 Gene3D G3DSA:3.30.1450.10 60 126 9.8E-8 T 29-03-2018 CFE88_RS11790 843d87f60bd28b90f7ea01c7ccd72e90 424 Gene3D G3DSA:1.20.1250.20 214 424 2.2E-28 T 29-03-2018 CFE88_RS11790 843d87f60bd28b90f7ea01c7ccd72e90 424 Pfam PF07690 Major Facilitator Superfamily 16 376 2.8E-61 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS11790 843d87f60bd28b90f7ea01c7ccd72e90 424 PIRSF PIRSF002808 1 421 4.8E-34 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 CFE88_RS11790 843d87f60bd28b90f7ea01c7ccd72e90 424 Gene3D G3DSA:1.20.1250.20 1 204 7.4E-41 T 29-03-2018 CFE88_RS11790 843d87f60bd28b90f7ea01c7ccd72e90 424 SUPERFAMILY SSF103473 4 412 3.27E-84 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00425 4753c78a1d836568855e252fedda969c 229 PIRSF PIRSF009467 3 229 4.0E-72 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CFE88_RS00425 4753c78a1d836568855e252fedda969c 229 Pfam PF01730 UreF 37 185 1.0E-27 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CFE88_RS00425 4753c78a1d836568855e252fedda969c 229 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 229 26.284 T 29-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 Pfam PF01368 DHH family 3 146 8.0E-28 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 SUPERFAMILY SSF64182 2 307 1.7E-80 T 29-03-2018 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 Hamap MF_00207 Probable manganese-dependent inorganic pyrophosphatase [ppaC]. 3 309 45.317 T 29-03-2018 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable GO:0004427 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 SMART SM01131 181 307 1.6E-51 T 29-03-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 Pfam PF02833 DHHA2 domain 183 306 2.7E-19 T 29-03-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS01745 ce0464a400dd19fd314dde16f76c6979 309 Gene3D G3DSA:3.90.1640.10 1 188 2.1E-63 T 29-03-2018 CFE88_RS08240 a50533a6120c4002d21256818fa7a7cb 158 Gene3D G3DSA:3.40.630.30 1 158 4.1E-33 T 29-03-2018 CFE88_RS08240 a50533a6120c4002d21256818fa7a7cb 158 SUPERFAMILY SSF55729 1 156 1.86E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08240 a50533a6120c4002d21256818fa7a7cb 158 Pfam PF00583 Acetyltransferase (GNAT) family 52 134 3.1E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS07995 110840c69ddc926fd11e5517ba0e6948 409 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 407 5.6E-48 T 29-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 CFE88_RS07995 110840c69ddc926fd11e5517ba0e6948 409 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 79 8.1E-18 T 29-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 CFE88_RS10460 68855595876a4053abae4f7340619a8c 191 SUPERFAMILY SSF101473 2 188 4.45E-50 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS10460 68855595876a4053abae4f7340619a8c 191 Pfam PF02734 DAK2 domain 30 187 9.4E-43 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS10460 68855595876a4053abae4f7340619a8c 191 SMART SM01120 30 189 2.4E-58 T 29-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS10460 68855595876a4053abae4f7340619a8c 191 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 7 188 4.5E-70 T 29-03-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 Gene3D G3DSA:3.80.30.20 210 445 1.2E-54 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 70 503 2.6E-194 T 29-03-2018 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 Pfam PF04055 Radical SAM superfamily 217 387 3.1E-34 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 69 501 1.3E-159 T 29-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 SMART SM00729 213 431 1.2E-63 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 Pfam PF01938 TRAM domain 443 503 1.7E-13 T 29-03-2018 IPR002792 TRAM domain CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 217 237 - T 29-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 68 504 70.411 T 29-03-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 SUPERFAMILY SSF102114 200 433 5.23E-62 T 29-03-2018 CFE88_RS04980 69908e75c8cdf4fffffddabaef6b0410 514 Pfam PF00919 Uncharacterized protein family UPF0004 70 170 3.7E-30 T 29-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CFE88_RS03660 2ec3386d1d9feed040def2b8c5540dfc 129 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 1 129 20.215 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 CFE88_RS03660 2ec3386d1d9feed040def2b8c5540dfc 129 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 3 128 3.2E-39 T 29-03-2018 IPR011605 NusB antitermination factor GO:0006353 CFE88_RS03660 2ec3386d1d9feed040def2b8c5540dfc 129 Pfam PF01029 NusB family 5 128 3.2E-35 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS03660 2ec3386d1d9feed040def2b8c5540dfc 129 Gene3D G3DSA:1.10.940.10 1 129 7.4E-39 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS03660 2ec3386d1d9feed040def2b8c5540dfc 129 SUPERFAMILY SSF48013 2 127 1.57E-39 T 29-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CFE88_RS03395 96f95aa6da71b04b0211a14836f1eaee 315 Gene3D G3DSA:3.40.50.300 106 312 4.4E-31 T 29-03-2018 CFE88_RS03395 96f95aa6da71b04b0211a14836f1eaee 315 SUPERFAMILY SSF52540 61 287 5.87E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03395 96f95aa6da71b04b0211a14836f1eaee 315 Pfam PF02562 PhoH-like protein 109 312 1.0E-93 T 29-03-2018 IPR003714 PhoH-like protein GO:0005524 CFE88_RS03395 96f95aa6da71b04b0211a14836f1eaee 315 SUPERFAMILY SSF54791 12 75 1.01E-5 T 29-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 Gene3D G3DSA:3.50.50.60 200 321 8.9E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 291 8.0E-97 T 29-03-2018 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 1.0E-17 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 211 227 1.0E-17 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 287 305 1.0E-17 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 119 127 1.0E-17 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 154 178 1.0E-17 T 29-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.2E-12 T 29-03-2018 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 1.2E-12 T 29-03-2018 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 1.2E-12 T 29-03-2018 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 1.2E-12 T 29-03-2018 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 SUPERFAMILY SSF51905 7 299 2.24E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 Gene3D G3DSA:3.50.50.60 2 143 3.6E-17 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 TIGRFAM TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family 6 320 1.6E-136 T 29-03-2018 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA CFE88_RS03840 98b5d11c0e5803ce3d5827b0aa0ab15d 328 Gene3D G3DSA:3.50.50.60 144 199 1.2E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 SUPERFAMILY SSF90123 22 329 1.57E-37 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 SUPERFAMILY SSF52540 341 549 6.2E-55 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 Gene3D G3DSA:1.20.1560.10 20 326 2.4E-31 T 29-03-2018 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 Gene3D G3DSA:3.40.50.300 327 556 1.1E-49 T 29-03-2018 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 Pfam PF00005 ABC transporter 360 498 2.2E-27 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 Pfam PF00664 ABC transporter transmembrane region 37 283 1.1E-9 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS07815 d8b1336ff2aca3615129c830d373254f 564 SMART SM00382 369 545 6.8E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04920 6c787ab0324272925874556cde86d101 159 Gene3D G3DSA:3.40.30.10 2 159 2.7E-48 T 29-03-2018 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 PIRSF PIRSF000303 1 159 1.9E-68 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 29-03-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 PRINTS PR01011 Glutathione peroxidase family signature 57 73 3.6E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 PRINTS PR01011 Glutathione peroxidase family signature 22 39 3.6E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 PRINTS PR01011 Glutathione peroxidase family signature 122 131 3.6E-20 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 Pfam PF00255 Glutathione peroxidase 4 110 3.0E-40 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS04920 6c787ab0324272925874556cde86d101 159 SUPERFAMILY SSF52833 3 158 6.64E-61 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS11050 47e86e8b59b978583764739f67854950 93 Gene3D G3DSA:3.40.1580.10 2 93 6.3E-8 T 29-03-2018 CFE88_RS11050 47e86e8b59b978583764739f67854950 93 SUPERFAMILY SSF160631 12 90 2.09E-5 T 29-03-2018 CFE88_RS00890 b7041bf3e41dd6cb2571fd37c582bab8 343 Pfam PF01032 FecCD transport family 30 338 2.5E-93 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CFE88_RS00890 b7041bf3e41dd6cb2571fd37c582bab8 343 Gene3D G3DSA:1.10.3470.10 15 342 1.1E-67 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS00890 b7041bf3e41dd6cb2571fd37c582bab8 343 SUPERFAMILY SSF81345 14 338 6.93E-82 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS00385 239ffb794a2cde7c6ebab5e31b42b3a5 465 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 6 461 2.9E-129 T 29-03-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 CFE88_RS00385 239ffb794a2cde7c6ebab5e31b42b3a5 465 Pfam PF03553 Na+/H+ antiporter family 160 457 9.0E-63 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 65 7.9E-16 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 2.1E-51 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 2.1E-51 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 2.1E-51 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 2.1E-51 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 2.1E-51 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 34.642 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 SUPERFAMILY SSF52374 3 159 9.78E-43 T 29-03-2018 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 13 69 1.0E-4 T 29-03-2018 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 159 2.1E-60 T 29-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 Pfam PF01467 Cytidylyltransferase-like 8 135 9.6E-18 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CFE88_RS05715 0cf9dde5e96ecda2bb1a8cf8d909e1da 161 Gene3D G3DSA:3.40.50.620 1 160 1.8E-35 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS09560 1e55813e773ca7ca8d79c061c91acfe6 280 SMART SM00382 30 215 4.5E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS09560 1e55813e773ca7ca8d79c061c91acfe6 280 Pfam PF00005 ABC transporter 21 160 3.7E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS09560 1e55813e773ca7ca8d79c061c91acfe6 280 SUPERFAMILY SSF52540 3 224 3.7E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09560 1e55813e773ca7ca8d79c061c91acfe6 280 Gene3D G3DSA:3.40.50.300 1 272 3.7E-44 T 29-03-2018 CFE88_RS05710 3335ea2760415bee537af2013d1971a2 377 SUPERFAMILY SSF52374 145 220 7.7E-18 T 29-03-2018 CFE88_RS05710 3335ea2760415bee537af2013d1971a2 377 SUPERFAMILY SSF52374 2 118 7.7E-18 T 29-03-2018 CFE88_RS05710 3335ea2760415bee537af2013d1971a2 377 Hamap MF_01539 UPF0348 protein . 2 376 35.331 T 29-03-2018 IPR008513 Uncharacterised protein family UPF0348 CFE88_RS05710 3335ea2760415bee537af2013d1971a2 377 Gene3D G3DSA:3.40.50.620 1 230 7.2E-45 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05710 3335ea2760415bee537af2013d1971a2 377 Pfam PF05636 HIGH Nucleotidyl Transferase 1 368 4.7E-115 T 29-03-2018 IPR008513 Uncharacterised protein family UPF0348 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 PIRSF PIRSF005719 1 1184 0.0 T 29-03-2018 IPR024704 Structural maintenance of chromosomes protein CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 SUPERFAMILY SSF75553 486 688 2.88E-54 T 29-03-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Pfam PF06470 SMC proteins Flexible Hinge Domain 520 639 1.2E-31 T 29-03-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 SUPERFAMILY SSF52540 3 215 4.5E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 SUPERFAMILY SSF52540 1076 1162 4.5E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:3.40.50.300 858 1189 6.5E-30 T 29-03-2018 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Hamap MF_01894 Chromosome partition protein Smc [smc]. 2 1179 22.575 T 29-03-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:1.20.5.170 410 500 3.9E-5 T 29-03-2018 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 SMART SM00968 520 639 1.2E-40 T 29-03-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:1.10.287.620 666 847 1.4E-5 T 29-03-2018 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:1.20.58.60 177 327 7.0E-4 T 29-03-2018 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:1.10.287.510 328 409 5.5E-5 T 29-03-2018 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 3 1177 0.0 T 29-03-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1170 9.1E-56 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS05275 6a7d5195407507658d8a81c760302e4b 1189 Gene3D G3DSA:3.40.50.300 1 176 6.2E-39 T 29-03-2018 CFE88_RS03435 088e8dd6e7613f4c48582120b06a3b4e 272 Pfam PF03618 Kinase/pyrophosphorylase 6 263 7.2E-93 T 29-03-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CFE88_RS03435 088e8dd6e7613f4c48582120b06a3b4e 272 Gene3D G3DSA:3.40.50.300 17 272 3.5E-6 T 29-03-2018 CFE88_RS03435 088e8dd6e7613f4c48582120b06a3b4e 272 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 268 57.773 T 29-03-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PIRSF PIRSF000723 1 310 2.0E-123 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 SUPERFAMILY SSF53633 1 308 3.93E-78 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 38 57 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 209 224 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 71 89 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 106 125 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 264 279 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 155 174 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 PRINTS PR01469 Bacterial carbamate kinase signature 178 196 5.6E-59 T 29-03-2018 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 Pfam PF00696 Amino acid kinase family 3 283 1.5E-25 T 29-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 TIGRFAM TIGR00746 arcC: carbamate kinase 3 310 1.2E-112 T 29-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CFE88_RS10420 733c24cec6c1e99cd4853b8369c80cd9 310 Gene3D G3DSA:3.40.1160.10 1 310 2.5E-53 T 29-03-2018 CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 SUPERFAMILY SSF56300 1 315 1.23E-56 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 262 349 2.6E-9 T 29-03-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 Gene3D G3DSA:3.60.21.10 68 264 8.0E-26 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 Gene3D G3DSA:3.60.21.10 1 67 4.5E-14 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 Pfam PF00149 Calcineurin-like phosphoesterase 1 214 2.2E-18 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CFE88_RS04495 169e38028db12fa80c5af4861dd0e9fa 374 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 241 4.7E-55 T 29-03-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 CFE88_RS02895 5cbaab995d4c482d1c07f96de43e87d7 306 Gene3D G3DSA:3.40.50.300 103 296 1.3E-16 T 29-03-2018 CFE88_RS02895 5cbaab995d4c482d1c07f96de43e87d7 306 Pfam PF01695 IstB-like ATP binding protein 155 265 3.7E-10 T 29-03-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CFE88_RS02895 5cbaab995d4c482d1c07f96de43e87d7 306 SUPERFAMILY SSF52540 125 270 4.69E-20 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS02895 5cbaab995d4c482d1c07f96de43e87d7 306 Pfam PF07319 Primosomal protein DnaI N-terminus 1 94 7.6E-25 T 29-03-2018 IPR009928 Primosomal DnaI, N-terminal CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 SUPERFAMILY SSF52161 5 143 4.06E-55 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.1E-59 T 29-03-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 144 26.922 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 Gene3D G3DSA:3.90.1180.10 1 145 1.2E-57 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 Pfam PF00572 Ribosomal protein L13 15 139 4.6E-53 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 29-03-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 CFE88_RS00775 d53e844a990ab78a766a2ba1a65f6a91 145 PIRSF PIRSF002181 1 143 1.8E-48 T 29-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 SUPERFAMILY SSF47413 2 59 3.75E-16 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 Pfam PF13377 Periplasmic binding protein-like domain 170 307 7.2E-12 T 29-03-2018 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 SMART SM00354 1 70 2.2E-34 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 Gene3D G3DSA:3.40.50.2300 172 306 3.3E-19 T 29-03-2018 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.8E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.8E-5 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 SUPERFAMILY SSF53822 57 316 4.54E-55 T 29-03-2018 IPR028082 Periplasmic binding protein-like I CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 Gene3D G3DSA:1.10.260.40 3 53 6.7E-21 T 29-03-2018 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 29-03-2018 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 4.3E-19 T 29-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CFE88_RS01565 672fa2a18cf0e2f2b24fd496eb21f9d9 317 Gene3D G3DSA:3.40.50.2300 54 171 9.8E-28 T 29-03-2018 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 Gene3D G3DSA:3.40.630.20 1 212 4.5E-55 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 67 83 - T 29-03-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 128 142 - T 29-03-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 SUPERFAMILY SSF53182 1 202 5.89E-61 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 130 146 6.7E-39 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 3 26 6.7E-39 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 60 72 6.7E-39 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 78 98 6.7E-39 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 160 172 6.7E-39 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 208 1.0E-62 T 29-03-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 PIRSF PIRSF015592 1 210 2.1E-70 T 29-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 CFE88_RS10580 1b698f33ffde78b65ffe277297d815e4 212 Pfam PF01470 Pyroglutamyl peptidase 1 198 8.0E-80 T 29-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CFE88_RS03380 bd6f9c368078b2f49af157cbc173d215 236 SUPERFAMILY SSF141322 172 234 3.27E-5 T 29-03-2018 CFE88_RS03380 bd6f9c368078b2f49af157cbc173d215 236 Gene3D G3DSA:2.40.50.140 172 236 7.4E-8 T 29-03-2018 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 SUPERFAMILY SSF100879 240 340 2.67E-25 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Hamap MF_01113 DNA polymerase IV [dinB]. 3 352 37.51 T 29-03-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Pfam PF00817 impB/mucB/samB family 9 155 5.4E-53 T 29-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Gene3D G3DSA:3.30.1490.100 245 353 3.7E-27 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 SUPERFAMILY SSF56672 3 236 4.0E-91 T 29-03-2018 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Gene3D G3DSA:1.10.150.20 173 244 2.7E-16 T 29-03-2018 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Pfam PF11799 impB/mucB/samB family C-terminal domain 236 344 4.5E-21 T 29-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Gene3D G3DSA:3.30.70.270 43 120 1.0E-27 T 29-03-2018 CFE88_RS01855 2099978e07f6c69cda18cb2fc157ccc6 356 Gene3D G3DSA:3.30.70.270 121 172 2.8E-18 T 29-03-2018 CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 Gene3D G3DSA:1.10.10.10 140 239 7.3E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 129 236 2.5E-28 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 8 116 2.8E-19 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 Gene3D G3DSA:1.10.10.10 1 126 0.0031 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 SUPERFAMILY SSF46785 3 115 2.18E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00400 27f03d5c0ededc4f90c19a8a3c669dbd 242 SUPERFAMILY SSF46785 123 238 2.12E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 SUPERFAMILY SSF56281 467 723 1.12E-43 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 Gene3D G3DSA:3.60.15.10 464 724 5.3E-25 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 203 370 6.5E-27 T 29-03-2018 IPR004477 ComEC/Rec2-related protein CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 178 709 1.0E-82 T 29-03-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 Pfam PF03772 Competence protein 182 437 1.4E-44 T 29-03-2018 IPR004477 ComEC/Rec2-related protein CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 SMART SM00849 475 680 5.9E-7 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS03310 c48d1b2afdaaf9531a75b2acc73b50db 738 Pfam PF00753 Metallo-beta-lactamase superfamily 473 677 7.0E-11 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS04515 69d0052c27b0654461fa8b8a3d60a538 78 SUPERFAMILY SSF158221 7 43 1.23E-12 T 29-03-2018 CFE88_RS04515 69d0052c27b0654461fa8b8a3d60a538 78 Gene3D G3DSA:1.10.287.540 5 57 5.8E-24 T 29-03-2018 CFE88_RS04515 69d0052c27b0654461fa8b8a3d60a538 78 Pfam PF05979 Bacterial protein of unknown function (DUF896) 8 69 9.3E-32 T 29-03-2018 IPR009242 Protein of unknown function DUF896 CFE88_RS04515 69d0052c27b0654461fa8b8a3d60a538 78 Hamap MF_01103 UPF0291 protein . 1 61 16.944 T 29-03-2018 IPR009242 Protein of unknown function DUF896 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 449 467 - T 29-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 PIRSF PIRSF000732 1 572 2.4E-220 T 29-03-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Pfam PF00391 PEP-utilising enzyme, mobile domain 155 227 1.5E-22 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 SUPERFAMILY SSF47831 34 145 2.09E-34 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 568 2.0E-241 T 29-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Gene3D G3DSA:3.20.20.60 257 572 2.0E-102 T 29-03-2018 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 540 6.6E-129 T 29-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 SUPERFAMILY SSF51621 252 551 1.75E-111 T 29-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Gene3D G3DSA:1.10.274.10 29 136 1.5E-35 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 128 2.2E-31 T 29-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 186 197 - T 29-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 449 464 5.5E-32 T 29-03-2018 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 502 514 5.5E-32 T 29-03-2018 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 295 314 5.5E-32 T 29-03-2018 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 466 481 5.5E-32 T 29-03-2018 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 Gene3D G3DSA:3.50.30.10 137 256 6.5E-29 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS05930 b5c328234e0aad6787e9744f940f0853 572 SUPERFAMILY SSF52009 127 249 9.68E-36 T 29-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CFE88_RS10035 d2ae4290da8c25df41d564042419893e 261 Pfam PF04507 Csa1 family 1 257 4.5E-136 T 29-03-2018 IPR007595 Csa1 family CFE88_RS10035 d2ae4290da8c25df41d564042419893e 261 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 255 6.5E-111 T 29-03-2018 IPR007595 Csa1 family CFE88_RS06165 2d44a379cfff0c64b45caaaa0ab2e8d9 71 Pfam PF05154 TM2 domain 1 51 2.7E-15 T 29-03-2018 IPR007829 TM2 domain CFE88_RS03915 b3ed8d94982081d6bf6310ffdbc38766 187 SMART SM00914 136 172 3.7E-7 T 29-03-2018 IPR014957 IDEAL domain CFE88_RS03915 b3ed8d94982081d6bf6310ffdbc38766 187 PIRSF PIRSF007165 1 180 4.9E-65 T 29-03-2018 IPR011188 Uncharacterised protein family UPF0302 CFE88_RS03915 b3ed8d94982081d6bf6310ffdbc38766 187 Pfam PF08858 IDEAL domain 137 172 1.3E-7 T 29-03-2018 IPR014957 IDEAL domain CFE88_RS03915 b3ed8d94982081d6bf6310ffdbc38766 187 Pfam PF08864 UPF0302 domain 9 108 8.3E-29 T 29-03-2018 IPR014963 Uncharacterised domain UPF0302, N-terminal CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 29-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 SMART SM00919 160 384 1.2E-126 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 Gene3D G3DSA:3.40.50.720 158 405 1.2E-83 T 29-03-2018 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 Pfam PF03949 Malic enzyme, NAD binding domain 162 383 2.5E-24 T 29-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 SUPERFAMILY SSF53223 7 158 7.19E-55 T 29-03-2018 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 SMART SM01274 15 148 6.1E-80 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 PIRSF PIRSF000106 29 407 1.9E-86 T 29-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 3.3E-29 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 SUPERFAMILY SSF51735 160 401 6.09E-82 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS02810 95ad4c09a11d17cc907b69bcdd0f2c7c 409 Gene3D G3DSA:3.40.50.10380 3 157 6.8E-42 T 29-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 122 240 6.0E-44 T 29-03-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 Hamap MF_01499 Diadenylate cyclase [dacA]. 8 258 32.287 T 29-03-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 Gene3D G3DSA:3.40.1700.10 115 242 9.1E-37 T 29-03-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 PIRSF PIRSF004793 6 265 2.7E-90 T 29-03-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 7 256 5.1E-87 T 29-03-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 CFE88_RS00995 ae77402cd710da4d8e885bbeb83180be 269 SUPERFAMILY SSF143597 44 244 2.48E-68 T 29-03-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 SUPERFAMILY SSF46894 129 200 1.84E-15 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 2.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 2.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 2.7E-9 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 Gene3D G3DSA:1.10.10.10 138 200 1.7E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 SMART SM00448 2 115 5.1E-18 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 Pfam PF00072 Response regulator receiver domain 5 115 1.4E-22 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 191 1.3E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 Gene3D G3DSA:3.40.50.2300 1 137 2.1E-26 T 29-03-2018 CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 SUPERFAMILY SSF52172 1 130 2.13E-25 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS04620 c53afcb594013b8698313e298bc68b7a 200 SMART SM00421 137 194 6.4E-12 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 Gene3D G3DSA:3.30.390.30 341 454 1.3E-26 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 51 66 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 403 418 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 338 359 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 425 445 4.6E-52 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 Gene3D G3DSA:3.40.50.720 160 316 1.1E-34 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PIRSF PIRSF000350 4 450 3.1E-84 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 52 62 - T 29-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 310 2.7E-59 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 342 449 1.7E-20 T 29-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 SUPERFAMILY SSF51905 13 314 2.04E-50 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 4.7E-30 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 18 37 4.7E-30 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 4.7E-30 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 4.7E-30 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 4.7E-30 T 29-03-2018 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 SUPERFAMILY SSF55424 338 451 2.06E-27 T 29-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 CFE88_RS08275 16d233087752767cd96a050dd80071e0 455 Gene3D G3DSA:3.50.50.60 15 159 1.1E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 Gene3D G3DSA:3.30.70.890 181 306 6.9E-29 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 PRINTS PR00959 Mevalonate kinase family signature 91 113 5.8E-17 T 29-03-2018 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 PRINTS PR00959 Mevalonate kinase family signature 262 279 5.8E-17 T 29-03-2018 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 PRINTS PR00959 Mevalonate kinase family signature 9 33 5.8E-17 T 29-03-2018 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 PRINTS PR00959 Mevalonate kinase family signature 134 153 5.8E-17 T 29-03-2018 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 Pfam PF00288 GHMP kinases N terminal domain 87 148 1.2E-13 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 Pfam PF08544 GHMP kinases C terminal 217 295 5.3E-9 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 SUPERFAMILY SSF55060 170 304 3.84E-28 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 SUPERFAMILY SSF54211 9 186 6.6E-38 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 TIGRFAM TIGR00549 mevalon_kin: mevalonate kinase 10 277 1.2E-82 T 29-03-2018 IPR006205 Mevalonate kinase GO:0004496|GO:0005524|GO:0005737|GO:0008299 KEGG: 00900+2.7.1.36|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-2426168 CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 Gene3D G3DSA:3.30.230.10 67 180 1.8E-24 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 Gene3D G3DSA:3.30.230.10 1 66 5.5E-5 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08295 687aa4552e89e4773f8c0a16ee1e20e0 306 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 93 104 - T 29-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 CFE88_RS06340 afca3510e01ffd694f8f675bc43ec21f 207 Pfam PF04276 Protein of unknown function (DUF443) 10 203 3.3E-59 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06340 afca3510e01ffd694f8f675bc43ec21f 207 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 4 204 8.8E-53 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 Pfam PF00364 Biotin-requiring enzyme 83 155 2.9E-23 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 SUPERFAMILY SSF51230 80 156 1.44E-22 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 157 3.2E-51 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 Gene3D G3DSA:2.40.50.100 72 157 7.3E-17 T 29-03-2018 CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 86 99 5.6E-16 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 118 131 5.6E-16 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CFE88_RS03645 6bf88da9a02e6446ec1f24eeb8faecba 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 103 117 5.6E-16 T 29-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CFE88_RS08835 50f601938ac9934d4a772eba20115f15 87 Gene3D G3DSA:3.10.290.10 1 87 3.7E-16 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS08835 50f601938ac9934d4a772eba20115f15 87 SMART SM00363 1 63 1.6E-7 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS08835 50f601938ac9934d4a772eba20115f15 87 PIRSF PIRSF038881 1 87 5.0E-33 T 29-03-2018 IPR025490 RNA-binding protein, HP1423 type CFE88_RS08835 50f601938ac9934d4a772eba20115f15 87 Pfam PF01479 S4 domain 1 47 1.9E-10 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS08835 50f601938ac9934d4a772eba20115f15 87 SUPERFAMILY SSF55174 1 71 2.22E-18 T 29-03-2018 CFE88_RS07805 b4603b5d75c406dfad26e9529fd4dd0d 147 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 29-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CFE88_RS07805 b4603b5d75c406dfad26e9529fd4dd0d 147 Gene3D G3DSA:1.10.10.10 2 143 1.1E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07805 b4603b5d75c406dfad26e9529fd4dd0d 147 SUPERFAMILY SSF46785 6 139 2.35E-33 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07805 b4603b5d75c406dfad26e9529fd4dd0d 147 Pfam PF01047 MarR family 36 94 2.0E-14 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS07805 b4603b5d75c406dfad26e9529fd4dd0d 147 SMART SM00347 29 127 1.3E-18 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Gene3D G3DSA:3.40.50.970 344 543 6.9E-42 T 29-03-2018 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Gene3D G3DSA:3.40.50.1220 192 343 1.5E-31 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 322 5.1E-32 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 7.3E-37 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 419 438 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Gene3D G3DSA:3.40.50.970 1 191 9.4E-39 T 29-03-2018 CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 SUPERFAMILY SSF52518 2 170 8.83E-40 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 SUPERFAMILY SSF52467 185 355 5.27E-42 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 SUPERFAMILY SSF52518 359 540 8.11E-62 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS11570 8222801648b426ae9c7b0ca67e5edfbf 579 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 528 1.4E-40 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS12560 788d2f661047acdc25f0a6dd82a71b76 237 Gene3D G3DSA:1.10.10.60 1 64 1.3E-5 T 29-03-2018 CFE88_RS12560 788d2f661047acdc25f0a6dd82a71b76 237 Pfam PF04394 Protein of unknown function, DUF536 97 150 6.3E-16 T 29-03-2018 IPR007489 Domain of unknown function DUF536 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 Pfam PF14306 PUA-like domain 12 170 2.7E-57 T 29-03-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 SUPERFAMILY SSF52374 176 387 8.0E-86 T 29-03-2018 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 35 391 50.142 T 29-03-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 Pfam PF01747 ATP-sulfurylase 178 387 8.3E-95 T 29-03-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 Gene3D G3DSA:3.40.50.620 187 387 1.4E-91 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 SUPERFAMILY SSF88697 12 174 5.67E-55 T 29-03-2018 IPR015947 PUA-like domain CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 14 387 1.6E-143 T 29-03-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CFE88_RS11240 10921de8a1683b23640a5b0dc1a1e441 392 Gene3D G3DSA:3.10.400.10 11 186 6.0E-68 T 29-03-2018 CFE88_RS00895 1e12bfab3ad065507a80ea448aa0da22 321 Pfam PF01032 FecCD transport family 16 320 7.9E-85 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CFE88_RS00895 1e12bfab3ad065507a80ea448aa0da22 321 Gene3D G3DSA:1.10.3470.10 1 321 1.2E-59 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS00895 1e12bfab3ad065507a80ea448aa0da22 321 SUPERFAMILY SSF81345 6 320 7.85E-76 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS02710 21e62e30523e2fae24c89da9d1028545 146 Gene3D G3DSA:3.30.300.20 3 146 6.1E-26 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS02710 21e62e30523e2fae24c89da9d1028545 146 SUPERFAMILY SSF82784 2 142 9.03E-30 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS02710 21e62e30523e2fae24c89da9d1028545 146 TIGRFAM TIGR03563 perox_SACOL1771: peroxiredoxin, SACOL1771 subfamily 4 141 1.4E-56 T 29-03-2018 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes CFE88_RS02710 21e62e30523e2fae24c89da9d1028545 146 Pfam PF02566 OsmC-like protein 39 142 5.3E-17 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SUPERFAMILY SSF47384 223 303 4.32E-12 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 Pfam PF00672 HAMP domain 187 233 3.2E-10 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SMART SM00388 239 304 3.0E-6 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 449 4.9E-14 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 303 8.3E-8 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 Gene3D G3DSA:1.10.287.130 229 300 1.5E-8 T 29-03-2018 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SUPERFAMILY SSF55874 312 448 2.05E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 Gene3D G3DSA:3.30.565.10 310 451 9.5E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SMART SM00304 186 238 1.3E-9 T 29-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SUPERFAMILY SSF158472 186 235 1.15E-10 T 29-03-2018 CFE88_RS00060 113ff489d0c49a80fb37f5cb6361fd47 451 SMART SM00387 348 451 1.4E-20 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Gene3D G3DSA:3.40.50.20 1 139 9.9E-43 T 29-03-2018 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 341 8.1E-110 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 284 312 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 PIRSF PIRSF039102 1 350 7.8E-114 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Gene3D G3DSA:3.30.1490.20 145 204 3.8E-19 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 SUPERFAMILY SSF52440 3 128 3.17E-35 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 SUPERFAMILY SSF56059 129 345 3.91E-57 T 29-03-2018 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Pfam PF01820 D-ala D-ala ligase N-terminus 5 118 7.9E-32 T 29-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Gene3D G3DSA:3.30.470.20 205 351 5.9E-39 T 29-03-2018 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Pfam PF07478 D-ala D-ala ligase C-terminus 136 339 2.8E-76 T 29-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 342 41.194 T 29-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01355 7c245ed5fff0fb34b9759d23efd292e2 357 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 96 107 - T 29-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 9.8E-8 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 9.8E-8 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 9.8E-8 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 Gene3D G3DSA:1.10.10.10 1 50 7.3E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 Pfam PF01037 Lrp/AsnC ligand binding domain 67 133 9.6E-11 T 29-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 Gene3D G3DSA:3.30.70.920 51 136 5.0E-18 T 29-03-2018 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 SUPERFAMILY SSF54909 63 136 1.5E-14 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 SMART SM00344 1 107 5.4E-28 T 29-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 Pfam PF13404 AsnC-type helix-turn-helix domain 1 41 4.4E-11 T 29-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 CFE88_RS10620 f0fa429144aa2392415af7546018638c 136 SUPERFAMILY SSF46785 1 61 2.42E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 SUPERFAMILY SSF53335 15 255 1.63E-47 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 274 2.1E-77 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 Gene3D G3DSA:1.10.8.10 6 80 1.8E-14 T 29-03-2018 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 Pfam PF05175 Methyltransferase small domain 100 191 5.2E-12 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 2 278 37.215 T 29-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 277 1.5E-62 T 29-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 Gene3D G3DSA:3.40.50.150 81 277 3.7E-40 T 29-03-2018 CFE88_RS01185 a8e16d983620b47b27f63c1b613989f5 278 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 181 187 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CFE88_RS04880 9c776adb07916476fbdad91cd3bfdce4 72 Gene3D G3DSA:1.10.10.10 4 70 0.0017 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04880 9c776adb07916476fbdad91cd3bfdce4 72 Pfam PF05339 Protein of unknown function (DUF739) 1 68 6.4E-32 T 29-03-2018 IPR008003 Protein of unknown function DUF739 CFE88_RS01960 b6bf0af516bc5b2962f32b41611064bf 269 Pfam PF00912 Transglycosylase 77 250 2.4E-53 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS01960 b6bf0af516bc5b2962f32b41611064bf 269 Gene3D G3DSA:1.10.3810.10 63 268 9.0E-62 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS01960 b6bf0af516bc5b2962f32b41611064bf 269 SUPERFAMILY SSF53955 78 265 4.22E-56 T 29-03-2018 IPR023346 Lysozyme-like domain CFE88_RS01960 b6bf0af516bc5b2962f32b41611064bf 269 Hamap MF_01434 Monofunctional glycosyltransferase [mgt]. 1 269 59.614 T 29-03-2018 IPR022978 Monofunctional glycosyl transferase GO:0016757 CFE88_RS12180 94255b5b7f80256f22e7600e1c080564 239 Pfam PF01903 CbiX 144 230 1.3E-5 T 29-03-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CFE88_RS12180 94255b5b7f80256f22e7600e1c080564 239 Pfam PF01903 CbiX 9 112 7.4E-25 T 29-03-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CFE88_RS12180 94255b5b7f80256f22e7600e1c080564 239 Gene3D G3DSA:3.40.50.1400 114 225 1.5E-8 T 29-03-2018 CFE88_RS12180 94255b5b7f80256f22e7600e1c080564 239 SUPERFAMILY SSF53800 5 233 8.22E-25 T 29-03-2018 CFE88_RS12180 94255b5b7f80256f22e7600e1c080564 239 Gene3D G3DSA:3.40.50.1400 2 113 2.0E-18 T 29-03-2018 CFE88_RS02670 7efbe76e590038cce4aa410f1f7afb18 301 Gene3D G3DSA:1.10.3810.10 74 288 2.9E-60 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS02670 7efbe76e590038cce4aa410f1f7afb18 301 Pfam PF00912 Transglycosylase 82 271 4.1E-54 T 29-03-2018 IPR001264 Glycosyl transferase, family 51 CFE88_RS02670 7efbe76e590038cce4aa410f1f7afb18 301 SUPERFAMILY SSF53955 78 295 7.03E-58 T 29-03-2018 IPR023346 Lysozyme-like domain CFE88_RS01470 6d869230cb1ed7ea93c3d6dd5ae5776e 189 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 3 189 38.519 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CFE88_RS01470 6d869230cb1ed7ea93c3d6dd5ae5776e 189 Gene3D G3DSA:3.20.19.10 1 170 1.4E-44 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS01470 6d869230cb1ed7ea93c3d6dd5ae5776e 189 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 4 182 3.8E-64 T 29-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CFE88_RS01470 6d869230cb1ed7ea93c3d6dd5ae5776e 189 Pfam PF00694 Aconitase C-terminal domain 6 125 5.7E-32 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS01470 6d869230cb1ed7ea93c3d6dd5ae5776e 189 SUPERFAMILY SSF52016 4 186 2.75E-54 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS11870 02b5d61885fcb4f1d85832cb509fcff2 632 SUPERFAMILY SSF53448 9 223 2.16E-40 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11870 02b5d61885fcb4f1d85832cb509fcff2 632 Pfam PF00535 Glycosyl transferase family 2 11 135 5.3E-28 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CFE88_RS11870 02b5d61885fcb4f1d85832cb509fcff2 632 Gene3D G3DSA:3.90.550.10 6 297 6.7E-37 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 Pfam PF07690 Major Facilitator Superfamily 25 417 3.1E-48 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 ProSitePatterns PS00216 Sugar transport proteins signature 1. 74 90 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 SUPERFAMILY SSF103473 478 509 2.62E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 SUPERFAMILY SSF103473 257 427 2.62E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 SUPERFAMILY SSF103473 11 204 2.62E-68 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 Gene3D G3DSA:1.20.1250.20 9 209 8.5E-39 T 29-03-2018 CFE88_RS12575 fbcf0b7cff8f320cdfb797f17ce017be 514 Gene3D G3DSA:1.20.1250.20 268 514 1.4E-26 T 29-03-2018 CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 Gene3D G3DSA:3.40.50.300 263 430 4.4E-27 T 29-03-2018 CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 SMART SM00490 563 660 3.2E-10 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 801 25.373 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 SUPERFAMILY SSF52540 529 705 3.35E-34 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 TIGRFAM TIGR00595 priA: primosomal protein N' 289 798 1.8E-216 T 29-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 Pfam PF00271 Helicase conserved C-terminal domain 563 659 2.9E-8 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 SMART SM00487 261 452 8.0E-23 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 SUPERFAMILY SSF52540 262 446 1.58E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 Gene3D G3DSA:3.40.50.300 469 727 4.6E-22 T 29-03-2018 CFE88_RS05380 7d1e15e5b9aa6732bf24136e772b6caa 802 Pfam PF04851 Type III restriction enzyme, res subunit 265 428 1.2E-17 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 Hamap MF_01491 Ribonuclease J [rnj]. 4 556 45.851 T 29-03-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 364 392 - T 29-03-2018 IPR001587 Ribonuclease J, conserved site CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 PIRSF PIRSF004803 1 556 1.3E-236 T 29-03-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 357 408 2.7E-9 T 29-03-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 10 554 5.3E-206 T 29-03-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 Gene3D G3DSA:3.60.15.10 1 448 3.4E-59 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 SUPERFAMILY SSF56281 11 423 2.54E-91 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 SMART SM00849 21 215 4.8E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05905 34c9bd5fd632cf52d719c0dbeeb7386f 560 Pfam PF00753 Metallo-beta-lactamase superfamily 18 167 4.6E-18 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 SUPERFAMILY SSF51230 3 89 1.23E-25 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Pfam PF02817 e3 binding domain 127 161 1.5E-16 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 203 431 6.2E-89 T 29-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Gene3D G3DSA:4.10.320.10 130 174 1.5E-19 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Gene3D G3DSA:2.40.50.100 47 129 3.9E-9 T 29-03-2018 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Pfam PF00364 Biotin-requiring enzyme 4 76 8.2E-24 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 SUPERFAMILY SSF52777 197 431 3.56E-87 T 29-03-2018 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 SUPERFAMILY SSF47005 121 167 2.35E-13 T 29-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Gene3D G3DSA:3.90.1170.30 2 46 7.6E-12 T 29-03-2018 CFE88_RS05865 88a4ff6ab73ed435faeb3423066b7d4e 433 Gene3D G3DSA:3.30.559.10 185 431 3.0E-90 T 29-03-2018 CFE88_RS00515 c3058a35e78191ca38658040e4f1c01b 158 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 2 120 4.5E-28 T 29-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CFE88_RS00515 c3058a35e78191ca38658040e4f1c01b 158 Gene3D G3DSA:3.40.50.300 1 153 2.9E-18 T 29-03-2018 CFE88_RS00515 c3058a35e78191ca38658040e4f1c01b 158 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 2 144 1.7E-38 T 29-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CFE88_RS00515 c3058a35e78191ca38658040e4f1c01b 158 SUPERFAMILY SSF52540 2 119 8.92E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08060 4799ead6192bb7d29ff1d3b4adce5e3c 679 Pfam PF00999 Sodium/hydrogen exchanger family 7 424 1.8E-52 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CFE88_RS05200 2eb9397b637f9cabcb526c159b4b993f 291 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 70 285 1.2E-61 T 29-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CFE88_RS05200 2eb9397b637f9cabcb526c159b4b993f 291 Gene3D G3DSA:3.40.50.450 113 266 4.3E-30 T 29-03-2018 CFE88_RS05200 2eb9397b637f9cabcb526c159b4b993f 291 Pfam PF02481 DNA recombination-mediator protein A 72 279 1.1E-69 T 29-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CFE88_RS05200 2eb9397b637f9cabcb526c159b4b993f 291 SUPERFAMILY SSF102405 81 275 7.94E-25 T 29-03-2018 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 SUPERFAMILY SSF53271 76 312 7.56E-67 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 11 321 50.047 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 11 127 1.3E-50 T 29-03-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 SMART SM01400 11 127 4.2E-81 T 29-03-2018 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 Pfam PF14572 Phosphoribosyl synthetase-associated domain 212 320 1.6E-27 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 Gene3D G3DSA:3.40.50.2020 163 299 1.0E-42 T 29-03-2018 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 135 150 - T 29-03-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 11 321 6.0E-127 T 29-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CFE88_RS08865 e4f2430c3fc668688ee619324c885f03 321 Gene3D G3DSA:3.40.50.2020 8 162 4.8E-67 T 29-03-2018 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 114 3.0E-57 T 29-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 SUPERFAMILY SSF56214 2 114 7.33E-30 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 115 5.7E-32 T 29-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 115 2.3E-26 T 29-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 115 23.204 T 29-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 Gene3D G3DSA:3.90.470.20 1 117 2.7E-29 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS01385 73c35df685389227fad39c2844e1ec4d 117 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 106 4.2E-20 T 29-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 Pfam PF12848 ABC transporter 224 309 4.5E-20 T 29-03-2018 IPR032781 ABC-transporter extension domain CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 Gene3D G3DSA:3.40.50.300 1 283 1.8E-55 T 29-03-2018 CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 SUPERFAMILY SSF52540 125 252 1.64E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 SUPERFAMILY SSF52540 2 92 1.64E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 SUPERFAMILY SSF52540 295 527 9.41E-39 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 Gene3D G3DSA:3.40.50.300 284 534 5.0E-41 T 29-03-2018 CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 SMART SM00382 26 238 2.3E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 SMART SM00382 344 514 5.1E-7 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 Pfam PF00005 ABC transporter 18 184 2.1E-20 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04275 f548c6a48c188e32277beaf743ced5ce 535 Pfam PF00005 ABC transporter 335 469 9.1E-18 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS06755 cd11f1c5375babc9e8e2ef2a3b120e55 126 SMART SM01298 7 119 5.1E-70 T 29-03-2018 IPR014916 Kinase associated protein B CFE88_RS06755 cd11f1c5375babc9e8e2ef2a3b120e55 126 Pfam PF08810 Kinase associated protein B 7 117 8.3E-43 T 29-03-2018 IPR014916 Kinase associated protein B CFE88_RS06755 cd11f1c5375babc9e8e2ef2a3b120e55 126 SUPERFAMILY SSF141251 2 118 2.09E-48 T 29-03-2018 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Gene3D G3DSA:3.30.499.10 26 239 5.0E-69 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 SUPERFAMILY SSF53732 10 635 3.27E-219 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Pfam PF00694 Aconitase C-terminal domain 700 827 5.7E-43 T 29-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 SUPERFAMILY SSF52016 639 898 6.67E-84 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 ProSitePatterns PS01244 Aconitase family signature 2. 501 514 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 899 0.0 T 29-03-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 ProSitePatterns PS00450 Aconitase family signature 1. 435 451 - T 29-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Gene3D G3DSA:3.40.1060.10 240 372 5.5E-44 T 29-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Gene3D G3DSA:3.20.19.10 662 900 2.1E-89 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Pfam PF00330 Aconitase family (aconitate hydratase) 76 570 4.3E-177 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 Gene3D G3DSA:3.30.499.10 373 584 5.3E-65 T 29-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 439 450 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 501 514 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 217 232 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 279 292 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 170 178 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 146 159 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 293 306 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 203 216 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04475 e7a27a8ccbf740dab82b18ca38155ad3 901 PRINTS PR00415 Aconitase family signature 373 387 5.1E-40 T 29-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 Gene3D G3DSA:3.30.572.10 2 318 2.7E-127 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 Hamap MF_00008 Thymidylate synthase [thyA]. 6 318 39.04 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 ProSitePatterns PS00091 Thymidylate synthase active site. 181 209 - T 29-03-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 SUPERFAMILY SSF55831 6 318 7.2E-131 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 PRINTS PR00108 Thymidylate synthase family signature 47 68 4.3E-50 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 PRINTS PR00108 Thymidylate synthase family signature 170 189 4.3E-50 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 PRINTS PR00108 Thymidylate synthase family signature 252 269 4.3E-50 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 PRINTS PR00108 Thymidylate synthase family signature 196 211 4.3E-50 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 PRINTS PR00108 Thymidylate synthase family signature 214 240 4.3E-50 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 8 318 4.3E-158 T 29-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS04070 64ca28e453589dd8d0a9f139d9036301 318 Pfam PF00303 Thymidylate synthase 8 318 5.1E-117 T 29-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 Pfam PF01266 FAD dependent oxidoreductase 3 347 2.9E-65 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 4 349 1.2E-77 T 29-03-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 Gene3D G3DSA:3.30.9.10 181 309 6.7E-27 T 29-03-2018 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 SUPERFAMILY SSF51905 320 365 4.08E-41 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 SUPERFAMILY SSF51905 1 222 4.08E-41 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 Gene3D G3DSA:3.50.50.60 1 180 7.3E-10 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11780 eb2469f89ae0619502d84cda8376611f 372 SUPERFAMILY SSF54373 222 309 7.72E-18 T 29-03-2018 CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 Gene3D G3DSA:3.40.190.10 202 295 5.1E-18 T 29-03-2018 CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 Gene3D G3DSA:3.10.105.10 296 509 2.1E-44 T 29-03-2018 CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 458 3.3E-70 T 29-03-2018 IPR000914 Solute-binding protein family 5 domain CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 PIRSF PIRSF002741 1 540 1.3E-91 T 29-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 Gene3D G3DSA:3.90.76.10 41 201 2.6E-32 T 29-03-2018 CFE88_RS06600 eb58a4cc8a48187ed1818e2fbf328726 547 SUPERFAMILY SSF53850 29 528 2.9E-110 T 29-03-2018 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 SUPERFAMILY SSF53474 3 257 7.22E-51 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 Pfam PF00561 alpha/beta hydrolase fold 22 122 4.5E-21 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 Pfam PF00561 alpha/beta hydrolase fold 164 246 1.9E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 Gene3D G3DSA:3.40.50.1820 7 258 1.1E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00412 Epoxide hydrolase signature 234 256 2.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00412 Epoxide hydrolase signature 46 61 2.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00412 Epoxide hydrolase signature 89 102 2.8E-6 T 29-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 7.2E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 203 217 7.2E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS08135 aed809be2b4bfab0d15f599aeefdcfb0 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 7.2E-8 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS03290 dc98f7f37573c9fa65d611e1de2eba04 117 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.1E-25 T 29-03-2018 CFE88_RS03290 dc98f7f37573c9fa65d611e1de2eba04 117 Gene3D G3DSA:3.30.460.10 1 115 1.9E-32 T 29-03-2018 CFE88_RS03290 dc98f7f37573c9fa65d611e1de2eba04 117 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 1.5E-34 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CFE88_RS03290 dc98f7f37573c9fa65d611e1de2eba04 117 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 23.456 T 29-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CFE88_RS03290 dc98f7f37573c9fa65d611e1de2eba04 117 SUPERFAMILY SSF81301 1 112 4.58E-39 T 29-03-2018 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 Gene3D G3DSA:3.90.226.10 16 285 1.3E-69 T 29-03-2018 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 SUPERFAMILY SSF52096 29 280 6.04E-81 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 Pfam PF01039 Carboxyl transferase domain 61 243 1.8E-16 T 29-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 5 283 1.6E-122 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 201 218 4.6E-37 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 130 144 4.6E-37 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 164 182 4.6E-37 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 230 241 4.6E-37 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 252 261 4.6E-37 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS02815 e0603a90cfb30f78d729db09e9b4bba9 285 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 282 38.514 T 29-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 CFE88_RS09630 1fc3d72d60e8cf7bc9fa178ee1eb0b7b 228 Pfam PF00005 ABC transporter 21 169 2.7E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS09630 1fc3d72d60e8cf7bc9fa178ee1eb0b7b 228 SMART SM00382 30 218 1.6E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS09630 1fc3d72d60e8cf7bc9fa178ee1eb0b7b 228 SUPERFAMILY SSF52540 1 223 8.4E-72 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09630 1fc3d72d60e8cf7bc9fa178ee1eb0b7b 228 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS09630 1fc3d72d60e8cf7bc9fa178ee1eb0b7b 228 Gene3D G3DSA:3.40.50.300 1 226 2.7E-64 T 29-03-2018 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 Gene3D G3DSA:3.40.50.300 319 577 1.2E-37 T 29-03-2018 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 29 307 1.9E-64 T 29-03-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 Pfam PF02374 Anion-transporting ATPase 338 480 1.1E-28 T 29-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 Pfam PF02374 Anion-transporting ATPase 25 306 3.4E-66 T 29-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 SUPERFAMILY SSF52540 337 545 2.04E-36 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 24 578 4.6E-262 T 29-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 SUPERFAMILY SSF52540 26 303 3.04E-44 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 Gene3D G3DSA:3.40.50.300 19 308 3.6E-47 T 29-03-2018 CFE88_RS10000 4e676e1b8e79a445c1f8c9a98e911232 581 PIRSF PIRSF001327 14 581 7.9E-241 T 29-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CFE88_RS07235 b07679f96a7175b572207b233dc4c0bb 245 SMART SM00530 5 61 1.7E-11 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS07235 b07679f96a7175b572207b233dc4c0bb 245 SUPERFAMILY SSF47413 1 63 9.85E-14 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS07235 b07679f96a7175b572207b233dc4c0bb 245 Gene3D G3DSA:1.10.260.40 4 102 1.8E-13 T 29-03-2018 CFE88_RS07235 b07679f96a7175b572207b233dc4c0bb 245 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 63 6.3E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 PIRSF PIRSF004486 1 311 1.1E-105 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 SUPERFAMILY SSF53335 214 308 2.24E-44 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 SUPERFAMILY SSF53335 3 112 2.24E-44 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 SUPERFAMILY SSF81799 113 214 6.41E-36 T 29-03-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 308 6.6E-122 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 Gene3D G3DSA:1.10.150.170 111 216 8.9E-40 T 29-03-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 4 310 37.555 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05550 7e675846e18e314e45ec8e7c1793b6a7 311 Pfam PF01795 MraW methylase family 2 308 4.7E-134 T 29-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 Pfam PF02637 GatB domain 325 472 5.6E-55 T 29-03-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 472 2.9E-180 T 29-03-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 SMART SM00845 325 472 5.7E-74 T 29-03-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 Gene3D G3DSA:1.10.10.410 412 473 2.1E-24 T 29-03-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 141 155 - T 29-03-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 Pfam PF02934 GatB/GatE catalytic domain 5 284 1.8E-112 T 29-03-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 SUPERFAMILY SSF55931 4 293 8.5E-123 T 29-03-2018 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 SUPERFAMILY SSF89095 294 399 1.74E-34 T 29-03-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 CFE88_RS01835 6c3e51c0d242ec68d342db172276469b 475 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 473 38.643 T 29-03-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 SUPERFAMILY SSF64288 66 234 7.22E-29 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 Pfam PF07702 UTRA domain 92 226 3.6E-26 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 Gene3D G3DSA:3.40.1410.10 70 236 5.7E-23 T 29-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 Gene3D G3DSA:1.10.10.10 1 69 1.6E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 SMART SM00866 91 230 7.9E-13 T 29-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 69 6.0E-7 T 29-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CFE88_RS05060 30d19951cf25c16bbf01983350a2623f 237 SUPERFAMILY SSF46785 2 73 4.63E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09110 b94c55337668b86dca039fbee94be051 224 SMART SM00014 99 211 4.4E-13 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS09110 b94c55337668b86dca039fbee94be051 224 SUPERFAMILY SSF48317 13 215 1.13E-26 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS09110 b94c55337668b86dca039fbee94be051 224 Pfam PF01569 PAP2 superfamily 100 211 5.8E-15 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS09110 b94c55337668b86dca039fbee94be051 224 Gene3D G3DSA:1.20.144.10 47 216 3.6E-19 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 Gene3D G3DSA:3.40.50.2000 186 354 5.4E-40 T 29-03-2018 CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 TIGRFAM TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA 1 371 1.3E-162 T 29-03-2018 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA GO:0016757|GO:0071793 CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 Pfam PF00534 Glycosyl transferases group 1 187 344 4.2E-37 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 SUPERFAMILY SSF53756 6 373 2.47E-76 T 29-03-2018 CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 Pfam PF13439 Glycosyltransferase Family 4 11 174 3.8E-18 T 29-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 CFE88_RS03935 40f2223c390b64e9f6762765f6877449 380 Gene3D G3DSA:3.40.50.2000 1 185 1.2E-11 T 29-03-2018 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 Gene3D G3DSA:3.40.50.150 1 237 1.7E-45 T 29-03-2018 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 141 155 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 11 233 5.1E-86 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 2 233 37.605 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 22 37 - T 29-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 Pfam PF01209 ubiE/COQ5 methyltransferase family 5 233 1.7E-95 T 29-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CFE88_RS03880 e8420371460817f7927a3e59fdb56004 241 SUPERFAMILY SSF53335 5 230 3.65E-51 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS04660 f013cc6dbd5e151ac4be3831954cc913 399 Pfam PF01548 Transposase 4 155 1.1E-16 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CFE88_RS04660 f013cc6dbd5e151ac4be3831954cc913 399 Pfam PF02371 Transposase IS116/IS110/IS902 family 267 344 4.4E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CFE88_RS08680 f013cc6dbd5e151ac4be3831954cc913 399 Pfam PF01548 Transposase 4 155 1.1E-16 T 29-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CFE88_RS08680 f013cc6dbd5e151ac4be3831954cc913 399 Pfam PF02371 Transposase IS116/IS110/IS902 family 267 344 4.4E-21 T 29-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CFE88_RS12130 9a7ab76d3830771e4c37b3bd4da35b81 239 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 128 2.7E-24 T 29-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 CFE88_RS12130 9a7ab76d3830771e4c37b3bd4da35b81 239 Gene3D G3DSA:1.10.3720.10 4 239 3.0E-42 T 29-03-2018 CFE88_RS12130 9a7ab76d3830771e4c37b3bd4da35b81 239 SUPERFAMILY SSF161098 25 225 4.58E-45 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS12130 9a7ab76d3830771e4c37b3bd4da35b81 239 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 234 2.2E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 Pfam PF02881 SRP54-type protein, helical bundle domain 96 160 5.8E-13 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 SUPERFAMILY SSF52540 182 381 1.01E-52 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 108 383 64.051 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 ProSitePatterns PS00018 EF-hand calcium-binding domain. 60 72 - T 29-03-2018 IPR018247 EF-Hand 1, calcium-binding site CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 356 369 - T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 SMART SM00382 181 361 9.0E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 SUPERFAMILY SSF47364 82 159 9.03E-20 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 SMART SM00963 84 165 4.0E-23 T 29-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 108 382 6.1E-118 T 29-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 Gene3D G3DSA:3.40.50.300 180 384 7.6E-43 T 29-03-2018 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 Pfam PF00448 SRP54-type protein, GTPase domain 183 382 3.1E-81 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 SMART SM00962 182 383 8.7E-125 T 29-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CFE88_RS05270 4b87f101fbc431abbdc3779cbcc8888e 408 Gene3D G3DSA:1.20.120.140 79 179 2.4E-22 T 29-03-2018 CFE88_RS02610 cac2598fa092e98a609c4a27a1ce7c53 113 Pfam PF03413 Peptidase propeptide and YPEB domain 54 109 2.3E-5 T 29-03-2018 IPR025711 PepSY domain CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 Gene3D G3DSA:3.30.1330.80 92 198 6.4E-42 T 29-03-2018 CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 SUPERFAMILY SSF117856 3 234 4.36E-79 T 29-03-2018 CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 3 234 1.3E-76 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 PIRSF PIRSF001332 1 234 1.2E-93 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 Gene3D G3DSA:3.30.1330.80 2 91 2.7E-31 T 29-03-2018 CFE88_RS11380 e453ce6331da31afdfdc80d6b6754310 234 Pfam PF03306 Alpha-acetolactate decarboxylase 5 222 2.0E-77 T 29-03-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 8 180 2.8E-83 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 Pfam PF00227 Proteasome subunit 6 179 8.2E-27 T 29-03-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-446652|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8941858|Reactome: R-HSA-8951664|Reactome: R-HSA-983168 CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 Gene3D G3DSA:3.60.20.10 8 180 2.5E-28 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 SUPERFAMILY SSF56235 5 180 1.49E-58 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 7 180 40.745 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CFE88_RS05180 c357b1178578fcee9e445cd703497f28 180 PIRSF PIRSF039093 1 180 5.4E-86 T 29-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 Gene3D G3DSA:1.10.10.10 1 91 5.0E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 SUPERFAMILY SSF46785 1 84 9.91E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 Gene3D G3DSA:3.40.190.10 176 260 1.1E-18 T 29-03-2018 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.4E-17 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 Pfam PF03466 LysR substrate binding domain 89 289 1.0E-43 T 29-03-2018 IPR005119 LysR, substrate-binding CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.7E-5 T 29-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 Gene3D G3DSA:3.40.190.10 92 175 1.1E-19 T 29-03-2018 CFE88_RS11365 f69d96b32e2b9d64188f3541ef87eeef 293 SUPERFAMILY SSF53850 90 290 1.46E-39 T 29-03-2018 CFE88_RS06145 040127cce0804e263ae7096a52f3629a 312 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 19 302 1.8E-31 T 29-03-2018 CFE88_RS06145 040127cce0804e263ae7096a52f3629a 312 Pfam PF01040 UbiA prenyltransferase family 28 280 2.5E-37 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CFE88_RS06145 040127cce0804e263ae7096a52f3629a 312 PIRSF PIRSF005355 2 308 2.1E-79 T 29-03-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 CFE88_RS06145 040127cce0804e263ae7096a52f3629a 312 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 10 303 19.079 T 29-03-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 61 2.2E-15 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 63 14.507 T 29-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 SMART SM01409 8 62 3.1E-12 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 Pfam PF01192 RNA polymerase Rpb6 9 61 1.0E-14 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 SUPERFAMILY SSF63562 1 66 6.1E-18 T 29-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CFE88_RS05390 e08cab72959845eb0345e98eb61dff1c 70 Gene3D G3DSA:3.90.940.10 1 69 3.3E-18 T 29-03-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 PIRSF PIRSF037730 7 291 5.3E-132 T 29-03-2018 IPR017273 Probable cell wall amidase LytH GO:0005576|GO:0016811|GO:0071555 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 Gene3D G3DSA:2.40.50.110 37 104 1.3E-10 T 29-03-2018 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 122 286 6.1E-46 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 Gene3D G3DSA:3.40.630.40 117 291 9.4E-52 T 29-03-2018 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 SMART SM00646 178 286 6.0E-35 T 29-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 SMART SM00287 41 105 6.5E-12 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 Pfam PF08239 Bacterial SH3 domain 52 100 7.4E-10 T 29-03-2018 IPR003646 SH3-like domain, bacterial-type CFE88_RS03110 708fd4962caabf0cc0216ae1c905e32d 291 SUPERFAMILY SSF53187 119 289 4.39E-49 T 29-03-2018 CFE88_RS06260 134b8e721190be1f473484fb7f912429 268 Pfam PF03741 Integral membrane protein TerC family 15 217 3.4E-52 T 29-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 CFE88_RS06260 134b8e721190be1f473484fb7f912429 268 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 12 257 2.3E-90 T 29-03-2018 IPR022493 Integral membrane YkoY CFE88_RS06260 134b8e721190be1f473484fb7f912429 268 Gene3D G3DSA:1.20.1250.20 136 268 0.081 T 29-03-2018 CFE88_RS06260 134b8e721190be1f473484fb7f912429 268 SUPERFAMILY SSF103473 8 256 4.05E-8 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS06260 134b8e721190be1f473484fb7f912429 268 Gene3D G3DSA:1.20.1250.20 4 112 1.9E-4 T 29-03-2018 CFE88_RS06840 575a941c01b919d33e82e8096734d1f7 80 Pfam PF01106 NifU-like domain 12 77 8.5E-27 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CFE88_RS06840 575a941c01b919d33e82e8096734d1f7 80 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 17 79 6.0E-30 T 29-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CFE88_RS06840 575a941c01b919d33e82e8096734d1f7 80 SUPERFAMILY SSF117916 3 79 7.41E-26 T 29-03-2018 IPR034904 Fe-S cluster assembly domain CFE88_RS06840 575a941c01b919d33e82e8096734d1f7 80 Gene3D G3DSA:3.30.300.130 3 80 2.4E-28 T 29-03-2018 IPR034904 Fe-S cluster assembly domain CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 Gene3D G3DSA:3.40.1380.10 42 239 3.6E-69 T 29-03-2018 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 Pfam PF00231 ATP synthase 3 287 6.5E-93 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 Gene3D G3DSA:1.10.287.80 2 41 3.1E-17 T 29-03-2018 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 Gene3D G3DSA:1.10.287.80 240 282 1.1E-14 T 29-03-2018 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 3.5E-101 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 1.4E-34 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.4E-34 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 1.4E-34 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.4E-34 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 SUPERFAMILY SSF52943 2 287 7.46E-85 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01255 b0e5a4fa193de9bb740609f79afec5bf 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 35.031 T 29-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 SUPERFAMILY SSF161111 19 218 2.22E-59 T 29-03-2018 CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 23 297 9.4E-88 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 Gene3D G3DSA:1.20.1510.10 20 217 8.3E-58 T 29-03-2018 CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 Pfam PF01545 Cation efflux family 24 217 3.8E-52 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 Gene3D G3DSA:3.30.70.1350 218 300 5.5E-10 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS07105 63d867b52f950255567bc3dc4fac3558 313 SUPERFAMILY SSF160240 221 298 2.75E-7 T 29-03-2018 CFE88_RS12710 473816f989e69415ca0b9a3de7b5f3b5 189 Pfam PF08006 Protein of unknown function (DUF1700) 1 184 1.1E-45 T 29-03-2018 IPR012963 Protein of unknown function DUF1700 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 326 40.767 T 29-03-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 193 203 2.5E-25 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 140 161 2.5E-25 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 14 30 2.5E-25 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 2.5E-25 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 Pfam PF00579 tRNA synthetases class I (W and Y) 3 281 7.5E-79 T 29-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 19 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 Gene3D G3DSA:3.40.50.620 1 199 8.5E-69 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 325 2.8E-110 T 29-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 SUPERFAMILY SSF52374 3 325 8.44E-90 T 29-03-2018 CFE88_RS06595 cd545127daea08e3ac97dc12839f5542 329 Gene3D G3DSA:1.10.240.10 200 308 4.3E-31 T 29-03-2018 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 Gene3D G3DSA:3.30.1440.10 1 179 1.0E-80 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 PIRSF PIRSF002161 1 179 7.0E-71 T 29-03-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 Pfam PF00281 Ribosomal protein L5 24 80 7.0E-29 T 29-03-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 SUPERFAMILY SSF55282 3 179 3.53E-78 T 29-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 29-03-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.708 T 29-03-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00675 c822c35a1180d467c88f6f5133676568 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 7.7E-42 T 29-03-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS07650 ca375a5cc76c99bcad77b0e2ad15d3c1 139 PIRSF PIRSF006113 12 135 7.8E-23 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CFE88_RS07650 ca375a5cc76c99bcad77b0e2ad15d3c1 139 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 15 105 3.0E-27 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CFE88_RS07650 ca375a5cc76c99bcad77b0e2ad15d3c1 139 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 16 133 3.9E-30 T 29-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 CFE88_RS07650 ca375a5cc76c99bcad77b0e2ad15d3c1 139 SUPERFAMILY SSF55620 12 134 2.45E-33 T 29-03-2018 CFE88_RS07650 ca375a5cc76c99bcad77b0e2ad15d3c1 139 Gene3D G3DSA:3.30.479.10 2 136 2.1E-35 T 29-03-2018 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 Gene3D G3DSA:3.20.20.140 68 406 7.2E-111 T 29-03-2018 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 SUPERFAMILY SSF51338 3 55 3.24E-23 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 SUPERFAMILY SSF51338 374 424 3.24E-23 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 ProSitePatterns PS00483 Dihydroorotase signature 2. 302 313 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 ProSitePatterns PS00482 Dihydroorotase signature 1. 57 65 - T 29-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 Hamap MF_00220_B Dihydroorotase [pyrC]. 1 424 46.993 T 29-03-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 SUPERFAMILY SSF51556 54 368 7.67E-115 T 29-03-2018 IPR032466 Metal-dependent hydrolase CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 Gene3D G3DSA:2.30.40.10 2 67 7.7E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 Pfam PF01979 Amidohydrolase family 51 420 9.0E-51 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 CFE88_RS05435 79b8c5d193b4ae1226f0da14070cee62 425 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 17 423 8.9E-147 T 29-03-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 TIGRFAM TIGR02882 QoxB: cytochrome aa3 quinol oxidase, subunit I 5 646 0.0 T 29-03-2018 IPR014233 Quinol oxidase subunit I GO:0005507|GO:0016021|GO:0016682|GO:0020037|GO:0055114 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 Gene3D G3DSA:1.20.210.10 42 557 1.9E-179 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 55 500 1.6E-139 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 Gene3D G3DSA:1.10.287.70 570 637 3.0E-11 T 29-03-2018 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 SUPERFAMILY SSF81442 44 555 1.83E-168 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 275 329 - T 29-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 93 116 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 120 144 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 319 334 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 378 396 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 273 294 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 406 425 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 46 71 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 222 241 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 343 364 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 193 211 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 456 477 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06050 36a07c3709ee4b187c4f06a6c9876216 662 PRINTS PR01165 Cytochrome c oxidase subunit I signature 162 174 3.4E-94 T 29-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS00865 599adb0c822550084f7a542f0a982a9b 653 Pfam PF06276 Ferric iron reductase FhuF-like transporter 470 637 1.4E-28 T 29-03-2018 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00865 599adb0c822550084f7a542f0a982a9b 653 Pfam PF04183 IucA / IucC family 194 436 1.1E-56 T 29-03-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 SUPERFAMILY SSF46785 167 256 4.91E-41 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 257 133.378 T 29-03-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 Pfam PF08222 CodY helix-turn-helix domain 197 256 1.8E-34 T 29-03-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 PIRSF PIRSF011572 1 257 1.2E-118 T 29-03-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 Gene3D G3DSA:3.30.450.40 1 159 1.1E-25 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 Gene3D G3DSA:1.10.10.10 160 257 2.8E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 3 253 1.7E-108 T 29-03-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 CFE88_RS05170 de286d5092f4c871df050ea665b08312 257 Pfam PF06018 CodY GAF-like domain 2 178 2.9E-72 T 29-03-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.363 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 SUPERFAMILY SSF54999 5 102 1.83E-37 T 29-03-2018 IPR027486 Ribosomal protein S10 domain CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 29-03-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 2.1E-35 T 29-03-2018 IPR027486 Ribosomal protein S10 domain CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 8.2E-46 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 SMART SM01403 7 101 3.0E-58 T 29-03-2018 IPR027486 Ribosomal protein S10 domain CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 Gene3D G3DSA:3.30.70.600 3 102 3.6E-35 T 29-03-2018 IPR027486 Ribosomal protein S10 domain CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.1E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.1E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00610 0e49c8543fa37bcfb6b13146ae461a22 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.1E-18 T 29-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS07570 17f23d365141abe9e4aa79becd846298 179 SUPERFAMILY SSF56784 5 175 3.3E-34 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS07570 17f23d365141abe9e4aa79becd846298 179 Gene3D G3DSA:3.40.50.1000 58 179 1.2E-32 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS07570 17f23d365141abe9e4aa79becd846298 179 Gene3D G3DSA:1.10.40.40 18 57 1.3E-16 T 29-03-2018 CFE88_RS07570 17f23d365141abe9e4aa79becd846298 179 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 6 172 1.7E-36 T 29-03-2018 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 4 376 1.5E-136 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 SUPERFAMILY SSF53383 2 376 3.16E-109 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 PIRSF PIRSF000521 104 153 2.4E-4 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 PIRSF PIRSF000521 13 113 0.009 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 PIRSF PIRSF000521 150 376 2.9E-36 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 203 240 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 Gene3D G3DSA:3.40.640.10 154 272 1.6E-37 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 Gene3D G3DSA:3.90.1150.10 273 376 4.6E-20 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 Gene3D G3DSA:3.90.1150.10 2 153 1.8E-37 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 2 376 40.61 T 29-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CFE88_RS03640 cfd0d8d53c5343fa25ca9cac183647e9 376 Pfam PF00202 Aminotransferase class-III 16 376 3.9E-106 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 ProSitePatterns PS00501 Signal peptidases I serine active site. 34 41 - T 29-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 8 177 1.9E-52 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 ProSitePatterns PS00760 Signal peptidases I lysine active site. 77 89 - T 29-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 25 41 9.4E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 75 87 9.4E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 137 156 9.4E-21 T 29-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 ProSitePatterns PS00761 Signal peptidases I signature 3. 142 155 - T 29-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 Gene3D G3DSA:2.10.109.10 21 191 6.6E-45 T 29-03-2018 CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 SUPERFAMILY SSF51306 25 182 5.41E-49 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS06690 1e7aecf30247eee72147d7d95d48c142 191 Pfam PF00717 Peptidase S24-like 32 99 6.9E-20 T 29-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 SUPERFAMILY SSF53623 223 292 4.12E-31 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 SUPERFAMILY SSF53623 50 185 4.12E-31 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 Gene3D G3DSA:3.90.190.20 298 410 0.014 T 29-03-2018 CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 Pfam PF08353 Domain of unknown function (DUF1727) 313 421 4.1E-29 T 29-03-2018 IPR013564 Domain of unknown function DUF1727 CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 Gene3D G3DSA:3.40.1190.10 45 297 2.6E-40 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS01870 99861aa19673d064d86a3b52116294b7 437 Pfam PF08245 Mur ligase middle domain 53 274 6.5E-17 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 PRINTS PR01576 Peptide deformylase signature 119 148 8.7E-19 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 PRINTS PR01576 Peptide deformylase signature 88 99 8.7E-19 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 PRINTS PR01576 Peptide deformylase signature 33 62 8.7E-19 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 PRINTS PR01576 Peptide deformylase signature 100 118 8.7E-19 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 SUPERFAMILY SSF56420 3 159 1.96E-39 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 Pfam PF01327 Polypeptide deformylase 3 148 7.5E-38 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 Hamap MF_00163 Peptide deformylase [def]. 2 161 20.794 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 PIRSF PIRSF004749 1 162 1.2E-41 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS05370 987eede7f945af39c7479a7cb72d9613 162 Gene3D G3DSA:3.90.45.10 1 160 6.7E-40 T 29-03-2018 IPR023635 Peptide deformylase CFE88_RS00100 027e77dce833fe956bd505700b5b1ce2 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 53 7.3E-8 T 29-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CFE88_RS00100 027e77dce833fe956bd505700b5b1ce2 183 SUPERFAMILY SSF46689 3 67 4.49E-13 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS00100 027e77dce833fe956bd505700b5b1ce2 183 Gene3D G3DSA:1.10.10.60 44 172 2.5E-5 T 29-03-2018 CFE88_RS00100 027e77dce833fe956bd505700b5b1ce2 183 Gene3D G3DSA:1.10.10.60 3 43 6.0E-10 T 29-03-2018 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 SUPERFAMILY SSF142695 205 372 5.89E-59 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 PIRSF PIRSF001259 1 393 4.7E-151 T 29-03-2018 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 203 393 36.329 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 209 393 2.5E-70 T 29-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Pfam PF00925 GTP cyclohydrolase II 210 368 3.0E-64 T 29-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Gene3D G3DSA:3.90.870.10 1 211 2.3E-86 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 202 36.427 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 198 6.0E-70 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 9 196 2.6E-79 T 29-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 2 391 51.78 T 29-03-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539 CFE88_RS02515 5770bc69dfc2f08c10e1a5770edad8bb 393 SUPERFAMILY SSF55821 2 200 3.89E-77 T 29-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain CFE88_RS02245 250173a056323652b9afb3556d603be0 207 SUPERFAMILY SSF46894 140 207 4.08E-23 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 Pfam PF00072 Response regulator receiver domain 4 116 1.4E-24 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 Gene3D G3DSA:1.10.10.10 127 207 7.4E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02245 250173a056323652b9afb3556d603be0 207 SMART SM00421 144 201 9.4E-27 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 SUPERFAMILY SSF52172 1 130 1.42E-32 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS02245 250173a056323652b9afb3556d603be0 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 1.4E-23 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 SMART SM00448 2 116 1.1E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 Gene3D G3DSA:3.40.50.2300 1 126 1.8E-31 T 29-03-2018 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 2.9E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 2.9E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS02245 250173a056323652b9afb3556d603be0 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 2.9E-15 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 Gene3D G3DSA:3.90.1150.10 248 387 1.7E-34 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 PIRSF PIRSF001434 3 375 2.3E-125 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 SUPERFAMILY SSF53383 23 374 1.79E-101 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 Gene3D G3DSA:3.40.640.10 5 246 6.0E-51 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS09515 1740b8ebbe68b94343e9ba2280215bb0 391 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 16 373 1.9E-124 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS07945 d32617dcae4463bac8b1d52880dac422 253 SUPERFAMILY SSF52540 3 224 3.06E-68 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07945 d32617dcae4463bac8b1d52880dac422 253 Pfam PF00005 ABC transporter 23 171 1.2E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07945 d32617dcae4463bac8b1d52880dac422 253 SMART SM00382 32 219 8.2E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07945 d32617dcae4463bac8b1d52880dac422 253 Gene3D G3DSA:3.40.50.300 2 243 1.1E-60 T 29-03-2018 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 Pfam PF00290 Tryptophan synthase alpha chain 4 230 1.9E-69 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 34 47 - T 29-03-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 4 247 27.408 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 Gene3D G3DSA:3.20.20.70 1 246 1.2E-52 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 6 240 6.6E-61 T 29-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CFE88_RS04370 0e2aa97288717dcbde6a26dab888f4f0 247 SUPERFAMILY SSF51366 6 242 5.09E-69 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 Pfam PF02603 HPr Serine kinase N terminus 4 125 1.5E-39 T 29-03-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 Gene3D G3DSA:3.40.50.300 131 305 9.7E-43 T 29-03-2018 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 Pfam PF07475 HPr Serine kinase C-terminal domain 128 296 1.3E-74 T 29-03-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 Gene3D G3DSA:3.40.1390.20 2 127 1.2E-42 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 SUPERFAMILY SSF53795 131 297 1.4E-39 T 29-03-2018 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 1 304 41.4 T 29-03-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 4 301 9.1E-117 T 29-03-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 CFE88_RS07375 3dc78d2b7b4440dcf7706537a04b5747 310 SUPERFAMILY SSF75138 2 128 1.07E-38 T 29-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like CFE88_RS10890 f99e2813bfa9403975da3ec5236ce785 252 Pfam PF00756 Putative esterase 11 245 4.7E-11 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CFE88_RS10890 f99e2813bfa9403975da3ec5236ce785 252 SUPERFAMILY SSF53474 3 251 4.65E-42 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10890 f99e2813bfa9403975da3ec5236ce785 252 Gene3D G3DSA:3.40.50.1820 1 252 5.6E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00025 ae2b7aaa17c4624f30f821d5442bcb69 176 Gene3D G3DSA:3.40.630.30 1 176 1.2E-28 T 29-03-2018 CFE88_RS00025 ae2b7aaa17c4624f30f821d5442bcb69 176 SUPERFAMILY SSF55729 3 158 4.01E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00025 ae2b7aaa17c4624f30f821d5442bcb69 176 Pfam PF00583 Acetyltransferase (GNAT) family 28 147 1.5E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS10535 1b55430566d1b0dae4f8037525253bce 303 Gene3D G3DSA:3.40.190.10 95 190 1.7E-10 T 29-03-2018 CFE88_RS10535 1b55430566d1b0dae4f8037525253bce 303 Pfam PF09084 NMT1/THI5 like 13 226 2.2E-55 T 29-03-2018 IPR015168 SsuA/THI5-like CFE88_RS10535 1b55430566d1b0dae4f8037525253bce 303 SUPERFAMILY SSF53850 3 231 2.12E-26 T 29-03-2018 CFE88_RS10535 1b55430566d1b0dae4f8037525253bce 303 Gene3D G3DSA:3.40.190.10 1 94 2.6E-9 T 29-03-2018 CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 SUPERFAMILY SSF64182 336 640 5.23E-69 T 29-03-2018 CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 PIRSF PIRSF026583 1 655 4.9E-260 T 29-03-2018 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 SMART SM00267 130 297 1.2E-4 T 29-03-2018 IPR000160 GGDEF domain CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 Gene3D G3DSA:3.30.70.270 114 287 6.9E-4 T 29-03-2018 CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 Pfam PF02272 DHHA1 domain 516 645 2.9E-13 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 Pfam PF01368 DHH family 337 494 5.5E-22 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS09765 eabb9491803fa8eca79d9f8fa802a0d6 655 Gene3D G3DSA:3.90.1640.10 315 533 1.6E-44 T 29-03-2018 CFE88_RS05445 baaf76a83b1f6bf90943545491174d70 435 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 22 426 5.0E-130 T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CFE88_RS05445 baaf76a83b1f6bf90943545491174d70 435 Pfam PF00860 Permease family 25 397 1.8E-108 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS05445 baaf76a83b1f6bf90943545491174d70 435 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 346 366 - T 29-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 SUPERFAMILY SSF46689 204 247 1.79E-8 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 Gene3D G3DSA:1.10.10.60 200 248 1.7E-10 T 29-03-2018 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 Gene3D G3DSA:2.60.40.1500 564 701 6.2E-12 T 29-03-2018 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 Gene3D G3DSA:1.10.10.60 109 199 5.3E-10 T 29-03-2018 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 200 242 - T 29-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 SMART SM00342 163 246 1.1E-21 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS12280 6b71097ea7fd9162f67ccd8c73c5e821 701 Pfam PF12833 Helix-turn-helix domain 170 247 1.5E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS02685 b41346936bf3e0f8402144fd0391f72a 207 SUPERFAMILY SSF69593 16 199 2.62E-35 T 29-03-2018 CFE88_RS02685 b41346936bf3e0f8402144fd0391f72a 207 Pfam PF01553 Acyltransferase 21 143 3.9E-20 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CFE88_RS02685 b41346936bf3e0f8402144fd0391f72a 207 Gene3D G3DSA:3.40.1130.10 1 207 6.1E-35 T 29-03-2018 CFE88_RS02685 b41346936bf3e0f8402144fd0391f72a 207 SMART SM00563 34 146 1.3E-19 T 29-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 CFE88_RS09575 19b96fee384e9deeabfe9bc36fc0749d 154 Gene3D G3DSA:1.20.120.450 15 151 5.0E-8 T 29-03-2018 CFE88_RS09575 19b96fee384e9deeabfe9bc36fc0749d 154 SUPERFAMILY SSF109854 80 151 8.24E-5 T 29-03-2018 IPR034660 DinB/YfiT-like putative metalloenzymes CFE88_RS07000 dd92867a2134934f2cba6092827b302a 128 SUPERFAMILY SSF110455 1 111 2.35E-33 T 29-03-2018 CFE88_RS07000 dd92867a2134934f2cba6092827b302a 128 SMART SM00493 5 79 8.7E-11 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS07000 dd92867a2134934f2cba6092827b302a 128 Gene3D G3DSA:3.40.1360.20 1 119 1.9E-15 T 29-03-2018 CFE88_RS07000 dd92867a2134934f2cba6092827b302a 128 Pfam PF01751 Toprim domain 7 75 1.3E-5 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 Gene3D G3DSA:3.40.630.30 169 390 5.2E-29 T 29-03-2018 CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 SUPERFAMILY SSF55729 310 410 1.91E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 SUPERFAMILY SSF55729 167 245 1.91E-31 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 SUPERFAMILY SSF46589 245 309 2.2E-17 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 Pfam PF02388 FemAB family 6 414 5.0E-149 T 29-03-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 Gene3D G3DSA:3.40.630.30 1 168 1.9E-35 T 29-03-2018 CFE88_RS04355 4656da9b4731e516d7a93185d2eff41d 417 SUPERFAMILY SSF55729 1 164 5.3E-58 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 PRINTS PR00095 Anthranilate synthase component I signature 401 415 1.9E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 PRINTS PR00095 Anthranilate synthase component I signature 321 334 1.9E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 PRINTS PR00095 Anthranilate synthase component I signature 307 320 1.9E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 PRINTS PR00095 Anthranilate synthase component I signature 416 430 1.9E-17 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 SUPERFAMILY SSF56322 15 466 3.14E-127 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 Pfam PF00425 chorismate binding enzyme 200 459 1.8E-86 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 Gene3D G3DSA:3.60.120.10 3 467 2.6E-132 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS04400 ffaa84c4dccbd1fa82a448778f986901 468 Pfam PF04715 Anthranilate synthase component I, N terminal region 15 150 2.9E-26 T 29-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS00680 af3e74aeb8341b4cbca1f1054cd88015 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 1.6E-24 T 29-03-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00680 af3e74aeb8341b4cbca1f1054cd88015 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.831 T 29-03-2018 IPR023053 Ribosomal protein S14, type Z CFE88_RS00680 af3e74aeb8341b4cbca1f1054cd88015 61 SUPERFAMILY SSF57716 3 61 2.14E-22 T 29-03-2018 CFE88_RS00680 af3e74aeb8341b4cbca1f1054cd88015 61 Gene3D G3DSA:4.10.830.10 1 61 3.3E-22 T 29-03-2018 CFE88_RS00680 af3e74aeb8341b4cbca1f1054cd88015 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 29-03-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 4 67 2.1E-21 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 Pfam PF00403 Heavy-metal-associated domain 6 66 3.6E-19 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 Gene3D G3DSA:3.30.70.100 1 68 1.5E-22 T 29-03-2018 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 PRINTS PR00944 Copper ion binding protein signature 28 41 1.6E-6 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 PRINTS PR00944 Copper ion binding protein signature 54 67 1.6E-6 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 PRINTS PR00944 Copper ion binding protein signature 3 15 1.6E-6 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 PRINTS PR00944 Copper ion binding protein signature 15 28 1.6E-6 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS11485 cbcf42e4413dfeb0c6d28be814e7280d 68 SUPERFAMILY SSF55008 2 67 1.19E-21 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS00040 73592163e07a7d4f665a19508e43bb79 559 PIRSF PIRSF032341 1 559 0.0 T 29-03-2018 IPR016993 Predicted glycerophosphotransferase, SA2157 type CFE88_RS00040 73592163e07a7d4f665a19508e43bb79 559 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 225 551 9.8E-44 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS00040 73592163e07a7d4f665a19508e43bb79 559 SUPERFAMILY SSF53756 344 485 1.88E-6 T 29-03-2018 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Gene3D G3DSA:3.30.565.10 413 564 4.5E-45 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SUPERFAMILY SSF55785 222 335 4.0E-8 T 29-03-2018 IPR000014 PAS domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SUPERFAMILY SSF55874 400 562 2.49E-45 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Gene3D G3DSA:3.30.450.20 225 348 5.7E-16 T 29-03-2018 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Gene3D G3DSA:1.10.287.130 349 406 1.4E-17 T 29-03-2018 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SUPERFAMILY SSF47384 329 410 1.94E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SMART SM00388 343 410 1.3E-22 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Pfam PF00512 His Kinase A (phospho-acceptor) domain 344 409 7.8E-19 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SMART SM00387 454 565 6.4E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 519 6.4E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 544 6.4E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 505 6.4E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 PRINTS PR00344 Bacterial sensor protein C-terminal signature 550 563 6.4E-17 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Pfam PF13426 PAS domain 238 335 3.1E-6 T 29-03-2018 IPR000014 PAS domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 560 6.2E-25 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS02855 fe69e4747bc7b29ffb4227e3d381952b 565 SMART SM00091 227 292 0.0075 T 29-03-2018 IPR000014 PAS domain CFE88_RS08565 c0f72b3f6a15420f30dde5b487fc915e 202 Gene3D G3DSA:3.40.50.150 9 201 4.9E-31 T 29-03-2018 CFE88_RS08565 c0f72b3f6a15420f30dde5b487fc915e 202 Pfam PF05175 Methyltransferase small domain 27 198 6.1E-51 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 CFE88_RS08565 c0f72b3f6a15420f30dde5b487fc915e 202 SUPERFAMILY SSF53335 7 200 5.43E-38 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS08445 459733e784f161be2b051ddf6bbcdc05 188 Gene3D G3DSA:3.40.50.360 1 184 1.1E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS08445 459733e784f161be2b051ddf6bbcdc05 188 Pfam PF03358 NADPH-dependent FMN reductase 1 141 5.5E-26 T 29-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CFE88_RS08445 459733e784f161be2b051ddf6bbcdc05 188 SUPERFAMILY SSF52218 1 168 1.86E-30 T 29-03-2018 IPR029039 Flavoprotein-like domain CFE88_RS10725 4abf821d0bf7799e2a380e8317a880a9 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 1.3E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10725 4abf821d0bf7799e2a380e8317a880a9 271 Gene3D G3DSA:1.10.3720.10 8 268 4.8E-28 T 29-03-2018 CFE88_RS10725 4abf821d0bf7799e2a380e8317a880a9 271 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 20 271 4.2E-79 T 29-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 CFE88_RS10725 4abf821d0bf7799e2a380e8317a880a9 271 SUPERFAMILY SSF161098 75 261 1.31E-32 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 2.1E-25 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Pfam PF00009 Elongation factor Tu GTP binding domain 12 270 6.3E-56 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 55 70 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 SUPERFAMILY SSF52540 6 270 2.27E-90 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 SUPERFAMILY SSF54980 388 459 6.12E-17 T 29-03-2018 IPR035647 EF-G domain III/V-like CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Pfam PF16658 Class II release factor RF3, C-terminal domain 382 507 2.4E-45 T 29-03-2018 IPR032090 Peptide chain release factor 3, C-terminal CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 1 520 49.324 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Pfam PF03144 Elongation factor Tu domain 2 308 373 2.2E-12 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 518 1.2E-192 T 29-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Gene3D G3DSA:2.40.30.10 265 385 2.9E-23 T 29-03-2018 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Gene3D G3DSA:3.30.70.870 388 460 1.0E-12 T 29-03-2018 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 PRINTS PR00315 GTP-binding elongation factor signature 98 109 1.9E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 PRINTS PR00315 GTP-binding elongation factor signature 134 143 1.9E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 PRINTS PR00315 GTP-binding elongation factor signature 62 70 1.9E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.9E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 PRINTS PR00315 GTP-binding elongation factor signature 82 92 1.9E-11 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 Gene3D G3DSA:3.40.50.300 4 264 2.5E-43 T 29-03-2018 CFE88_RS06265 08fbbff7b81f65efb5695d265bcd26c2 520 SUPERFAMILY SSF50447 255 379 2.83E-26 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS11295 5717e1f0c615e352cdaf58fd453ec33a 148 Gene3D G3DSA:3.30.70.100 37 145 1.2E-20 T 29-03-2018 CFE88_RS11295 5717e1f0c615e352cdaf58fd453ec33a 148 Pfam PF03992 Antibiotic biosynthesis monooxygenase 44 118 2.7E-12 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CFE88_RS11295 5717e1f0c615e352cdaf58fd453ec33a 148 SUPERFAMILY SSF54909 44 122 4.98E-21 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 309 33.65 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 Gene3D G3DSA:3.40.50.150 114 312 6.1E-38 T 29-03-2018 CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 SUPERFAMILY SSF53335 81 308 8.14E-42 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 PIRSF PIRSF000401 1 311 1.0E-115 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 309 4.9E-106 T 29-03-2018 CFE88_RS03360 a457d8bba2d86f4bfae0a4746d73bb5e 312 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 303 2.8E-74 T 29-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 SUPERFAMILY SSF52540 78 167 3.5E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 SUPERFAMILY SSF52540 202 372 3.5E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Gene3D G3DSA:3.30.1360.120 1 125 1.2E-40 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 459 3.7E-129 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 PRINTS PR00449 Transforming protein P21 ras signature 222 243 7.0E-5 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 PRINTS PR00449 Transforming protein P21 ras signature 326 339 7.0E-5 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 PRINTS PR00449 Transforming protein P21 ras signature 262 284 7.0E-5 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 225 371 3.0E-27 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 124 1.5E-36 T 29-03-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 SUPERFAMILY SSF116878 125 225 9.68E-49 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 SUPERFAMILY SSF116878 384 459 9.68E-49 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Gene3D G3DSA:1.20.120.430 287 459 2.9E-34 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Gene3D G3DSA:1.20.120.430 126 286 3.0E-27 T 29-03-2018 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 459 33.577 T 29-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Pfam PF01926 50S ribosome-binding GTPase 225 336 6.9E-25 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS09685 b1f0d5a9e1ce00d401b5de9f0cf00e7a 459 Pfam PF12631 MnmE helical domain 127 456 1.7E-57 T 29-03-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 Gene3D G3DSA:3.40.630.10 167 357 2.9E-46 T 29-03-2018 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 Gene3D G3DSA:2.40.30.40 69 161 2.9E-33 T 29-03-2018 IPR023367 Peptidase M42, domain 2 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 PIRSF PIRSF001123 1 358 5.9E-146 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 SUPERFAMILY SSF101821 70 180 1.04E-33 T 29-03-2018 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 SUPERFAMILY SSF53187 5 80 6.53E-68 T 29-03-2018 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 SUPERFAMILY SSF53187 172 354 6.53E-68 T 29-03-2018 CFE88_RS11930 853012c0a7dee58b21235617eee26e89 358 Pfam PF05343 M42 glutamyl aminopeptidase 45 340 3.8E-110 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 PIRSF PIRSF001455 1 354 2.3E-117 T 29-03-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 Gene3D G3DSA:1.20.1090.10 167 354 5.8E-45 T 29-03-2018 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 SUPERFAMILY SSF56796 1 351 4.45E-90 T 29-03-2018 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 12 345 4.3E-108 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 Pfam PF01761 3-dehydroquinate synthase 62 316 2.1E-87 T 29-03-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 348 34.111 T 29-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CFE88_RS03900 808ccc948ef53b78c035dccb3d74209a 354 Gene3D G3DSA:3.40.50.1970 2 166 7.8E-44 T 29-03-2018 CFE88_RS01655 0a3e925bfb8ec21385f1c4e25bb3e428 354 TIGRFAM TIGR04308 repeat_SSSPR51: surface protein repeat SSSPR-51 98 151 9.7E-13 T 29-03-2018 IPR027579 Surface protein repeat SSSPR-51 CFE88_RS01655 0a3e925bfb8ec21385f1c4e25bb3e428 354 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 320 351 9.4E-4 T 29-03-2018 CFE88_RS03255 10eeefe124d53790d10de3b54e3e78fa 228 Gene3D G3DSA:3.40.50.1580 1 228 4.3E-53 T 29-03-2018 CFE88_RS03255 10eeefe124d53790d10de3b54e3e78fa 228 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 226 1.5E-84 T 29-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS03255 10eeefe124d53790d10de3b54e3e78fa 228 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 1 228 43.985 T 29-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS03255 10eeefe124d53790d10de3b54e3e78fa 228 SUPERFAMILY SSF53167 2 222 3.27E-70 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CFE88_RS03255 10eeefe124d53790d10de3b54e3e78fa 228 Pfam PF01048 Phosphorylase superfamily 2 225 2.0E-49 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CFE88_RS03295 a7fe3c4bcf025a9db9d515979b19f8de 239 Gene3D G3DSA:3.40.50.150 2 133 1.4E-17 T 29-03-2018 CFE88_RS03295 a7fe3c4bcf025a9db9d515979b19f8de 239 SUPERFAMILY SSF53335 3 239 5.38E-44 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS03295 a7fe3c4bcf025a9db9d515979b19f8de 239 Gene3D G3DSA:2.20.25.110 136 198 3.5E-19 T 29-03-2018 CFE88_RS03295 a7fe3c4bcf025a9db9d515979b19f8de 239 Pfam PF13649 Methyltransferase domain 39 128 4.2E-14 T 29-03-2018 CFE88_RS08210 cb96d708b28e9a9f18f57da3cdcd2d7c 422 Gene3D G3DSA:3.40.50.150 205 410 2.2E-4 T 29-03-2018 CFE88_RS08210 cb96d708b28e9a9f18f57da3cdcd2d7c 422 Pfam PF09861 Domain of unknown function (DUF2088) 7 207 3.8E-72 T 29-03-2018 IPR018657 LarA-like, N-terminal CFE88_RS11435 6d61acd5574e9e9b107322c3a1f8b03f 459 PIRSF PIRSF006060 1 459 5.9E-63 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS11435 6d61acd5574e9e9b107322c3a1f8b03f 459 Pfam PF00324 Amino acid permease 13 451 3.0E-103 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS05235 d006acc78900d1459d81b1524832adba 867 Pfam PF09586 Bacterial membrane protein YfhO 20 850 2.1E-138 T 29-03-2018 IPR018580 Uncharacterised protein family YfhO CFE88_RS09945 3b4c6322a62631d73e9c6395cc5402c5 259 Pfam PF04507 Csa1 family 1 257 1.7E-132 T 29-03-2018 IPR007595 Csa1 family CFE88_RS09945 3b4c6322a62631d73e9c6395cc5402c5 259 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 255 2.9E-107 T 29-03-2018 IPR007595 Csa1 family CFE88_RS10965 ad82588c7bcf12fb7e0ac59381e72d0c 102 Gene3D G3DSA:1.10.287.1060 3 94 7.2E-4 T 29-03-2018 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 Gene3D G3DSA:3.20.70.20 2 748 1.7E-298 T 29-03-2018 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 Pfam PF02901 Pyruvate formate lyase-like 22 607 2.5E-209 T 29-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 PIRSF PIRSF000379 7 748 0.0 T 29-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 10 748 0.0 T 29-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 SUPERFAMILY SSF51998 7 748 6.41E-290 T 29-03-2018 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 Pfam PF01228 Glycine radical 623 729 1.0E-42 T 29-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 CFE88_RS10350 22823de1bbf6903e41a676b7a1ee2557 748 ProSitePatterns PS00850 Glycine radical domain signature. 718 726 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS12145 1968e47819fa9413dda420580e319463 122 Pfam PF14729 Domain of unknown function with cystatin-like fold (DUF4467) 26 120 9.8E-37 T 29-03-2018 IPR028075 Domain of unknown function with cystatin-like fold DUF4467 CFE88_RS04420 c372eacacedf69d42baafccb67d8a6e5 329 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 101 244 5.0E-49 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS04420 c372eacacedf69d42baafccb67d8a6e5 329 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 101 244 7.4E-34 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 ProSitePatterns PS00194 Thioredoxin family active site. 21 39 - T 29-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 PIRSF PIRSF000077 1 104 4.7E-44 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 PRINTS PR00421 Thioredoxin family signature 28 37 2.5E-8 T 29-03-2018 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 PRINTS PR00421 Thioredoxin family signature 20 28 2.5E-8 T 29-03-2018 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 PRINTS PR00421 Thioredoxin family signature 68 79 2.5E-8 T 29-03-2018 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 Gene3D G3DSA:3.40.30.10 1 104 2.7E-36 T 29-03-2018 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 Pfam PF00085 Thioredoxin 3 103 3.7E-32 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 103 8.9E-39 T 29-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CFE88_RS05640 a43426cdc3264c9545f4455f30d7b0b4 104 SUPERFAMILY SSF52833 2 104 1.99E-38 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Pfam PF13193 AMP-binding enzyme C-terminal domain 383 455 3.1E-11 T 29-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 1 464 44.195 T 29-03-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Gene3D G3DSA:3.40.50.980 143 288 3.3E-34 T 29-03-2018 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Gene3D G3DSA:2.30.38.10 289 366 2.9E-15 T 29-03-2018 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Gene3D G3DSA:3.30.300.30 368 474 1.0E-22 T 29-03-2018 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Pfam PF00501 AMP-binding enzyme 5 373 5.6E-74 T 29-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 Gene3D G3DSA:3.40.50.980 1 142 1.9E-21 T 29-03-2018 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 SUPERFAMILY SSF56801 4 467 2.75E-110 T 29-03-2018 CFE88_RS02405 fec1f58bf51edeb4b644f5da642650cf 474 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 26 461 1.3E-169 T 29-03-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 CFE88_RS04815 3bcb924f9922b6d7c20c35e0e1680c6f 164 Gene3D G3DSA:1.10.10.10 75 164 5.5E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04815 3bcb924f9922b6d7c20c35e0e1680c6f 164 SUPERFAMILY SSF88659 104 159 8.37E-11 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS04815 3bcb924f9922b6d7c20c35e0e1680c6f 164 Pfam PF08281 Sigma-70, region 4 102 153 1.3E-11 T 29-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS01795 5b987201567dad594e4995c3313aebfe 100 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 7 94 5.9E-49 T 29-03-2018 IPR013368 TrpR homologue YerC/YecD CFE88_RS01795 5b987201567dad594e4995c3313aebfe 100 Pfam PF01371 Trp repressor protein 9 94 3.9E-34 T 29-03-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 CFE88_RS01795 5b987201567dad594e4995c3313aebfe 100 Gene3D G3DSA:1.10.1270.10 1 100 4.2E-34 T 29-03-2018 CFE88_RS01795 5b987201567dad594e4995c3313aebfe 100 PIRSF PIRSF012508 1 100 7.3E-47 T 29-03-2018 IPR013368 TrpR homologue YerC/YecD CFE88_RS01795 5b987201567dad594e4995c3313aebfe 100 SUPERFAMILY SSF48295 3 95 6.28E-31 T 29-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CFE88_RS01530 7d83937b80a618f5d36f4f005a6b5fca 538 SMART SM00534 351 536 4.5E-10 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS01530 7d83937b80a618f5d36f4f005a6b5fca 538 Gene3D G3DSA:3.40.50.300 316 538 7.7E-18 T 29-03-2018 CFE88_RS01530 7d83937b80a618f5d36f4f005a6b5fca 538 SUPERFAMILY SSF52540 316 535 1.63E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01530 7d83937b80a618f5d36f4f005a6b5fca 538 Gene3D G3DSA:1.10.1420.10 74 314 0.0038 T 29-03-2018 CFE88_RS01530 7d83937b80a618f5d36f4f005a6b5fca 538 Pfam PF00488 MutS domain V 355 537 5.5E-26 T 29-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 SUPERFAMILY SSF51735 1 223 1.5E-69 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 Gene3D G3DSA:3.40.50.720 5 228 6.9E-65 T 29-03-2018 CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 Pfam PF00106 short chain dehydrogenase 7 192 7.6E-59 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PIRSF PIRSF000126 1 227 2.5E-51 T 29-03-2018 CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 209 0.0031 T 29-03-2018 CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.3E-11 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 5.6E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.6E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.6E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.6E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11900 7a2412b0ddb3eec930663a85664fe436 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.6E-33 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 SUPERFAMILY SSF52922 203 338 9.16E-40 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 SUPERFAMILY SSF52518 4 218 4.55E-60 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 Gene3D G3DSA:3.40.50.920 209 339 1.3E-37 T 29-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 SMART SM00861 7 194 2.0E-55 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 Gene3D G3DSA:3.40.50.970 3 208 8.6E-62 T 29-03-2018 CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 Pfam PF02780 Transketolase, C-terminal domain 208 330 8.4E-40 T 29-03-2018 IPR033248 Transketolase, C-terminal domain CFE88_RS10555 01e169948c5efe043447419586ad37a6 346 Pfam PF02779 Transketolase, pyrimidine binding domain 6 193 7.4E-47 T 29-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CFE88_RS06800 2b062fa1f95cb2a97e65be08d25524de 124 Pfam PF03061 Thioesterase superfamily 34 111 3.7E-14 T 29-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CFE88_RS06800 2b062fa1f95cb2a97e65be08d25524de 124 SUPERFAMILY SSF54637 4 122 3.73E-27 T 29-03-2018 IPR029069 HotDog domain CFE88_RS06800 2b062fa1f95cb2a97e65be08d25524de 124 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 4 119 8.6E-32 T 29-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CFE88_RS06800 2b062fa1f95cb2a97e65be08d25524de 124 Gene3D G3DSA:3.10.129.10 2 123 4.6E-21 T 29-03-2018 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SUPERFAMILY SSF47819 515 589 2.11E-17 T 29-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SMART SM00490 240 321 5.7E-27 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Pfam PF16124 RecQ zinc-binding 334 395 7.8E-10 T 29-03-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Gene3D G3DSA:1.10.150.80 508 592 1.9E-19 T 29-03-2018 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 2 588 4.9E-254 T 29-03-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Pfam PF00270 DEAD/DEAH box helicase 17 179 6.3E-19 T 29-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Gene3D G3DSA:3.40.50.300 211 395 1.6E-48 T 29-03-2018 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Pfam PF09382 RQC domain 400 504 3.6E-22 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SUPERFAMILY SSF52540 54 340 4.64E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 6 453 8.9E-135 T 29-03-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SUPERFAMILY SSF46785 394 505 4.35E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SMART SM00956 403 503 2.2E-24 T 29-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Pfam PF00570 HRDC domain 520 586 3.5E-17 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SMART SM00341 516 593 1.2E-10 T 29-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Gene3D G3DSA:3.40.50.300 2 210 2.8E-32 T 29-03-2018 CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 SMART SM00487 11 204 4.5E-29 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Pfam PF00271 Helicase conserved C-terminal domain 222 320 1.1E-20 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS07590 e6b2dd91cc281ec8c8832d7e0d0015e9 593 Gene3D G3DSA:1.10.10.10 396 507 1.9E-23 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02235 b8bea219b647518dea808c68da14b29c 274 Pfam PF00849 RNA pseudouridylate synthase 83 229 8.4E-24 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS02235 b8bea219b647518dea808c68da14b29c 274 Gene3D G3DSA:3.30.2350.10 74 271 3.1E-48 T 29-03-2018 CFE88_RS02235 b8bea219b647518dea808c68da14b29c 274 SUPERFAMILY SSF55120 66 271 4.48E-51 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS08660 8494f370c141e3ce607cb7547ad64e00 335 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 51 243 1.9E-69 T 29-03-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 CFE88_RS08660 8494f370c141e3ce607cb7547ad64e00 335 Hamap MF_00602 Protein-arginine kinase [mcsB]. 11 335 35.426 T 29-03-2018 IPR023660 Protein arginine kinase GO:0006950|GO:0016775 CFE88_RS08660 8494f370c141e3ce607cb7547ad64e00 335 Gene3D G3DSA:3.30.590.10 3 245 1.7E-75 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CFE88_RS08660 8494f370c141e3ce607cb7547ad64e00 335 SUPERFAMILY SSF55931 3 262 1.63E-81 T 29-03-2018 CFE88_RS08660 8494f370c141e3ce607cb7547ad64e00 335 ProSitePatterns PS00112 Phosphagen kinase active site signature. 157 163 - T 29-03-2018 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 CFE88_RS09035 f481f82388f70a6350e6acfc0c9c1e23 370 Pfam PF07907 YibE/F-like protein 128 359 4.0E-65 T 29-03-2018 IPR012507 YibE/F-like CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 SUPERFAMILY SSF88697 1 70 8.45E-19 T 29-03-2018 IPR015947 PUA-like domain CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 Gene3D G3DSA:3.40.50.150 175 388 4.1E-26 T 29-03-2018 CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 Gene3D G3DSA:3.30.750.80 70 174 1.3E-24 T 29-03-2018 CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 SUPERFAMILY SSF53335 77 385 2.39E-60 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 Gene3D G3DSA:2.30.130.10 4 65 1.1E-15 T 29-03-2018 IPR002478 PUA domain GO:0003723 CFE88_RS05945 7e1cbc3b4364e9ae14a211fa7c3a6470 390 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 155 341 5.0E-25 T 29-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 CFE88_RS04990 d5ea8a9737e0f85e72d81231e9952ee3 205 Pfam PF05908 Poly-gamma-glutamate hydrolase 4 192 4.8E-65 T 29-03-2018 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS10605 e5990ead0a5bfd70a259cbe65c2b686c 498 SUPERFAMILY SSF51905 4 274 4.26E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10605 e5990ead0a5bfd70a259cbe65c2b686c 498 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 8 488 5.3E-192 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS10605 e5990ead0a5bfd70a259cbe65c2b686c 498 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 6 492 2.6E-218 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS10605 e5990ead0a5bfd70a259cbe65c2b686c 498 Gene3D G3DSA:3.50.50.60 1 401 3.6E-16 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10605 e5990ead0a5bfd70a259cbe65c2b686c 498 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 3 492 52.0 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 SUPERFAMILY SSF53927 3 139 1.25E-36 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 97 2.8E-18 T 29-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 PIRSF PIRSF006769 1 347 2.4E-98 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 Gene3D G3DSA:3.40.140.10 1 120 8.5E-28 T 29-03-2018 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 Pfam PF01872 RibD C-terminal domain 142 313 3.3E-41 T 29-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 48 86 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 5 335 2.3E-96 T 29-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 Gene3D G3DSA:3.40.430.10 121 344 7.3E-51 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CFE88_RS02505 543477c0def2e525eea5df31d04c3f49 347 SUPERFAMILY SSF53597 141 342 1.54E-46 T 29-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 CFE88_RS11040 bda6403fc9bb6454ae026d93df9688be 135 Pfam PF14414 A nuclease of the HNH/ENDO VII superfamily with conserved WHH 103 133 1.7E-9 T 29-03-2018 IPR032869 WHH domain-containing protein CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 Pfam PF00149 Calcineurin-like phosphoesterase 6 234 9.7E-6 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 ProSitePatterns PS00786 5'-nucleotidase signature 2. 86 97 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 SUPERFAMILY SSF56300 3 300 6.69E-64 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 Pfam PF02872 5'-nucleotidase, C-terminal domain 314 472 2.2E-28 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 SUPERFAMILY SSF55816 301 498 1.57E-42 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 181 198 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 2 20 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 447 466 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 243 263 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 217 240 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 PRINTS PR01607 Apyrase family signature 358 381 7.2E-25 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 Gene3D G3DSA:3.90.780.10 304 509 2.6E-39 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS10700 d07d8976738e2c9d4c8fca0c6f9e3ef4 511 Gene3D G3DSA:3.60.21.10 2 303 8.2E-56 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 124 7.2E-54 T 29-03-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 125 40.854 T 29-03-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 Pfam PF01597 Glycine cleavage H-protein 8 124 5.1E-49 T 29-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 SUPERFAMILY SSF51230 3 125 3.14E-46 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 Gene3D G3DSA:2.40.50.100 5 126 9.2E-50 T 29-03-2018 CFE88_RS07010 cfdc812703e746cbf5b4dd113c00f88c 126 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 29-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CFE88_RS10540 c05a78c368ebd67ff9dc020048e0ce4e 472 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 28 465 1.4E-131 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CFE88_RS10540 c05a78c368ebd67ff9dc020048e0ce4e 472 PIRSF PIRSF002457 2 472 1.2E-148 T 29-03-2018 IPR030676 Citrate carrier CitT-related CFE88_RS10540 c05a78c368ebd67ff9dc020048e0ce4e 472 Pfam PF00939 Sodium:sulfate symporter transmembrane region 7 471 1.3E-152 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CFE88_RS06105 b08602393c1fb51b3c293f7c8b5d51e3 394 Gene3D G3DSA:3.90.1150.10 269 386 3.0E-23 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS06105 b08602393c1fb51b3c293f7c8b5d51e3 394 Gene3D G3DSA:3.40.640.10 68 268 2.3E-50 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS06105 b08602393c1fb51b3c293f7c8b5d51e3 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 229 242 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CFE88_RS06105 b08602393c1fb51b3c293f7c8b5d51e3 394 SUPERFAMILY SSF53383 23 383 5.19E-103 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS06105 b08602393c1fb51b3c293f7c8b5d51e3 394 Pfam PF00155 Aminotransferase class I and II 29 377 1.1E-54 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 601 7.6E-226 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 SUPERFAMILY SSF53697 245 601 2.32E-93 T 29-03-2018 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 SUPERFAMILY SSF56235 2 234 2.14E-67 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Pfam PF13522 Glutamine amidotransferase domain 64 192 4.3E-22 T 29-03-2018 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Gene3D G3DSA:3.40.50.10490 454 599 2.0E-37 T 29-03-2018 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 601 38.391 T 29-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Gene3D G3DSA:3.60.20.10 2 239 2.5E-63 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Gene3D G3DSA:3.40.50.10490 240 453 2.0E-57 T 29-03-2018 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Pfam PF01380 SIS domain 289 412 4.3E-32 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS01010 ec57a985a898ada62670101670763f8f 601 Pfam PF01380 SIS domain 461 583 6.4E-15 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS09105 4c8e6c24f282ee7ae5ea123633114705 242 SUPERFAMILY SSF53474 164 241 9.56E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09105 4c8e6c24f282ee7ae5ea123633114705 242 SUPERFAMILY SSF53474 16 136 9.56E-33 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09105 4c8e6c24f282ee7ae5ea123633114705 242 Pfam PF12146 Serine aminopeptidase, S33 14 223 2.4E-12 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS09105 4c8e6c24f282ee7ae5ea123633114705 242 Gene3D G3DSA:3.40.50.1820 1 242 3.5E-28 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09105 4c8e6c24f282ee7ae5ea123633114705 242 PIRSF PIRSF017388 1 242 5.1E-80 T 29-03-2018 IPR012354 Esterase/lipase GO:0052689 CFE88_RS11810 fcfc82e316bde913029173d4494eb02c 233 Pfam PF04607 Region found in RelA / SpoT proteins 77 198 3.2E-36 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS11810 fcfc82e316bde913029173d4494eb02c 233 SUPERFAMILY SSF81301 40 231 2.29E-53 T 29-03-2018 CFE88_RS11810 fcfc82e316bde913029173d4494eb02c 233 Gene3D G3DSA:3.30.460.10 37 181 4.4E-34 T 29-03-2018 CFE88_RS11810 fcfc82e316bde913029173d4494eb02c 233 Gene3D G3DSA:1.10.287.860 183 230 9.1E-15 T 29-03-2018 CFE88_RS11810 fcfc82e316bde913029173d4494eb02c 233 SMART SM00954 77 200 3.9E-40 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS05890 e30665947e4e784ae131a9dfe3600340 564 Pfam PF05598 Transposase domain (DUF772) 49 117 1.6E-14 T 29-03-2018 IPR008490 Transposase InsH, N-terminal CFE88_RS05890 e30665947e4e784ae131a9dfe3600340 564 Pfam PF01609 Transposase DDE domain 264 515 8.8E-38 T 29-03-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS05890 e30665947e4e784ae131a9dfe3600340 564 Gene3D G3DSA:3.90.350.10 279 498 2.8E-7 T 29-03-2018 IPR014736 Transposase, Tn5-like, core CFE88_RS07990 1373cee672846cb69690170c9242b317 277 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 216 270 2.6E-22 T 29-03-2018 IPR019264 Domain of unknown function DUF2179 CFE88_RS07990 1373cee672846cb69690170c9242b317 277 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 7 210 7.3E-56 T 29-03-2018 IPR003740 Uncharacterised membrane protein YitT CFE88_RS07990 1373cee672846cb69690170c9242b317 277 PIRSF PIRSF006483 1 277 6.3E-78 T 29-03-2018 IPR003740 Uncharacterised membrane protein YitT CFE88_RS10450 0cf7f0dab2f7eaad03ed3aa44692c538 367 Gene3D G3DSA:1.20.1090.10 162 366 5.3E-31 T 29-03-2018 CFE88_RS10450 0cf7f0dab2f7eaad03ed3aa44692c538 367 PIRSF PIRSF000112 2 363 8.1E-91 T 29-03-2018 CFE88_RS10450 0cf7f0dab2f7eaad03ed3aa44692c538 367 SUPERFAMILY SSF56796 2 357 9.03E-80 T 29-03-2018 CFE88_RS10450 0cf7f0dab2f7eaad03ed3aa44692c538 367 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 350 6.8E-58 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CFE88_RS10450 0cf7f0dab2f7eaad03ed3aa44692c538 367 Gene3D G3DSA:3.40.50.1970 1 161 7.8E-29 T 29-03-2018 CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 Pfam PF07694 5TMR of 5TMR-LYT 16 174 5.0E-17 T 29-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 188 350 2.4E-40 T 29-03-2018 IPR000160 GGDEF domain CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 Pfam PF00990 Diguanylate cyclase, GGDEF domain 189 347 3.4E-35 T 29-03-2018 IPR000160 GGDEF domain CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 SUPERFAMILY SSF55073 193 350 8.63E-36 T 29-03-2018 IPR029787 Nucleotide cyclase CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 Gene3D G3DSA:3.30.70.270 179 352 1.1E-41 T 29-03-2018 CFE88_RS07455 31575f3b5608a9428418de4b548b15d7 356 SMART SM00267 177 351 7.2E-37 T 29-03-2018 IPR000160 GGDEF domain CFE88_RS12025 3866916a4cde5ee4c1c7c1a118419b6c 233 Pfam PF04172 LrgB-like family 17 230 1.0E-64 T 29-03-2018 IPR007300 CidB/LrgB family CFE88_RS12025 3866916a4cde5ee4c1c7c1a118419b6c 233 Hamap MF_01142 Antiholin-like protein LrgB [lrgB]. 4 233 30.922 T 29-03-2018 IPR024891 Antiholin-like protein LrgB CFE88_RS08045 21f72033a9831100283b46d27385a277 248 Pfam PF00005 ABC transporter 17 162 1.5E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS08045 21f72033a9831100283b46d27385a277 248 SMART SM00382 27 211 5.6E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS08045 21f72033a9831100283b46d27385a277 248 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS08045 21f72033a9831100283b46d27385a277 248 Gene3D G3DSA:3.40.50.300 1 241 5.0E-48 T 29-03-2018 CFE88_RS08045 21f72033a9831100283b46d27385a277 248 SUPERFAMILY SSF52540 2 208 3.09E-47 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 SUPERFAMILY SSF161098 13 199 9.38E-42 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 Gene3D G3DSA:3.40.190.10 385 502 9.0E-22 T 29-03-2018 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 Gene3D G3DSA:3.40.190.10 225 384 2.4E-33 T 29-03-2018 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 Gene3D G3DSA:1.10.3720.10 2 208 1.6E-31 T 29-03-2018 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 209 1.3E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 234 499 1.9E-61 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CFE88_RS07580 912670dfa7c024f9e802965b6bf41c64 504 SUPERFAMILY SSF53850 234 503 6.51E-70 T 29-03-2018 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 Gene3D G3DSA:1.10.132.20 74 183 1.5E-37 T 29-03-2018 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 Gene3D G3DSA:1.10.132.20 1 73 2.5E-11 T 29-03-2018 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 2 184 27.562 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 SUPERFAMILY SSF55194 2 182 1.57E-68 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 9 184 1.1E-71 T 29-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CFE88_RS05150 d607825c10b20b7d756f8fbf39675289 184 Pfam PF01765 Ribosome recycling factor 19 182 2.8E-62 T 29-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CFE88_RS01730 3f85ec20afe645320582d567877dc17b 105 Pfam PF08863 YolD-like protein 9 103 9.7E-24 T 29-03-2018 IPR014962 YolD-like protein CFE88_RS01320 993526cc5002c01a05a2e431b1e81613 290 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 1 252 28.097 T 29-03-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CFE88_RS01320 993526cc5002c01a05a2e431b1e81613 290 PRINTS PR00701 60kDa inner membrane protein signature 129 152 6.7E-7 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS01320 993526cc5002c01a05a2e431b1e81613 290 PRINTS PR00701 60kDa inner membrane protein signature 215 238 6.7E-7 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS01320 993526cc5002c01a05a2e431b1e81613 290 Pfam PF02096 60Kd inner membrane protein 56 248 1.8E-43 T 29-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 CFE88_RS01320 993526cc5002c01a05a2e431b1e81613 290 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 55 248 1.7E-47 T 29-03-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 SUPERFAMILY SSF82861 33 117 7.19E-16 T 29-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 SUPERFAMILY SSF50182 119 187 2.09E-12 T 29-03-2018 IPR010920 LSM domain CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 Gene3D G3DSA:3.30.70.100 189 283 1.1E-6 T 29-03-2018 CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 Pfam PF00924 Mechanosensitive ion channel 75 278 4.0E-40 T 29-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 SUPERFAMILY SSF82689 192 285 4.58E-6 T 29-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CFE88_RS09495 a6ad2f1c40f2574ddc9d64252c60f63a 291 Gene3D G3DSA:2.30.30.60 134 188 5.9E-13 T 29-03-2018 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 SUPERFAMILY SSF50249 2 125 2.84E-50 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Gene3D G3DSA:2.40.50.140 1 114 1.4E-48 T 29-03-2018 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 SMART SM01382 124 253 3.3E-93 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 276 7.9E-139 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 1.1E-56 T 29-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Gene3D G3DSA:4.10.950.10 197 275 6.8E-32 T 29-03-2018 IPR014726 Ribosomal protein L2, domain 3 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 49.167 T 29-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Gene3D G3DSA:2.30.30.30 119 195 5.4E-35 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 3.6E-34 T 29-03-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 PIRSF PIRSF002158 3 277 9.2E-101 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 SMART SM01383 42 118 2.4E-46 T 29-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 SUPERFAMILY SSF50104 126 272 5.24E-60 T 29-03-2018 IPR008991 Translation protein SH3-like domain CFE88_RS00630 64e786e2ada30dcee16f97a0b7dab1d7 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 29-03-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 242 41.641 T 29-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 SUPERFAMILY SSF100950 1 239 6.98E-83 T 29-03-2018 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 2 239 1.8E-72 T 29-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 16 227 3.7E-19 T 29-03-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 Gene3D G3DSA:3.40.50.1360 1 242 8.4E-67 T 29-03-2018 CFE88_RS08400 c82799d4efed6b05ec035c6299712e54 243 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 121 139 - T 29-03-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 SUPERFAMILY SSF51182 54 176 2.58E-25 T 29-03-2018 IPR011051 RmlC-like cupin domain CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 SUPERFAMILY SSF47413 1 67 3.38E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 Gene3D G3DSA:1.10.260.40 1 71 3.4E-20 T 29-03-2018 CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 Gene3D G3DSA:2.60.120.10 72 178 1.4E-14 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 Pfam PF01381 Helix-turn-helix 7 60 2.6E-14 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 SMART SM00530 6 61 1.3E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS05850 00c083abe4db646cfc5d33d299226e32 179 Pfam PF07883 Cupin domain 107 173 2.3E-9 T 29-03-2018 IPR013096 Cupin 2, conserved barrel CFE88_RS12660 8b1d2cf249a26f332c688b2ae8ea2516 175 SUPERFAMILY SSF55729 4 170 8.14E-34 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS12660 8b1d2cf249a26f332c688b2ae8ea2516 175 Gene3D G3DSA:3.40.630.30 2 175 2.8E-27 T 29-03-2018 CFE88_RS12660 8b1d2cf249a26f332c688b2ae8ea2516 175 Pfam PF13420 Acetyltransferase (GNAT) domain 8 163 3.4E-15 T 29-03-2018 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 377 1.3E-147 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 PIRSF PIRSF001434 1 381 2.7E-142 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 Gene3D G3DSA:3.90.1150.10 247 381 2.8E-46 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 Gene3D G3DSA:3.40.640.10 1 246 2.6E-56 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS09080 2465cac9a87eea945e974c92eb61c4fb 381 SUPERFAMILY SSF53383 8 378 3.4E-112 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09910 be5667d690fd576de8fb0136903bca3a 145 Pfam PF07252 Protein of unknown function (DUF1433) 36 124 7.2E-21 T 29-03-2018 IPR009881 Protein of unknown function DUF1433 CFE88_RS09910 be5667d690fd576de8fb0136903bca3a 145 Gene3D G3DSA:3.10.450.130 35 132 1.0E-20 T 29-03-2018 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 17 363 1.8E-153 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 Gene3D G3DSA:3.20.20.70 28 360 1.4E-41 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 18 360 71.638 T 29-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 Pfam PF13394 4Fe-4S single cluster domain 126 222 2.6E-6 T 29-03-2018 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 Pfam PF04055 Radical SAM superfamily 121 291 2.4E-18 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 PIRSF PIRSF006004 9 364 5.5E-138 T 29-03-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 CFE88_RS05355 84bd22d796088ee2fe0039b6370dafd0 364 SUPERFAMILY SSF102114 113 333 2.09E-16 T 29-03-2018 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 Gene3D G3DSA:3.40.50.300 26 268 2.2E-45 T 29-03-2018 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 SUPERFAMILY SSF54752 268 326 1.29E-22 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 6.2E-171 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 Gene3D G3DSA:3.30.250.10 269 326 1.1E-26 T 29-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 SMART SM00382 57 228 8.9E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 ProSitePatterns PS00321 recA signature. 213 221 - T 29-03-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 127 156 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 243 272 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 210 238 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 165 194 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 93 122 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 PRINTS PR00142 RecA protein signature 297 314 2.6E-85 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 Pfam PF00154 recA bacterial DNA recombination protein 7 268 1.7E-142 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 Hamap MF_00268 Protein RecA [recA]. 5 329 53.058 T 29-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CFE88_RS05020 33561deb513b6e93f968f2fe0282c29c 349 SUPERFAMILY SSF52540 3 267 5.18E-64 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05305 dec0299e3a7f567ad622f54ef3d1bbdf 203 Gene3D G3DSA:3.10.129.10 77 202 5.5E-14 T 29-03-2018 CFE88_RS05305 dec0299e3a7f567ad622f54ef3d1bbdf 203 SUPERFAMILY SSF54637 90 197 1.01E-17 T 29-03-2018 IPR029069 HotDog domain CFE88_RS05305 dec0299e3a7f567ad622f54ef3d1bbdf 203 PIRSF PIRSF037733 17 203 6.4E-79 T 29-03-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 CFE88_RS05305 dec0299e3a7f567ad622f54ef3d1bbdf 203 Gene3D G3DSA:1.10.10.10 7 76 1.4E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07780 7884312c2a5a0ffdac19b7d2f891ca5c 518 PIRSF PIRSF002457 9 518 6.0E-135 T 29-03-2018 IPR030676 Citrate carrier CitT-related CFE88_RS07780 7884312c2a5a0ffdac19b7d2f891ca5c 518 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 42 512 3.7E-78 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CFE88_RS07780 7884312c2a5a0ffdac19b7d2f891ca5c 518 Pfam PF00939 Sodium:sulfate symporter transmembrane region 29 517 1.8E-111 T 29-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CFE88_RS06220 a8f117c86363a7c4447e879d58b43adb 191 Pfam PF06338 ComK protein 7 158 2.3E-51 T 29-03-2018 IPR010461 Competence protein ComK GO:0030420 CFE88_RS06220 a8f117c86363a7c4447e879d58b43adb 191 PIRSF PIRSF011560 1 191 2.1E-74 T 29-03-2018 IPR010461 Competence protein ComK GO:0030420 CFE88_RS10780 dbedd51adb48440a588badf1e322c8e8 229 SMART SM00903 21 181 6.5E-4 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 CFE88_RS10780 dbedd51adb48440a588badf1e322c8e8 229 Pfam PF01613 Flavin reductase like domain 23 171 5.3E-16 T 29-03-2018 IPR002563 Flavin reductase like domain GO:0010181 CFE88_RS10780 dbedd51adb48440a588badf1e322c8e8 229 Gene3D G3DSA:2.30.110.10 3 205 6.8E-46 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS10780 dbedd51adb48440a588badf1e322c8e8 229 SUPERFAMILY SSF50475 10 204 3.43E-43 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS05565 7fd0f5cca97335d0dfcdd955beb163ab 146 Hamap MF_00824 Uncharacterized N-acetyltransferase . 1 146 37.748 T 29-03-2018 IPR017274 Putative N-acetyltransferase YlbP CFE88_RS05565 7fd0f5cca97335d0dfcdd955beb163ab 146 SUPERFAMILY SSF55729 36 135 3.96E-12 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS05565 7fd0f5cca97335d0dfcdd955beb163ab 146 Gene3D G3DSA:3.40.630.30 1 146 1.5E-18 T 29-03-2018 CFE88_RS05565 7fd0f5cca97335d0dfcdd955beb163ab 146 PIRSF PIRSF037732 1 146 6.6E-48 T 29-03-2018 IPR017274 Putative N-acetyltransferase YlbP CFE88_RS05565 7fd0f5cca97335d0dfcdd955beb163ab 146 Pfam PF13673 Acetyltransferase (GNAT) domain 22 133 1.2E-7 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS06590 ba2af075d2624e4bfdbef4c4c9d8ab5a 131 Pfam PF03960 ArsC family 6 113 1.3E-23 T 29-03-2018 IPR006660 Arsenate reductase-like CFE88_RS06590 ba2af075d2624e4bfdbef4c4c9d8ab5a 131 SUPERFAMILY SSF52833 1 129 1.17E-39 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS06590 ba2af075d2624e4bfdbef4c4c9d8ab5a 131 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 114 1.3E-36 T 29-03-2018 IPR006504 Transcriptional regulator Spx/MgsR CFE88_RS06590 ba2af075d2624e4bfdbef4c4c9d8ab5a 131 Gene3D G3DSA:3.40.30.10 1 131 1.9E-39 T 29-03-2018 CFE88_RS06590 ba2af075d2624e4bfdbef4c4c9d8ab5a 131 Hamap MF_01132 Regulatory protein Spx [spxA]. 1 131 37.373 T 29-03-2018 IPR023731 Regulatory protein Spx GO:0045892 CFE88_RS12065 d9c20510fe20238989e7c4643183af0e 609 Pfam PF13520 Amino acid permease 50 445 3.6E-33 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 58 76 - T 29-03-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 Gene3D G3DSA:1.10.10.10 1 114 1.2E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.6E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 67 2.6E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 84 99 2.6E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 51 2.6E-14 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 SMART SM00418 34 113 1.9E-22 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 Pfam PF01022 Bacterial regulatory protein, arsR family 41 85 1.4E-13 T 29-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CFE88_RS09165 1f08ba7967938b35220145999e57e4ef 115 SUPERFAMILY SSF46785 20 109 3.83E-18 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 Pfam PF00005 ABC transporter 21 169 1.8E-34 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 Pfam PF09383 NIL domain 268 339 5.3E-8 T 29-03-2018 IPR018449 NIL domain CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 SUPERFAMILY SSF55021 253 340 1.26E-12 T 29-03-2018 CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 SMART SM00930 264 340 6.0E-9 T 29-03-2018 IPR018449 NIL domain CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 Gene3D G3DSA:3.30.70.260 263 341 3.5E-9 T 29-03-2018 CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 SMART SM00382 30 218 1.2E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 Gene3D G3DSA:3.40.50.300 1 262 1.8E-75 T 29-03-2018 CFE88_RS09075 e0d3b8410deddc80aca351713ebd49cf 341 SUPERFAMILY SSF52540 1 240 4.32E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01285 c2c4017de721c68ee0b46c7af4d254b4 146 Pfam PF14183 YwpF-like protein 2 131 1.9E-46 T 29-03-2018 IPR025573 YwpF-like protein CFE88_RS02420 b232e58a66f73270cf2165719b8867c2 158 ProSitePatterns PS00893 Nudix box signature. 55 76 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CFE88_RS02420 b232e58a66f73270cf2165719b8867c2 158 Pfam PF00293 NUDIX domain 29 101 2.7E-11 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CFE88_RS02420 b232e58a66f73270cf2165719b8867c2 158 Gene3D G3DSA:3.90.79.10 7 118 4.7E-14 T 29-03-2018 CFE88_RS02420 b232e58a66f73270cf2165719b8867c2 158 TIGRFAM TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD 5 158 3.1E-66 T 29-03-2018 IPR014078 Nucleoside triphosphatase YtkD MetaCyc: PWY-6502 CFE88_RS02420 b232e58a66f73270cf2165719b8867c2 158 SUPERFAMILY SSF55811 30 119 1.16E-15 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS03200 5522da3bc48b944c272d7977ad7fe629 211 Gene3D G3DSA:3.40.50.150 1 211 3.9E-35 T 29-03-2018 CFE88_RS03200 5522da3bc48b944c272d7977ad7fe629 211 Pfam PF01596 O-methyltransferase 41 207 4.0E-31 T 29-03-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 CFE88_RS03200 5522da3bc48b944c272d7977ad7fe629 211 SUPERFAMILY SSF53335 5 207 1.2E-39 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS11645 5960d9694f7fd0a94782fd4ab0fa51a4 134 Pfam PF05025 RbsD / FucU transport protein family 1 133 3.3E-39 T 29-03-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CFE88_RS11645 5960d9694f7fd0a94782fd4ab0fa51a4 134 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 134 28.535 T 29-03-2018 IPR023064 D-ribose pyranase GO:0016872 CFE88_RS11645 5960d9694f7fd0a94782fd4ab0fa51a4 134 SUPERFAMILY SSF102546 1 134 2.62E-37 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CFE88_RS11645 5960d9694f7fd0a94782fd4ab0fa51a4 134 Gene3D G3DSA:3.40.1650.10 2 134 7.4E-27 T 29-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CFE88_RS11115 d358f66dfdb058dcd52f51ba9eaef49f 514 Pfam PF13460 NAD(P)H-binding 8 113 1.1E-13 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11115 d358f66dfdb058dcd52f51ba9eaef49f 514 SUPERFAMILY SSF51735 1 263 1.34E-43 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11115 d358f66dfdb058dcd52f51ba9eaef49f 514 Gene3D G3DSA:3.40.50.720 1 317 1.7E-27 T 29-03-2018 CFE88_RS12015 7c455473cc67a948ee44acee121286bd 297 Gene3D G3DSA:3.40.190.10 5 166 4.0E-25 T 29-03-2018 CFE88_RS12015 7c455473cc67a948ee44acee121286bd 297 SUPERFAMILY SSF53850 17 288 3.59E-62 T 29-03-2018 CFE88_RS12015 7c455473cc67a948ee44acee121286bd 297 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 17 285 2.7E-52 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CFE88_RS12015 7c455473cc67a948ee44acee121286bd 297 Gene3D G3DSA:3.40.190.10 167 289 4.6E-24 T 29-03-2018 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 Gene3D G3DSA:3.30.70.660 105 242 2.9E-36 T 29-03-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 34.046 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 Gene3D G3DSA:3.30.70.580 1 104 2.8E-29 T 29-03-2018 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 Pfam PF01416 tRNA pseudouridine synthase 8 103 1.9E-8 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 Pfam PF01416 tRNA pseudouridine synthase 142 240 4.8E-28 T 29-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 1.3E-66 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 PIRSF PIRSF001430 1 259 1.6E-76 T 29-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS00770 99d6cce774fee6646dab11c72c539dbe 267 SUPERFAMILY SSF55120 2 246 5.18E-78 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 Gene3D G3DSA:3.30.565.10 114 330 9.0E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 SMART SM00387 222 332 1.2E-21 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 223 331 1.0E-17 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 SUPERFAMILY SSF55874 168 330 5.76E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 276 286 3.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 310 3.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 258 272 3.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07950 f66ff14bc3173a90ab8a5595e57f838a 346 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 329 3.4E-8 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 Pfam PF02574 Homocysteine S-methyltransferase 13 282 2.4E-55 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 Gene3D G3DSA:3.20.20.220 317 610 2.6E-61 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 SUPERFAMILY SSF82282 2 362 2.49E-99 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 Pfam PF02219 Methylenetetrahydrofolate reductase 320 575 1.0E-25 T 29-03-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 SUPERFAMILY SSF51730 317 600 8.44E-64 T 29-03-2018 IPR029041 FAD-linked oxidoreductase-like CFE88_RS09520 997a70fe8c4ad5845659a02c5b07e07a 612 Gene3D G3DSA:3.20.20.330 1 316 4.4E-83 T 29-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CFE88_RS06440 040c01d4ebceb0892c75e0d63c459416 122 SUPERFAMILY SSF51735 3 113 1.06E-31 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS06440 040c01d4ebceb0892c75e0d63c459416 122 Gene3D G3DSA:3.40.50.720 1 122 5.4E-35 T 29-03-2018 CFE88_RS06440 040c01d4ebceb0892c75e0d63c459416 122 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 3 116 2.4E-33 T 29-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06440 040c01d4ebceb0892c75e0d63c459416 122 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 96 122 6.4E-14 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS06440 040c01d4ebceb0892c75e0d63c459416 122 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 72 85 6.4E-14 T 29-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CFE88_RS05535 0b95f038eeea5392736d0feee8e1b292 321 ProSitePatterns PS01347 MraY family signature 1. 44 56 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS05535 0b95f038eeea5392736d0feee8e1b292 321 ProSitePatterns PS01348 MraY family signature 2. 166 177 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS05535 0b95f038eeea5392736d0feee8e1b292 321 Pfam PF00953 Glycosyl transferase family 4 77 246 1.1E-39 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 CFE88_RS05535 0b95f038eeea5392736d0feee8e1b292 321 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 14 316 1.4E-104 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS05535 0b95f038eeea5392736d0feee8e1b292 321 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 1 320 23.987 T 29-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 Gene3D G3DSA:2.60.120.320 116 211 3.6E-21 T 29-03-2018 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 142 203 2.6E-15 T 29-03-2018 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 4 207 2.0E-64 T 29-03-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 25 123 3.7E-17 T 29-03-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 Gene3D G3DSA:3.40.50.10240 2 115 7.1E-19 T 29-03-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 SUPERFAMILY SSF63999 3 129 3.27E-31 T 29-03-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 SUPERFAMILY SSF63862 131 210 1.57E-17 T 29-03-2018 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05330 3a137b718b3bdfe56e19209510d64323 211 SMART SM00983 140 205 1.3E-23 T 29-03-2018 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Gene3D G3DSA:3.30.930.10 11 456 1.1E-94 T 29-03-2018 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 SUPERFAMILY SSF55681 9 237 2.39E-99 T 29-03-2018 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 SUPERFAMILY SSF55681 403 473 2.39E-99 T 29-03-2018 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Gene3D G3DSA:3.40.50.800 457 567 7.1E-27 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 SUPERFAMILY SSF55826 218 385 1.57E-33 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 560 5.4E-229 T 29-03-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Pfam PF03129 Anticodon binding domain 474 561 3.3E-15 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.9E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.9E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.9E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.9E-19 T 29-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 1.6E-54 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 564 40.032 T 29-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 SUPERFAMILY SSF52954 459 566 3.44E-26 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS05130 7fa2b99e36f4af5e570542c00a2b7dd1 567 Pfam PF04073 Aminoacyl-tRNA editing domain 257 374 1.3E-26 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 6 295 3.6E-118 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 88 3.2E-23 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 295 58.036 T 29-03-2018 IPR023009 Tyrosine recombinase XerC/XerD CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 SUPERFAMILY SSF56349 3 288 2.44E-61 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Gene3D G3DSA:1.10.150.130 1 109 7.0E-20 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Pfam PF00589 Phage integrase family 110 281 1.4E-52 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 295 60.955 T 29-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CFE88_RS03775 d55a8118a41afad8e4f3fc7c0a539e99 295 Gene3D G3DSA:1.10.443.10 110 289 5.7E-49 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS06570 d46da183a8f62ca5a3f8c18e080b9401 199 Pfam PF01797 Transposase IS200 like 52 169 2.3E-37 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06570 d46da183a8f62ca5a3f8c18e080b9401 199 Gene3D G3DSA:3.30.70.1290 42 173 3.6E-23 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06570 d46da183a8f62ca5a3f8c18e080b9401 199 SMART SM01321 51 169 1.2E-39 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06570 d46da183a8f62ca5a3f8c18e080b9401 199 SUPERFAMILY SSF143422 43 169 5.1E-46 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06565 d46da183a8f62ca5a3f8c18e080b9401 199 Pfam PF01797 Transposase IS200 like 52 169 2.3E-37 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06565 d46da183a8f62ca5a3f8c18e080b9401 199 Gene3D G3DSA:3.30.70.1290 42 173 3.6E-23 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06565 d46da183a8f62ca5a3f8c18e080b9401 199 SMART SM01321 51 169 1.2E-39 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06565 d46da183a8f62ca5a3f8c18e080b9401 199 SUPERFAMILY SSF143422 43 169 5.1E-46 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 SUPERFAMILY SSF56059 103 317 1.75E-52 T 29-03-2018 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 SMART SM01210 322 411 6.2E-34 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Gene3D G3DSA:3.90.600.10 322 411 4.9E-25 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 411 37.293 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 SMART SM01209 102 290 4.7E-111 T 29-03-2018 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 102 290 3.2E-66 T 29-03-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 SUPERFAMILY SSF52440 2 102 1.58E-31 T 29-03-2018 IPR016185 Pre-ATP-grasp domain CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Gene3D G3DSA:3.30.1490.20 86 182 4.5E-22 T 29-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 SUPERFAMILY SSF51246 321 411 5.1E-24 T 29-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Gene3D G3DSA:3.30.470.20 185 321 3.8E-51 T 29-03-2018 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 324 409 2.5E-23 T 29-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 411 5.1E-138 T 29-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Gene3D G3DSA:3.40.50.20 2 85 1.4E-31 T 29-03-2018 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 101 2.0E-31 T 29-03-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS05980 bec1d3fde3a74431bcde3762ffbce111 413 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 284 291 - T 29-03-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CFE88_RS08020 7e1b0891bf0b7f4dd754712545497feb 270 Pfam PF01061 ABC-2 type transporter 17 227 1.0E-13 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CFE88_RS06770 3be67493872e2cdbd8f7998d99849158 115 TIGRFAM TIGR00941 2a6301s03: multicomponent Na+:H+ antiporter, MnhC subunit 2 104 4.7E-50 T 29-03-2018 IPR006673 Mnh complex subunit C1 GO:0006812|GO:0008324 CFE88_RS06770 3be67493872e2cdbd8f7998d99849158 115 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 106 1.2E-31 T 29-03-2018 CFE88_RS01325 98eb70a5c48949b611afd98a8125dc7a 217 SUPERFAMILY SSF109604 1 214 2.57E-73 T 29-03-2018 CFE88_RS01325 98eb70a5c48949b611afd98a8125dc7a 217 SMART SM00471 22 137 9.8E-5 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS01325 98eb70a5c48949b611afd98a8125dc7a 217 Gene3D G3DSA:1.10.3210.10 4 215 1.1E-17 T 29-03-2018 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 SUPERFAMILY SSF53697 5 442 3.76E-138 T 29-03-2018 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 Pfam PF00342 Phosphoglucose isomerase 76 421 8.0E-22 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 Gene3D G3DSA:3.40.50.10490 1 60 6.9E-9 T 29-03-2018 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 197 210 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 403 420 - T 29-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 193 211 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 403 416 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 76 95 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 371 389 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 268 289 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 PRINTS PR00662 Glucose-6-phosphate isomerase signature 389 403 1.5E-23 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 1 430 25.18 T 29-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 Gene3D G3DSA:3.40.50.10490 203 429 1.3E-74 T 29-03-2018 CFE88_RS06710 b707fa3666e13e0a54099bbb4e7da61d 443 Gene3D G3DSA:3.40.50.10490 61 202 5.5E-44 T 29-03-2018 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 SMART SM00448 1 120 1.4E-14 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 SUPERFAMILY SSF52172 1 134 2.28E-14 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 Pfam PF04397 LytTr DNA-binding domain 151 237 2.2E-19 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 SMART SM00850 149 237 2.2E-11 T 29-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 Gene3D G3DSA:3.40.50.2300 1 136 3.3E-16 T 29-03-2018 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 Gene3D G3DSA:2.40.50.40 139 208 2.5E-14 T 29-03-2018 CFE88_RS01585 b133aa12a5d7bfa65dd06a2dfc690331 238 Pfam PF00072 Response regulator receiver domain 3 120 2.2E-21 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS06155 6997909493dfcf4db8536fde7426fbaa 185 Pfam PF00583 Acetyltransferase (GNAT) family 53 164 1.5E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS06155 6997909493dfcf4db8536fde7426fbaa 185 Gene3D G3DSA:3.40.630.30 1 183 2.0E-29 T 29-03-2018 CFE88_RS06155 6997909493dfcf4db8536fde7426fbaa 185 SUPERFAMILY SSF55729 2 182 1.65E-27 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 SUPERFAMILY SSF52172 3 130 2.56E-32 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 SMART SM00421 145 202 2.1E-25 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 Gene3D G3DSA:3.40.50.2300 2 127 3.0E-32 T 29-03-2018 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 SMART SM00448 3 116 1.2E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 4.2E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 4.2E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 4.2E-14 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 4.8E-20 T 29-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 SUPERFAMILY SSF46894 132 208 9.52E-24 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 Gene3D G3DSA:1.10.10.10 128 209 6.2E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01910 02f82cf9af2a491b58f4e5d8c31168a9 209 Pfam PF00072 Response regulator receiver domain 5 116 2.0E-26 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS11675 332eec3e238eef8a8bb2983e61d2e116 299 Gene3D G3DSA:1.10.4100.10 31 262 1.7E-26 T 29-03-2018 CFE88_RS11675 332eec3e238eef8a8bb2983e61d2e116 299 Pfam PF03313 Serine dehydratase alpha chain 15 276 8.0E-69 T 29-03-2018 IPR005130 Serine dehydratase-like, alpha subunit CFE88_RS11675 332eec3e238eef8a8bb2983e61d2e116 299 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 1 293 7.7E-113 T 29-03-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CFE88_RS07715 e0d532b59661fa447c26f4caee52ee40 126 SUPERFAMILY SSF46785 37 124 4.47E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07715 e0d532b59661fa447c26f4caee52ee40 126 Gene3D G3DSA:1.10.10.10 44 122 1.2E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07715 e0d532b59661fa447c26f4caee52ee40 126 Pfam PF01638 HxlR-like helix-turn-helix 46 124 2.1E-23 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 Pfam PF07690 Major Facilitator Superfamily 9 344 1.3E-49 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 SUPERFAMILY SSF103473 3 377 1.29E-64 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 Gene3D G3DSA:1.20.1250.20 2 187 3.6E-35 T 29-03-2018 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 Gene3D G3DSA:1.20.1250.20 192 386 7.3E-20 T 29-03-2018 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 PRINTS PR01035 Tetracycline resistance protein signature 328 351 1.2E-23 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 PRINTS PR01035 Tetracycline resistance protein signature 240 260 1.2E-23 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 PRINTS PR01035 Tetracycline resistance protein signature 14 30 1.2E-23 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 PRINTS PR01035 Tetracycline resistance protein signature 129 151 1.2E-23 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS07760 cdf81aba12559097dd147fd82954968e 387 PRINTS PR01035 Tetracycline resistance protein signature 157 177 1.2E-23 T 29-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 PRINTS PR00419 Adrenodoxin reductase family signature 177 190 7.1E-22 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 PRINTS PR00419 Adrenodoxin reductase family signature 219 229 7.1E-22 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 PRINTS PR00419 Adrenodoxin reductase family signature 154 176 7.1E-22 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 7.1E-22 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 SUPERFAMILY SSF51971 153 416 1.12E-55 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Gene3D G3DSA:3.50.50.60 248 334 1.5E-20 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 SUPERFAMILY SSF46548 6 163 5.23E-30 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 SUPERFAMILY SSF51971 389 483 1.53E-9 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Gene3D G3DSA:3.50.50.60 335 483 1.3E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 140 1.2E-23 T 29-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 5 483 3.1E-181 T 29-03-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Gene3D G3DSA:3.40.50.720 153 247 2.1E-18 T 29-03-2018 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 154 470 2.3E-26 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS09020 4d2474e21903a8847ac162cd0d6cd336 487 Gene3D G3DSA:1.10.1060.10 4 152 1.0E-38 T 29-03-2018 CFE88_RS09490 1559e4b2150fb032ed9a54073f4ce6d4 71 Pfam PF06107 Bacterial protein of unknown function (DUF951) 5 58 2.1E-28 T 29-03-2018 IPR009296 Protein of unknown function DUF951 CFE88_RS09490 1559e4b2150fb032ed9a54073f4ce6d4 71 PIRSF PIRSF037263 1 65 4.4E-34 T 29-03-2018 IPR009296 Protein of unknown function DUF951 CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 Gene3D G3DSA:3.40.50.720 113 288 1.8E-53 T 29-03-2018 CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 SUPERFAMILY SSF51735 99 285 2.85E-56 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 SUPERFAMILY SSF52283 1 137 1.21E-33 T 29-03-2018 CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 317 8.9E-32 T 29-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 Gene3D G3DSA:3.40.50.720 1 112 1.4E-31 T 29-03-2018 CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 29-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CFE88_RS00355 13ffeea1a0835c29a01820e81d9c2d8c 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 285 1.1E-59 T 29-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CFE88_RS10310 c4d60c1e9deacaedde383d7c9d95d2f3 271 Gene3D G3DSA:3.40.50.150 2 263 1.2E-19 T 29-03-2018 CFE88_RS11325 5518bb1dd86b66d2916a907ed7f9baa7 296 Gene3D G3DSA:3.20.20.70 1 293 2.4E-70 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11325 5518bb1dd86b66d2916a907ed7f9baa7 296 Hamap MF_00729 Fructose-bisphosphate aldolase class 1 [fda]. 2 293 52.501 T 29-03-2018 IPR023014 Fructose-bisphosphate aldolase class I, Gram positive bacteria-type GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CFE88_RS11325 5518bb1dd86b66d2916a907ed7f9baa7 296 SUPERFAMILY SSF51569 4 294 4.4E-93 T 29-03-2018 CFE88_RS11325 5518bb1dd86b66d2916a907ed7f9baa7 296 Pfam PF00274 Fructose-bisphosphate aldolase class-I 10 207 1.3E-12 T 29-03-2018 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS10750 3a584ef5f90fb1d279a4bcf7c2bc474e 502 Hamap MF_01472 Glycosyltransferase Gtf1 [gtf1]. 2 501 47.149 T 29-03-2018 IPR014267 Glycosyltransferase Gtf1 GO:0016757 CFE88_RS10750 3a584ef5f90fb1d279a4bcf7c2bc474e 502 SUPERFAMILY SSF53756 162 500 1.36E-34 T 29-03-2018 CFE88_RS10750 3a584ef5f90fb1d279a4bcf7c2bc474e 502 TIGRFAM TIGR02918 TIGR02918: accessory Sec system glycosylation protein GtfA 1 499 1.4E-261 T 29-03-2018 IPR014267 Glycosyltransferase Gtf1 GO:0016757 CFE88_RS10750 3a584ef5f90fb1d279a4bcf7c2bc474e 502 Gene3D G3DSA:3.40.50.2000 307 482 2.8E-22 T 29-03-2018 CFE88_RS10750 3a584ef5f90fb1d279a4bcf7c2bc474e 502 Pfam PF00534 Glycosyl transferases group 1 315 451 1.0E-21 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS01955 5b460d8bfac86ec1dbecda0979d4b260 172 Gene3D G3DSA:3.40.50.880 1 172 6.1E-42 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01955 5b460d8bfac86ec1dbecda0979d4b260 172 Pfam PF01965 DJ-1/PfpI family 3 168 3.8E-54 T 29-03-2018 IPR002818 DJ-1/PfpI CFE88_RS01955 5b460d8bfac86ec1dbecda0979d4b260 172 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 171 8.6E-48 T 29-03-2018 IPR006286 Peptidase C56, PfpI CFE88_RS01955 5b460d8bfac86ec1dbecda0979d4b260 172 SUPERFAMILY SSF52317 1 170 7.25E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS08845 26f5ccfe6d82766f88bc6eff821b15e8 513 Pfam PF01943 Polysaccharide biosynthesis protein 10 295 5.7E-26 T 29-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CFE88_RS08845 26f5ccfe6d82766f88bc6eff821b15e8 513 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 347 488 5.4E-19 T 29-03-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CFE88_RS00370 d45de158910716495d2563c9094376c1 157 Pfam PF05257 CHAP domain 52 130 4.4E-15 T 29-03-2018 IPR007921 CHAP domain CFE88_RS00370 d45de158910716495d2563c9094376c1 157 SUPERFAMILY SSF54001 28 154 7.55E-21 T 29-03-2018 CFE88_RS03385 266fc58de38cd1ee301213c52f21df53 329 Gene3D G3DSA:1.10.287.40 188 288 8.2E-4 T 29-03-2018 CFE88_RS03385 266fc58de38cd1ee301213c52f21df53 329 Pfam PF12127 SigmaW regulon antibacterial 7 318 2.6E-162 T 29-03-2018 IPR022853 Uncharacterised protein family YdfA-immunity CFE88_RS03385 266fc58de38cd1ee301213c52f21df53 329 Hamap MF_01562 UPF0365 protein . 1 321 47.639 T 29-03-2018 IPR022853 Uncharacterised protein family YdfA-immunity CFE88_RS00785 5d119835bc33949f3134e870e0c5944a 245 Gene3D G3DSA:3.40.50.1220 1 243 3.9E-62 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS00785 5d119835bc33949f3134e870e0c5944a 245 Pfam PF02146 Sir2 family 24 199 1.9E-55 T 29-03-2018 IPR003000 Sirtuin family GO:0070403 CFE88_RS00785 5d119835bc33949f3134e870e0c5944a 245 SUPERFAMILY SSF52467 4 241 1.47E-78 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS00785 5d119835bc33949f3134e870e0c5944a 245 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 8 242 62.728 T 29-03-2018 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 556 6.4E-238 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 SUPERFAMILY SSF52016 376 556 5.65E-61 T 29-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 SUPERFAMILY SSF143975 1 375 1.22E-132 T 29-03-2018 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 464 475 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 Gene3D G3DSA:3.40.50.2300 36 259 2.4E-5 T 29-03-2018 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 121 131 - T 29-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 556 45.676 T 29-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CFE88_RS01505 4eea74613cfe702a18dd99e748a71bd0 562 Pfam PF00920 Dehydratase family 33 552 4.0E-221 T 29-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CFE88_RS12600 e9f4dce5c144ede08f3e064752165db5 585 Pfam PF05569 BlaR1 peptidase M56 4 298 6.0E-92 T 29-03-2018 IPR008756 Peptidase M56 CFE88_RS12600 e9f4dce5c144ede08f3e064752165db5 585 Gene3D G3DSA:3.30.2010.10 146 219 5.6E-4 T 29-03-2018 CFE88_RS12600 e9f4dce5c144ede08f3e064752165db5 585 Pfam PF00905 Penicillin binding protein transpeptidase domain 362 577 4.8E-40 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CFE88_RS12600 e9f4dce5c144ede08f3e064752165db5 585 SUPERFAMILY SSF56601 348 579 1.42E-29 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS12600 e9f4dce5c144ede08f3e064752165db5 585 Gene3D G3DSA:3.40.710.10 341 582 2.4E-24 T 29-03-2018 CFE88_RS10735 b3679f86c3da60677dd19a1529fbb91c 430 TIGRFAM TIGR03712 acc_sec_asp2: accessory Sec system protein Asp2 3 425 9.3E-216 T 29-03-2018 IPR022267 Accessory Sec system protein Asp2 GO:0015031 CFE88_RS10735 b3679f86c3da60677dd19a1529fbb91c 430 Pfam PF16929 Accessory Sec system GspB-transporter 3 424 2.2E-197 T 29-03-2018 IPR022267 Accessory Sec system protein Asp2 GO:0015031 CFE88_RS10735 b3679f86c3da60677dd19a1529fbb91c 430 Gene3D G3DSA:3.40.50.1820 17 401 1.6E-5 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10735 b3679f86c3da60677dd19a1529fbb91c 430 SUPERFAMILY SSF53474 186 349 5.27E-9 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS05545 cdb9904200777ae1e2fff596bcd59da0 133 Pfam PF04977 Septum formation initiator 51 125 2.7E-13 T 29-03-2018 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 CFE88_RS05545 cdb9904200777ae1e2fff596bcd59da0 133 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 44 127 5.5E-23 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 CFE88_RS05545 cdb9904200777ae1e2fff596bcd59da0 133 Hamap MF_00910 Cell division protein FtsL [ftsL]. 44 126 13.886 T 29-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 CFE88_RS12030 c44c74b888278c95fda2bd10cc966fd3 152 Hamap MF_01141 Antiholin-like protein LrgA [lrgA]. 17 152 29.622 T 29-03-2018 IPR023736 Antiholin-like protein LrgA CFE88_RS12030 c44c74b888278c95fda2bd10cc966fd3 152 Pfam PF03788 LrgA family 37 128 6.4E-24 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 SMART SM00382 32 223 4.8E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 278 1.8E-110 T 29-03-2018 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 Gene3D G3DSA:3.40.50.300 1 261 8.3E-64 T 29-03-2018 CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 Pfam PF00005 ABC transporter 24 174 1.1E-29 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS00760 05aea6924120dc0ecd459546159ab1d2 286 SUPERFAMILY SSF52540 3 237 2.61E-56 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11785 ad03f3033c79d145b0b115c719b76caf 199 Pfam PF02581 Thiamine monophosphate synthase 30 178 1.9E-21 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS11785 ad03f3033c79d145b0b115c719b76caf 199 Gene3D G3DSA:3.20.20.70 7 194 2.5E-13 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11785 ad03f3033c79d145b0b115c719b76caf 199 SUPERFAMILY SSF51391 41 184 8.11E-30 T 29-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 4 174 30.629 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 SUPERFAMILY SSF54364 9 82 1.31E-29 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 87 171 9.4E-39 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 ProSitePatterns PS00938 Initiation factor 3 signature. 62 75 - T 29-03-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 Gene3D G3DSA:3.30.110.10 83 175 8.4E-36 T 29-03-2018 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 11 79 4.9E-31 T 29-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 11 172 4.4E-70 T 29-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 SUPERFAMILY SSF55200 86 175 2.62E-33 T 29-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CFE88_RS02910 c591a492b8871ece7a49a30abdce663a 175 Gene3D G3DSA:3.10.20.80 6 82 4.4E-31 T 29-03-2018 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 ProSitePatterns PS00211 ABC transporters family signature. 459 473 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 Pfam PF00005 ABC transporter 347 487 7.6E-30 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 SUPERFAMILY SSF52540 320 556 3.06E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 11 515 2.2E-100 T 29-03-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 Gene3D G3DSA:1.20.1560.10 4 310 9.9E-23 T 29-03-2018 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 Pfam PF00664 ABC transporter transmembrane region 13 282 3.9E-14 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 SMART SM00382 356 532 2.9E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 Gene3D G3DSA:3.40.50.300 314 562 8.7E-62 T 29-03-2018 CFE88_RS07810 07ad62922b5e1e67bab5efcb7bb2b088 564 SUPERFAMILY SSF90123 13 295 7.06E-38 T 29-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Pfam PF09371 Tex-like protein N-terminal domain 10 191 2.1E-62 T 29-03-2018 IPR018974 Tex-like protein, N-terminal CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SMART SM00732 315 413 8.4E-31 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Gene3D G3DSA:1.10.10.650 2 101 1.5E-30 T 29-03-2018 IPR023319 Tex-like protein, HTH domain CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Pfam PF00575 S1 RNA binding domain 641 711 4.7E-16 T 29-03-2018 IPR003029 S1 domain GO:0003676 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SMART SM00316 641 712 1.3E-22 T 29-03-2018 IPR022967 RNA-binding domain, S1 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SUPERFAMILY SSF53098 311 458 2.73E-48 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SUPERFAMILY SSF50249 629 711 5.08E-23 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Gene3D G3DSA:1.10.3500.10 102 343 6.3E-82 T 29-03-2018 IPR023323 Tex-like domain CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Pfam PF12836 Helix-hairpin-helix motif 480 544 3.2E-24 T 29-03-2018 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SUPERFAMILY SSF158832 3 310 2.09E-107 T 29-03-2018 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Gene3D G3DSA:1.10.150.310 488 622 1.3E-43 T 29-03-2018 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SUPERFAMILY SSF47781 549 624 4.0E-17 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Pfam PF16921 Tex protein YqgF-like domain 315 440 2.4E-53 T 29-03-2018 IPR032639 Tex protein, YqgF-like domain CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Gene3D G3DSA:2.40.50.140 632 716 3.4E-23 T 29-03-2018 CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 SUPERFAMILY SSF47781 459 545 3.22E-25 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS01425 98d7404363559b5a4a424bb6c771955e 716 Gene3D G3DSA:1.10.3500.10 344 487 1.0E-39 T 29-03-2018 IPR023323 Tex-like domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Pfam PF05257 CHAP domain 217 299 2.0E-14 T 29-03-2018 IPR007921 CHAP domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SMART SM00257 148 191 8.1E-18 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SMART SM00257 85 128 1.4E-18 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SMART SM00257 28 71 2.8E-16 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Pfam PF01476 LysM domain 29 70 1.5E-13 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Pfam PF01476 LysM domain 86 127 2.2E-18 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Pfam PF01476 LysM domain 149 191 2.8E-17 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Gene3D G3DSA:3.10.350.10 21 79 3.9E-17 T 29-03-2018 CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Gene3D G3DSA:3.10.350.10 143 206 2.4E-18 T 29-03-2018 CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 Gene3D G3DSA:3.10.350.10 80 142 5.7E-20 T 29-03-2018 CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SUPERFAMILY SSF54106 27 71 2.09E-11 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SUPERFAMILY SSF54001 207 323 3.24E-17 T 29-03-2018 CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SUPERFAMILY SSF54106 84 127 1.09E-12 T 29-03-2018 IPR018392 LysM domain CFE88_RS09060 79c2a5e890822090d331e903319f08a2 324 SUPERFAMILY SSF54106 147 192 2.22E-12 T 29-03-2018 IPR018392 LysM domain CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.411 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 Gene3D G3DSA:3.90.470.10 1 117 6.5E-43 T 29-03-2018 CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 SUPERFAMILY SSF54843 1 111 4.06E-43 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 29-03-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.6E-35 T 29-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CFE88_RS00640 a73b1b69956f0c336aa48b30b729b57b 117 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 4.3E-47 T 29-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 504 49.114 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 SUPERFAMILY SSF53649 305 503 1.15E-71 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 SUPERFAMILY SSF53649 5 77 1.15E-71 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 Pfam PF01676 Metalloenzyme superfamily 5 492 5.3E-75 T 29-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 PIRSF PIRSF001492 1 505 9.1E-203 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 SUPERFAMILY SSF64158 77 303 9.42E-87 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 Gene3D G3DSA:3.40.1450.10 77 293 1.1E-95 T 29-03-2018 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 503 4.5E-211 T 29-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 82 293 5.4E-84 T 29-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CFE88_RS07280 bed68eb5031cf20e212cb7f0458320fb 505 Gene3D G3DSA:3.40.720.10 294 505 4.7E-41 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CFE88_RS06225 fae010d614f4176e92b0d0e9609dc8dd 72 SMART SM00914 27 63 3.1E-10 T 29-03-2018 IPR014957 IDEAL domain CFE88_RS06225 fae010d614f4176e92b0d0e9609dc8dd 72 Pfam PF08858 IDEAL domain 27 62 2.3E-12 T 29-03-2018 IPR014957 IDEAL domain CFE88_RS09865 a65541653c5e570358f7ab2b1c4a6cdc 259 Pfam PF04507 Csa1 family 1 257 5.7E-128 T 29-03-2018 IPR007595 Csa1 family CFE88_RS09865 a65541653c5e570358f7ab2b1c4a6cdc 259 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 255 4.3E-106 T 29-03-2018 IPR007595 Csa1 family CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 Gene3D G3DSA:1.10.1040.10 170 299 2.9E-28 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 170 289 2.1E-24 T 29-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 SUPERFAMILY SSF51735 12 137 2.63E-12 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 13 292 3.7E-49 T 29-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 Gene3D G3DSA:3.40.50.720 11 169 3.7E-16 T 29-03-2018 CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 SUPERFAMILY SSF48179 170 292 5.1E-27 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS11385 e5eb78e23de06d219c5cae7754cdb5cb 300 Pfam PF02558 Ketopantoate reductase PanE/ApbA 14 142 2.0E-17 T 29-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 PRINTS PR00773 GrpE protein signature 108 123 6.8E-31 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 PRINTS PR00773 GrpE protein signature 80 96 6.8E-31 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 PRINTS PR00773 GrpE protein signature 162 177 6.8E-31 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 PRINTS PR00773 GrpE protein signature 189 208 6.8E-31 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 Hamap MF_01151 Protein GrpE [grpE]. 20 210 20.385 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 SUPERFAMILY SSF58014 60 154 7.06E-24 T 29-03-2018 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 Gene3D G3DSA:2.30.22.10 154 210 1.2E-19 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 ProSitePatterns PS01071 grpE protein signature. 165 208 - T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 SUPERFAMILY SSF51064 156 210 7.19E-17 T 29-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 Gene3D G3DSA:3.90.20.20 3 153 1.0E-22 T 29-03-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CFE88_RS03345 faf1d64571bfe2e9b3e536bfe29ab525 210 Pfam PF01025 GrpE 47 210 5.9E-48 T 29-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 Gene3D G3DSA:3.20.20.80 1 470 2.9E-146 T 29-03-2018 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 Hamap MF_01574 6-phospho-beta-galactosidase [lacG]. 1 470 68.163 T 29-03-2018 IPR005928 6-phospho-beta-galactosidase GO:0019512|GO:0033920 KEGG: 00052+3.2.1.85 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 TIGRFAM TIGR01233 lacG: 6-phospho-beta-galactosidase 2 469 1.6E-258 T 29-03-2018 IPR005928 6-phospho-beta-galactosidase GO:0019512|GO:0033920 KEGG: 00052+3.2.1.85 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 2.1E-24 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 438 450 2.1E-24 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 414 431 2.1E-24 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 290 304 2.1E-24 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 PRINTS PR00131 Glycosyl hydrolase family 1 signature 371 379 2.1E-24 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 29-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 Pfam PF00232 Glycosyl hydrolase family 1 2 468 1.1E-173 T 29-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 371 379 - T 29-03-2018 IPR018120 Glycoside hydrolase family 1, active site CFE88_RS00825 0564c4cfe3cb29bd34e1bc827ee257cb 470 SUPERFAMILY SSF51445 1 467 2.91E-160 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 Gene3D G3DSA:3.40.50.1170 1 205 1.4E-54 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 SMART SM00870 3 317 1.4E-126 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 PIRSF PIRSF001220 1 322 2.8E-89 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 6 14 - T 29-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 Gene3D G3DSA:3.40.50.40 206 322 7.9E-28 T 29-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 SUPERFAMILY SSF53774 1 321 2.75E-96 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 Pfam PF00710 Asparaginase, N-terminal 3 191 2.7E-57 T 29-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 PIRSF PIRSF500176 1 322 8.2E-88 T 29-03-2018 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 80 90 - T 29-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 PRINTS PR00139 Asparaginase/glutaminase family signature 79 97 1.9E-13 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 1.9E-13 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS03845 9b531aea597afd09a28c13c1ce7e799c 322 PRINTS PR00139 Asparaginase/glutaminase family signature 252 270 1.9E-13 T 29-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CFE88_RS00010 43ad65e10944d8e03dfbdf016105bc52 138 Gene3D G3DSA:1.20.210.10 1 138 9.8E-4 T 29-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS00010 43ad65e10944d8e03dfbdf016105bc52 138 Pfam PF11070 Protein of unknown function (DUF2871) 1 130 4.8E-44 T 29-03-2018 IPR021299 Protein of unknown function DUF2871 CFE88_RS08075 20b0eb55cba7c55ecf8edf0a396e0c47 160 PIRSF PIRSF019239 1 160 8.2E-29 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CFE88_RS08075 20b0eb55cba7c55ecf8edf0a396e0c47 160 Pfam PF01899 Na+/H+ ion antiporter subunit 8 158 4.0E-31 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CFE88_RS12635 142393a8cff8e2889a173fc0841d3467 91 SUPERFAMILY SSF52833 6 76 5.19E-12 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS12635 142393a8cff8e2889a173fc0841d3467 91 Gene3D G3DSA:3.40.30.10 1 85 6.6E-13 T 29-03-2018 CFE88_RS12635 142393a8cff8e2889a173fc0841d3467 91 Pfam PF00462 Glutaredoxin 8 57 1.3E-10 T 29-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CFE88_RS00150 bebaf6dc5b8f460c67251830f33706bb 402 Pfam PF03616 Sodium/glutamate symporter 2 370 7.0E-140 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CFE88_RS00150 bebaf6dc5b8f460c67251830f33706bb 402 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 401 22.223 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CFE88_RS00150 bebaf6dc5b8f460c67251830f33706bb 402 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 400 1.6E-103 T 29-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CFE88_RS11690 0697eebbcba32359496fd0b8d2f9b07e 203 SUPERFAMILY SSF63817 60 201 2.35E-37 T 29-03-2018 IPR023365 Sortase domain CFE88_RS11690 0697eebbcba32359496fd0b8d2f9b07e 203 TIGRFAM TIGR01076 sortase_fam: sortase 71 201 1.4E-40 T 29-03-2018 IPR005754 Sortase family CFE88_RS11690 0697eebbcba32359496fd0b8d2f9b07e 203 Gene3D G3DSA:2.40.260.10 59 203 2.5E-29 T 29-03-2018 IPR023365 Sortase domain CFE88_RS11690 0697eebbcba32359496fd0b8d2f9b07e 203 Pfam PF04203 Sortase family 73 189 1.2E-20 T 29-03-2018 IPR005754 Sortase family CFE88_RS11460 5bdee896fed65015773d0f9033638bfb 602 Gene3D G3DSA:3.40.50.1110 403 599 4.1E-18 T 29-03-2018 CFE88_RS11460 5bdee896fed65015773d0f9033638bfb 602 SUPERFAMILY SSF52266 436 596 2.17E-16 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain CFE88_RS11460 5bdee896fed65015773d0f9033638bfb 602 Pfam PF01757 Acyltransferase family 19 348 9.0E-28 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 CFE88_RS01715 971caa825924ac376d0536e1eb21cf18 278 Pfam PF13349 Putative adhesin 44 277 1.0E-19 T 29-03-2018 IPR025164 Putative adhesin CFE88_RS11995 715ec5837f931e76de928122ea50d515 557 Pfam PF01609 Transposase DDE domain 264 515 8.5E-38 T 29-03-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS11995 715ec5837f931e76de928122ea50d515 557 Gene3D G3DSA:3.90.350.10 259 498 2.0E-7 T 29-03-2018 IPR014736 Transposase, Tn5-like, core CFE88_RS11995 715ec5837f931e76de928122ea50d515 557 Pfam PF05598 Transposase domain (DUF772) 49 117 1.6E-14 T 29-03-2018 IPR008490 Transposase InsH, N-terminal CFE88_RS03285 4982154965ccad28f9acabf2416740f7 194 Gene3D G3DSA:1.10.3210.10 1 189 4.5E-24 T 29-03-2018 CFE88_RS03285 4982154965ccad28f9acabf2416740f7 194 Pfam PF01966 HD domain 18 130 1.5E-14 T 29-03-2018 IPR006674 HD domain CFE88_RS03285 4982154965ccad28f9acabf2416740f7 194 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 10 182 4.1E-44 T 29-03-2018 IPR005249 Conserved hypothetical protein CHP00488 CFE88_RS03285 4982154965ccad28f9acabf2416740f7 194 SMART SM00471 14 141 4.2E-8 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS03285 4982154965ccad28f9acabf2416740f7 194 SUPERFAMILY SSF109604 4 169 2.13E-30 T 29-03-2018 CFE88_RS10985 e9c133cd3738c335aafc1b200c32f80b 164 SUPERFAMILY SSF160424 3 163 1.31E-57 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS10985 e9c133cd3738c335aafc1b200c32f80b 164 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 1 157 1.7E-66 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS10985 e9c133cd3738c335aafc1b200c32f80b 164 Pfam PF04634 Protein of unknown function, DUF600 7 152 1.9E-49 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS10985 e9c133cd3738c335aafc1b200c32f80b 164 Gene3D G3DSA:3.30.500.20 4 116 3.9E-37 T 29-03-2018 CFE88_RS07910 dde3c2aca7839a1535ea29c4b7bb05cd 122 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 11 120 1.1E-24 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS07910 dde3c2aca7839a1535ea29c4b7bb05cd 122 SUPERFAMILY SSF46785 4 120 2.73E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07910 dde3c2aca7839a1535ea29c4b7bb05cd 122 Gene3D G3DSA:1.10.10.10 1 122 4.3E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 Pfam PF01293 Phosphoenolpyruvate carboxykinase 22 482 1.2E-221 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 Gene3D G3DSA:3.90.228.20 216 293 2.4E-29 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 Gene3D G3DSA:3.90.228.20 294 526 1.1E-94 T 29-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 Gene3D G3DSA:3.40.449.10 22 214 2.8E-78 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 SUPERFAMILY SSF68923 12 215 1.57E-80 T 29-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 18 521 1.4E-237 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 253 268 - T 29-03-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 PIRSF PIRSF006294 2 528 3.2E-242 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 SUPERFAMILY SSF53795 216 516 8.7E-130 T 29-03-2018 CFE88_RS02430 a11b6fea6b2fd9b75c092641ad715f63 530 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 14 530 55.977 T 29-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CFE88_RS09315 da43f215819adc93baa06e1f1846eec0 135 Pfam PF11181 Heat induced stress protein YflT 4 100 1.9E-17 T 29-03-2018 IPR025889 General stress protein 17M-like domain CFE88_RS09315 da43f215819adc93baa06e1f1846eec0 135 ProDom PD458455 UPF0355 MW0363 SE2351 MRSA252 SSP2326 SH2586 SA0372 SAV0387 SACOL0457 SERP0066 1 135 2.0E-72 T 29-03-2018 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 Gene3D G3DSA:1.20.1510.10 11 207 4.3E-34 T 29-03-2018 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 SUPERFAMILY SSF161111 9 210 2.88E-48 T 29-03-2018 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 Pfam PF16916 Dimerisation domain of Zinc Transporter 216 288 2.2E-17 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 Pfam PF01545 Cation efflux family 17 208 3.8E-42 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 288 8.0E-60 T 29-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 SUPERFAMILY SSF160240 212 289 5.1E-18 T 29-03-2018 CFE88_RS12110 d5d05fd2f15e5d652105967d3bde90ff 295 Gene3D G3DSA:3.30.70.1350 208 290 6.0E-17 T 29-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain CFE88_RS08645 cbb8a6075b72dac836a0d96b853e5de5 352 Gene3D G3DSA:3.40.50.1010 155 288 4.0E-21 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS08645 cbb8a6075b72dac836a0d96b853e5de5 352 SMART SM00670 159 264 2.0E-4 T 29-03-2018 IPR002716 PIN domain CFE88_RS08645 cbb8a6075b72dac836a0d96b853e5de5 352 Pfam PF01938 TRAM domain 290 334 5.0E-5 T 29-03-2018 IPR002792 TRAM domain CFE88_RS08645 cbb8a6075b72dac836a0d96b853e5de5 352 SUPERFAMILY SSF88723 161 285 2.16E-20 T 29-03-2018 IPR029060 PIN domain-like CFE88_RS03930 253f6a62b797c68e0b9a9667e91e9998 105 SUPERFAMILY SSF101386 3 102 6.4E-25 T 29-03-2018 CFE88_RS03930 253f6a62b797c68e0b9a9667e91e9998 105 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 23 102 2.6E-20 T 29-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CFE88_RS03930 253f6a62b797c68e0b9a9667e91e9998 105 PIRSF PIRSF029904 1 105 4.3E-50 T 29-03-2018 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD CFE88_RS03930 253f6a62b797c68e0b9a9667e91e9998 105 Gene3D G3DSA:1.10.3420.10 1 105 4.0E-26 T 29-03-2018 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 SUPERFAMILY SSF53784 1 312 9.81E-114 T 29-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 214 226 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 160 176 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 122 139 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 178 195 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 158 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 241 263 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 1.9E-86 T 29-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 Gene3D G3DSA:3.40.50.450 1 185 5.1E-77 T 29-03-2018 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 Pfam PF00365 Phosphofructokinase 3 277 3.9E-113 T 29-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 321 47.067 T 29-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 PIRSF PIRSF000532 1 322 2.7E-121 T 29-03-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 Gene3D G3DSA:3.40.50.450 186 302 3.8E-17 T 29-03-2018 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 301 3.2E-130 T 29-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CFE88_RS02825 149d1647f2aaf10e32dac8721c54780c 322 ProSitePatterns PS00433 Phosphofructokinase signature. 245 263 - T 29-03-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CFE88_RS11605 db617e398ddd1ec6c041efba8c3bcb08 326 SUPERFAMILY SSF53474 62 316 8.73E-36 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11605 db617e398ddd1ec6c041efba8c3bcb08 326 Pfam PF07859 alpha/beta hydrolase fold 102 301 1.5E-30 T 29-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 CFE88_RS11605 db617e398ddd1ec6c041efba8c3bcb08 326 Gene3D G3DSA:3.40.50.1820 21 323 2.2E-31 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09810 2b7f37c4499f7d163d83dc0a0c90362b 448 Pfam PF07435 YycH protein 8 445 3.8E-172 T 29-03-2018 IPR009996 Regulatory protein YycH CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 5 148 6.2E-55 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 116 135 4.7E-43 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 30 48 4.7E-43 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 75 93 4.7E-43 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 7 25 4.7E-43 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 51 69 4.7E-43 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 SUPERFAMILY SSF63411 3 150 8.15E-63 T 29-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 10 143 3.0E-76 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 Gene3D G3DSA:3.30.1360.80 5 152 2.4E-58 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 3 153 34.145 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS01105 22793bb5979fa04d20e8352bc1c2717c 156 PIRSF PIRSF006160 3 154 2.5E-65 T 29-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 TIGRFAM TIGR00033 aroC: chorismate synthase 1 368 1.3E-120 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 PIRSF PIRSF001456 1 380 5.6E-122 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 ProSitePatterns PS00787 Chorismate synthase signature 1. 7 22 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 Gene3D G3DSA:3.60.150.10 1 387 5.7E-131 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 SUPERFAMILY SSF103263 1 383 6.54E-139 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 Hamap MF_00300 Chorismate synthase [aroC]. 1 370 34.405 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 ProSitePatterns PS00789 Chorismate synthase signature 3. 337 353 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 Pfam PF01264 Chorismate synthase 1 363 1.0E-116 T 29-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS03895 f76d714695f20303c3f24548f35ae8db 388 ProSitePatterns PS00788 Chorismate synthase signature 2. 131 147 - T 29-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 SUPERFAMILY SSF48150 4 194 5.97E-42 T 29-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 Gene3D G3DSA:1.10.1670.10 123 201 1.5E-10 T 29-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 PIRSF PIRSF001435 1 198 6.9E-52 T 29-03-2018 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 32 168 9.3E-12 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 Gene3D G3DSA:1.10.340.30 18 122 1.4E-20 T 29-03-2018 CFE88_RS08180 778155b6887c189ce9583d1798ae68fa 211 SMART SM00478 35 192 6.8E-15 T 29-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CFE88_RS11465 422fe025cb294d8314226eae9110bee5 257 Pfam PF05257 CHAP domain 154 232 1.4E-13 T 29-03-2018 IPR007921 CHAP domain CFE88_RS11465 422fe025cb294d8314226eae9110bee5 257 SUPERFAMILY SSF54001 145 256 7.94E-12 T 29-03-2018 CFE88_RS04715 c18d7c8fb4e9360978c2796cbf464572 333 SUPERFAMILY SSF52266 124 326 1.57E-38 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain CFE88_RS04715 c18d7c8fb4e9360978c2796cbf464572 333 Gene3D G3DSA:3.40.50.1110 115 333 2.4E-26 T 29-03-2018 CFE88_RS04715 c18d7c8fb4e9360978c2796cbf464572 333 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 132 318 6.1E-14 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 Pfam PF00467 KOW motif 5 36 3.2E-9 T 29-03-2018 IPR005824 KOW CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 SMART SM00739 2 29 1.3E-6 T 29-03-2018 IPR005824 KOW CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 7.5E-31 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 SUPERFAMILY SSF50104 1 99 5.16E-38 T 29-03-2018 IPR008991 Translation protein SH3-like domain CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 29-03-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 Gene3D G3DSA:2.30.30.30 1 91 1.7E-37 T 29-03-2018 IPR014722 Ribosomal protein L2 domain 2 CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 3.3E-39 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00670 fc00e88a36656330d52a1b02ce0dc35f 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 95 22.632 T 29-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 Pfam PF00361 Proton-conducting membrane transporter 128 417 1.1E-54 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 4.9E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 4.9E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 4.9E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 4.9E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08080 c3a664010ca62d0eb8938fe5e5245fb5 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 163 187 4.9E-12 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS02455 a4a5c376af674501e2589ae2890d1403 121 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 118 17.014 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CFE88_RS02455 a4a5c376af674501e2589ae2890d1403 121 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 113 1.4E-23 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CFE88_RS09605 af056babee40bdb30a192e57c4940c33 252 Gene3D G3DSA:3.40.50.300 1 243 1.7E-63 T 29-03-2018 CFE88_RS09605 af056babee40bdb30a192e57c4940c33 252 Pfam PF00005 ABC transporter 22 170 4.5E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS09605 af056babee40bdb30a192e57c4940c33 252 SMART SM00382 31 219 9.7E-13 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS09605 af056babee40bdb30a192e57c4940c33 252 SUPERFAMILY SSF52540 3 223 1.06E-66 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 PIRSF PIRSF000412 1 409 2.4E-165 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 Pfam PF00464 Serine hydroxymethyltransferase 4 381 2.2E-178 T 29-03-2018 CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 3 412 53.763 T 29-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 Gene3D G3DSA:3.40.640.10 33 269 3.1E-51 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 Gene3D G3DSA:3.90.1150.10 270 411 2.9E-59 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 SUPERFAMILY SSF53383 3 411 2.85E-180 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS01210 8a4898b6105a3077d5d186ce08dc74d4 412 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 218 234 - T 29-03-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CFE88_RS08815 31c1626e289b555f9d16668e6da9949e 179 Pfam PF00156 Phosphoribosyl transferase domain 13 159 9.9E-25 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS08815 31c1626e289b555f9d16668e6da9949e 179 Gene3D G3DSA:3.40.50.2020 1 179 3.7E-47 T 29-03-2018 CFE88_RS08815 31c1626e289b555f9d16668e6da9949e 179 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 8 172 4.2E-64 T 29-03-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CFE88_RS08815 31c1626e289b555f9d16668e6da9949e 179 SUPERFAMILY SSF53271 1 177 1.57E-57 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS08785 31cb2026c4e0aaf34a055280674ac0cb 159 SUPERFAMILY SSF55083 1 148 3.14E-54 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CFE88_RS08785 31cb2026c4e0aaf34a055280674ac0cb 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 88 99 - T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CFE88_RS08785 31cb2026c4e0aaf34a055280674ac0cb 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 132 1.0E-38 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CFE88_RS08785 31cb2026c4e0aaf34a055280674ac0cb 159 Gene3D G3DSA:3.30.70.560 1 158 4.2E-61 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CFE88_RS08785 31cb2026c4e0aaf34a055280674ac0cb 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 132 2.0E-47 T 29-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CFE88_RS08965 7c4e23b2f3e37e38728fac979bdece29 177 Gene3D G3DSA:3.40.630.30 1 170 8.1E-31 T 29-03-2018 CFE88_RS08965 7c4e23b2f3e37e38728fac979bdece29 177 SUPERFAMILY SSF55729 3 162 9.7E-38 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08965 7c4e23b2f3e37e38728fac979bdece29 177 Pfam PF13302 Acetyltransferase (GNAT) domain 3 137 9.7E-16 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 139 155 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 8 340 1.2E-125 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 Gene3D G3DSA:3.20.20.210 3 344 2.1E-95 T 29-03-2018 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 21 30 - T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 4 341 1.0E-120 T 29-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 SUPERFAMILY SSF51726 3 342 7.06E-103 T 29-03-2018 CFE88_RS02325 4a32bd0df0331104dcc2ac9202f6f7d4 344 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 5 342 46.407 T 29-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CFE88_RS10505 1ee74538ca8550c43c0ba088f1fc3e2e 727 Gene3D G3DSA:3.40.50.1820 339 727 2.6E-95 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10505 1ee74538ca8550c43c0ba088f1fc3e2e 727 SUPERFAMILY SSF53474 348 693 6.08E-44 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10505 1ee74538ca8550c43c0ba088f1fc3e2e 727 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 2 38 2.8E-13 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS10505 1ee74538ca8550c43c0ba088f1fc3e2e 727 Pfam PF04650 YSIRK type signal peptide 3 27 2.5E-10 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS00545 e1a0c3fe39ee44c94a51b785abc001b9 397 Pfam PF07690 Major Facilitator Superfamily 21 298 9.9E-37 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS00545 e1a0c3fe39ee44c94a51b785abc001b9 397 SUPERFAMILY SSF103473 16 391 4.97E-54 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00545 e1a0c3fe39ee44c94a51b785abc001b9 397 Gene3D G3DSA:1.20.1250.20 2 200 6.3E-29 T 29-03-2018 CFE88_RS00545 e1a0c3fe39ee44c94a51b785abc001b9 397 Gene3D G3DSA:1.20.1250.20 209 395 3.2E-18 T 29-03-2018 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Gene3D G3DSA:3.40.1440.10 10 107 2.1E-25 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 SUPERFAMILY SSF82771 25 106 2.35E-21 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Hamap MF_00203 UvrABC system protein C [uvrC]. 11 596 28.727 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Pfam PF01541 GIY-YIG catalytic domain 25 99 6.6E-11 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 SMART SM00465 24 104 7.1E-25 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Gene3D G3DSA:1.10.150.20 531 600 6.0E-11 T 29-03-2018 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 SUPERFAMILY SSF46600 192 244 5.23E-12 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Pfam PF02151 UvrB/uvrC motif 206 239 1.2E-9 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 382 532 5.7E-53 T 29-03-2018 IPR001162 UvrC family homology region CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 15 579 4.1E-199 T 29-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 SUPERFAMILY SSF47781 511 598 3.81E-19 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS05635 149de739eb0d782afe29de8415953cfb 600 Gene3D G3DSA:4.10.860.10 184 244 8.0E-15 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS09930 bd7fe684a3a08a2c826ef6757dcb249b 258 Pfam PF04507 Csa1 family 1 257 1.7E-125 T 29-03-2018 IPR007595 Csa1 family CFE88_RS09930 bd7fe684a3a08a2c826ef6757dcb249b 258 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 255 2.5E-108 T 29-03-2018 IPR007595 Csa1 family CFE88_RS04330 8ac59649404fdef0ec120ad00d833041 258 Pfam PF00005 ABC transporter 21 173 1.3E-22 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04330 8ac59649404fdef0ec120ad00d833041 258 SUPERFAMILY SSF52540 3 236 2.05E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04330 8ac59649404fdef0ec120ad00d833041 258 Gene3D G3DSA:3.40.50.300 1 257 1.5E-49 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF02811 PHP domain 335 693 8.6E-52 T 29-03-2018 IPR004013 PHP domain GO:0003824 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Gene3D G3DSA:3.20.20.150 320 412 6.8E-5 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 SMART SM00479 419 585 4.8E-59 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Gene3D G3DSA:2.40.50.140 220 319 2.1E-16 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 SUPERFAMILY SSF53098 419 873 5.2E-102 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Gene3D G3DSA:3.20.20.140 570 793 2.7E-19 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 413 634 2.8E-55 T 29-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF00929 Exonuclease 421 576 2.7E-43 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF14579 Helix-hairpin-helix motif 1347 1425 3.7E-9 T 29-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF14480 DNA polymerase III polC-type N-terminus I 6 77 5.3E-17 T 29-03-2018 IPR028112 DNA polymerase III polC-type, N-terminal domain I KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Gene3D G3DSA:1.10.150.280 1371 1419 2.6E-7 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 SMART SM00481 334 401 1.1E-26 T 29-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Gene3D G3DSA:3.30.420.10 413 569 7.2E-44 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 SUPERFAMILY SSF81585 1373 1418 8.5E-7 T 29-03-2018 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF11490 DNA polymerase III polC-type N-terminus II 92 205 2.8E-18 T 29-03-2018 IPR024754 DNA polymerase III polC-like, N-terminal domain II KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 TIGRFAM TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 230 1434 0.0 T 29-03-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Hamap MF_00356 DNA polymerase III PolC-type [polC]. 1 1436 435.563 T 29-03-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS05125 bc383e8841cb84a0156c4269c7ba9e9f 1436 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 822 1244 2.3E-94 T 29-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS10140 ca19a0b05af804d10b4685dd3ac3bdf9 2374 Pfam PF00746 LPXTG cell wall anchor motif 2328 2370 4.4E-6 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS10140 ca19a0b05af804d10b4685dd3ac3bdf9 2374 TIGRFAM TIGR03715 KxYKxGKxW: KxYKxGKxW signal peptide 16 34 3.4E-6 T 29-03-2018 IPR022263 KxYKxGKxW signal peptide CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 SUPERFAMILY SSF53686 5 306 3.01E-104 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 294 7.3E-72 T 29-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 TIGRFAM TIGR01139 cysK: cysteine synthase A 10 306 5.2E-141 T 29-03-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 Gene3D G3DSA:3.40.50.1100 43 140 6.4E-41 T 29-03-2018 CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 Gene3D G3DSA:3.40.50.1100 141 309 9.1E-58 T 29-03-2018 CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 35 53 - T 29-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CFE88_RS08800 7f76cc148d98fb8dce1a80772649f053 310 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 306 1.3E-133 T 29-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CFE88_RS09935 d8daf313d4c482ec87a4f2177edb127e 174 Pfam PF01420 Type I restriction modification DNA specificity domain 9 161 3.2E-21 T 29-03-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CFE88_RS09935 d8daf313d4c482ec87a4f2177edb127e 174 SUPERFAMILY SSF116734 8 174 1.32E-28 T 29-03-2018 CFE88_RS09935 d8daf313d4c482ec87a4f2177edb127e 174 Gene3D G3DSA:3.90.220.20 3 157 2.5E-15 T 29-03-2018 CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 210 8.0E-60 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 SUPERFAMILY SSF52540 3 311 1.73E-42 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 Gene3D G3DSA:3.30.1220.10 241 376 5.0E-30 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 375 3.8E-26 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 Gene3D G3DSA:3.40.50.300 1 229 5.2E-52 T 29-03-2018 CFE88_RS09140 d1de28349c464ba64043ffd7ef129e42 400 SMART SM00833 260 375 5.4E-47 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 Gene3D G3DSA:3.90.79.10 1 180 5.2E-42 T 29-03-2018 CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 29-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 PRINTS PR00502 NUDIX hydrolase family signature 85 100 2.8E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 PRINTS PR00502 NUDIX hydrolase family signature 71 85 2.8E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 SUPERFAMILY SSF55811 6 176 8.26E-47 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS03765 4be2d83341c781c94a933199478b0e7e 180 Pfam PF00293 NUDIX domain 41 163 7.3E-20 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CFE88_RS07935 01f4a25520675612351111c3a9bcb551 205 Gene3D G3DSA:1.20.58.220 83 204 1.1E-5 T 29-03-2018 CFE88_RS07935 01f4a25520675612351111c3a9bcb551 205 Pfam PF01865 Protein of unknown function DUF47 2 202 3.5E-20 T 29-03-2018 IPR018445 Putative phosphate transport regulator CFE88_RS07935 01f4a25520675612351111c3a9bcb551 205 SUPERFAMILY SSF109755 20 195 7.15E-5 T 29-03-2018 CFE88_RS06655 02650389acf008559da356e64f8a7e48 102 Pfam PF01883 Iron-sulfur cluster assembly protein 6 79 3.6E-19 T 29-03-2018 IPR002744 MIP18 family-like CFE88_RS06655 02650389acf008559da356e64f8a7e48 102 SUPERFAMILY SSF117916 3 100 1.9E-31 T 29-03-2018 IPR034904 Fe-S cluster assembly domain CFE88_RS06655 02650389acf008559da356e64f8a7e48 102 Gene3D G3DSA:3.30.300.130 2 101 3.8E-26 T 29-03-2018 IPR034904 Fe-S cluster assembly domain CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 3 181 6.0E-44 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 Gene3D G3DSA:3.40.50.300 1 198 1.5E-32 T 29-03-2018 CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 SUPERFAMILY SSF90002 218 288 4.18E-8 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 Gene3D G3DSA:3.30.1220.10 199 292 1.2E-8 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 SUPERFAMILY SSF52540 2 179 1.57E-26 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10235 d01109195172a9eaab7898e2ee82e1ce 293 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 220 291 1.5E-9 T 29-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 Gene3D G3DSA:3.90.1150.10 270 387 3.9E-27 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 PIRSF PIRSF000524 1 385 7.5E-118 T 29-03-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 Pfam PF00266 Aminotransferase class-V 8 334 6.6E-41 T 29-03-2018 IPR000192 Aminotransferase class V domain CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 206 - T 29-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 Gene3D G3DSA:3.40.640.10 14 269 2.5E-31 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS02705 8a454a6d86e0edf28ef99aa16cc28c43 387 SUPERFAMILY SSF53383 6 363 2.64E-92 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 SUPERFAMILY SSF52540 4 202 8.76E-14 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 SUPERFAMILY SSF48019 205 324 4.08E-21 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 Gene3D G3DSA:1.10.8.60 135 213 1.8E-17 T 29-03-2018 CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 Gene3D G3DSA:3.40.50.300 2 132 2.6E-17 T 29-03-2018 CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 Gene3D G3DSA:1.20.272.10 214 324 1.7E-30 T 29-03-2018 CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 5 324 3.8E-81 T 29-03-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 CFE88_RS03315 3bc414bda03937194fafd5dbd17586ac 324 Pfam PF06144 DNA polymerase III, delta subunit 8 182 2.1E-44 T 29-03-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 CFE88_RS12485 9c87660d77f5760336e1a69bd607e832 232 Gene3D G3DSA:1.20.5.50 103 231 3.3E-4 T 29-03-2018 CFE88_RS12485 9c87660d77f5760336e1a69bd607e832 232 Gene3D G3DSA:1.20.58.130 15 94 0.24 T 29-03-2018 CFE88_RS12510 9c87660d77f5760336e1a69bd607e832 232 Gene3D G3DSA:1.20.5.50 103 231 3.3E-4 T 29-03-2018 CFE88_RS12510 9c87660d77f5760336e1a69bd607e832 232 Gene3D G3DSA:1.20.58.130 15 94 0.24 T 29-03-2018 CFE88_RS01415 23cbe7c23bad3ef900338221fa1e5b8c 159 Hamap MF_00638 Serine-protein kinase RsbW [rsbW]. 2 158 37.828 T 29-03-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 CFE88_RS01415 23cbe7c23bad3ef900338221fa1e5b8c 159 TIGRFAM TIGR01924 rsbW_low_gc: anti-sigma B factor 1 155 6.6E-77 T 29-03-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 CFE88_RS01415 23cbe7c23bad3ef900338221fa1e5b8c 159 Pfam PF13581 Histidine kinase-like ATPase domain 12 142 1.1E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01415 23cbe7c23bad3ef900338221fa1e5b8c 159 SUPERFAMILY SSF55874 35 136 1.44E-13 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01415 23cbe7c23bad3ef900338221fa1e5b8c 159 Gene3D G3DSA:3.30.565.10 3 157 3.7E-10 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 Pfam PF12833 Helix-turn-helix domain 170 248 2.7E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 Gene3D G3DSA:1.10.10.60 198 252 1.0E-7 T 29-03-2018 CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 Gene3D G3DSA:2.60.120.10 20 197 2.2E-17 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 SUPERFAMILY SSF46689 200 252 1.66E-9 T 29-03-2018 IPR009057 Homeobox domain-like GO:0003677 CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 SMART SM00342 164 247 2.7E-15 T 29-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CFE88_RS00395 5ff6cc672dfc22c1a8ad9120d9530a02 657 SUPERFAMILY SSF51182 25 73 5.34E-5 T 29-03-2018 IPR011051 RmlC-like cupin domain CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 Gene3D G3DSA:3.40.1180.10 10 255 1.2E-87 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 SUPERFAMILY SSF64005 21 247 1.96E-83 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 24 251 3.6E-82 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 24 252 38.779 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 197 214 - T 29-03-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199 CFE88_RS05145 a419590326a8eb627cf4803606a72b74 256 Pfam PF01255 Putative undecaprenyl diphosphate synthase 31 251 5.6E-78 T 29-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 Pfam PF00171 Aldehyde dehydrogenase family 24 485 2.8E-168 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 Gene3D G3DSA:3.40.605.10 2 271 1.0E-90 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 Gene3D G3DSA:3.40.309.10 272 471 8.1E-70 T 29-03-2018 CFE88_RS11715 cc4e51d88fcd3c0a58ec04c8c38b8379 497 SUPERFAMILY SSF53720 7 490 1.96E-159 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS07750 6ed47a415d755dca55210b530e75e431 160 Pfam PF04073 Aminoacyl-tRNA editing domain 35 148 7.6E-24 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CFE88_RS07750 6ed47a415d755dca55210b530e75e431 160 Gene3D G3DSA:3.90.960.10 1 160 3.3E-39 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CFE88_RS07750 6ed47a415d755dca55210b530e75e431 160 SUPERFAMILY SSF55826 7 157 6.28E-41 T 29-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CFE88_RS07750 6ed47a415d755dca55210b530e75e431 160 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 7 158 1.3E-62 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CFE88_RS07750 6ed47a415d755dca55210b530e75e431 160 PIRSF PIRSF006181 2 160 2.2E-65 T 29-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CFE88_RS10550 01ade37871932c5ca40b7c175abca6f0 317 Gene3D G3DSA:3.40.50.970 1 317 7.7E-82 T 29-03-2018 CFE88_RS10550 01ade37871932c5ca40b7c175abca6f0 317 SUPERFAMILY SSF52518 3 316 3.61E-95 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10550 01ade37871932c5ca40b7c175abca6f0 317 Pfam PF00676 Dehydrogenase E1 component 14 304 8.8E-85 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 CFE88_RS01130 dffe38250e68a46d9e9cf42d28a49e16 286 Pfam PF00583 Acetyltransferase (GNAT) family 35 144 8.1E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS01130 dffe38250e68a46d9e9cf42d28a49e16 286 Gene3D G3DSA:3.40.630.30 4 174 6.5E-19 T 29-03-2018 CFE88_RS01130 dffe38250e68a46d9e9cf42d28a49e16 286 SUPERFAMILY SSF55729 8 152 2.06E-21 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS01130 dffe38250e68a46d9e9cf42d28a49e16 286 Gene3D G3DSA:3.40.630.30 182 285 8.8E-5 T 29-03-2018 CFE88_RS01130 dffe38250e68a46d9e9cf42d28a49e16 286 SUPERFAMILY SSF55729 185 280 1.14E-5 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 12 477 7.2E-233 T 29-03-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 29-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 Gene3D G3DSA:3.40.605.10 3 270 8.9E-93 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 Pfam PF00171 Aldehyde dehydrogenase family 17 482 3.0E-174 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 SUPERFAMILY SSF53720 9 488 1.96E-168 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11280 fa3bfc578cd73978c4f046219c0cef55 496 Gene3D G3DSA:3.40.309.10 271 468 1.5E-76 T 29-03-2018 CFE88_RS11685 3e7a2919609b983504b8d1372b0891c5 164 Pfam PF13420 Acetyltransferase (GNAT) domain 2 153 2.0E-22 T 29-03-2018 CFE88_RS11685 3e7a2919609b983504b8d1372b0891c5 164 Gene3D G3DSA:3.40.630.30 1 164 1.6E-32 T 29-03-2018 CFE88_RS11685 3e7a2919609b983504b8d1372b0891c5 164 SUPERFAMILY SSF55729 1 163 9.66E-35 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 TIGRFAM TIGR01865 cas_Csn1: CRISPR subtype II RNA-guided endonuclease Cas9 4 751 8.4E-139 T 29-03-2018 IPR028629 CRISPR-associated endonuclease Cas9 GO:0004519 CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 Pfam PF16592 REC lobe of CRISPR-associated endonuclease Cas9 231 420 1.1E-15 T 29-03-2018 IPR032240 CRISPR-associated endonuclease Cas9, REC lobe CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 Hamap MF_01480 CRISPR-associated endonuclease Cas9 [cas9]. 3 1053 13.08 T 29-03-2018 IPR028629 CRISPR-associated endonuclease Cas9 GO:0004519 CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 Gene3D G3DSA:3.30.420.10 4 82 3.9E-4 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 Pfam PF13395 HNH endonuclease 534 589 8.7E-21 T 29-03-2018 IPR003615 HNH nuclease CFE88_RS09830 7148fba1b37cab300025e7b320cc611f 1053 Gene3D G3DSA:3.40.1800.10 514 595 2.0E-4 T 29-03-2018 CFE88_RS03760 63dd8c8336a6aa12d778f62467f5bb17 302 SUPERFAMILY SSF51430 1 286 5.89E-67 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS03760 63dd8c8336a6aa12d778f62467f5bb17 302 Pfam PF00248 Aldo/keto reductase family 14 286 1.3E-53 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS03760 63dd8c8336a6aa12d778f62467f5bb17 302 Gene3D G3DSA:3.20.20.100 1 301 1.2E-65 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS06065 a74f8e81c414f5b519ee50b6d5059f2d 302 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 281 1.4E-79 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS06065 a74f8e81c414f5b519ee50b6d5059f2d 302 SUPERFAMILY SSF53590 1 300 8.89E-90 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS06065 a74f8e81c414f5b519ee50b6d5059f2d 302 Gene3D G3DSA:3.90.245.10 1 301 2.6E-93 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS07670 80b44ebbb9159ea42155b746fd9f5a2f 145 Pfam PF10517 Electron transfer DM13 55 144 4.7E-11 T 29-03-2018 IPR019545 DM13 domain CFE88_RS07670 80b44ebbb9159ea42155b746fd9f5a2f 145 Gene3D G3DSA:3.40.190.10 1 131 2.4E-4 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 SUPERFAMILY SSF52540 3 196 7.39E-54 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 6 191 3.0E-46 T 29-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 149 160 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 4 21 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 34 45 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 79 94 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 171 184 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 PRINTS PR00988 Uridine kinase signature 135 145 1.7E-37 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 TIGRFAM TIGR00235 udk: uridine kinase 3 204 4.7E-89 T 29-03-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 Gene3D G3DSA:3.40.50.300 1 207 7.6E-65 T 29-03-2018 CFE88_RS03215 4de6f239ad1c50be2f98a4495c8cd230 207 Hamap MF_00551 Uridine kinase [udk]. 1 205 41.287 T 29-03-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 CFE88_RS09625 0edaa9d026a3f2342f148dcc6de349b1 398 Gene3D G3DSA:1.20.1250.20 3 396 4.4E-4 T 29-03-2018 CFE88_RS09625 0edaa9d026a3f2342f148dcc6de349b1 398 Pfam PF12704 MacB-like periplasmic core domain 23 239 5.8E-27 T 29-03-2018 IPR025857 MacB-like periplasmic core domain CFE88_RS09625 0edaa9d026a3f2342f148dcc6de349b1 398 Pfam PF02687 FtsX-like permease family 304 392 8.6E-12 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 Gene3D G3DSA:3.40.50.1000 1 269 1.8E-26 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 2.2E-46 T 29-03-2018 IPR000150 Cof family GO:0016787 CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 29-03-2018 CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 258 2.1E-50 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 SUPERFAMILY SSF56784 1 263 9.51E-55 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11695 666980856d8db2b18eee5f85de632496 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 3.1E-22 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 8 225 3.2E-46 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 29-03-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 4 231 38.482 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 SUPERFAMILY SSF51366 5 230 2.8E-68 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 SMART SM00934 6 226 1.2E-86 T 29-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 Gene3D G3DSA:3.20.20.70 3 231 1.8E-59 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS05420 fe2120b3af1d7afcf3970f9375932a52 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 7 227 2.4E-61 T 29-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CFE88_RS10160 af12408d01cfb47ab1355ba7b04139a7 168 Pfam PF15432 Accessory Sec secretory system ASP3 18 141 2.8E-42 T 29-03-2018 IPR022259 Accessory Sec system protein Asp3 GO:0015031 CFE88_RS10160 af12408d01cfb47ab1355ba7b04139a7 168 TIGRFAM TIGR03711 acc_sec_asp3: accessory Sec system protein Asp3 8 140 3.5E-48 T 29-03-2018 IPR022259 Accessory Sec system protein Asp3 GO:0015031 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 SUPERFAMILY SSF52172 2 128 4.98E-43 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 Gene3D G3DSA:1.10.10.10 130 236 7.4E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 SMART SM00448 3 114 8.1E-47 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 231 1.5E-29 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 Pfam PF00072 Response regulator receiver domain 5 114 1.9E-30 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 SUPERFAMILY SSF46894 131 232 2.41E-31 T 29-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 Gene3D G3DSA:3.40.50.2300 1 129 1.7E-37 T 29-03-2018 CFE88_RS02850 e8fabc961644c8693986a6015046a177 236 SMART SM00862 155 231 5.0E-31 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 10 93 3.7E-26 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Pfam PF05746 DALR anticodon binding domain 436 553 5.9E-37 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 132 141 - T 29-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Gene3D G3DSA:1.10.730.10 401 553 8.2E-48 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 SUPERFAMILY SSF52374 118 446 2.39E-96 T 29-03-2018 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Hamap MF_00123 Arginine--tRNA ligase [argS]. 9 553 27.124 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 SMART SM01016 9 93 6.1E-35 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Gene3D G3DSA:3.30.1360.70 3 104 1.2E-32 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Pfam PF00750 tRNA synthetases class I (R) 104 410 3.9E-26 T 29-03-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 SUPERFAMILY SSF55190 3 113 8.37E-27 T 29-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 SUPERFAMILY SSF47323 430 553 5.3E-36 T 29-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 8 553 8.6E-154 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 SMART SM00836 435 553 2.2E-54 T 29-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 122 137 2.7E-24 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 161 174 2.7E-24 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 137 153 2.7E-24 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 304 325 2.7E-24 T 29-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CFE88_RS08185 ee5e90b1b7794373bf359ab68cbfd90c 553 Gene3D G3DSA:3.40.50.620 105 361 8.2E-58 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 Pfam PF00202 Aminotransferase class-III 25 427 2.7E-102 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 Gene3D G3DSA:3.90.1150.10 314 431 4.0E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 Gene3D G3DSA:3.40.640.10 179 313 2.4E-40 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 Gene3D G3DSA:3.90.1150.10 1 162 4.5E-36 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 SUPERFAMILY SSF53383 20 430 1.88E-125 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 PIRSF PIRSF000521 20 130 6.1E-5 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS11355 e05b2dc0ade886f3dcee233015f15006 445 PIRSF PIRSF000521 124 430 9.6E-38 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 SUPERFAMILY SSF56601 320 683 3.05E-61 T 29-03-2018 IPR012338 Beta-lactamase/transpeptidase-like CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 Gene3D G3DSA:3.90.1310.10 34 319 1.2E-40 T 29-03-2018 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 Pfam PF00905 Penicillin binding protein transpeptidase domain 352 656 2.9E-59 T 29-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 303 1.4E-40 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 SUPERFAMILY SSF56519 62 123 1.7E-36 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 SUPERFAMILY SSF56519 188 319 1.7E-36 T 29-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CFE88_RS03495 052072e546214b4587a1ae70b0633cb9 695 Gene3D G3DSA:3.40.710.10 320 691 4.2E-74 T 29-03-2018 CFE88_RS02740 16649ee4e81cc925572387813ccf4754 382 Gene3D G3DSA:3.90.1150.10 229 382 2.2E-33 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02740 16649ee4e81cc925572387813ccf4754 382 Pfam PF00266 Aminotransferase class-V 5 364 3.2E-63 T 29-03-2018 IPR000192 Aminotransferase class V domain CFE88_RS02740 16649ee4e81cc925572387813ccf4754 382 PIRSF PIRSF005572 2 381 2.2E-100 T 29-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 CFE88_RS02740 16649ee4e81cc925572387813ccf4754 382 Gene3D G3DSA:3.40.640.10 63 228 4.1E-30 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS02740 16649ee4e81cc925572387813ccf4754 382 SUPERFAMILY SSF53383 4 376 1.22E-82 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS00600 6f8d7080c48cc445a3ce81dc9385d068 444 Pfam PF00860 Permease family 16 404 1.6E-45 T 29-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS00600 6f8d7080c48cc445a3ce81dc9385d068 444 PIRSF PIRSF005353 1 444 5.6E-171 T 29-03-2018 IPR026033 Purine permease PbuG-like CFE88_RS00190 f7e29f9642b1d98a00741a843f3c8fee 226 Pfam PF03473 MOSC domain 52 159 1.1E-12 T 29-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 CFE88_RS00190 f7e29f9642b1d98a00741a843f3c8fee 226 Gene3D G3DSA:2.40.33.20 1 224 9.6E-33 T 29-03-2018 CFE88_RS00190 f7e29f9642b1d98a00741a843f3c8fee 226 SUPERFAMILY SSF50800 1 218 7.32E-61 T 29-03-2018 IPR011037 Pyruvate kinase-like, insert domain CFE88_RS07515 42046723bcca35c857554ea863aac482 319 Gene3D G3DSA:1.10.3470.10 6 319 1.1E-32 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS07515 42046723bcca35c857554ea863aac482 319 Pfam PF01032 FecCD transport family 23 314 3.5E-51 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CFE88_RS07515 42046723bcca35c857554ea863aac482 319 SUPERFAMILY SSF81345 8 314 3.92E-53 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS06530 3e1d79ee4a42290f8336766b56516623 284 SUPERFAMILY SSF55120 67 275 8.96E-60 T 29-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS06530 3e1d79ee4a42290f8336766b56516623 284 Pfam PF00849 RNA pseudouridylate synthase 84 228 1.4E-26 T 29-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS06530 3e1d79ee4a42290f8336766b56516623 284 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 20 265 1.5E-58 T 29-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS06530 3e1d79ee4a42290f8336766b56516623 284 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 126 140 - T 29-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CFE88_RS06530 3e1d79ee4a42290f8336766b56516623 284 Gene3D G3DSA:3.30.2350.10 75 272 1.6E-54 T 29-03-2018 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 29-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 425 5.7E-141 T 29-03-2018 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 Pfam PF07690 Major Facilitator Superfamily 34 406 1.3E-47 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 Gene3D G3DSA:1.20.1250.20 248 451 1.3E-29 T 29-03-2018 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 446 1.0E-205 T 29-03-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 PIRSF PIRSF002808 5 451 2.4E-155 T 29-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 SUPERFAMILY SSF103473 15 444 3.01E-78 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS11840 acc30fd58e0e0a64d25f623a4c03d129 452 Gene3D G3DSA:1.20.1250.20 18 231 3.0E-30 T 29-03-2018 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 Pfam PF00005 ABC transporter 20 161 3.2E-33 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 Pfam PF08402 TOBE domain 273 341 6.6E-8 T 29-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 Gene3D G3DSA:2.40.50.100 241 290 0.29 T 29-03-2018 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 SUPERFAMILY SSF52540 4 244 5.32E-82 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 35 312 4.5E-107 T 29-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 Gene3D G3DSA:3.40.50.300 1 240 2.3E-73 T 29-03-2018 CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 SMART SM00382 29 212 1.4E-17 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05845 19fcba7a75c0c13fb370c91df72a2cf4 364 SUPERFAMILY SSF50331 237 342 2.34E-14 T 29-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 PIRSF PIRSF005624 1 202 9.1E-48 T 29-03-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 Gene3D G3DSA:3.40.50.300 5 177 4.0E-17 T 29-03-2018 CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 176 4.1E-38 T 29-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 5 201 4.0E-93 T 29-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 SUPERFAMILY SSF52540 2 196 3.59E-35 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00420 c654d532987221abdbfc29bf619a99ef 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 3 201 45.082 T 29-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 Gene3D G3DSA:1.10.150.130 52 163 1.2E-15 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 Gene3D G3DSA:1.10.443.10 168 364 8.3E-36 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 Pfam PF13102 Phage integrase SAM-like domain 61 151 8.9E-9 T 29-03-2018 IPR025269 Phage integrase SAM-like domain CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 Pfam PF14657 Arm DNA-binding domain 10 53 2.2E-10 T 29-03-2018 IPR028259 AP2-like integrase, N-terminal domain CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 SUPERFAMILY SSF56349 60 358 2.94E-58 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CFE88_RS04895 aaef19c87ea25ae3cf05769550e7e99d 374 Pfam PF00589 Phage integrase family 168 356 3.7E-28 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS07125 e4fbb6f7ec7375ace467dda71520cdc3 114 Pfam PF14079 Domain of unknown function (DUF4260) 3 114 5.6E-40 T 29-03-2018 IPR025356 Protein of unknown function DUF4260 CFE88_RS03655 561b35207de652771bee88f9605b22f6 120 Pfam PF03780 Asp23 family, cell envelope-related function 12 116 2.0E-25 T 29-03-2018 IPR005531 Alkaline shock protein Asp23 CFE88_RS10405 9e2160740f8cb9fe98cb08bca12f57fb 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 212 2.1E-22 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10405 9e2160740f8cb9fe98cb08bca12f57fb 215 SUPERFAMILY SSF161098 18 205 7.85E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10405 9e2160740f8cb9fe98cb08bca12f57fb 215 Gene3D G3DSA:1.10.3720.10 3 215 8.3E-29 T 29-03-2018 CFE88_RS10915 779e020039560a7037557a53c74a742a 319 SUPERFAMILY SSF54001 216 318 2.55E-19 T 29-03-2018 CFE88_RS10915 779e020039560a7037557a53c74a742a 319 Pfam PF05257 CHAP domain 214 295 1.6E-13 T 29-03-2018 IPR007921 CHAP domain CFE88_RS06835 a494e007c09bed265f7d3ee07d7ccc9d 106 Gene3D G3DSA:3.40.30.30 2 103 4.5E-41 T 29-03-2018 CFE88_RS06835 a494e007c09bed265f7d3ee07d7ccc9d 106 PIRSF PIRSF010603 1 106 8.2E-43 T 29-03-2018 IPR009190 Protein of unknown function DUF1462 CFE88_RS06835 a494e007c09bed265f7d3ee07d7ccc9d 106 Pfam PF07315 Protein of unknown function (DUF1462) 7 101 9.6E-41 T 29-03-2018 IPR009190 Protein of unknown function DUF1462 CFE88_RS06835 a494e007c09bed265f7d3ee07d7ccc9d 106 SUPERFAMILY SSF52833 1 104 1.48E-45 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS08160 43da567fc4586038db512d6f1e9b67b4 314 SUPERFAMILY SSF81345 7 310 7.85E-60 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS08160 43da567fc4586038db512d6f1e9b67b4 314 Gene3D G3DSA:1.10.3470.10 5 313 5.1E-53 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS08160 43da567fc4586038db512d6f1e9b67b4 314 Pfam PF01032 FecCD transport family 8 310 1.5E-67 T 29-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 Gene3D G3DSA:1.10.1040.10 181 331 1.2E-57 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 SUPERFAMILY SSF51735 3 179 1.11E-52 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 320 2.6E-56 T 29-03-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 323 36.303 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PIRSF PIRSF000114 1 332 6.3E-111 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 SUPERFAMILY SSF48179 180 332 1.04E-59 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 Gene3D G3DSA:3.40.50.720 1 180 7.9E-38 T 29-03-2018 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3 160 1.6E-50 T 29-03-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS03865 a6988ca163bfc978d0f98376cd6cc4bd 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 239 256 7.1E-40 T 29-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 CFE88_RS02630 7414dbfaa781161c6694e02ca0981a96 198 SUPERFAMILY SSF50249 89 197 8.32E-31 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02630 7414dbfaa781161c6694e02ca0981a96 198 Gene3D G3DSA:2.40.50.140 88 198 4.7E-38 T 29-03-2018 CFE88_RS02630 7414dbfaa781161c6694e02ca0981a96 198 Pfam PF01588 Putative tRNA binding domain 93 194 4.2E-25 T 29-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CFE88_RS02630 7414dbfaa781161c6694e02ca0981a96 198 Pfam PF14794 Domain of unknown function (DUF4479) 23 88 2.3E-22 T 29-03-2018 IPR027855 Domain of unknown function DUF4479 CFE88_RS02630 7414dbfaa781161c6694e02ca0981a96 198 Gene3D G3DSA:3.30.1940.10 22 87 2.4E-22 T 29-03-2018 IPR027855 Domain of unknown function DUF4479 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Gene3D G3DSA:3.40.50.300 80 353 8.8E-91 T 29-03-2018 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 SUPERFAMILY SSF52540 81 353 7.98E-89 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 77 3.9E-23 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 SUPERFAMILY SSF47917 351 466 1.96E-50 T 29-03-2018 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 339 348 - T 29-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 SUPERFAMILY SSF50615 2 78 2.55E-25 T 29-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 SMART SM00382 147 332 4.4E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 466 57.124 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Gene3D G3DSA:2.40.10.170 1 78 1.7E-29 T 29-03-2018 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 466 3.3E-255 T 29-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Gene3D G3DSA:1.10.1140.10 354 464 3.5E-42 T 29-03-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS01260 90c6c0a113026a52c41152b8aa4501ac 470 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 348 1.7E-67 T 29-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Pfam PF00206 Lyase 8 302 3.4E-75 T 29-03-2018 IPR022761 Fumarate lyase, N-terminal CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00149 Fumarate lyase superfamily signature 233 260 2.5E-29 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00149 Fumarate lyase superfamily signature 104 122 2.5E-29 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00149 Fumarate lyase superfamily signature 277 293 2.5E-29 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00149 Fumarate lyase superfamily signature 149 167 2.5E-29 T 29-03-2018 IPR000362 Fumarate lyase family CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 277 293 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 103 125 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 195 211 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 312 331 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 144 164 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 PRINTS PR00145 Argininosuccinate lyase family signature 233 257 5.3E-67 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Gene3D G3DSA:1.10.275.10 4 108 8.1E-40 T 29-03-2018 IPR024083 Fumarase/histidase, N-terminal CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Gene3D G3DSA:1.10.40.30 377 434 6.4E-23 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Gene3D G3DSA:1.20.200.10 109 376 4.1E-89 T 29-03-2018 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 SUPERFAMILY SSF48557 6 457 1.01E-150 T 29-03-2018 IPR008948 L-Aspartase-like GO:0003824 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Pfam PF14698 Argininosuccinate lyase C-terminal 365 432 1.6E-23 T 29-03-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 Hamap MF_00006 Argininosuccinate lyase [argH]. 4 455 43.254 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 ProSitePatterns PS00163 Fumarate lyases signature. 277 286 - T 29-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CFE88_RS06720 87a69c29d5f28a64a2cd2b591cb8907d 463 TIGRFAM TIGR00838 argH: argininosuccinate lyase 6 457 1.9E-199 T 29-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 31 450 8.3E-136 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 SUPERFAMILY SSF63418 9 102 3.92E-24 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 SUPERFAMILY SSF53623 105 312 9.55E-52 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Pfam PF01225 Mur ligase family, catalytic domain 25 100 2.5E-14 T 29-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 SUPERFAMILY SSF53244 316 450 5.34E-40 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Gene3D G3DSA:3.40.1390.10 2 95 2.5E-25 T 29-03-2018 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Gene3D G3DSA:3.40.1190.10 96 311 6.9E-56 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 317 394 3.0E-13 T 29-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Gene3D G3DSA:3.90.190.20 314 451 2.2E-46 T 29-03-2018 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 451 34.019 T 29-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS01360 c728e84dc2f40303d73bb0fc312da1bd 451 Pfam PF08245 Mur ligase middle domain 111 294 1.3E-45 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS09245 8324246da188761c3e40164dcca327f3 96 Pfam PF07342 Protein of unknown function (DUF1474) 1 86 1.8E-25 T 29-03-2018 IPR009942 Protein of unknown function DUF1474 CFE88_RS11255 98dbc6f6755dea335e52da58db88976b 616 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 21 610 2.9E-177 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 CFE88_RS11255 98dbc6f6755dea335e52da58db88976b 616 ProSitePatterns PS00850 Glycine radical domain signature. 581 589 - T 29-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CFE88_RS11255 98dbc6f6755dea335e52da58db88976b 616 Gene3D G3DSA:3.20.70.20 26 592 4.0E-193 T 29-03-2018 CFE88_RS11255 98dbc6f6755dea335e52da58db88976b 616 SUPERFAMILY SSF51998 26 590 3.97E-182 T 29-03-2018 CFE88_RS11255 98dbc6f6755dea335e52da58db88976b 616 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 20 610 1.7E-174 T 29-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 CFE88_RS11565 0332532e23fe1c1530544105422e7523 229 Pfam PF04172 LrgB-like family 14 225 4.9E-68 T 29-03-2018 IPR007300 CidB/LrgB family CFE88_RS01295 79fae355e15e08b4b0c3fe9198a4faca 219 Pfam PF06737 Transglycosylase-like domain 142 219 2.7E-27 T 29-03-2018 IPR010618 Transglycosylase-like CFE88_RS01295 79fae355e15e08b4b0c3fe9198a4faca 219 Gene3D G3DSA:1.10.530.10 83 219 1.5E-14 T 29-03-2018 CFE88_RS01295 79fae355e15e08b4b0c3fe9198a4faca 219 SUPERFAMILY SSF53955 143 217 3.15E-17 T 29-03-2018 IPR023346 Lysozyme-like domain CFE88_RS00135 6499e3eb495c4963d7e5321da4fda541 158 Gene3D G3DSA:3.10.129.10 1 138 1.1E-17 T 29-03-2018 CFE88_RS00135 6499e3eb495c4963d7e5321da4fda541 158 SUPERFAMILY SSF54637 1 154 7.47E-37 T 29-03-2018 IPR029069 HotDog domain CFE88_RS00135 6499e3eb495c4963d7e5321da4fda541 158 Pfam PF13279 Thioesterase-like superfamily 12 130 4.3E-18 T 29-03-2018 CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 SUPERFAMILY SSF53271 93 260 1.46E-34 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 Gene3D G3DSA:1.10.10.10 1 73 3.3E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 3 268 2.8E-108 T 29-03-2018 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 10 73 1.0E-21 T 29-03-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 3.7E-31 T 29-03-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 SUPERFAMILY SSF46785 2 74 1.47E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 Gene3D G3DSA:3.40.50.2020 74 274 3.9E-30 T 29-03-2018 CFE88_RS08885 7945ea661d0742d721b64fc075b32175 274 Pfam PF00156 Phosphoribosyl transferase domain 108 264 1.2E-20 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 PRINTS PR00095 Anthranilate synthase component I signature 224 237 1.4E-6 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 PRINTS PR00095 Anthranilate synthase component I signature 318 332 1.4E-6 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 PRINTS PR00095 Anthranilate synthase component I signature 238 251 1.4E-6 T 29-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 Gene3D G3DSA:3.60.120.10 24 383 8.1E-94 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 SUPERFAMILY SSF56322 14 381 8.9E-94 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS07635 0bc00d903bb6a251765c91c3642b0e66 383 Pfam PF00425 chorismate binding enzyme 120 376 2.1E-80 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 SUPERFAMILY SSF54211 79 159 9.61E-27 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 6.9E-30 T 29-03-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 Gene3D G3DSA:3.30.160.20 10 72 5.6E-29 T 29-03-2018 CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 SUPERFAMILY SSF54768 7 76 8.58E-25 T 29-03-2018 CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 163 4.4E-70 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 Gene3D G3DSA:3.30.230.10 77 166 4.7E-33 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 36.727 T 29-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 29-03-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site CFE88_RS00700 4f003fae480d78879358c1cf6f1c9195 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 157 1.6E-32 T 29-03-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 SUPERFAMILY SSF56719 402 639 5.75E-85 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 TIGRFAM TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit 6 645 0.0 T 29-03-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Pfam PF01751 Toprim domain 427 537 1.8E-17 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 SUPERFAMILY SSF54211 226 397 9.67E-54 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 177 2.4E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Gene3D G3DSA:3.30.230.10 226 398 4.4E-56 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Gene3D G3DSA:3.30.565.10 21 225 2.0E-73 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 SMART SM00387 34 178 2.2E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 532 544 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 512 529 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 272 285 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 576 592 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 428 442 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 73 86 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 494 510 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR00418 DNA topoisomerase II family signature 38 53 1.4E-68 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Pfam PF00204 DNA gyrase B 226 396 6.3E-59 T 29-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 SUPERFAMILY SSF55874 9 220 4.98E-66 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 SMART SM00433 38 637 0.0 T 29-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 572 633 2.6E-29 T 29-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 ProSitePatterns PS00177 DNA topoisomerase II signature. 430 438 - T 29-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Gene3D G3DSA:3.40.50.670 407 640 1.7E-91 T 29-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 366 380 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 478 487 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 225 247 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 380 400 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 597 609 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 316 332 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 184 199 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 199 212 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 613 629 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 PRINTS PR01159 DNA gyrase subunit B signature 9 19 2.5E-54 T 29-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CFE88_RS04455 58e98a0286d4add03fc36337da26ea6f 666 Hamap MF_00939 DNA topoisomerase 4 subunit B [parE]. 7 642 50.27 T 29-03-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS09920 2eaa2a41167142e6d5a3028d20c877b9 145 Gene3D G3DSA:3.10.450.130 35 132 3.8E-21 T 29-03-2018 CFE88_RS09920 2eaa2a41167142e6d5a3028d20c877b9 145 Pfam PF07252 Protein of unknown function (DUF1433) 36 124 6.1E-21 T 29-03-2018 IPR009881 Protein of unknown function DUF1433 CFE88_RS08325 3437f653095688c452e84816824d26fa 496 Pfam PF13520 Amino acid permease 23 445 2.6E-40 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS08325 3437f653095688c452e84816824d26fa 496 PIRSF PIRSF006060 1 478 1.3E-72 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS03235 f3016a5acf85ae50e120e339019eae99 146 Gene3D G3DSA:2.40.50.100 60 146 2.9E-16 T 29-03-2018 CFE88_RS03235 f3016a5acf85ae50e120e339019eae99 146 SUPERFAMILY SSF51230 69 145 3.53E-20 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS03235 f3016a5acf85ae50e120e339019eae99 146 Pfam PF00364 Biotin-requiring enzyme 71 144 1.1E-19 T 29-03-2018 IPR000089 Biotin/lipoyl attachment CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 Pfam PF13183 4Fe-4S dicluster domain 176 251 4.5E-9 T 29-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 180 191 - T 29-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 34 142 8.5E-28 T 29-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 SUPERFAMILY SSF46548 139 263 9.59E-26 T 29-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 36 258 3.0E-40 T 29-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 SUPERFAMILY SSF54292 29 137 1.35E-21 T 29-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 Gene3D G3DSA:1.10.1060.10 137 268 3.4E-18 T 29-03-2018 CFE88_RS05615 7af85fe8e2b21f7e161ed7fcb9246ec7 280 Gene3D G3DSA:3.10.20.30 24 136 3.3E-24 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 Pfam PF01047 MarR family 29 87 8.9E-17 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 SUPERFAMILY SSF46785 5 135 4.87E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 2.0E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 2.0E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 2.0E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 2.0E-8 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 SMART SM00347 22 122 6.4E-30 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS06095 1c2aaa9cc8936b2941bd927d02736a95 139 Gene3D G3DSA:1.10.10.10 1 136 1.7E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12245 9c5d30a63135c4bffb6253c470c86c2b 387 Gene3D G3DSA:1.20.1250.20 8 189 2.0E-22 T 29-03-2018 CFE88_RS12245 9c5d30a63135c4bffb6253c470c86c2b 387 Gene3D G3DSA:1.20.1250.20 191 384 4.9E-29 T 29-03-2018 CFE88_RS12245 9c5d30a63135c4bffb6253c470c86c2b 387 SUPERFAMILY SSF103473 10 383 1.22E-60 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12245 9c5d30a63135c4bffb6253c470c86c2b 387 Pfam PF07690 Major Facilitator Superfamily 15 342 2.7E-44 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS04905 8905df9e6ef61a4e113f02eb09031a5d 121 Gene3D G3DSA:1.10.1660.10 2 109 3.3E-22 T 29-03-2018 CFE88_RS04905 8905df9e6ef61a4e113f02eb09031a5d 121 SUPERFAMILY SSF46955 13 86 4.03E-19 T 29-03-2018 IPR009061 Putative DNA-binding domain CFE88_RS04905 8905df9e6ef61a4e113f02eb09031a5d 121 Pfam PF13411 MerR HTH family regulatory protein 13 78 2.6E-18 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS04905 8905df9e6ef61a4e113f02eb09031a5d 121 SMART SM00422 13 81 3.8E-23 T 29-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 Pfam PF01425 Amidase 24 465 1.3E-158 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 29-03-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 475 3.7E-200 T 29-03-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 92.862 T 29-03-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 SUPERFAMILY SSF75304 1 479 3.79E-159 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CFE88_RS01830 f9dd9ea3d5241871b1fbb8661689fbd1 485 Gene3D G3DSA:3.90.1300.10 1 485 9.4E-170 T 29-03-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CFE88_RS06375 5b957f05f610ed097b16c50518618547 249 Gene3D G3DSA:3.90.1720.10 94 227 7.9E-12 T 29-03-2018 CFE88_RS06375 5b957f05f610ed097b16c50518618547 249 SUPERFAMILY SSF54001 97 234 8.17E-16 T 29-03-2018 CFE88_RS06375 5b957f05f610ed097b16c50518618547 249 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 107 213 1.6E-6 T 29-03-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CFE88_RS11950 bb922148cd4593292250f2149ee43d38 88 Pfam PF02517 CAAX protease self-immunity 2 86 5.8E-10 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS05110 b40971d41fcfd6c5c681d70e2e3b6975 94 Gene3D G3DSA:3.30.1230.10 1 92 1.4E-25 T 29-03-2018 IPR007393 Domain of unknown function DUF448 CFE88_RS05110 b40971d41fcfd6c5c681d70e2e3b6975 94 Pfam PF04296 Protein of unknown function (DUF448) 9 83 1.4E-23 T 29-03-2018 IPR007393 Domain of unknown function DUF448 CFE88_RS05110 b40971d41fcfd6c5c681d70e2e3b6975 94 SUPERFAMILY SSF64376 4 91 3.27E-25 T 29-03-2018 IPR007393 Domain of unknown function DUF448 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 504 537 0.42 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 656 693 0.0038 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 702 750 0.0034 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 606 647 4.7E-7 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 547 594 2.5E-4 T 29-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 SMART SM00434 8 461 3.6E-260 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Gene3D G3DSA:1.10.268.10 341 483 7.4E-49 T 29-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Gene3D G3DSA:3.30.1360.40 233 329 3.4E-31 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 29 468 3.7E-153 T 29-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 TIGRFAM TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit 5 742 0.0 T 29-03-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 SUPERFAMILY SSF101904 497 798 2.62E-81 T 29-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Gene3D G3DSA:2.120.10.90 494 798 7.1E-70 T 29-03-2018 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Gene3D G3DSA:3.90.199.10 31 212 6.3E-76 T 29-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 Hamap MF_00937 DNA topoisomerase 4 subunit A [parC]. 4 800 32.566 T 29-03-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CFE88_RS04450 afebed2e42a95284612c4efeedc0a8f6 800 SUPERFAMILY SSF56719 28 481 3.92E-167 T 29-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 Pfam PF01751 Toprim domain 6 78 3.0E-5 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 SMART SM00493 4 77 1.9E-5 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 2 175 1.7E-54 T 29-03-2018 IPR004466 Ribonuclease M5 GO:0043822 CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 Pfam PF13331 Domain of unknown function (DUF4093) 91 175 4.1E-26 T 29-03-2018 IPR025156 Ribonuclease M5, C-terminal domain CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 Hamap MF_01469 Ribonuclease M5 [rnmV]. 2 177 29.466 T 29-03-2018 IPR004466 Ribonuclease M5 GO:0043822 CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 Gene3D G3DSA:3.40.1360.20 1 124 1.8E-18 T 29-03-2018 CFE88_RS08905 7fc0728057344dbb7b49594be879d018 181 SUPERFAMILY SSF110455 1 113 2.51E-35 T 29-03-2018 CFE88_RS06505 b11211eb779b8225a4596bf9f85d3912 164 SUPERFAMILY SSF160424 3 163 1.23E-57 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS06505 b11211eb779b8225a4596bf9f85d3912 164 Gene3D G3DSA:3.30.500.20 4 116 1.1E-36 T 29-03-2018 CFE88_RS06505 b11211eb779b8225a4596bf9f85d3912 164 Pfam PF04634 Protein of unknown function, DUF600 7 151 8.5E-48 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS06505 b11211eb779b8225a4596bf9f85d3912 164 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 1 157 2.6E-66 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 72 156 2.4E-28 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 SUPERFAMILY SSF46767 71 158 1.83E-24 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 73 158 8.4E-28 T 29-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 Gene3D G3DSA:3.30.160.70 1 67 6.2E-9 T 29-03-2018 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 157 34.409 T 29-03-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 SUPERFAMILY SSF53155 1 77 1.41E-14 T 29-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 Gene3D G3DSA:1.10.10.10 68 159 1.7E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11530 5b123899bf58300673958a7b281bfe3f 172 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 127 133 - T 29-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CFE88_RS06060 3b5ddefab2d267014b35ae4b7377e205 96 TIGRFAM TIGR02901 QoxD: cytochrome aa3 quinol oxidase, subunit IV 5 91 2.1E-31 T 29-03-2018 IPR014250 Quinol oxidase subunit IV GO:0016021|GO:0016682|GO:0042773 CFE88_RS06060 3b5ddefab2d267014b35ae4b7377e205 96 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 8 81 4.2E-12 T 29-03-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 295 5.7E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 PRINTS PR00344 Bacterial sensor protein C-terminal signature 224 238 5.7E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 PRINTS PR00344 Bacterial sensor protein C-terminal signature 258 276 5.7E-5 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 SMART SM00387 190 298 1.8E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 197 297 2.0E-18 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 SUPERFAMILY SSF55874 150 294 1.44E-26 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS11135 99abad13466c9761c1c368ec7336d371 298 Gene3D G3DSA:3.30.565.10 108 295 5.7E-27 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 510 3.9E-20 T 29-03-2018 IPR003395 RecF/RecN/SMC, N-terminal CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 SUPERFAMILY SSF52540 296 507 9.16E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 SUPERFAMILY SSF52540 3 50 9.16E-29 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 554 5.7E-164 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 Gene3D G3DSA:3.40.50.300 335 519 1.6E-15 T 29-03-2018 CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 SUPERFAMILY SSF52540 1 219 1.52E-60 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 PIRSF PIRSF003128 1 558 5.3E-175 T 29-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CFE88_RS03685 f0c23a4cf5dd384dcfe7a89fffcd5b52 558 Gene3D G3DSA:3.40.50.300 1 181 5.7E-28 T 29-03-2018 CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 4 359 1.2E-113 T 29-03-2018 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 SUPERFAMILY SSF102114 5 371 1.12E-115 T 29-03-2018 CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 Pfam PF06969 HemN C-terminal domain 299 359 9.7E-14 T 29-03-2018 IPR010723 HemN, C-terminal CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 Pfam PF04055 Radical SAM superfamily 8 171 2.8E-20 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 Gene3D G3DSA:3.20.20.70 5 324 1.5E-52 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS03335 a4878b36e7c50b1fec5a46c56be3106d 374 SMART SM00729 3 217 4.0E-57 T 29-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 CFE88_RS00460 dcab9823d3c1519bc2e96f221f501417 313 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 302 6.8E-50 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS00460 dcab9823d3c1519bc2e96f221f501417 313 Gene3D G3DSA:3.90.245.10 1 313 2.6E-63 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS00460 dcab9823d3c1519bc2e96f221f501417 313 SUPERFAMILY SSF53590 1 309 5.1E-82 T 29-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CFE88_RS08255 38adb6db3eb358d3b8843bc42afb7537 314 Gene3D G3DSA:3.40.190.100 141 257 4.4E-25 T 29-03-2018 CFE88_RS08255 38adb6db3eb358d3b8843bc42afb7537 314 SUPERFAMILY SSF53850 43 310 6.33E-54 T 29-03-2018 CFE88_RS08255 38adb6db3eb358d3b8843bc42afb7537 314 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 45 298 3.3E-48 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CFE88_RS08255 38adb6db3eb358d3b8843bc42afb7537 314 Gene3D G3DSA:3.40.190.10 44 140 4.2E-7 T 29-03-2018 CFE88_RS06940 41058202bf786e5176cdda9d0dd49382 465 SUPERFAMILY SSF101960 32 462 7.85E-141 T 29-03-2018 CFE88_RS06940 41058202bf786e5176cdda9d0dd49382 465 Pfam PF01458 Uncharacterized protein family (UPF0051) 211 436 6.8E-74 T 29-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CFE88_RS06940 41058202bf786e5176cdda9d0dd49382 465 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 10 456 4.5E-231 T 29-03-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 CFE88_RS11880 fa64797f1e9f551e5a485bfd27a2df1b 135 SUPERFAMILY SSF55811 4 132 3.25E-30 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS11880 fa64797f1e9f551e5a485bfd27a2df1b 135 Pfam PF00293 NUDIX domain 12 129 2.4E-14 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CFE88_RS11880 fa64797f1e9f551e5a485bfd27a2df1b 135 Gene3D G3DSA:3.90.79.10 4 135 1.1E-25 T 29-03-2018 CFE88_RS11880 fa64797f1e9f551e5a485bfd27a2df1b 135 PRINTS PR00502 NUDIX hydrolase family signature 38 52 1.5E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CFE88_RS11880 fa64797f1e9f551e5a485bfd27a2df1b 135 PRINTS PR00502 NUDIX hydrolase family signature 52 67 1.5E-5 T 29-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 29-03-2018 IPR018201 Beta-ketoacyl synthase, active site CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 SMART SM00825 Beta-ketoacyl synthase 7 414 2.6E-15 T 29-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 5 410 4.3E-193 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 SUPERFAMILY SSF53901 215 412 3.49E-70 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 SUPERFAMILY SSF53901 4 252 1.24E-78 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 368 5.4E-37 T 29-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 247 3.4E-62 T 29-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 Gene3D G3DSA:3.40.47.10 1 259 1.4E-79 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 Gene3D G3DSA:3.40.47.10 263 414 1.8E-51 T 29-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 CFE88_RS06630 31821ecab12762faf12c188d8ad2897a 414 PIRSF PIRSF000447 2 414 2.1E-183 T 29-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 Pfam PF04079 Segregation and condensation complex subunit ScpB 5 156 4.6E-42 T 29-03-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 5 177 2.4E-39 T 29-03-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 Gene3D G3DSA:1.10.10.10 76 165 4.0E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 SUPERFAMILY SSF46785 76 148 8.82E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 Gene3D G3DSA:1.10.10.10 2 75 1.8E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 PIRSF PIRSF019345 1 179 3.1E-39 T 29-03-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CFE88_RS03790 55546c0d5d2c6dcbf21b51d21fa9b2bb 180 SUPERFAMILY SSF46785 4 72 1.9E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00905 8f12e89544bdb5c4d1fbc74bb77bf6fb 104 SUPERFAMILY SSF54909 1 100 9.49E-26 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS00905 8f12e89544bdb5c4d1fbc74bb77bf6fb 104 Gene3D G3DSA:3.30.70.100 1 104 1.4E-17 T 29-03-2018 CFE88_RS00905 8f12e89544bdb5c4d1fbc74bb77bf6fb 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 8.4E-15 T 29-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CFE88_RS00905 8f12e89544bdb5c4d1fbc74bb77bf6fb 104 Hamap MF_01272 Heme oxygenase (staphylobilin-producing) [isdG]. 1 103 29.473 T 29-03-2018 IPR023953 Heme oxygenase IsdG GO:0004392|GO:0033212|GO:0055114 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 Gene3D G3DSA:3.40.630.10 1 412 2.0E-46 T 29-03-2018 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 SUPERFAMILY SSF55031 209 319 1.08E-41 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 Pfam PF07687 Peptidase dimerisation domain 208 305 3.1E-9 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 PIRSF PIRSF037215 1 408 7.9E-180 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 SUPERFAMILY SSF53187 322 406 5.8E-76 T 29-03-2018 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 SUPERFAMILY SSF53187 3 210 5.8E-76 T 29-03-2018 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 177 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 29-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 Hamap MF_00550 Peptidase T [pepT]. 2 404 54.129 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 Pfam PF01546 Peptidase family M20/M25/M40 139 402 1.8E-11 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS07470 81da8bf12b646708c7faca2c6f63311a 412 TIGRFAM TIGR01882 peptidase-T: peptidase T 3 405 3.0E-166 T 29-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CFE88_RS10795 9bff5f79593cce9e4ce0e57db98fc10b 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 139 1.0E-51 T 29-03-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CFE88_RS10795 9bff5f79593cce9e4ce0e57db98fc10b 142 Gene3D G3DSA:3.30.300.20 46 142 3.7E-24 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS10795 9bff5f79593cce9e4ce0e57db98fc10b 142 SUPERFAMILY SSF82784 3 139 5.23E-39 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS10795 9bff5f79593cce9e4ce0e57db98fc10b 142 Pfam PF02566 OsmC-like protein 42 137 1.8E-17 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS10795 9bff5f79593cce9e4ce0e57db98fc10b 142 Gene3D G3DSA:2.20.25.10 2 43 7.7E-13 T 29-03-2018 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 296 3.2E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 315 3.2E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 PRINTS PR00344 Bacterial sensor protein C-terminal signature 261 271 3.2E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 PRINTS PR00344 Bacterial sensor protein C-terminal signature 243 257 3.2E-10 T 29-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 SUPERFAMILY SSF55874 161 316 3.14E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07685 2050d8a246390cd9cede158081235896 321 Gene3D G3DSA:3.30.565.10 165 316 3.6E-35 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07685 2050d8a246390cd9cede158081235896 321 SMART SM00387 204 318 7.8E-31 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07685 2050d8a246390cd9cede158081235896 321 Gene3D G3DSA:1.10.287.130 83 153 3.8E-12 T 29-03-2018 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 SMART SM00388 92 159 5.8E-11 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 Pfam PF00512 His Kinase A (phospho-acceptor) domain 93 150 2.4E-10 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS07685 2050d8a246390cd9cede158081235896 321 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 208 316 1.4E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS07685 2050d8a246390cd9cede158081235896 321 SUPERFAMILY SSF47384 75 159 8.24E-14 T 29-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CFE88_RS07370 b686362f64caebdc998a43be08ff6381 279 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 10 255 3.0E-74 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CFE88_RS07370 b686362f64caebdc998a43be08ff6381 279 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 7 260 17.146 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CFE88_RS07370 b686362f64caebdc998a43be08ff6381 279 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 136 148 - T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CFE88_RS07370 b686362f64caebdc998a43be08ff6381 279 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 6 260 6.0E-71 T 29-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 CFE88_RS08215 05dbc0f9e11f3ef2dcfcfa723dc0b328 278 SUPERFAMILY SSF52402 19 228 3.09E-29 T 29-03-2018 CFE88_RS08215 05dbc0f9e11f3ef2dcfcfa723dc0b328 278 PIRSF PIRSF006661 4 276 3.4E-103 T 29-03-2018 IPR005232 Lactate racemization operon protein LarE CFE88_RS08215 05dbc0f9e11f3ef2dcfcfa723dc0b328 278 Gene3D G3DSA:3.40.50.620 9 241 6.8E-21 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08215 05dbc0f9e11f3ef2dcfcfa723dc0b328 278 Pfam PF02540 NAD synthase 20 90 4.9E-6 T 29-03-2018 IPR022310 NAD/GMP synthase CFE88_RS08215 05dbc0f9e11f3ef2dcfcfa723dc0b328 278 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 12 264 3.3E-65 T 29-03-2018 IPR005232 Lactate racemization operon protein LarE CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 231 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 46 63 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 132 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 183 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 212 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 248 268 6.7E-38 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 54 284 4.3E-56 T 29-03-2018 CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 SUPERFAMILY SSF51735 43 285 4.0E-77 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 Gene3D G3DSA:3.40.50.720 3 288 1.9E-71 T 29-03-2018 CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 180 208 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 132 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11500 c8b5f754f145dc5eab55e55032bc6e39 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 193 212 1.9E-10 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS01605 49157b2641d3fcc702cf5b5e67602c42 25 Pfam PF05372 Delta lysin family 1 25 1.0E-20 T 29-03-2018 IPR008034 Delta-hemolysin GO:0005576|GO:0019836 CFE88_RS01825 2359e7aab23f256a21ab585dd63638b7 100 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 4.4E-28 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CFE88_RS01825 2359e7aab23f256a21ab585dd63638b7 100 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 24.948 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CFE88_RS01825 2359e7aab23f256a21ab585dd63638b7 100 SUPERFAMILY SSF141000 3 94 2.62E-29 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CFE88_RS01825 2359e7aab23f256a21ab585dd63638b7 100 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 5.8E-20 T 29-03-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 SUPERFAMILY SSF102712 124 197 3.66E-6 T 29-03-2018 CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 SUPERFAMILY SSF47781 15 89 3.28E-7 T 29-03-2018 IPR010994 RuvA domain 2-like CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 29-03-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 Pfam PF04002 RadC-like JAB domain 103 222 2.4E-43 T 29-03-2018 IPR025657 RadC-like JAB domain CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 223 3.0E-68 T 29-03-2018 IPR001405 RadC protein CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 Gene3D G3DSA:3.40.140.10 102 224 6.9E-46 T 29-03-2018 CFE88_RS03005 27b9878480e2e930ee3e7b91a769ea3d 226 Gene3D G3DSA:1.10.150.20 40 101 0.002 T 29-03-2018 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 6 359 40.914 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 Gene3D G3DSA:2.40.30.10 278 371 4.7E-26 T 29-03-2018 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 Pfam PF03054 tRNA methyl transferase 7 358 3.0E-148 T 29-03-2018 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 Gene3D G3DSA:3.40.50.620 2 212 5.7E-71 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 358 2.9E-139 T 29-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 Gene3D G3DSA:2.30.30.280 213 276 7.0E-26 T 29-03-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 CFE88_RS03165 3675f1b68e5269b57ac747dee104ad71 372 SUPERFAMILY SSF52402 7 243 1.94E-60 T 29-03-2018 CFE88_RS05325 c8b8a0631e9c10cfe2d086014bfd196a 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 18.162 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS05325 c8b8a0631e9c10cfe2d086014bfd196a 62 SUPERFAMILY SSF143800 1 60 9.81E-23 T 29-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05325 c8b8a0631e9c10cfe2d086014bfd196a 62 Pfam PF00830 Ribosomal L28 family 3 58 1.3E-18 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05325 c8b8a0631e9c10cfe2d086014bfd196a 62 Gene3D G3DSA:2.30.170.40 2 61 3.5E-18 T 29-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS05325 c8b8a0631e9c10cfe2d086014bfd196a 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 5.7E-21 T 29-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS06345 fd217960e4775d71fd54aab311e1a0da 224 Pfam PF04276 Protein of unknown function (DUF443) 24 217 2.6E-39 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06345 fd217960e4775d71fd54aab311e1a0da 224 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 19 217 4.1E-49 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 139 2.1E-42 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 142 25.229 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 SMART SM00732 4 107 1.5E-30 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 SUPERFAMILY SSF53098 5 141 3.95E-41 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 Gene3D G3DSA:3.30.420.140 2 142 3.4E-41 T 29-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CFE88_RS03190 7ce8b0a4ca3bbb7b58bce208dcd42d29 142 Pfam PF03652 Holliday junction resolvase 5 140 1.6E-41 T 29-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CFE88_RS00290 4df53c1c0e3f8da84fb929d5c7de2c6f 474 Pfam PF02378 Phosphotransferase system, EIIC 128 409 1.8E-32 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS00290 4df53c1c0e3f8da84fb929d5c7de2c6f 474 Pfam PF00367 phosphotransferase system, EIIB 9 42 2.5E-11 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS00290 4df53c1c0e3f8da84fb929d5c7de2c6f 474 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS00290 4df53c1c0e3f8da84fb929d5c7de2c6f 474 SUPERFAMILY SSF55604 7 80 5.36E-17 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS00290 4df53c1c0e3f8da84fb929d5c7de2c6f 474 Gene3D G3DSA:3.30.1360.60 5 81 3.1E-23 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS07035 a066d210bb79c69572f4800b28c12aa8 140 SUPERFAMILY SSF82784 1 137 2.62E-35 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS07035 a066d210bb79c69572f4800b28c12aa8 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 136 5.1E-46 T 29-03-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CFE88_RS07035 a066d210bb79c69572f4800b28c12aa8 140 Gene3D G3DSA:2.20.25.10 1 41 4.5E-10 T 29-03-2018 CFE88_RS07035 a066d210bb79c69572f4800b28c12aa8 140 Pfam PF02566 OsmC-like protein 37 134 1.5E-18 T 29-03-2018 IPR003718 OsmC/Ohr family CFE88_RS07035 a066d210bb79c69572f4800b28c12aa8 140 Gene3D G3DSA:3.30.300.20 42 140 3.0E-23 T 29-03-2018 IPR015946 K homology domain-like, alpha/beta CFE88_RS04975 027dbfb479e335653dd71a9cad56b1e9 121 SUPERFAMILY SSF158622 1 120 8.63E-28 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS04975 027dbfb479e335653dd71a9cad56b1e9 121 Gene3D G3DSA:1.20.1500.10 6 114 9.3E-23 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS04975 027dbfb479e335653dd71a9cad56b1e9 121 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 7 111 1.2E-17 T 29-03-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS04975 027dbfb479e335653dd71a9cad56b1e9 121 PIRSF PIRSF021287 1 121 1.6E-45 T 29-03-2018 IPR016783 Biofilm formation YmcA CFE88_RS09240 34c9bdf8666ee3c118a07962da95633b 290 Pfam PF08708 Primase C terminal 1 (PriCT-1) 225 287 8.1E-12 T 29-03-2018 IPR014820 Primase, C-terminal 1 CFE88_RS09240 34c9bdf8666ee3c118a07962da95633b 290 SMART SM00942 224 288 9.3E-20 T 29-03-2018 IPR014820 Primase, C-terminal 1 CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 Gene3D G3DSA:3.40.50.880 1 188 2.4E-37 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 PIRSF PIRSF000495 1 188 5.7E-63 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 185 3.2E-64 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 SUPERFAMILY SSF52317 2 185 5.56E-44 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 187 33.225 T 29-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CFE88_RS10650 4298fb5179cbb6e654cfe5f92e0128a1 192 Pfam PF00117 Glutamine amidotransferase class-I 4 181 2.4E-20 T 29-03-2018 IPR017926 Glutamine amidotransferase CFE88_RS01555 fe530950629967d9051557e4fbc79e34 74 Pfam PF01206 Sulfurtransferase TusA 5 73 2.8E-17 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS01555 fe530950629967d9051557e4fbc79e34 74 Gene3D G3DSA:3.30.110.40 2 73 8.4E-17 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS01555 fe530950629967d9051557e4fbc79e34 74 SUPERFAMILY SSF64307 2 73 3.66E-20 T 29-03-2018 IPR001455 TusA-like domain CFE88_RS07610 ee7387073885dd99dd9683741a57e73f 646 Pfam PF00884 Sulfatase 247 539 3.8E-31 T 29-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 CFE88_RS07610 ee7387073885dd99dd9683741a57e73f 646 Gene3D G3DSA:3.40.720.10 239 549 9.7E-38 T 29-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 CFE88_RS07610 ee7387073885dd99dd9683741a57e73f 646 PIRSF PIRSF005091 1 624 4.7E-180 T 29-03-2018 IPR012160 Lipoteichoic acid synthase-like CFE88_RS07610 ee7387073885dd99dd9683741a57e73f 646 SUPERFAMILY SSF53649 245 637 4.49E-69 T 29-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 Pfam PF00107 Zinc-binding dehydrogenase 156 290 3.0E-19 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 SMART SM00829 17 329 2.3E-4 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 SUPERFAMILY SSF50129 2 165 6.73E-35 T 29-03-2018 IPR011032 GroES-like CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 Gene3D G3DSA:3.40.50.720 147 273 1.2E-25 T 29-03-2018 CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 Gene3D G3DSA:3.90.180.10 1 146 4.1E-33 T 29-03-2018 CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 SUPERFAMILY SSF51735 122 296 2.15E-48 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS00840 c7266408c098efa337c66f1a5f58155f 334 Pfam PF16884 N-terminal domain of oxidoreductase 5 110 2.3E-30 T 29-03-2018 CFE88_RS12565 684a1f28c0ceac992bf5d04487c7fbeb 40 SUPERFAMILY SSF56784 2 30 4.71E-6 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12565 684a1f28c0ceac992bf5d04487c7fbeb 40 Pfam PF08282 haloacid dehalogenase-like hydrolase 2 31 7.8E-6 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12565 684a1f28c0ceac992bf5d04487c7fbeb 40 Gene3D G3DSA:3.40.50.1000 1 32 5.3E-4 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 ProSitePatterns PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3. 368 381 - T 29-03-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 Pfam PF00368 Hydroxymethylglutaryl-coenzyme A reductase 22 382 3.4E-103 T 29-03-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 TIGRFAM TIGR00532 HMG_CoA_R_NAD: hydroxymethylglutaryl-CoA reductase, degradative 3 381 1.7E-102 T 29-03-2018 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type GO:0015936|GO:0016616|GO:0050662 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 ProSitePatterns PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1. 171 185 - T 29-03-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 Gene3D G3DSA:3.90.770.10 2 120 5.3E-20 T 29-03-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 Gene3D G3DSA:3.90.770.10 225 387 1.7E-33 T 29-03-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 SUPERFAMILY SSF55035 109 215 9.68E-32 T 29-03-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 Gene3D G3DSA:3.30.70.420 121 215 1.4E-28 T 29-03-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 SUPERFAMILY SSF56542 225 424 9.16E-102 T 29-03-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 SUPERFAMILY SSF56542 6 117 9.16E-102 T 29-03-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 169 187 7.2E-11 T 29-03-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 75 95 7.2E-11 T 29-03-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 310 331 7.2E-11 T 29-03-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS11540 d518fff3db265b411a48e3b00cba511c 425 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 48 69 7.2E-11 T 29-03-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 Pfam PF05257 CHAP domain 156 243 3.6E-15 T 29-03-2018 IPR007921 CHAP domain CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 SMART SM00257 49 92 2.1E-9 T 29-03-2018 IPR018392 LysM domain CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 Pfam PF01476 LysM domain 50 91 7.3E-10 T 29-03-2018 IPR018392 LysM domain CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 SUPERFAMILY SSF54001 144 255 3.04E-20 T 29-03-2018 CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 Gene3D G3DSA:3.10.350.10 42 131 2.8E-13 T 29-03-2018 CFE88_RS07405 333f434cfbf4bd9c1c4cab02426a0b5a 266 SUPERFAMILY SSF54106 48 91 3.92E-9 T 29-03-2018 IPR018392 LysM domain CFE88_RS10755 91be365a11162e22f2f31d46317d31c7 446 Hamap MF_01473 Glycosyltransferase stabilizing protein Gtf2 [gtf2]. 1 441 33.822 T 29-03-2018 IPR014268 Glycosyltransferase-stabilising protein Gtf2 GO:0031647 CFE88_RS10755 91be365a11162e22f2f31d46317d31c7 446 TIGRFAM TIGR02919 TIGR02919: accessory Sec system glycosyltransferase GtfB 1 440 4.5E-198 T 29-03-2018 IPR014268 Glycosyltransferase-stabilising protein Gtf2 GO:0031647 CFE88_RS10755 91be365a11162e22f2f31d46317d31c7 446 Gene3D G3DSA:3.40.50.2000 259 430 7.4E-6 T 29-03-2018 CFE88_RS08935 41b2b66110bface6b49a6ca54a28e7d5 115 SUPERFAMILY SSF90257 8 62 9.68E-5 T 29-03-2018 CFE88_RS08935 41b2b66110bface6b49a6ca54a28e7d5 115 PIRSF PIRSF021439 1 115 5.5E-34 T 29-03-2018 IPR010377 Initiation control protein YabA GO:0006260 CFE88_RS08935 41b2b66110bface6b49a6ca54a28e7d5 115 Pfam PF06156 Initiation control protein YabA 2 111 4.7E-29 T 29-03-2018 IPR010377 Initiation control protein YabA GO:0006260 CFE88_RS08935 41b2b66110bface6b49a6ca54a28e7d5 115 Hamap MF_01159 Initiation-control protein YabA. 1 115 22.52 T 29-03-2018 IPR010377 Initiation control protein YabA GO:0006260 CFE88_RS04125 cfb6dd88314cd164a8b5ab9193c8af25 204 Pfam PF01569 PAP2 superfamily 86 200 8.0E-19 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS04125 cfb6dd88314cd164a8b5ab9193c8af25 204 SMART SM00014 84 195 6.3E-22 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS04125 cfb6dd88314cd164a8b5ab9193c8af25 204 SUPERFAMILY SSF48317 4 200 4.47E-36 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS04125 cfb6dd88314cd164a8b5ab9193c8af25 204 Gene3D G3DSA:1.20.144.10 34 199 1.8E-24 T 29-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 Gene3D G3DSA:3.40.50.300 118 337 8.5E-22 T 29-03-2018 CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 Pfam PF08706 D5 N terminal like 56 150 2.2E-8 T 29-03-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 TIGRFAM TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain 102 409 1.2E-64 T 29-03-2018 IPR006500 DNA primase, phage/plasmid CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 SUPERFAMILY SSF52540 140 308 8.15E-23 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 SMART SM00885 31 152 7.9E-21 T 29-03-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal CFE88_RS07210 37060c6b8ddaf4c315320f75a8890a02 456 Pfam PF03288 Poxvirus D5 protein-like 358 438 8.2E-7 T 29-03-2018 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal CFE88_RS04500 97d05414719129d2bc9bb33f1dd60ec5 162 PIRSF PIRSF021441 6 162 7.8E-70 T 29-03-2018 IPR031306 CcdC protein CFE88_RS04500 97d05414719129d2bc9bb33f1dd60ec5 162 Pfam PF07301 Protein of unknown function (DUF1453) 13 156 1.2E-58 T 29-03-2018 IPR009916 Protein of unknown function DUF1453 CFE88_RS10095 21cb2fe72627fbcefd8d647a6e184fd7 164 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 73 163 8.1E-28 T 29-03-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 CFE88_RS01375 3ff2da0e288d55d4c084c47b786da19b 501 Pfam PF03703 Bacterial PH domain 259 345 4.7E-8 T 29-03-2018 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 3ff2da0e288d55d4c084c47b786da19b 501 Pfam PF03703 Bacterial PH domain 67 140 7.3E-13 T 29-03-2018 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 3ff2da0e288d55d4c084c47b786da19b 501 Pfam PF03703 Bacterial PH domain 412 492 1.4E-4 T 29-03-2018 IPR005182 Domain of unknown function DUF304 CFE88_RS01375 3ff2da0e288d55d4c084c47b786da19b 501 PIRSF PIRSF026631 1 501 1.4E-137 T 29-03-2018 IPR014529 Uncharacterised conserved protein UCP026631 CFE88_RS02255 623c29f8046a32de9786c2b0b5e2233f 376 Pfam PF04286 Protein of unknown function (DUF445) 12 375 5.0E-76 T 29-03-2018 IPR007383 Protein of unknown function DUF445 CFE88_RS02255 623c29f8046a32de9786c2b0b5e2233f 376 PIRSF PIRSF032178 1 376 1.2E-135 T 29-03-2018 IPR016991 Protein of unknown function UCP032178 CFE88_RS09425 4995b31d47ee9e21b935fbe7a6300bcd 119 Gene3D G3DSA:3.40.250.10 3 119 1.0E-17 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09425 4995b31d47ee9e21b935fbe7a6300bcd 119 SMART SM00450 15 114 5.3E-5 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09425 4995b31d47ee9e21b935fbe7a6300bcd 119 SUPERFAMILY SSF52821 13 117 1.51E-16 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS09425 4995b31d47ee9e21b935fbe7a6300bcd 119 Pfam PF00581 Rhodanese-like domain 24 109 7.8E-7 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10185 2d0a0ca3a240461beea61ab14390db0e 231 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS10185 2d0a0ca3a240461beea61ab14390db0e 231 Gene3D G3DSA:3.40.50.300 1 231 3.0E-50 T 29-03-2018 CFE88_RS10185 2d0a0ca3a240461beea61ab14390db0e 231 SUPERFAMILY SSF52540 3 212 4.47E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10185 2d0a0ca3a240461beea61ab14390db0e 231 SMART SM00382 28 199 1.5E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS10185 2d0a0ca3a240461beea61ab14390db0e 231 Pfam PF00005 ABC transporter 19 151 6.5E-26 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04035 cb6da377d32c3ac939d6c5ffb144d016 234 Pfam PF02592 Putative vitamin uptake transporter 57 217 1.2E-42 T 29-03-2018 IPR003744 Queuosine precursor transporter CFE88_RS04035 cb6da377d32c3ac939d6c5ffb144d016 234 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 26 223 8.7E-57 T 29-03-2018 IPR003744 Queuosine precursor transporter CFE88_RS08105 3acf9e8bd1e39b428670cc6f748f02de 74 Pfam PF11148 Protein of unknown function (DUF2922) 3 69 7.8E-14 T 29-03-2018 IPR021321 Protein of unknown function DUF2922 CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 Gene3D G3DSA:2.40.100.10 87 221 7.0E-52 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 Gene3D G3DSA:3.30.1360.40 1 86 6.3E-12 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 SMART SM00796 1 203 2.0E-97 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 2 202 8.0E-71 T 29-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 6 211 2.2E-65 T 29-03-2018 IPR010016 KipI family CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 SUPERFAMILY SSF50891 90 219 1.55E-48 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS03225 91ea52aa64746cee057935517f69c234 243 SUPERFAMILY SSF160467 5 93 1.44E-15 T 29-03-2018 CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 53 2.8E-21 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 PIRSF PIRSF002211 1 59 3.2E-28 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 SUPERFAMILY SSF55129 1 58 1.57E-21 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 Gene3D G3DSA:3.30.1390.20 4 58 2.3E-25 T 29-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 1.3E-27 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00705 dd9cc7e687c3d9cd3cf154079f9ada6d 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.864 T 29-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 Gene3D G3DSA:3.30.590.10 107 446 8.3E-124 T 29-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 SMART SM01230 107 356 4.0E-135 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 19 100 1.2E-31 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 Pfam PF00120 Glutamine synthetase, catalytic domain 108 442 5.5E-135 T 29-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 SUPERFAMILY SSF55931 107 443 2.35E-124 T 29-03-2018 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 Gene3D G3DSA:3.10.20.70 4 106 2.6E-37 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 SUPERFAMILY SSF54368 7 106 1.44E-34 T 29-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 ProSitePatterns PS00180 Glutamine synthetase signature 1. 54 72 - T 29-03-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 236 251 - T 29-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CFE88_RS04900 4db8dd2ee70d9edd4d1e3108d2c18624 446 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 10 443 1.5E-170 T 29-03-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 Pfam PF02073 Thermophilic metalloprotease (M29) 6 411 2.6E-158 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 366 388 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 327 348 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 392 411 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 304 324 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 248 267 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 15 32 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 158 180 9.6E-49 T 29-03-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 SUPERFAMILY SSF144052 5 412 5.75E-143 T 29-03-2018 CFE88_RS01935 2de14c0886de2fe04ac952bb45734bf4 413 Gene3D G3DSA:3.40.1830.10 5 177 7.2E-54 T 29-03-2018 IPR035097 Peptidase M29, N-terminal CFE88_RS09475 a41b31f4bdf80f64192729d2363042df 269 Gene3D G3DSA:3.20.20.80 72 265 4.7E-31 T 29-03-2018 CFE88_RS09475 a41b31f4bdf80f64192729d2363042df 269 SUPERFAMILY SSF51445 79 262 6.32E-33 T 29-03-2018 IPR017853 Glycoside hydrolase superfamily CFE88_RS09475 a41b31f4bdf80f64192729d2363042df 269 Pfam PF01183 Glycosyl hydrolases family 25 81 248 2.1E-22 T 29-03-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CFE88_RS07345 e9253c3005526209ed92de4d16a9e10a 331 Hamap MF_00973 Gluconeogenesis factor. 2 317 33.695 T 29-03-2018 IPR010119 Gluconeogenesis factor CFE88_RS07345 e9253c3005526209ed92de4d16a9e10a 331 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 6 314 3.8E-126 T 29-03-2018 IPR010119 Gluconeogenesis factor CFE88_RS07345 e9253c3005526209ed92de4d16a9e10a 331 Pfam PF01933 Uncharacterised protein family UPF0052 6 288 5.3E-103 T 29-03-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CFE88_RS07345 e9253c3005526209ed92de4d16a9e10a 331 SUPERFAMILY SSF142338 3 312 3.79E-100 T 29-03-2018 CFE88_RS07345 e9253c3005526209ed92de4d16a9e10a 331 Gene3D G3DSA:3.40.50.10680 82 321 3.2E-59 T 29-03-2018 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 78 2.2E-34 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 ProSitePatterns PS00056 Ribosomal protein S17 signature. 58 70 - T 29-03-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 Gene3D G3DSA:2.40.50.140 7 84 1.3E-30 T 29-03-2018 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 PRINTS PR00973 Ribosomal protein S17 family signature 58 68 2.3E-11 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 PRINTS PR00973 Ribosomal protein S17 family signature 68 75 2.3E-11 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 PRINTS PR00973 Ribosomal protein S17 family signature 26 49 2.3E-11 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 SUPERFAMILY SSF50249 7 83 5.14E-31 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 7 82 23.913 T 29-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 78 1.0E-34 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00660 5118f9fa6e4309288b32f49fadf82b62 87 Pfam PF00366 Ribosomal protein S17 12 79 9.1E-32 T 29-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS09710 f37bab8eab3edb37903278e58309366c 78 Pfam PF13275 S4 domain 10 62 1.3E-22 T 29-03-2018 CFE88_RS09710 f37bab8eab3edb37903278e58309366c 78 TIGRFAM TIGR02988 YaaA_near_RecF: S4 domain protein YaaA 7 62 7.6E-27 T 29-03-2018 IPR014330 RNA-binding S4-related,YaaA CFE88_RS09710 f37bab8eab3edb37903278e58309366c 78 Gene3D G3DSA:3.10.290.10 2 65 1.6E-9 T 29-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 CFE88_RS09710 f37bab8eab3edb37903278e58309366c 78 SUPERFAMILY SSF55174 9 62 9.68E-16 T 29-03-2018 CFE88_RS05140 054e0717a2f08672534b03b3987d1b5f 260 Pfam PF01148 Cytidylyltransferase family 2 257 2.0E-72 T 29-03-2018 CFE88_RS05140 054e0717a2f08672534b03b3987d1b5f 260 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 218 244 - T 29-03-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 CFE88_RS09840 e0375b0e4f4fc68d7a8396c6fd23c2cf 102 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 91 4.0E-24 T 29-03-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 CFE88_RS09840 e0375b0e4f4fc68d7a8396c6fd23c2cf 102 Pfam PF09827 CRISPR associated protein Cas2 1 80 1.0E-18 T 29-03-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 CFE88_RS09840 e0375b0e4f4fc68d7a8396c6fd23c2cf 102 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 94 14.023 T 29-03-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 CFE88_RS09840 e0375b0e4f4fc68d7a8396c6fd23c2cf 102 SUPERFAMILY SSF143430 1 83 1.57E-13 T 29-03-2018 CFE88_RS09840 e0375b0e4f4fc68d7a8396c6fd23c2cf 102 Gene3D G3DSA:3.30.70.240 1 94 3.2E-15 T 29-03-2018 CFE88_RS06855 aff33f6b36b4476333288f82e970bf27 404 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 68 388 3.2E-18 T 29-03-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT CFE88_RS06855 aff33f6b36b4476333288f82e970bf27 404 TIGRFAM TIGR04091 LTA_dltB: D-alanyl-lipoteichoic acid biosynthesis protein DltB 3 403 2.9E-152 T 29-03-2018 IPR024024 D-alanyl transfer protein DltB CFE88_RS06855 aff33f6b36b4476333288f82e970bf27 404 PIRSF PIRSF500216 1 404 8.6E-165 T 29-03-2018 IPR024024 D-alanyl transfer protein DltB CFE88_RS06855 aff33f6b36b4476333288f82e970bf27 404 PIRSF PIRSF016636 2 403 2.7E-77 T 29-03-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CFE88_RS04200 cba8ceaa5b1cc60c7260d546c081229b 376 Pfam PF05816 Toxic anion resistance protein (TelA) 44 372 8.9E-120 T 29-03-2018 IPR008863 Toxic anion resistance CFE88_RS04200 cba8ceaa5b1cc60c7260d546c081229b 376 Gene3D G3DSA:3.90.20.10 26 243 7.9E-4 T 29-03-2018 CFE88_RS04200 cba8ceaa5b1cc60c7260d546c081229b 376 PIRSF PIRSF026508 5 376 4.0E-115 T 29-03-2018 IPR008863 Toxic anion resistance CFE88_RS05900 53b53f61457e474b371cd774f6dab5bc 72 Hamap MF_01553 UPF0356 protein . 2 70 20.087 T 29-03-2018 IPR009907 Protein of unknown function DUF1447 CFE88_RS05900 53b53f61457e474b371cd774f6dab5bc 72 ProDom PD055417 UPF0356 TRANSCRIPTIONAL REGULATOR SP0122 SH1862 BLI01669/BL01628 MW0973 LMOF2365_1049 BCE33L3734 SPYM3_1619/SPS0248 3 62 5.0E-28 T 29-03-2018 IPR009907 Protein of unknown function DUF1447 CFE88_RS05900 53b53f61457e474b371cd774f6dab5bc 72 Pfam PF07288 Protein of unknown function (DUF1447) 3 69 9.0E-27 T 29-03-2018 IPR009907 Protein of unknown function DUF1447 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 32.974 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 Pfam PF00410 Ribosomal protein S8 5 132 5.5E-54 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 Gene3D G3DSA:3.30.1370.30 1 67 2.1E-26 T 29-03-2018 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 SUPERFAMILY SSF56047 3 132 3.66E-48 T 29-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00685 67c83150d033effcbcc888766b1ee655 132 Gene3D G3DSA:3.30.1490.10 76 131 5.6E-23 T 29-03-2018 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 SUPERFAMILY SSF52374 19 176 8.0E-26 T 29-03-2018 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 SUPERFAMILY SSF82114 174 312 1.59E-42 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 22 311 3.0E-87 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 Pfam PF06574 FAD synthetase 17 166 9.4E-49 T 29-03-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 Gene3D G3DSA:2.40.30.30 180 314 1.4E-39 T 29-03-2018 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 Pfam PF01687 Riboflavin kinase 184 311 1.3E-36 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 Gene3D G3DSA:3.40.50.620 1 179 1.4E-34 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 SMART SM00904 183 312 5.0E-58 T 29-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 CFE88_RS05085 7ca91054134c1d2ef0e556c96f18051c 323 PIRSF PIRSF004491 1 317 8.2E-96 T 29-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CFE88_RS12310 2e0b4c76e415cb13ac460b468897325b 213 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 176 208 5.9E-6 T 29-03-2018 CFE88_RS12310 2e0b4c76e415cb13ac460b468897325b 213 Pfam PF00746 LPXTG cell wall anchor motif 171 207 1.3E-4 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS05405 6ca62bcaa4f64dba72559fc9a7175448 135 SUPERFAMILY SSF54593 3 131 5.39E-34 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05405 6ca62bcaa4f64dba72559fc9a7175448 135 PIRSF PIRSF021700 1 134 1.1E-40 T 29-03-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase CFE88_RS05405 6ca62bcaa4f64dba72559fc9a7175448 135 Gene3D G3DSA:3.10.180.10 1 135 2.0E-23 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05405 6ca62bcaa4f64dba72559fc9a7175448 135 PIRSF PIRSF500687 1 133 1.7E-62 T 29-03-2018 IPR027259 Predicted 3-demethylubiquinone-9 3-methyltransferase, bacterial CFE88_RS05405 6ca62bcaa4f64dba72559fc9a7175448 135 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 129 1.1E-38 T 29-03-2018 IPR028973 PhnB-like CFE88_RS04100 9ad628a50cd74f95c8da24713a0e5e32 74 SUPERFAMILY SSF140652 6 72 1.19E-22 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS04100 9ad628a50cd74f95c8da24713a0e5e32 74 Gene3D G3DSA:1.10.150.260 6 70 1.1E-24 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS04100 9ad628a50cd74f95c8da24713a0e5e32 74 Pfam PF06855 YozE SAM-like fold 6 69 2.9E-23 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS04100 9ad628a50cd74f95c8da24713a0e5e32 74 Hamap MF_01538 UPF0346 protein . 3 71 20.918 T 29-03-2018 IPR010673 Protein of unknown function UPF0346 CFE88_RS04100 9ad628a50cd74f95c8da24713a0e5e32 74 PIRSF PIRSF037262 3 73 1.3E-29 T 29-03-2018 IPR010673 Protein of unknown function UPF0346 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 Gene3D G3DSA:2.30.30.240 97 165 3.4E-23 T 29-03-2018 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 Pfam PF05239 PRC-barrel domain 95 166 7.9E-12 T 29-03-2018 IPR027275 PRC-barrel domain CFE88_RS05250 38eb021aad55808e72a387421febb186 167 SUPERFAMILY SSF50447 3 86 9.89E-22 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS05250 38eb021aad55808e72a387421febb186 167 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 2 165 24.875 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 Pfam PF01782 RimM N-terminal domain 4 86 2.1E-23 T 29-03-2018 IPR002676 RimM protein GO:0006364 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 Gene3D G3DSA:2.40.30.60 2 88 1.5E-23 T 29-03-2018 IPR002676 RimM protein GO:0006364 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 3 165 9.8E-50 T 29-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CFE88_RS05250 38eb021aad55808e72a387421febb186 167 SUPERFAMILY SSF50346 97 165 3.53E-21 T 29-03-2018 IPR011033 PRC-barrel-like CFE88_RS07150 e4ed03fb043c937f5f07c924c3515a3e 213 Pfam PF07299 Elongation factor G-binding protein, N-terminal 4 87 1.5E-17 T 29-03-2018 IPR010841 Elongation factor G-binding protein, N-terminal CFE88_RS07150 e4ed03fb043c937f5f07c924c3515a3e 213 Pfam PF16571 FBP C-terminal treble-clef zinc-finger 100 199 1.9E-7 T 29-03-2018 IPR032330 Elongation factor G-binding protein, C-terminal treble-clef zinc-finger CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 215 2.4E-34 T 29-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 180 190 - T 29-03-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 254 2.9E-79 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 69 77 - T 29-03-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 Hamap MF_00258 Glutamate racemase [murI]. 3 256 38.8 T 29-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 Gene3D G3DSA:3.40.50.1860 113 267 9.6E-41 T 29-03-2018 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 SUPERFAMILY SSF53681 108 261 1.35E-36 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 Gene3D G3DSA:3.40.50.1860 1 112 9.3E-30 T 29-03-2018 CFE88_RS05610 691fdc2581477703c152d0040c88594d 267 SUPERFAMILY SSF53681 4 106 1.01E-36 T 29-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS08455 12be9580521e396cb5df32f82990ae41 168 Gene3D G3DSA:3.40.140.10 1 159 8.2E-50 T 29-03-2018 CFE88_RS08455 12be9580521e396cb5df32f82990ae41 168 SUPERFAMILY SSF53927 5 153 1.57E-53 T 29-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 CFE88_RS08455 12be9580521e396cb5df32f82990ae41 168 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 149 45.925 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CFE88_RS08455 12be9580521e396cb5df32f82990ae41 168 Pfam PF14437 MafB19-like deaminase 3 149 2.7E-42 T 29-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CFE88_RS08455 12be9580521e396cb5df32f82990ae41 168 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 29-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 Pfam PF02863 Arginine repressor, C-terminal domain 86 147 1.9E-17 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 SUPERFAMILY SSF46785 3 70 4.35E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 SUPERFAMILY SSF55252 82 149 1.31E-18 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 Gene3D G3DSA:3.30.1360.40 76 147 1.7E-18 T 29-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 PRINTS PR01467 Bacterial arginine repressor signature 120 135 6.1E-10 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 PRINTS PR01467 Bacterial arginine repressor signature 90 103 6.1E-10 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 PRINTS PR01467 Bacterial arginine repressor signature 38 53 6.1E-10 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 Pfam PF01316 Arginine repressor, DNA binding domain 1 70 3.6E-9 T 29-03-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 Hamap MF_00173 Arginine repressor [argR]. 1 153 32.277 T 29-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 94 129 2.0E-11 T 29-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CFE88_RS10865 9198d56d7e75ce9a210e76ef66bd184d 153 Gene3D G3DSA:1.10.10.10 3 67 4.9E-11 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10255 e8156d1042bee79825b7ad0cdd23a920 312 Gene3D G3DSA:3.10.520.10 3 311 2.0E-46 T 29-03-2018 CFE88_RS10255 e8156d1042bee79825b7ad0cdd23a920 312 Pfam PF02424 ApbE family 16 292 5.6E-67 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 CFE88_RS10255 e8156d1042bee79825b7ad0cdd23a920 312 SUPERFAMILY SSF143631 10 312 6.28E-80 T 29-03-2018 IPR003374 ApbE-like domain CFE88_RS10255 e8156d1042bee79825b7ad0cdd23a920 312 PIRSF PIRSF006268 2 312 7.9E-109 T 29-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 CFE88_RS03000 7cdc327c6744da54157567634b9a73fd 236 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 9 84 1.5E-14 T 29-03-2018 IPR010627 Peptidase A24A, N-terminal CFE88_RS03000 7cdc327c6744da54157567634b9a73fd 236 Pfam PF01478 Type IV leader peptidase family 100 194 1.5E-7 T 29-03-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CFE88_RS02835 d84e95adc41dee89384e24d3b2a5b505 452 PIRSF PIRSF006060 1 451 1.7E-67 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS02835 d84e95adc41dee89384e24d3b2a5b505 452 Pfam PF00324 Amino acid permease 13 447 3.9E-108 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS00765 00e43e06efc06bad96fcbe269bb98d2c 268 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 265 34.683 T 29-03-2018 IPR024919 ECF transporter transmembrane protein EcfT GO:0005215|GO:0006810|GO:0016021 CFE88_RS00765 00e43e06efc06bad96fcbe269bb98d2c 268 Pfam PF02361 Cobalt transport protein 15 234 2.9E-45 T 29-03-2018 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS12725 05bbfee52553209aa0d7aae9a674f4d7 107 SUPERFAMILY SSF103481 4 104 3.4E-19 T 29-03-2018 CFE88_RS12725 05bbfee52553209aa0d7aae9a674f4d7 107 Pfam PF00893 Small Multidrug Resistance protein 1 93 2.4E-28 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CFE88_RS08330 f462e2f05a941461784bc8d2aa7cd2c8 122 Pfam PF04241 Protein of unknown function (DUF423) 18 103 2.0E-31 T 29-03-2018 IPR006696 Protein of unknown function DUF423 CFE88_RS02320 012e7bc3a6bb60e02819811a9aab24e9 167 Gene3D G3DSA:3.30.70.100 67 161 1.0E-6 T 29-03-2018 CFE88_RS02320 012e7bc3a6bb60e02819811a9aab24e9 167 SUPERFAMILY SSF54909 69 138 2.59E-7 T 29-03-2018 IPR011008 Dimeric alpha-beta barrel CFE88_RS07820 ef644876c72ee0095427fe121933a186 290 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 281 17.3 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CFE88_RS07820 ef644876c72ee0095427fe121933a186 290 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 273 5.6E-83 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CFE88_RS07820 ef644876c72ee0095427fe121933a186 290 Pfam PF02673 Bacitracin resistance protein BacA 10 275 1.0E-77 T 29-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CFE88_RS06670 7ddb2554d92a260a942d0014808f3153 133 Hamap MF_01536 UPF0344 protein . 1 128 14.547 T 29-03-2018 IPR010899 Protein of unknown function UPF0344 CFE88_RS06670 7ddb2554d92a260a942d0014808f3153 133 ProDom PD067392 MEMBRANE UPF0344 TRANSMEMBRANE MW0851 BCE1257 SIMILAR YISL SAR0931 BCE33L1051 BT9727_1053 1 124 9.0E-57 T 29-03-2018 IPR010899 Protein of unknown function UPF0344 CFE88_RS06670 7ddb2554d92a260a942d0014808f3153 133 Pfam PF07457 Protein of unknown function (DUF1516) 2 118 5.1E-37 T 29-03-2018 IPR010899 Protein of unknown function UPF0344 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 SUPERFAMILY SSF51735 2 244 5.3E-93 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 Gene3D G3DSA:3.40.50.720 40 244 1.1E-71 T 29-03-2018 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 5 243 6.6E-109 T 29-03-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.4E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.4E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.4E-14 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 183 2.3E-5 T 29-03-2018 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 Gene3D G3DSA:3.40.50.10090 1 39 1.0E-7 T 29-03-2018 CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.9E-47 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS05290 9e72ccf9a686ab549c032bc02456c62a 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 3.9E-72 T 29-03-2018 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Pfam PF08676 MutL C terminal dimerisation domain 459 601 3.6E-46 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 125 2.9E-12 T 29-03-2018 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 SMART SM01340 208 326 6.6E-55 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 SUPERFAMILY SSF55874 3 213 1.96E-51 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Gene3D G3DSA:3.30.565.10 2 213 1.7E-34 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 SUPERFAMILY SSF118116 455 643 1.44E-53 T 29-03-2018 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Gene3D G3DSA:3.30.230.10 214 325 3.0E-30 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 29-03-2018 IPR014762 DNA mismatch repair, conserved site CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 641 27.317 T 29-03-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 SUPERFAMILY SSF54211 190 326 5.69E-37 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 306 4.5E-100 T 29-03-2018 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 SMART SM00853 459 601 3.0E-51 T 29-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CFE88_RS04960 88fc17695188711db37ba07d35813af0 645 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 209 325 1.6E-37 T 29-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 CFE88_RS09640 9c10a8705f41256c6106410205f11bfc 209 Pfam PF04893 Yip1 domain 22 199 4.6E-10 T 29-03-2018 IPR006977 Yip1 domain GO:0016020 CFE88_RS10520 f2d79581e10be2a8c06bd46483761512 567 SUPERFAMILY SSF52540 239 417 3.24E-7 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10520 f2d79581e10be2a8c06bd46483761512 567 Pfam PF09818 Predicted ATPase of the ABC class 5 447 1.1E-190 T 29-03-2018 IPR019195 ABC transporter, ATPase, putative CFE88_RS10520 f2d79581e10be2a8c06bd46483761512 567 Gene3D G3DSA:3.40.50.300 239 443 3.7E-10 T 29-03-2018 CFE88_RS08120 21abedb29efcfeee7c6568f45f379008 309 Pfam PF04657 Putative inner membrane exporter, YdcZ 163 305 7.3E-40 T 29-03-2018 IPR006750 Putative inner membrane exporter, YdcZ CFE88_RS08120 21abedb29efcfeee7c6568f45f379008 309 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 143 3.1E-35 T 29-03-2018 IPR006750 Putative inner membrane exporter, YdcZ CFE88_RS02310 ecc527cef3ef573f9baae1127010d828 407 Pfam PF05975 Bacterial ABC transporter protein EcsB 7 386 1.0E-106 T 29-03-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 CFE88_RS02310 ecc527cef3ef573f9baae1127010d828 407 PIRSF PIRSF037259 3 407 2.8E-100 T 29-03-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 CFE88_RS08390 1850bdea1678d5da6f37a63a9050d362 182 SUPERFAMILY SSF53697 7 181 2.23E-36 T 29-03-2018 CFE88_RS08390 1850bdea1678d5da6f37a63a9050d362 182 Gene3D G3DSA:3.40.50.10490 6 182 2.5E-38 T 29-03-2018 CFE88_RS08390 1850bdea1678d5da6f37a63a9050d362 182 Pfam PF01380 SIS domain 36 135 1.3E-18 T 29-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CFE88_RS08390 1850bdea1678d5da6f37a63a9050d362 182 TIGRFAM TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase 8 182 5.2E-69 T 29-03-2018 IPR017552 3-hexulose-6-phosphate isomerase GO:0016853 CFE88_RS08010 2f2f299613f8ccd853f79ccbddfc1c24 354 Gene3D G3DSA:3.90.550.10 1 302 8.0E-39 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS08010 2f2f299613f8ccd853f79ccbddfc1c24 354 Pfam PF00535 Glycosyl transferase family 2 5 166 4.4E-27 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CFE88_RS08010 2f2f299613f8ccd853f79ccbddfc1c24 354 SUPERFAMILY SSF53448 1 256 1.09E-41 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS05680 157b66591f8d348673496b86391f3014 246 SUPERFAMILY SSF75217 99 244 3.73E-37 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05680 157b66591f8d348673496b86391f3014 246 Gene3D G3DSA:3.40.1280.10 99 246 2.2E-36 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05680 157b66591f8d348673496b86391f3014 246 Gene3D G3DSA:3.30.1330.30 8 98 3.5E-18 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS05680 157b66591f8d348673496b86391f3014 246 SUPERFAMILY SSF55315 3 98 1.88E-21 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS05680 157b66591f8d348673496b86391f3014 246 SMART SM00967 31 100 1.5E-11 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CFE88_RS05680 157b66591f8d348673496b86391f3014 246 Pfam PF00588 SpoU rRNA Methylase family 107 242 3.1E-34 T 29-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CFE88_RS05680 157b66591f8d348673496b86391f3014 246 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 31 99 1.2E-9 T 29-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 631 55.347 T 29-03-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Pfam PF01131 DNA topoisomerase 128 545 1.8E-134 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 SMART SM00493 3 103 8.0E-32 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 574 610 5.4E-16 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 615 653 6.8E-15 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 655 688 0.14 T 29-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 SUPERFAMILY SSF56712 4 587 4.45E-199 T 29-03-2018 IPR023405 DNA topoisomerase, type IA, core domain CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:3.40.50.140 2 129 3.8E-38 T 29-03-2018 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 302 - T 29-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 609 9.1E-258 T 29-03-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 SMART SM00436 104 192 2.3E-50 T 29-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:3.30.65.10 555 610 4.5E-17 T 29-03-2018 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:3.30.65.10 611 653 5.2E-11 T 29-03-2018 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 9.0E-36 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 368 384 9.0E-36 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 471 485 9.0E-36 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 9.0E-36 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 9.0E-36 T 29-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Pfam PF01751 Toprim domain 5 113 8.6E-30 T 29-03-2018 IPR006171 TOPRIM domain CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 SMART SM00437 242 508 3.6E-119 T 29-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:1.10.460.10 135 325 3.8E-48 T 29-03-2018 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:2.70.20.10 326 454 2.6E-39 T 29-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CFE88_RS05195 f9113794ded704e3a687540d09eed570 689 Gene3D G3DSA:2.20.25.10 656 689 1.2E-4 T 29-03-2018 CFE88_RS07500 35ba2d53bfdec55d906a8b212a1d225d 104 PIRSF PIRSF017292 1 104 3.0E-44 T 29-03-2018 IPR016694 Protein of unknown function UCP017292, zinc finger, CHY-type CFE88_RS07500 35ba2d53bfdec55d906a8b212a1d225d 104 SUPERFAMILY SSF161219 5 90 8.5E-20 T 29-03-2018 CFE88_RS07500 35ba2d53bfdec55d906a8b212a1d225d 104 Pfam PF05495 CHY zinc finger 15 88 1.3E-12 T 29-03-2018 IPR008913 Zinc finger, CHY-type GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 CFE88_RS07440 173a6b8d4fbfcdad5dbac994abf47596 288 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 280 1.7E-95 T 29-03-2018 IPR003797 DegV CFE88_RS07440 173a6b8d4fbfcdad5dbac994abf47596 288 SUPERFAMILY SSF82549 1 283 3.4E-87 T 29-03-2018 CFE88_RS07440 173a6b8d4fbfcdad5dbac994abf47596 288 Gene3D G3DSA:3.30.1180.10 156 287 2.2E-34 T 29-03-2018 CFE88_RS07440 173a6b8d4fbfcdad5dbac994abf47596 288 Gene3D G3DSA:3.40.50.10170 1 155 2.9E-46 T 29-03-2018 CFE88_RS07440 173a6b8d4fbfcdad5dbac994abf47596 288 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 282 8.1E-84 T 29-03-2018 IPR003797 DegV CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 SUPERFAMILY SSF50156 278 395 4.6E-15 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 Gene3D G3DSA:2.30.42.10 302 408 3.8E-19 T 29-03-2018 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 155 175 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 134 146 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 196 220 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 342 354 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 237 254 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 PRINTS PR00834 HtrA/DegQ protease family signature 259 276 6.9E-36 T 29-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 Gene3D G3DSA:2.40.10.10 192 298 5.4E-34 T 29-03-2018 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 Pfam PF13365 Trypsin-like peptidase domain 122 266 1.9E-30 T 29-03-2018 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 SMART SM00228 304 385 5.1E-4 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 Pfam PF13180 PDZ domain 304 394 1.3E-16 T 29-03-2018 IPR001478 PDZ domain GO:0005515 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 Gene3D G3DSA:2.40.10.10 77 191 2.3E-29 T 29-03-2018 CFE88_RS02680 6b4447891f7f751c7ef7aff3c6d34907 412 SUPERFAMILY SSF50494 80 300 2.25E-55 T 29-03-2018 IPR009003 Peptidase S1, PA clan CFE88_RS09000 28d9a33af06f83b3cc71d17e37ae5040 176 Pfam PF00583 Acetyltransferase (GNAT) family 31 124 5.2E-10 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS09000 28d9a33af06f83b3cc71d17e37ae5040 176 Gene3D G3DSA:3.40.630.30 1 140 3.8E-11 T 29-03-2018 CFE88_RS09000 28d9a33af06f83b3cc71d17e37ae5040 176 SUPERFAMILY SSF55729 29 141 8.78E-15 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS03500 4d14143472be9e80b17c0c64884c1186 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 29-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03500 4d14143472be9e80b17c0c64884c1186 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 8.2E-21 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03500 4d14143472be9e80b17c0c64884c1186 49 SUPERFAMILY SSF57829 1 49 1.39E-19 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CFE88_RS03500 4d14143472be9e80b17c0c64884c1186 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 19.708 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS03500 4d14143472be9e80b17c0c64884c1186 49 Pfam PF00471 Ribosomal protein L33 3 49 7.3E-23 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09915 67c4bff4093238cc736486d79531ce5d 145 Pfam PF07252 Protein of unknown function (DUF1433) 36 124 2.7E-21 T 29-03-2018 IPR009881 Protein of unknown function DUF1433 CFE88_RS09915 67c4bff4093238cc736486d79531ce5d 145 Gene3D G3DSA:3.10.450.130 35 132 1.3E-17 T 29-03-2018 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Gene3D G3DSA:1.10.3710.10 337 426 9.4E-26 T 29-03-2018 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 SMART SM00382 42 154 1.9E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 SUPERFAMILY SSF48019 242 424 5.55E-68 T 29-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Gene3D G3DSA:3.40.50.300 1 142 8.3E-27 T 29-03-2018 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Gene3D G3DSA:1.10.8.60 143 232 1.1E-19 T 29-03-2018 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Pfam PF16193 AAA C-terminal domain 181 256 9.4E-24 T 29-03-2018 IPR032423 AAA C-terminal domain CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Gene3D G3DSA:1.20.272.10 241 334 7.6E-36 T 29-03-2018 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 SUPERFAMILY SSF52540 7 223 5.08E-40 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 46 148 1.5E-16 T 29-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CFE88_RS03140 856a8fb7720febdc6f7bd2e957e0e8cf 426 Pfam PF12002 MgsA AAA+ ATPase C terminal 257 422 9.5E-62 T 29-03-2018 IPR021886 MgsA AAA+ ATPase C-terminal CFE88_RS11315 5862a694b2438efb144fd9a4c2b7a71f 499 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 8 489 7.5E-191 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS11315 5862a694b2438efb144fd9a4c2b7a71f 499 Gene3D G3DSA:3.50.50.60 3 447 3.8E-15 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11315 5862a694b2438efb144fd9a4c2b7a71f 499 SUPERFAMILY SSF51905 3 274 1.32E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS11315 5862a694b2438efb144fd9a4c2b7a71f 499 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 6 492 2.7E-219 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS11315 5862a694b2438efb144fd9a4c2b7a71f 499 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 3 492 51.874 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS02930 50ac940084adbd7392b29afaad548ad7 307 Gene3D G3DSA:1.25.40.10 13 280 4.4E-5 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS04955 7036ac41af3dc3683950c1300b9d2d9e 177 Gene3D G3DSA:3.20.20.400 1 177 4.9E-65 T 29-03-2018 CFE88_RS04955 7036ac41af3dc3683950c1300b9d2d9e 177 SUPERFAMILY SSF110391 5 177 4.97E-56 T 29-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 CFE88_RS04955 7036ac41af3dc3683950c1300b9d2d9e 177 PIRSF PIRSF016897 1 177 2.0E-64 T 29-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 CFE88_RS04955 7036ac41af3dc3683950c1300b9d2d9e 177 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 5 177 5.2E-60 T 29-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 CFE88_RS12070 b27479e787455003c75a07734e98ec5c 458 PIRSF PIRSF006060 1 457 1.1E-67 T 29-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 CFE88_RS12070 b27479e787455003c75a07734e98ec5c 458 Pfam PF00324 Amino acid permease 13 448 4.6E-101 T 29-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.5E-18 T 29-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Gene3D G3DSA:2.40.30.10 300 393 3.5E-33 T 29-03-2018 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 SUPERFAMILY SSF52540 6 219 3.06E-61 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Gene3D G3DSA:3.40.50.300 75 192 7.9E-31 T 29-03-2018 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 SUPERFAMILY SSF50465 302 394 1.15E-36 T 29-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Gene3D G3DSA:2.40.30.10 193 298 2.8E-32 T 29-03-2018 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.3E-60 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.8E-25 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 5.8E-25 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 5.8E-25 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 5.8E-25 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 5.8E-25 T 29-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.5E-34 T 29-03-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.853 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 29-03-2018 IPR031157 Tr-type G domain, conserved site CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 146 3.2E-14 T 29-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 2.3E-233 T 29-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 SUPERFAMILY SSF50447 203 301 1.24E-31 T 29-03-2018 IPR009000 Translation protein, beta-barrel domain CFE88_RS08530 ec5217f95b2ca1a41f700ccc7dc578ea 394 Gene3D G3DSA:3.40.50.300 1 74 1.3E-11 T 29-03-2018 CFE88_RS12075 b8b63e1efb2094d7dfc2e7c50d6f416b 269 SUPERFAMILY SSF56300 1 248 5.38E-31 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS12075 b8b63e1efb2094d7dfc2e7c50d6f416b 269 TIGRFAM TIGR03729 acc_ester: putative phosphoesterase 2 247 6.4E-84 T 29-03-2018 IPR022302 Phosphoesterase, putative CFE88_RS12075 b8b63e1efb2094d7dfc2e7c50d6f416b 269 Gene3D G3DSA:3.60.21.10 1 261 1.5E-23 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS12075 b8b63e1efb2094d7dfc2e7c50d6f416b 269 Pfam PF00149 Calcineurin-like phosphoesterase 1 228 1.1E-12 T 29-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 SUPERFAMILY SSF51690 139 478 4.37E-129 T 29-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 155 338 8.5E-10 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 11 465 2.1E-178 T 29-03-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 SUPERFAMILY SSF54675 4 138 5.3E-47 T 29-03-2018 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 PIRSF PIRSF000484 2 480 2.4E-149 T 29-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CFE88_RS01770 10faf84d29f9f58408606fb0436ff340 489 Gene3D G3DSA:3.20.140.10 5 387 4.1E-124 T 29-03-2018 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 PRINTS PR01607 Apyrase family signature 232 255 1.2E-6 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 PRINTS PR01607 Apyrase family signature 199 216 1.2E-6 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 PRINTS PR01607 Apyrase family signature 378 401 1.2E-6 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 PRINTS PR01607 Apyrase family signature 22 40 1.2E-6 T 29-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 Pfam PF02872 5'-nucleotidase, C-terminal domain 341 472 2.1E-12 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 Gene3D G3DSA:3.90.780.10 332 515 3.6E-19 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 29-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 SUPERFAMILY SSF56300 24 321 5.4E-58 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 SUPERFAMILY SSF55816 340 515 1.44E-19 T 29-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CFE88_RS06245 4c7017ec866d1bf7024c152c0fe4f60e 516 Gene3D G3DSA:3.60.21.10 18 322 4.6E-48 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 Gene3D G3DSA:3.75.10.10 5 409 1.3E-99 T 29-03-2018 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 390 408 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 347 364 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 152 170 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 180 195 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 4 24 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PRINTS PR01466 Bacterial arginine deiminase signature 367 381 1.6E-54 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 Hamap MF_00242 Arginine deiminase [arcA]. 3 411 46.764 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 TIGRFAM TIGR01078 arcA: arginine deiminase 6 410 4.3E-162 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 SUPERFAMILY SSF55909 4 411 6.42E-137 T 29-03-2018 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 PIRSF PIRSF006356 1 411 9.3E-172 T 29-03-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CFE88_RS10870 a713fc2c59e82e81a81e65f17ed76e74 411 Pfam PF02274 Amidinotransferase 20 408 2.0E-114 T 29-03-2018 CFE88_RS03250 f9a432a2fa99fda2de9046648d5340ac 414 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 176 182 - T 29-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CFE88_RS03250 f9a432a2fa99fda2de9046648d5340ac 414 Pfam PF01566 Natural resistance-associated macrophage protein 52 381 2.0E-26 T 29-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 Pfam PF00361 Proton-conducting membrane transporter 130 419 3.4E-51 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 6.9E-13 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 6.9E-13 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 6.9E-13 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 6.9E-13 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS06775 ddc29f6e41d15f37d172c3e23d988205 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 6.9E-13 T 29-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS04310 0f666530d8d8cc4c0c34ab1645fbb298 603 Pfam PF01432 Peptidase family M3 204 582 1.5E-35 T 29-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CFE88_RS04310 0f666530d8d8cc4c0c34ab1645fbb298 603 SUPERFAMILY SSF55486 55 596 7.45E-99 T 29-03-2018 CFE88_RS04310 0f666530d8d8cc4c0c34ab1645fbb298 603 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 8 593 1.1E-194 T 29-03-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 CFE88_RS04310 0f666530d8d8cc4c0c34ab1645fbb298 603 Gene3D G3DSA:1.10.1370.10 77 581 2.9E-31 T 29-03-2018 CFE88_RS04310 0f666530d8d8cc4c0c34ab1645fbb298 603 Pfam PF08439 Oligopeptidase F 115 180 5.9E-12 T 29-03-2018 IPR013647 Oligopeptidase F, N-terminal domain CFE88_RS10330 93d1cf648772390ee25b8da304ecdb31 292 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 3 40 1.7E-5 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS10330 93d1cf648772390ee25b8da304ecdb31 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 274 1.0E-27 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10330 93d1cf648772390ee25b8da304ecdb31 292 SUPERFAMILY SSF161098 68 258 8.63E-25 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10330 93d1cf648772390ee25b8da304ecdb31 292 Gene3D G3DSA:1.10.3720.10 2 263 5.0E-39 T 29-03-2018 CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 400 431 - T 29-03-2018 IPR030390 RNA methyltransferase TrmA, active site CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 Gene3D G3DSA:3.40.50.150 92 467 3.4E-62 T 29-03-2018 CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 SUPERFAMILY SSF53335 84 468 1.41E-84 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 33 461 8.5E-154 T 29-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 Gene3D G3DSA:2.40.50.140 13 91 5.1E-22 T 29-03-2018 CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 451 461 - T 29-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 106 467 1.4E-20 T 29-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CFE88_RS01845 9fe5872f3a038edf33458ad0123967d5 472 SUPERFAMILY SSF50249 18 76 1.2E-12 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS00240 c24e9ad2b7833a322cb6ce08f43dbe3b 170 Gene3D G3DSA:3.30.530.20 11 170 9.9E-17 T 29-03-2018 IPR023393 START-like domain CFE88_RS00240 c24e9ad2b7833a322cb6ce08f43dbe3b 170 SUPERFAMILY SSF55961 6 162 7.53E-35 T 29-03-2018 CFE88_RS00240 c24e9ad2b7833a322cb6ce08f43dbe3b 170 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 21 161 1.8E-26 T 29-03-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 Gene3D G3DSA:3.40.50.1580 12 235 7.7E-53 T 29-03-2018 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 4 236 41.117 T 29-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 SUPERFAMILY SSF53167 5 235 2.23E-87 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 29-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 Pfam PF01048 Phosphorylase superfamily 18 226 3.0E-36 T 29-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CFE88_RS01080 64e625f2d464da70b9d088bf4a303816 236 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 7 235 5.7E-94 T 29-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 Pfam PF00367 phosphotransferase system, EIIB 8 41 9.8E-15 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 SUPERFAMILY SSF55604 6 81 1.83E-20 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 9.5E-19 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 Gene3D G3DSA:3.30.1360.60 4 81 3.5E-26 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 Pfam PF02378 Phosphotransferase system, EIIC 110 411 4.9E-62 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS12290 12fa01f5de412bb551f89c0a19f7cd1b 481 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 3 468 8.3E-202 T 29-03-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 81 100 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 44 68 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 213 233 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 136 154 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 2 21 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 PRINTS PR00783 Major intrinsic protein family signature 166 188 3.2E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 ProSitePatterns PS00221 MIP family signature. 62 70 - T 29-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 Pfam PF00230 Major intrinsic protein 2 230 1.3E-45 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 230 5.8E-59 T 29-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 SUPERFAMILY SSF81338 2 235 5.63E-72 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CFE88_RS04950 6f32d4c08b05795cda34bc4329319830 274 Gene3D G3DSA:1.20.1080.10 1 241 1.4E-83 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CFE88_RS01430 0a1674538a7da0a6aae77ee909cc4b2f 151 Pfam PF10263 SprT-like family 8 97 2.4E-12 T 29-03-2018 IPR006640 SprT-like CFE88_RS01430 0a1674538a7da0a6aae77ee909cc4b2f 151 Pfam PF17283 SprT-like zinc ribbon domain 112 146 1.2E-6 T 29-03-2018 IPR035240 SprT-like, zinc ribbon domain CFE88_RS01430 0a1674538a7da0a6aae77ee909cc4b2f 151 SMART SM00731 4 147 5.0E-47 T 29-03-2018 IPR006640 SprT-like CFE88_RS01430 0a1674538a7da0a6aae77ee909cc4b2f 151 Hamap MF_00745 Protein SprT-like. 4 147 37.923 T 29-03-2018 IPR023524 Uncharacterised protein family SprT-like CFE88_RS04775 7c4c5ddf4b88e11e180bb370726f541d 167 SMART SM00635 75 154 1.2E-6 T 29-03-2018 IPR003343 Bacterial Ig-like, group 2 CFE88_RS04775 7c4c5ddf4b88e11e180bb370726f541d 167 Pfam PF02368 Bacterial Ig-like domain (group 2) 89 146 4.7E-12 T 29-03-2018 IPR003343 Bacterial Ig-like, group 2 CFE88_RS04775 7c4c5ddf4b88e11e180bb370726f541d 167 SUPERFAMILY SSF49373 78 158 1.88E-14 T 29-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments CFE88_RS04775 7c4c5ddf4b88e11e180bb370726f541d 167 Gene3D G3DSA:2.60.40.1080 71 159 5.4E-17 T 29-03-2018 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 4 174 8.7E-42 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 1 177 16.816 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 29-03-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 Gene3D G3DSA:1.10.520.20 1 105 1.8E-22 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 4 174 5.3E-37 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 PRINTS PR00125 ATP synthase delta subunit signature 4 23 3.0E-22 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 PRINTS PR00125 ATP synthase delta subunit signature 150 168 3.0E-22 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 PRINTS PR00125 ATP synthase delta subunit signature 135 150 3.0E-22 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 PRINTS PR00125 ATP synthase delta subunit signature 73 84 3.0E-22 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 PRINTS PR00125 ATP synthase delta subunit signature 84 98 3.0E-22 T 29-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS01245 eb24643551e1cd3f4e071024595d1d3e 179 SUPERFAMILY SSF47928 2 103 2.62E-23 T 29-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS02440 4596dd5f700eea1d2703d9c5be0795d4 302 Gene3D G3DSA:1.20.120.350 2 278 0.001 T 29-03-2018 CFE88_RS04825 5529a2b264699ec4fe1c407e0f81f29b 178 Pfam PF08761 dUTPase 9 168 2.1E-16 T 29-03-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 CFE88_RS04825 5529a2b264699ec4fe1c407e0f81f29b 178 SUPERFAMILY SSF101386 8 168 2.01E-27 T 29-03-2018 CFE88_RS04825 5529a2b264699ec4fe1c407e0f81f29b 178 PIRSF PIRSF032436 1 178 2.1E-70 T 29-03-2018 IPR016995 Uncharacterised phage-associated protein UCP032436 CFE88_RS04825 5529a2b264699ec4fe1c407e0f81f29b 178 Gene3D G3DSA:1.10.4010.10 4 175 1.4E-25 T 29-03-2018 CFE88_RS11510 8f0b659bbc26191aaef659694a052cba 75 SMART SM00899 2 75 4.9E-12 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CFE88_RS11510 8f0b659bbc26191aaef659694a052cba 75 Pfam PF04023 FeoA domain 10 72 1.4E-10 T 29-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CFE88_RS11510 8f0b659bbc26191aaef659694a052cba 75 SUPERFAMILY SSF50037 9 74 1.58E-12 T 29-03-2018 IPR008988 Transcriptional repressor, C-terminal CFE88_RS11510 8f0b659bbc26191aaef659694a052cba 75 Gene3D G3DSA:2.30.30.90 8 75 8.3E-11 T 29-03-2018 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 631 5.9E-190 T 29-03-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 Gene3D G3DSA:3.40.50.300 5 330 4.6E-28 T 29-03-2018 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 Pfam PF07664 Ferrous iron transport protein B C terminus 454 506 7.3E-19 T 29-03-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 Pfam PF07670 Nucleoside recognition 511 635 7.2E-30 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 Pfam PF07670 Nucleoside recognition 350 444 2.0E-14 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 SUPERFAMILY SSF52540 6 169 2.42E-28 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 51 66 6.9E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.9E-5 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS11515 06861b28debbb9b664bbce7a4ab5dec4 664 Pfam PF02421 Ferrous iron transport protein B 6 153 2.7E-57 T 29-03-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CFE88_RS08050 f1afafecdfd53a75feeb7d3f082a2b71 278 Gene3D G3DSA:1.10.3470.10 3 275 7.8E-33 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS08050 f1afafecdfd53a75feeb7d3f082a2b71 278 Pfam PF00950 ABC 3 transport family 10 263 1.9E-76 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CFE88_RS08050 f1afafecdfd53a75feeb7d3f082a2b71 278 SUPERFAMILY SSF81345 3 262 1.2E-43 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS08520 52ebce22e618a5b3d0fdaaf5328d226c 169 Gene3D G3DSA:3.40.630.30 3 166 6.0E-15 T 29-03-2018 CFE88_RS08520 52ebce22e618a5b3d0fdaaf5328d226c 169 SUPERFAMILY SSF55729 4 158 7.55E-22 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08520 52ebce22e618a5b3d0fdaaf5328d226c 169 Pfam PF13302 Acetyltransferase (GNAT) domain 4 145 6.8E-14 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS12225 8da7284ce995bd368bd82074ff81e0b8 225 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 223 8.2E-72 T 29-03-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 CFE88_RS12225 8da7284ce995bd368bd82074ff81e0b8 225 Gene3D G3DSA:1.20.950.20 1 215 3.8E-44 T 29-03-2018 CFE88_RS12225 8da7284ce995bd368bd82074ff81e0b8 225 SUPERFAMILY SSF103501 1 222 8.5E-72 T 29-03-2018 IPR023234 NarG-like domain CFE88_RS12225 8da7284ce995bd368bd82074ff81e0b8 225 Pfam PF02665 Nitrate reductase gamma subunit 3 222 1.6E-88 T 29-03-2018 IPR023234 NarG-like domain CFE88_RS10765 f1bbf392f3d42350853308c8c73cd8ca 159 Gene3D G3DSA:3.30.1060.10 1 157 2.4E-41 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS10765 f1bbf392f3d42350853308c8c73cd8ca 159 Pfam PF01625 Peptide methionine sulfoxide reductase 3 144 1.9E-40 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS10765 f1bbf392f3d42350853308c8c73cd8ca 159 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 151 24.473 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS10765 f1bbf392f3d42350853308c8c73cd8ca 159 SUPERFAMILY SSF55068 1 154 6.02E-46 T 29-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CFE88_RS09585 42f3dfd197627301ff40346f9abb22b8 461 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CFE88_RS09585 42f3dfd197627301ff40346f9abb22b8 461 SUPERFAMILY SSF103473 24 458 1.22E-65 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS09585 42f3dfd197627301ff40346f9abb22b8 461 Pfam PF00083 Sugar (and other) transporter 34 459 9.4E-39 T 29-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CFE88_RS09585 42f3dfd197627301ff40346f9abb22b8 461 Gene3D G3DSA:1.20.1250.20 247 459 7.0E-27 T 29-03-2018 CFE88_RS09585 42f3dfd197627301ff40346f9abb22b8 461 Gene3D G3DSA:1.20.1250.20 11 240 2.3E-29 T 29-03-2018 CFE88_RS04460 32fcda18c40423df83d7ac09f4268e44 202 SMART SM01207 8 192 2.8E-77 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CFE88_RS04460 32fcda18c40423df83d7ac09f4268e44 202 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 201 2.4E-56 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CFE88_RS04460 32fcda18c40423df83d7ac09f4268e44 202 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 5 200 20.534 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CFE88_RS04460 32fcda18c40423df83d7ac09f4268e44 202 Pfam PF02660 Glycerol-3-phosphate acyltransferase 9 191 9.6E-51 T 29-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CFE88_RS01560 c45865873b6498f8f5cac24babda504e 416 Pfam PF00909 Ammonium Transporter Family 8 402 1.6E-107 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CFE88_RS01560 c45865873b6498f8f5cac24babda504e 416 SUPERFAMILY SSF111352 2 381 1.31E-112 T 29-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CFE88_RS01560 c45865873b6498f8f5cac24babda504e 416 Gene3D G3DSA:1.10.3430.10 1 382 1.9E-117 T 29-03-2018 CFE88_RS01560 c45865873b6498f8f5cac24babda504e 416 TIGRFAM TIGR00836 amt: ammonium transporter 5 402 6.8E-120 T 29-03-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 CFE88_RS05820 704a28787dc2e872d280f2066894c09a 178 Pfam PF13273 Protein of unknown function (DUF4064) 2 105 1.5E-20 T 29-03-2018 IPR025273 Domain of unknown function DUF4064 CFE88_RS05820 704a28787dc2e872d280f2066894c09a 178 SUPERFAMILY SSF161098 3 119 4.09E-5 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS05820 704a28787dc2e872d280f2066894c09a 178 Gene3D G3DSA:1.10.3720.10 1 129 1.6E-5 T 29-03-2018 CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 Gene3D G3DSA:3.40.50.2300 1 122 4.6E-34 T 29-03-2018 CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 SMART SM00862 145 220 2.5E-22 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 Gene3D G3DSA:1.10.10.10 123 224 6.0E-28 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 2.9E-25 T 29-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 SUPERFAMILY SSF52172 1 173 3.11E-39 T 29-03-2018 IPR011006 CheY-like superfamily CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 SMART SM00448 2 112 4.3E-34 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS00065 1f520cc4b746757d39fa30b70a4a4c06 224 Pfam PF00072 Response regulator receiver domain 5 112 8.7E-27 T 29-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 200 1.7E-75 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 Gene3D G3DSA:3.20.20.70 1 214 2.9E-77 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 4 212 9.5E-82 T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 PIRSF PIRSF001461 1 214 5.9E-83 T 29-03-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 29-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CFE88_RS05335 42900498e4414762c86226e45bc5960a 214 SUPERFAMILY SSF51366 1 213 1.53E-68 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS08475 6139cb0971f2a2bff5549ca7a70af18f 434 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 427 1.5E-139 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 CFE88_RS08475 6139cb0971f2a2bff5549ca7a70af18f 434 PIRSF PIRSF000337 2 434 7.9E-125 T 29-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 CFE88_RS08475 6139cb0971f2a2bff5549ca7a70af18f 434 SUPERFAMILY SSF51679 7 433 2.59E-101 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS08475 6139cb0971f2a2bff5549ca7a70af18f 434 Gene3D G3DSA:3.20.20.30 1 434 1.6E-80 T 29-03-2018 CFE88_RS08475 6139cb0971f2a2bff5549ca7a70af18f 434 Pfam PF00296 Luciferase-like monooxygenase 20 385 2.6E-47 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS06650 d3c53492239166a53874fefe7ccb0352 607 SUPERFAMILY SSF52266 452 604 5.66E-17 T 29-03-2018 IPR013830 SGNH hydrolase-type esterase domain CFE88_RS06650 d3c53492239166a53874fefe7ccb0352 607 Gene3D G3DSA:3.40.50.1110 430 607 4.1E-16 T 29-03-2018 CFE88_RS06650 d3c53492239166a53874fefe7ccb0352 607 Pfam PF01757 Acyltransferase family 19 350 4.0E-29 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 CFE88_RS03265 7bd72a942e8567383fb011be33c7f708 366 Gene3D G3DSA:3.40.50.300 56 224 4.3E-35 T 29-03-2018 CFE88_RS03265 7bd72a942e8567383fb011be33c7f708 366 SUPERFAMILY SSF52540 70 280 1.67E-32 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03265 7bd72a942e8567383fb011be33c7f708 366 TIGRFAM TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH 6 365 6.7E-152 T 29-03-2018 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH CFE88_RS03265 7bd72a942e8567383fb011be33c7f708 366 Pfam PF01926 50S ribosome-binding GTPase 162 230 3.2E-14 T 29-03-2018 IPR006073 GTP binding domain GO:0005525 CFE88_RS10265 05b8efca588a434d14472a6263857267 458 Pfam PF07690 Major Facilitator Superfamily 16 408 6.9E-45 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS10265 05b8efca588a434d14472a6263857267 458 Gene3D G3DSA:1.20.1250.20 4 200 1.5E-29 T 29-03-2018 CFE88_RS10265 05b8efca588a434d14472a6263857267 458 SUPERFAMILY SSF103473 1 199 5.93E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10265 05b8efca588a434d14472a6263857267 458 SUPERFAMILY SSF103473 247 454 5.93E-58 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10265 05b8efca588a434d14472a6263857267 458 Gene3D G3DSA:1.20.1250.20 257 457 2.0E-24 T 29-03-2018 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 SUPERFAMILY SSF51905 195 298 2.75E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 SUPERFAMILY SSF51905 352 470 2.75E-5 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 SUPERFAMILY SSF51905 1 238 8.03E-13 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 Gene3D G3DSA:3.50.50.60 188 491 6.3E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 Pfam PF13454 FAD-NAD(P)-binding 7 161 2.7E-29 T 29-03-2018 CFE88_RS02500 2c01e508167c8d69a6df2366d1695811 497 Gene3D G3DSA:3.50.50.60 2 186 5.5E-7 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS05730 d70df7c20a5ecd52e4e84691d79e7805 83 Pfam PF09902 Uncharacterized protein conserved in bacteria (DUF2129) 6 75 8.5E-24 T 29-03-2018 IPR016979 Protein of unknown function DUF2129 CFE88_RS05730 d70df7c20a5ecd52e4e84691d79e7805 83 PIRSF PIRSF031653 1 83 6.2E-27 T 29-03-2018 IPR016979 Protein of unknown function DUF2129 CFE88_RS05730 d70df7c20a5ecd52e4e84691d79e7805 83 Hamap MF_01126 UPF0298 protein . 2 79 19.672 T 29-03-2018 IPR016979 Protein of unknown function DUF2129 CFE88_RS08005 0ca5b8b957e406dc0b0ce9648680a28e 132 Gene3D G3DSA:3.40.50.620 1 128 3.0E-30 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS08005 0ca5b8b957e406dc0b0ce9648680a28e 132 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 67 3.3E-22 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CFE88_RS08005 0ca5b8b957e406dc0b0ce9648680a28e 132 Pfam PF01467 Cytidylyltransferase-like 5 124 1.9E-22 T 29-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CFE88_RS08005 0ca5b8b957e406dc0b0ce9648680a28e 132 SUPERFAMILY SSF52374 1 125 1.18E-34 T 29-03-2018 CFE88_RS08005 0ca5b8b957e406dc0b0ce9648680a28e 132 TIGRFAM TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase 4 126 7.7E-61 T 29-03-2018 IPR006409 Glycerol-3-phosphate cytidylyltransferase GO:0005737|GO:0019350|GO:0046872|GO:0047348 CFE88_RS09440 7b92550ac5a24b8c29e53968d48213a2 196 Pfam PF01965 DJ-1/PfpI family 2 163 3.2E-27 T 29-03-2018 IPR002818 DJ-1/PfpI CFE88_RS09440 7b92550ac5a24b8c29e53968d48213a2 196 Gene3D G3DSA:3.40.50.880 1 184 3.2E-23 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09440 7b92550ac5a24b8c29e53968d48213a2 196 SUPERFAMILY SSF52317 2 165 2.38E-27 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS07545 5315bd26c1168d36edd8d38149b2e7b1 291 SUPERFAMILY SSF103481 43 142 2.22E-10 T 29-03-2018 CFE88_RS07545 5315bd26c1168d36edd8d38149b2e7b1 291 Pfam PF00892 EamA-like transporter family 8 139 2.3E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CFE88_RS07545 5315bd26c1168d36edd8d38149b2e7b1 291 Pfam PF00892 EamA-like transporter family 150 277 1.7E-11 T 29-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CFE88_RS07545 5315bd26c1168d36edd8d38149b2e7b1 291 SUPERFAMILY SSF103481 182 278 3.79E-14 T 29-03-2018 CFE88_RS05600 e57595e4c3ad5d9aea37a57585d0cba8 169 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 4 141 2.7E-21 T 29-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CFE88_RS05600 e57595e4c3ad5d9aea37a57585d0cba8 169 Gene3D G3DSA:3.60.21.10 3 169 6.9E-16 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05600 e57595e4c3ad5d9aea37a57585d0cba8 169 SUPERFAMILY SSF56300 1 167 4.2E-37 T 29-03-2018 IPR029052 Metallo-dependent phosphatase-like CFE88_RS05600 e57595e4c3ad5d9aea37a57585d0cba8 169 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 5 147 1.0E-21 T 29-03-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 CFE88_RS06135 c7aa56e4d60f55a25a56e6da1e7e9ae4 453 Pfam PF00425 chorismate binding enzyme 187 437 7.4E-64 T 29-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CFE88_RS06135 c7aa56e4d60f55a25a56e6da1e7e9ae4 453 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 103 445 2.3E-113 T 29-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 CFE88_RS06135 c7aa56e4d60f55a25a56e6da1e7e9ae4 453 Gene3D G3DSA:3.60.120.10 3 448 9.6E-88 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS06135 c7aa56e4d60f55a25a56e6da1e7e9ae4 453 SUPERFAMILY SSF56322 35 448 6.41E-91 T 29-03-2018 IPR005801 ADC synthase GO:0009058 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 22 90 2.5E-25 T 29-03-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 Pfam PF01409 tRNA synthetases class II core domain (F) 95 343 2.3E-108 T 29-03-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 11 343 48.546 T 29-03-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 SUPERFAMILY SSF46589 15 102 2.98E-22 T 29-03-2018 IPR010978 tRNA-binding arm GO:0000166 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 SUPERFAMILY SSF55681 95 344 1.96E-79 T 29-03-2018 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 Gene3D G3DSA:3.30.930.10 10 347 3.6E-95 T 29-03-2018 CFE88_RS05675 dbc724712317588aa4bcc2cb179827bd 352 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 42 344 1.5E-113 T 29-03-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 Gene3D G3DSA:3.90.1280.10 236 289 1.1E-21 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 Pfam PF01430 Hsp33 protein 4 280 2.1E-86 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 Hamap MF_00117 33 kDa chaperonin [hslO]. 3 292 39.411 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 Gene3D G3DSA:3.55.30.10 3 235 4.0E-74 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 SUPERFAMILY SSF118352 234 291 3.53E-19 T 29-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 SUPERFAMILY SSF64397 3 241 7.06E-74 T 29-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CFE88_RS08805 eb6cca4cc29e8e0d9866bffada40da69 293 PIRSF PIRSF005261 1 293 5.8E-73 T 29-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 Gene3D G3DSA:1.10.1270.20 168 245 3.3E-35 T 29-03-2018 CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 219 2.3E-72 T 29-03-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 245 114.469 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 Gene3D G3DSA:3.40.1280.10 1 167 6.0E-80 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 231 1.4E-102 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 SUPERFAMILY SSF75217 1 242 7.85E-106 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS05245 abd825e11e95b4dfe00d20516602260d 245 PIRSF PIRSF000386 1 245 5.8E-108 T 29-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CFE88_RS11105 f10284288e233d619fbb3044798a5685 33 Pfam PF10855 Protein of unknown function (DUF2648) 1 33 6.8E-27 T 29-03-2018 IPR022561 Protein of unknown function DUF2648 CFE88_RS11105 f10284288e233d619fbb3044798a5685 33 ProDom PD610536 SE2200 SAV2627.1 SA2420.1 MW2548 1 33 6.0E-12 T 29-03-2018 IPR022561 Protein of unknown function DUF2648 CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 SUPERFAMILY SSF56349 68 364 1.8E-57 T 29-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 Gene3D G3DSA:1.10.443.10 177 359 1.5E-34 T 29-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 69 124 4.5E-14 T 29-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 Pfam PF00589 Phage integrase family 178 357 2.7E-24 T 29-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 Pfam PF14657 Arm DNA-binding domain 19 57 9.5E-8 T 29-03-2018 IPR028259 AP2-like integrase, N-terminal domain CFE88_RS07240 3176bc892957eceff2a2d01fefb6d094 368 Gene3D G3DSA:1.10.150.130 64 176 4.1E-14 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 13 163 7.8E-47 T 29-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 Pfam PF13353 4Fe-4S single cluster domain 22 161 2.1E-45 T 29-03-2018 CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 Gene3D G3DSA:3.80.30.20 24 149 6.3E-9 T 29-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 SUPERFAMILY SSF102114 34 133 5.69E-10 T 29-03-2018 CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 Pfam PF04055 Radical SAM superfamily 33 130 2.0E-7 T 29-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CFE88_RS11260 2a18d43b2d6533276dd57360ac26ab38 178 PIRSF PIRSF000368 3 178 1.6E-61 T 29-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CFE88_RS10935 165771cd5eb172cd139dfc84367bcda5 80 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 6 79 1.2E-9 T 29-03-2018 IPR024962 YukD-like CFE88_RS10935 165771cd5eb172cd139dfc84367bcda5 80 SUPERFAMILY SSF54236 11 79 2.12E-5 T 29-03-2018 IPR029071 Ubiquitin-related domain CFE88_RS10935 165771cd5eb172cd139dfc84367bcda5 80 Gene3D G3DSA:3.10.20.90 1 80 3.0E-4 T 29-03-2018 CFE88_RS01735 3b2eb9da5a7e0292f700a5255bd15a76 342 Gene3D G3DSA:2.130.10.10 3 339 8.6E-31 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CFE88_RS01735 3b2eb9da5a7e0292f700a5255bd15a76 342 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 341 1.6E-106 T 29-03-2018 IPR019405 Lactonase, 7-bladed beta propeller CFE88_RS01735 3b2eb9da5a7e0292f700a5255bd15a76 342 SUPERFAMILY SSF51004 13 319 9.94E-31 T 29-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 25 46 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 156 173 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 12 19 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 82 99 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 113 127 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 56 64 4.7E-34 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 SUPERFAMILY SSF53613 2 255 2.65E-59 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 Pfam PF02110 Hydroxyethylthiazole kinase family 4 249 2.1E-79 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 Gene3D G3DSA:3.40.1190.20 1 262 3.4E-51 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 4 249 3.1E-80 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 6 254 30.851 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01310 73237a62f18d04850cb8d837a4556945 262 PIRSF PIRSF000513 1 261 3.6E-88 T 29-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS05920 b8aefcc0bd0068b9120fcaceb2e3c16f 451 PIRSF PIRSF006446 1 451 2.5E-130 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CFE88_RS05920 b8aefcc0bd0068b9120fcaceb2e3c16f 451 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 435 3.0E-127 T 29-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 PIRSF PIRSF006276 1 146 5.6E-21 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 PRINTS PR01438 Universal stress protein signature 103 115 1.4E-18 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 PRINTS PR01438 Universal stress protein signature 121 143 1.4E-18 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 PRINTS PR01438 Universal stress protein signature 4 22 1.4E-18 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 SUPERFAMILY SSF52402 4 150 2.26E-35 T 29-03-2018 CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 Pfam PF00582 Universal stress protein family 4 143 3.7E-34 T 29-03-2018 IPR006016 UspA GO:0006950 CFE88_RS02770 ed416c1f1485710dc846dec03d0f120d 166 Gene3D G3DSA:3.40.50.620 2 155 5.0E-37 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS01510 2c1db46f600e2b9f17022b8593437d78 153 SUPERFAMILY SSF52540 20 125 3.71E-19 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS01510 2c1db46f600e2b9f17022b8593437d78 153 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 5 129 2.0E-36 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CFE88_RS01510 2c1db46f600e2b9f17022b8593437d78 153 Gene3D G3DSA:3.40.50.300 1 148 4.5E-47 T 29-03-2018 CFE88_RS01510 2c1db46f600e2b9f17022b8593437d78 153 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5 134 3.3E-37 T 29-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 186 2.1E-64 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 Gene3D G3DSA:3.40.50.1470 1 189 9.3E-71 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 SUPERFAMILY SSF53178 1 186 4.45E-67 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 Pfam PF01195 Peptidyl-tRNA hydrolase 4 186 5.7E-57 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 178 36.861 T 29-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CFE88_RS08855 e7b6626cf3eda9f7d6edefd76ad80667 190 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 29-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 SUPERFAMILY SSF51905 1 182 7.25E-18 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 Gene3D G3DSA:3.50.50.60 1 119 0.0068 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 250 272 7.8E-5 T 29-03-2018 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 7.8E-5 T 29-03-2018 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 95 113 7.8E-5 T 29-03-2018 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 SUPERFAMILY SSF51905 124 298 3.89E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 Gene3D G3DSA:3.50.50.60 120 297 2.8E-28 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 281 1.8E-36 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.4E-6 T 29-03-2018 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 167 1.4E-6 T 29-03-2018 CFE88_RS06830 b0db21fb2cfe8ab46976b3261ed407ed 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 272 1.4E-6 T 29-03-2018 CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 Pfam PF06971 Putative DNA-binding protein N-terminus 6 54 2.8E-18 T 29-03-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 SMART SM00881 81 181 4.6E-16 T 29-03-2018 IPR003781 CoA-binding GO:0048037 CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 SUPERFAMILY SSF51735 84 208 7.55E-28 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 Gene3D G3DSA:1.10.10.10 5 74 4.1E-24 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 SUPERFAMILY SSF46785 8 78 1.18E-19 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 2 210 37.171 T 29-03-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 Gene3D G3DSA:3.40.50.720 78 209 4.4E-18 T 29-03-2018 CFE88_RS01540 197b2d789b44f3c626f912ac96b330d2 211 Pfam PF02629 CoA binding domain 84 179 3.1E-25 T 29-03-2018 IPR003781 CoA-binding GO:0048037 CFE88_RS02980 5972b4f1c5ae4aca1ef48d69c34c481a 355 Pfam PF05145 Transition state regulatory protein AbrB 31 346 2.5E-79 T 29-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 CFE88_RS02980 5972b4f1c5ae4aca1ef48d69c34c481a 355 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 9 165 2.2E-42 T 29-03-2018 IPR017516 AbrB duplication CFE88_RS02980 5972b4f1c5ae4aca1ef48d69c34c481a 355 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 192 346 3.0E-32 T 29-03-2018 IPR017516 AbrB duplication CFE88_RS02980 5972b4f1c5ae4aca1ef48d69c34c481a 355 PIRSF PIRSF038991 1 355 3.4E-87 T 29-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 CFE88_RS06295 ba60b1c5db4e82cf33897be2d4f95db0 251 Gene3D G3DSA:3.40.50.1820 2 250 1.1E-15 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06295 ba60b1c5db4e82cf33897be2d4f95db0 251 SUPERFAMILY SSF53474 6 242 2.15E-32 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS06295 ba60b1c5db4e82cf33897be2d4f95db0 251 Pfam PF00756 Putative esterase 16 239 1.0E-46 T 29-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CFE88_RS11410 8dd846e4c022fdac91dd844c176c5283 444 Pfam PF13248 zinc-ribbon domain 1 24 1.8E-7 T 29-03-2018 CFE88_RS11410 8dd846e4c022fdac91dd844c176c5283 444 Gene3D G3DSA:2.20.70.10 1 23 0.0033 T 29-03-2018 CFE88_RS02315 2d5f33842786e76050df03226e1bc725 205 TIGRFAM TIGR00779 cad: cadmium resistance transporter family protein 12 205 8.6E-81 T 29-03-2018 IPR004676 Cadmium resistance transporter CFE88_RS02315 2d5f33842786e76050df03226e1bc725 205 Pfam PF03596 Cadmium resistance transporter 12 203 3.0E-82 T 29-03-2018 IPR004676 Cadmium resistance transporter CFE88_RS10005 e1eadd1c487c820a4d868bbbdb3283e0 115 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 115 2.4E-38 T 29-03-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 CFE88_RS08130 082a9155a82e1586113396322dce91a1 124 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 11 116 3.1E-34 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS08130 082a9155a82e1586113396322dce91a1 124 Gene3D G3DSA:1.10.10.10 2 124 1.2E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08130 082a9155a82e1586113396322dce91a1 124 SUPERFAMILY SSF46785 6 114 1.25E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06055 a12f46828798325db3a634ef696598d5 201 SUPERFAMILY SSF81452 15 196 3.27E-48 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06055 a12f46828798325db3a634ef696598d5 201 Pfam PF00510 Cytochrome c oxidase subunit III 19 196 8.7E-11 T 29-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06055 a12f46828798325db3a634ef696598d5 201 Gene3D G3DSA:1.20.120.80 12 198 6.2E-45 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS06055 a12f46828798325db3a634ef696598d5 201 TIGRFAM TIGR02897 QoxC: cytochrome aa3 quinol oxidase, subunit III 9 198 1.6E-101 T 29-03-2018 IPR014246 Quinol oxidase subunit III GO:0015002|GO:0016021|GO:0042773 CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 195 1.2E-32 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 SUPERFAMILY SSF52518 12 227 5.29E-77 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 Pfam PF12367 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 199 264 2.6E-21 T 29-03-2018 IPR032686 Pyruvate ferredoxin oxidoreductase beta subunit, C-terminal CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 14 267 1.2E-96 T 29-03-2018 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 Gene3D G3DSA:3.40.50.970 5 72 2.1E-15 T 29-03-2018 CFE88_RS04995 21211cc1837d16e1258ca53857b73760 288 Gene3D G3DSA:3.40.50.970 73 287 8.7E-46 T 29-03-2018 CFE88_RS00485 33ba39554166ee4980006c597bf859db 223 SUPERFAMILY SSF161098 4 213 4.19E-45 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS00485 33ba39554166ee4980006c597bf859db 223 Gene3D G3DSA:1.10.3720.10 4 221 2.2E-35 T 29-03-2018 CFE88_RS00485 33ba39554166ee4980006c597bf859db 223 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 8 216 3.6E-75 T 29-03-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 CFE88_RS00485 33ba39554166ee4980006c597bf859db 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 23 211 2.3E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04635 09932c173125c717da5f135d1ffe80ad 294 SMART SM00382 29 202 2.8E-5 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04635 09932c173125c717da5f135d1ffe80ad 294 Gene3D G3DSA:3.40.50.300 1 264 1.2E-50 T 29-03-2018 CFE88_RS04635 09932c173125c717da5f135d1ffe80ad 294 SUPERFAMILY SSF52540 3 223 9.55E-50 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04635 09932c173125c717da5f135d1ffe80ad 294 Pfam PF00005 ABC transporter 20 154 4.7E-24 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10065 6b68b4c89f888dc278304956a93c94a4 136 Pfam PF07252 Protein of unknown function (DUF1433) 36 128 2.5E-39 T 29-03-2018 IPR009881 Protein of unknown function DUF1433 CFE88_RS10065 6b68b4c89f888dc278304956a93c94a4 136 Gene3D G3DSA:3.10.450.130 35 134 3.5E-23 T 29-03-2018 CFE88_RS00075 91ec832141997b7c7de902300a4bff18 222 Gene3D G3DSA:3.40.50.300 2 222 2.3E-62 T 29-03-2018 CFE88_RS00075 91ec832141997b7c7de902300a4bff18 222 Pfam PF00005 ABC transporter 22 170 5.8E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS00075 91ec832141997b7c7de902300a4bff18 222 SMART SM00382 31 218 1.2E-12 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS00075 91ec832141997b7c7de902300a4bff18 222 SUPERFAMILY SSF52540 4 220 4.03E-62 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS03510 bf9275f22df1e5bbbae659aae0321579 486 Gene3D G3DSA:1.20.1540.10 154 336 2.5E-41 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CFE88_RS03510 bf9275f22df1e5bbbae659aae0321579 486 SUPERFAMILY SSF144091 154 336 7.06E-43 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CFE88_RS03510 bf9275f22df1e5bbbae659aae0321579 486 SUPERFAMILY SSF48452 369 478 1.63E-17 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03510 bf9275f22df1e5bbbae659aae0321579 486 Gene3D G3DSA:1.25.40.10 367 486 1.5E-12 T 29-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 CFE88_RS03510 bf9275f22df1e5bbbae659aae0321579 486 Pfam PF01694 Rhomboid family 199 334 1.1E-34 T 29-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 363 409 2.6E-9 T 29-03-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 SMART SM00849 23 217 4.2E-22 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 Gene3D G3DSA:3.60.15.10 3 450 1.5E-53 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 Hamap MF_01491 Ribonuclease J [rnj]. 6 557 43.151 T 29-03-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 PIRSF PIRSF004803 3 557 2.1E-194 T 29-03-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 Pfam PF00753 Metallo-beta-lactamase superfamily 23 167 1.8E-7 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 11 554 1.4E-181 T 29-03-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 CFE88_RS05070 86aa57d71972ec44db9da88e0c2d33b6 557 SUPERFAMILY SSF56281 11 424 2.1E-73 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 PIRSF PIRSF000164 16 354 8.5E-99 T 29-03-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 Gene3D G3DSA:3.20.20.70 1 354 4.2E-66 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 290 310 - T 29-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 SUPERFAMILY SSF51395 1 352 1.95E-88 T 29-03-2018 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 84 103 - T 29-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 353 6.6E-100 T 29-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CFE88_RS11425 0003955df838a10b09b1bacb9af04c4e 354 Pfam PF01180 Dihydroorotate dehydrogenase 49 338 5.9E-71 T 29-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CFE88_RS04710 69394af2c53b729e5617016dfefd478b 425 Pfam PF10651 Domain of unknown function (DUF2479) 3 139 6.8E-26 T 29-03-2018 IPR018913 Domain of unknown function DUF2479 CFE88_RS04710 69394af2c53b729e5617016dfefd478b 425 Gene3D G3DSA:1.20.120.20 130 340 7.6E-6 T 29-03-2018 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 667 3.9E-33 T 29-03-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Pfam PF04998 RNA polymerase Rpb1, domain 5 774 1134 7.6E-69 T 29-03-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 474 1.4E-38 T 29-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Pfam PF05000 RNA polymerase Rpb1, domain 4 696 763 1.3E-14 T 29-03-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Gene3D G3DSA:2.40.50.100 914 1033 2.4E-38 T 29-03-2018 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 SUPERFAMILY SSF64484 5 1184 0.0 T 29-03-2018 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Gene3D G3DSA:2.40.40.20 335 477 6.9E-39 T 29-03-2018 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1185 0.0 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1195 18.537 T 29-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 SMART SM00663 224 503 3.6E-182 T 29-03-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS08555 5a39b1ef9f8234633e1b0ce37751ef0f 1207 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 331 2.6E-88 T 29-03-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CFE88_RS06540 3bee56ecd5f5099a21836bb9ba070ecf 211 SUPERFAMILY SSF81301 3 199 3.19E-60 T 29-03-2018 CFE88_RS06540 3bee56ecd5f5099a21836bb9ba070ecf 211 Gene3D G3DSA:3.30.460.10 1 145 8.7E-37 T 29-03-2018 CFE88_RS06540 3bee56ecd5f5099a21836bb9ba070ecf 211 SMART SM00954 43 164 6.4E-40 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS06540 3bee56ecd5f5099a21836bb9ba070ecf 211 Pfam PF04607 Region found in RelA / SpoT proteins 43 162 4.5E-36 T 29-03-2018 IPR007685 RelA/SpoT GO:0015969 CFE88_RS06540 3bee56ecd5f5099a21836bb9ba070ecf 211 Gene3D G3DSA:1.10.287.860 147 195 4.2E-20 T 29-03-2018 CFE88_RS11775 5b41872ba9b81d8fc500785888410eba 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.7E-21 T 29-03-2018 IPR010035 ThiS, thiamine-biosynthesis CFE88_RS11775 5b41872ba9b81d8fc500785888410eba 66 SUPERFAMILY SSF54285 3 65 9.16E-16 T 29-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CFE88_RS11775 5b41872ba9b81d8fc500785888410eba 66 Gene3D G3DSA:3.10.20.30 1 66 1.7E-16 T 29-03-2018 IPR012675 Beta-grasp domain CFE88_RS11775 5b41872ba9b81d8fc500785888410eba 66 Pfam PF02597 ThiS family 5 66 2.6E-11 T 29-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 CFE88_RS04050 69ffce87154f945e1e504b6e9deaaa1f 145 Pfam PF06491 Disulphide isomerase 7 144 5.4E-56 T 29-03-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS04050 69ffce87154f945e1e504b6e9deaaa1f 145 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 7 144 7.0E-58 T 29-03-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 SMART SM00387 248 341 1.6E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 Pfam PF07730 Histidine kinase 147 210 3.8E-16 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 249 340 1.5E-7 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 Gene3D G3DSA:3.30.565.10 210 347 1.2E-24 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 SUPERFAMILY SSF55874 221 338 4.45E-16 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01905 ed9530955970a92d02a133758b2ce9af 348 PIRSF PIRSF037431 2 347 7.8E-122 T 29-03-2018 IPR017202 Sensor histidine kinase LiaS/VraS GO:0000155|GO:0000160|GO:0004673|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 115 8.3E-40 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 116 26.359 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 72 80 3.1E-12 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 81 90 3.1E-12 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 3.1E-12 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 Gene3D G3DSA:1.20.5.220 103 115 5.8E-4 T 29-03-2018 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 115 1.6E-37 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 SUPERFAMILY SSF81330 10 111 5.62E-32 T 29-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 CFE88_RS04485 12fce80f33bd1b21604a063c6d840db5 116 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 29-03-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site CFE88_RS01400 c61926eb96ad4c6f07bbf3b189959d2f 120 SUPERFAMILY SSF50118 1 113 8.18E-40 T 29-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS01400 c61926eb96ad4c6f07bbf3b189959d2f 120 Gene3D G3DSA:2.30.30.110 1 115 5.1E-38 T 29-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CFE88_RS01400 c61926eb96ad4c6f07bbf3b189959d2f 120 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 3 109 2.2E-32 T 29-03-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CFE88_RS01400 c61926eb96ad4c6f07bbf3b189959d2f 120 PIRSF PIRSF033490 1 112 7.8E-38 T 29-03-2018 IPR003477 mRNA interferase PemK-like GO:0003677 CFE88_RS05475 9c5f72a9bda1fc740ea3379de3e750be 265 Gene3D G3DSA:3.10.180.10 3 64 0.0023 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05475 9c5f72a9bda1fc740ea3379de3e750be 265 SUPERFAMILY SSF54593 167 242 2.17E-6 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05475 9c5f72a9bda1fc740ea3379de3e750be 265 SUPERFAMILY SSF54593 9 167 1.45E-21 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS05475 9c5f72a9bda1fc740ea3379de3e750be 265 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 122 9.4E-5 T 29-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CFE88_RS05475 9c5f72a9bda1fc740ea3379de3e750be 265 Gene3D G3DSA:3.10.180.10 65 226 2.1E-13 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS03080 66274894342911effdb6ee010e3709b9 86 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 3 83 2.7E-24 T 29-03-2018 IPR003849 Preprotein translocase YajC CFE88_RS03080 66274894342911effdb6ee010e3709b9 86 SMART SM01323 1 84 3.0E-35 T 29-03-2018 IPR003849 Preprotein translocase YajC CFE88_RS03080 66274894342911effdb6ee010e3709b9 86 PRINTS PR01853 Bacterial YajC preprotein translocase signature 23 41 2.3E-12 T 29-03-2018 IPR003849 Preprotein translocase YajC CFE88_RS03080 66274894342911effdb6ee010e3709b9 86 PRINTS PR01853 Bacterial YajC preprotein translocase signature 3 23 2.3E-12 T 29-03-2018 IPR003849 Preprotein translocase YajC CFE88_RS03080 66274894342911effdb6ee010e3709b9 86 Pfam PF02699 Preprotein translocase subunit 5 81 3.5E-27 T 29-03-2018 IPR003849 Preprotein translocase YajC CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 Gene3D G3DSA:3.40.190.10 153 307 1.5E-33 T 29-03-2018 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 83 97 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 300 326 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 112 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 193 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 40 56 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 130 146 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 56 77 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 2.0E-54 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 Gene3D G3DSA:3.40.190.10 26 152 1.4E-23 T 29-03-2018 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 Pfam PF13416 Bacterial extracellular solute-binding protein 50 319 3.2E-33 T 29-03-2018 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 SUPERFAMILY SSF53850 35 353 9.51E-87 T 29-03-2018 CFE88_RS05830 870bd5cceae9f95aca960bad357bb0a5 357 PIRSF PIRSF019574 1 356 9.0E-134 T 29-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CFE88_RS00490 cafda8d5c9ee48b6390361e0bee862b4 202 SUPERFAMILY SSF52540 13 201 6.98E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00490 cafda8d5c9ee48b6390361e0bee862b4 202 SMART SM00382 23 199 3.5E-11 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS00490 cafda8d5c9ee48b6390361e0bee862b4 202 Gene3D G3DSA:3.40.50.300 2 202 1.5E-46 T 29-03-2018 CFE88_RS00490 cafda8d5c9ee48b6390361e0bee862b4 202 Pfam PF00005 ABC transporter 22 154 9.8E-28 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS00490 cafda8d5c9ee48b6390361e0bee862b4 202 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 TIGRFAM TIGR02126 phgtail_TP901_1: phage major tail protein, TP901-1 family 6 133 1.2E-14 T 29-03-2018 IPR011855 Phage major tail protein TP901-1 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01997 Phage major tail protein 2 family signature 73 91 1.2E-37 T 29-03-2018 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01997 Phage major tail protein 2 family signature 126 145 1.2E-37 T 29-03-2018 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01997 Phage major tail protein 2 family signature 102 123 1.2E-37 T 29-03-2018 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01997 Phage major tail protein 2 family signature 43 61 1.2E-37 T 29-03-2018 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01997 Phage major tail protein 2 family signature 21 43 1.2E-37 T 29-03-2018 IPR022345 Bacteriophage 69, Orf23, major tail protein CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 34 57 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 102 120 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 123 146 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 7 30 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 63 91 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 PRINTS PR01998 Staphylococcal phage major tail protein signature 151 169 7.9E-52 T 29-03-2018 CFE88_RS04750 c0bf69ca26b5ee05f590c26c00005d2e 204 Pfam PF06199 Phage tail tube protein 4 139 2.1E-24 T 29-03-2018 IPR011855 Phage major tail protein TP901-1 CFE88_RS07020 56ab37d6d28f73b08354344e9e71ca5f 107 SUPERFAMILY SSF52833 4 106 1.06E-25 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS07020 56ab37d6d28f73b08354344e9e71ca5f 107 Gene3D G3DSA:3.40.30.10 1 107 3.2E-21 T 29-03-2018 CFE88_RS07020 56ab37d6d28f73b08354344e9e71ca5f 107 Pfam PF00085 Thioredoxin 5 103 3.4E-18 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 CFE88_RS06040 3c9b99a452e9b1746a9ce0ccc018f762 105 Gene3D G3DSA:2.60.40.10 28 105 4.1E-18 T 29-03-2018 IPR013783 Immunoglobulin-like fold CFE88_RS06040 3c9b99a452e9b1746a9ce0ccc018f762 105 Pfam PF16403 Domain of unknown function (DUF5011) 33 104 4.4E-24 T 29-03-2018 IPR032179 Domain of unknown function DUF5011 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Pfam PF03129 Anticodon binding domain 372 459 7.1E-23 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 SUPERFAMILY SSF55681 3 375 1.15E-126 T 29-03-2018 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 326 338 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 407 426 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 149 161 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 219 229 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 24 38 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 170 187 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 PRINTS PR01043 Glycyl-tRNA synthetase signature 202 219 4.4E-53 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 4 236 9.4E-88 T 29-03-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 SUPERFAMILY SSF52954 359 462 2.11E-33 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 163 286 2.7E-10 T 29-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Gene3D G3DSA:3.30.930.10 2 111 8.4E-22 T 29-03-2018 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Gene3D G3DSA:3.30.930.10 236 357 1.5E-43 T 29-03-2018 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Gene3D G3DSA:3.30.930.10 123 235 8.4E-33 T 29-03-2018 CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Gene3D G3DSA:3.40.50.800 358 462 2.6E-27 T 29-03-2018 IPR004154 Anticodon-binding CFE88_RS03425 642425719f9d37982528f6702ec0a29e 463 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 2 462 50.823 T 29-03-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 CFE88_RS12595 aee48765115e69c10e668eb90bfbdf1e 126 Gene3D G3DSA:1.10.4040.10 73 122 6.4E-15 T 29-03-2018 CFE88_RS12595 aee48765115e69c10e668eb90bfbdf1e 126 PIRSF PIRSF019455 1 126 1.3E-31 T 29-03-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 CFE88_RS12595 aee48765115e69c10e668eb90bfbdf1e 126 Gene3D G3DSA:1.10.10.10 9 72 2.6E-17 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12595 aee48765115e69c10e668eb90bfbdf1e 126 SUPERFAMILY SSF46785 6 125 3.34E-30 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12595 aee48765115e69c10e668eb90bfbdf1e 126 Pfam PF03965 Penicillinase repressor 8 121 6.9E-35 T 29-03-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 CFE88_RS00855 f41116495de63d3f3cdedaad97cf6e58 79 Pfam PF10031 Small integral membrane protein (DUF2273) 19 66 2.1E-14 T 29-03-2018 IPR018730 Protein of unknown function DUF2273 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 5 429 1.9E-213 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 Pfam PF02040 Arsenical pump membrane protein 5 426 3.4E-186 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 146 170 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 280 304 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 366 391 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 179 202 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 325 347 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS08425 ab8dd311941e746a049652d4baed0df3 430 PRINTS PR00758 Arsenical pump membrane protein signature 399 423 2.3E-110 T 29-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 CFE88_RS11185 0d56dde1e91ec8ccbf901ddfbccc8c4c 249 Gene3D G3DSA:2.20.28.20 3 25 9.0E-6 T 29-03-2018 CFE88_RS11185 0d56dde1e91ec8ccbf901ddfbccc8c4c 249 Pfam PF13248 zinc-ribbon domain 1 23 5.6E-7 T 29-03-2018 CFE88_RS11185 0d56dde1e91ec8ccbf901ddfbccc8c4c 249 Gene3D G3DSA:2.130.10.10 26 242 1.1E-5 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 SUPERFAMILY SSF50692 5 123 3.73E-48 T 29-03-2018 IPR009010 Aspartate decarboxylase-like domain CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 5 123 1.4E-51 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 131 66.933 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 Gene3D G3DSA:2.40.40.20 4 120 2.8E-51 T 29-03-2018 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 Pfam PF02261 Aspartate decarboxylase 5 117 5.6E-50 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 9 99 9.0E-47 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CFE88_RS11400 5b8c5fa349c2078dc4a5ae4c4440b268 131 PIRSF PIRSF006246 4 131 3.0E-54 T 29-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 32.91 T 29-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 PIRSF PIRSF001223 1 100 5.1E-50 T 29-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-37 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 SUPERFAMILY SSF54111 2 99 2.09E-44 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 2 99 2.5E-47 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 Pfam PF00547 Urease, gamma subunit 2 99 1.6E-45 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00445 409d8bc7a3e3f9b12c032c89bd72522c 100 Gene3D G3DSA:3.30.280.10 2 99 1.1E-46 T 29-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS02415 a5be260e7a7965099adc22bc6fb6824a 83 SMART SM01234 2 69 6.7E-46 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02415 a5be260e7a7965099adc22bc6fb6824a 83 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 25.58 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02415 a5be260e7a7965099adc22bc6fb6824a 83 Pfam PF01809 Haemolytic domain 3 69 2.2E-30 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02415 a5be260e7a7965099adc22bc6fb6824a 83 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 6 78 1.7E-32 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS02415 a5be260e7a7965099adc22bc6fb6824a 83 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 17 69 2.0E-25 T 29-03-2018 IPR002696 Putative membrane protein insertion efficiency factor CFE88_RS12085 cd814f3cf7810fb594da5fcd4410b7bc 400 SUPERFAMILY SSF103473 8 393 6.67E-55 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS12085 cd814f3cf7810fb594da5fcd4410b7bc 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 11 388 6.7E-72 T 29-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 CFE88_RS12085 cd814f3cf7810fb594da5fcd4410b7bc 400 Pfam PF07690 Major Facilitator Superfamily 21 361 2.6E-36 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS12085 cd814f3cf7810fb594da5fcd4410b7bc 400 Gene3D G3DSA:1.20.1250.20 2 200 2.6E-28 T 29-03-2018 CFE88_RS12085 cd814f3cf7810fb594da5fcd4410b7bc 400 Gene3D G3DSA:1.20.1250.20 201 400 9.6E-15 T 29-03-2018 CFE88_RS01775 d6ccb85ca10770240ddadf4ecfc012ac 275 Gene3D G3DSA:3.40.50.620 3 271 3.3E-56 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS01775 d6ccb85ca10770240ddadf4ecfc012ac 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 18 267 29.607 T 29-03-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 CFE88_RS01775 d6ccb85ca10770240ddadf4ecfc012ac 275 Pfam PF02540 NAD synthase 24 264 9.7E-69 T 29-03-2018 IPR022310 NAD/GMP synthase CFE88_RS01775 d6ccb85ca10770240ddadf4ecfc012ac 275 SUPERFAMILY SSF52402 4 270 9.16E-76 T 29-03-2018 CFE88_RS01775 d6ccb85ca10770240ddadf4ecfc012ac 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 21 263 3.2E-70 T 29-03-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CFE88_RS07145 fec91e5904999087aa74559bd674a4a7 152 SUPERFAMILY SSF55136 1 151 1.5E-23 T 29-03-2018 CFE88_RS07145 fec91e5904999087aa74559bd674a4a7 152 Pfam PF06445 GyrI-like small molecule binding domain 1 151 2.7E-18 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain CFE88_RS07145 fec91e5904999087aa74559bd674a4a7 152 Gene3D G3DSA:3.20.80.10 1 152 2.4E-21 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain CFE88_RS07145 fec91e5904999087aa74559bd674a4a7 152 SMART SM00871 1 152 1.2E-20 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding CFE88_RS12080 a857456c21dcf67ad1807329f367f953 202 Gene3D G3DSA:3.90.70.10 18 202 1.8E-15 T 29-03-2018 CFE88_RS12080 a857456c21dcf67ad1807329f367f953 202 PIRSF PIRSF032442 1 202 9.7E-60 T 29-03-2018 IPR016997 Uncharacterised conserved protein UCP032442 CFE88_RS12080 a857456c21dcf67ad1807329f367f953 202 Pfam PF13529 Peptidase_C39 like family 6 157 2.9E-19 T 29-03-2018 CFE88_RS01800 f25f4698fd325dfa4db28eebe9788561 230 Hamap MF_00112 Geranylgeranylglyceryl phosphate synthase [pcrB]. 3 226 25.656 T 29-03-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 CFE88_RS01800 f25f4698fd325dfa4db28eebe9788561 230 TIGRFAM TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein 9 223 4.6E-63 T 29-03-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 CFE88_RS01800 f25f4698fd325dfa4db28eebe9788561 230 SUPERFAMILY SSF51395 5 224 3.11E-49 T 29-03-2018 CFE88_RS01800 f25f4698fd325dfa4db28eebe9788561 230 Gene3D G3DSA:3.20.20.390 2 224 4.1E-27 T 29-03-2018 CFE88_RS01800 f25f4698fd325dfa4db28eebe9788561 230 Pfam PF01884 PcrB family 2 224 4.7E-71 T 29-03-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 CFE88_RS00830 7831b2e15492daaa71c209e7bf84f555 289 Gene3D G3DSA:3.40.50.1820 40 288 1.8E-22 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00830 7831b2e15492daaa71c209e7bf84f555 289 SUPERFAMILY SSF53474 48 281 6.86E-12 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS00830 7831b2e15492daaa71c209e7bf84f555 289 Pfam PF06028 Alpha/beta hydrolase of unknown function (DUF915) 36 288 5.9E-100 T 29-03-2018 IPR010315 Protein of unknown function DUF915, hydrolase-like CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 Gene3D G3DSA:3.90.1150.10 315 429 1.1E-16 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 9 427 1.7E-166 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 Gene3D G3DSA:3.90.1150.10 1 170 1.2E-41 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 428 89.73 T 29-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 Gene3D G3DSA:3.40.640.10 171 314 4.8E-36 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 Pfam PF00202 Aminotransferase class-III 35 412 4.1E-75 T 29-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CFE88_RS02010 d574248b3bf8ae4999450d335f06ac8e 429 SUPERFAMILY SSF53383 2 427 8.41E-124 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS04160 81d54d8d5f5efcf204a43553b52fcf47 276 Pfam PF00005 ABC transporter 21 150 1.8E-19 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS04160 81d54d8d5f5efcf204a43553b52fcf47 276 Gene3D G3DSA:3.40.50.300 3 254 1.4E-40 T 29-03-2018 CFE88_RS04160 81d54d8d5f5efcf204a43553b52fcf47 276 SMART SM00382 30 205 1.6E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS04160 81d54d8d5f5efcf204a43553b52fcf47 276 SUPERFAMILY SSF52540 6 198 2.92E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08345 e8b5b534ce76634e955de26c89e95f98 326 SUPERFAMILY SSF56235 2 323 2.47E-96 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS08345 e8b5b534ce76634e955de26c89e95f98 326 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 2 310 4.1E-74 T 29-03-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal CFE88_RS08345 e8b5b534ce76634e955de26c89e95f98 326 Gene3D G3DSA:3.60.60.10 2 326 3.6E-71 T 29-03-2018 CFE88_RS07940 0394eece575e3a5fe4b56b112553f83c 633 Pfam PF02687 FtsX-like permease family 89 182 7.9E-7 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CFE88_RS07940 0394eece575e3a5fe4b56b112553f83c 633 PIRSF PIRSF018968 5 633 5.2E-99 T 29-03-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0006810 CFE88_RS00105 384ac42d3ac5e2a5e646fbe2d2173bd1 215 Gene3D G3DSA:2.40.50.100 42 116 4.3E-12 T 29-03-2018 CFE88_RS00105 384ac42d3ac5e2a5e646fbe2d2173bd1 215 SUPERFAMILY SSF51230 37 115 1.57E-5 T 29-03-2018 IPR011053 Single hybrid motif CFE88_RS00105 384ac42d3ac5e2a5e646fbe2d2173bd1 215 Pfam PF13437 HlyD family secretion protein 91 198 2.7E-10 T 29-03-2018 CFE88_RS00105 384ac42d3ac5e2a5e646fbe2d2173bd1 215 Pfam PF13533 Biotin-lipoyl like 44 73 2.3E-5 T 29-03-2018 CFE88_RS07480 7636deb8b4293470e084ef46713f69bc 106 Pfam PF11009 Protein of unknown function (DUF2847) 4 101 2.5E-33 T 29-03-2018 IPR022551 Protein of unknown function DUF2847 CFE88_RS07480 7636deb8b4293470e084ef46713f69bc 106 Gene3D G3DSA:3.40.30.10 2 103 8.6E-39 T 29-03-2018 CFE88_RS07480 7636deb8b4293470e084ef46713f69bc 106 SUPERFAMILY SSF52833 3 92 3.45E-8 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS07480 7636deb8b4293470e084ef46713f69bc 106 TIGRFAM TIGR04019 B_thiol_YtxJ: bacillithiol system protein YtxJ 4 102 3.9E-33 T 29-03-2018 IPR022551 Protein of unknown function DUF2847 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 SUPERFAMILY SSF52768 9 310 1.04E-70 T 29-03-2018 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 Hamap MF_00737 Formimidoylglutamase [hutG]. 5 311 36.516 T 29-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 PIRSF PIRSF036979 21 311 1.1E-30 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 TIGRFAM TIGR01227 hutG: formimidoylglutamase 10 310 9.3E-121 T 29-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 Pfam PF00491 Arginase family 45 309 6.8E-49 T 29-03-2018 IPR006035 Ureohydrolase GO:0046872 CFE88_RS00210 7ccce00d82855c2360eda048c1b32175 311 Gene3D G3DSA:3.40.800.10 1 311 4.0E-70 T 29-03-2018 CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 Gene3D G3DSA:3.40.50.720 41 265 8.3E-64 T 29-03-2018 CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 Gene3D G3DSA:3.40.50.720 1 40 6.4E-9 T 29-03-2018 CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.0E-45 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 8.1E-70 T 29-03-2018 CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 SUPERFAMILY SSF51735 5 255 1.32E-82 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS11920 9449338f2bf1bc6be10093675aecfb71 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.1E-12 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 29-03-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 142 1.5E-53 T 29-03-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 1.0E-37 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 SUPERFAMILY SSF52080 4 142 3.79E-47 T 29-03-2018 IPR021131 Ribosomal protein L18e/L15P CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 Gene3D G3DSA:3.100.10.10 39 146 5.1E-32 T 29-03-2018 CFE88_RS00710 3d5d62d5ff6300a741b145ccf72d3fe3 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 21.838 T 29-03-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 CFE88_RS00815 29abae212b9e818f472a8c10d16d6324 104 PIRSF PIRSF000699 1 104 8.2E-41 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CFE88_RS00815 29abae212b9e818f472a8c10d16d6324 104 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 10 101 6.0E-35 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CFE88_RS00815 29abae212b9e818f472a8c10d16d6324 104 TIGRFAM TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component 4 102 1.2E-45 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CFE88_RS00815 29abae212b9e818f472a8c10d16d6324 104 SUPERFAMILY SSF46973 1 102 1.83E-34 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CFE88_RS00815 29abae212b9e818f472a8c10d16d6324 104 Gene3D G3DSA:1.20.58.80 4 102 2.2E-37 T 29-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CFE88_RS01305 f7eeec8dcf778f60d70adc71ff8e6200 273 Gene3D G3DSA:3.40.1190.20 1 271 1.8E-59 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS01305 f7eeec8dcf778f60d70adc71ff8e6200 273 Pfam PF08543 Phosphomethylpyrimidine kinase 14 260 4.6E-94 T 29-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CFE88_RS01305 f7eeec8dcf778f60d70adc71ff8e6200 273 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 7 262 4.7E-94 T 29-03-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CFE88_RS01305 f7eeec8dcf778f60d70adc71ff8e6200 273 SUPERFAMILY SSF53613 5 266 7.48E-78 T 29-03-2018 IPR029056 Ribokinase-like CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 Gene3D G3DSA:3.40.50.300 309 455 1.8E-4 T 29-03-2018 CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 Gene3D G3DSA:3.10.590.10 142 289 2.7E-16 T 29-03-2018 CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 Gene3D G3DSA:3.10.590.10 5 141 2.5E-11 T 29-03-2018 CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 Pfam PF01878 EVE domain 164 270 6.6E-8 T 29-03-2018 IPR002740 EVE domain CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 SUPERFAMILY SSF88697 141 277 5.14E-20 T 29-03-2018 IPR015947 PUA-like domain CFE88_RS01065 5ddc97ed795944088d68b28a4792038f 458 SUPERFAMILY SSF88697 6 133 7.29E-14 T 29-03-2018 IPR015947 PUA-like domain CFE88_RS01720 31c81c11f7269f638c45528a69bdf45f 346 Gene3D G3DSA:3.60.60.10 99 316 1.0E-25 T 29-03-2018 CFE88_RS01720 31c81c11f7269f638c45528a69bdf45f 346 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 103 312 5.5E-72 T 29-03-2018 IPR005079 Peptidase C45 CFE88_RS01720 31c81c11f7269f638c45528a69bdf45f 346 SUPERFAMILY SSF56235 104 321 1.7E-10 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS06820 8b0286d2a8bef988fb505ece2741b172 119 Gene3D G3DSA:2.60.300.12 3 112 3.3E-34 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CFE88_RS06820 8b0286d2a8bef988fb505ece2741b172 119 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 90 107 - T 29-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 CFE88_RS06820 8b0286d2a8bef988fb505ece2741b172 119 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 104 1.7E-17 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CFE88_RS06820 8b0286d2a8bef988fb505ece2741b172 119 SUPERFAMILY SSF89360 3 97 2.75E-26 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CFE88_RS06820 8b0286d2a8bef988fb505ece2741b172 119 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 4 108 1.9E-33 T 29-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 SUPERFAMILY SSF52788 1 133 9.68E-29 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 132 6.1E-23 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 SMART SM00226 1 137 7.9E-21 T 29-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 Gene3D G3DSA:3.40.50.2300 1 137 2.3E-27 T 29-03-2018 CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 1.1E-10 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 71 86 1.1E-10 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS01200 201eaa7f39853a0d0e322f94f0681aec 139 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 109 124 1.1E-10 T 29-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CFE88_RS10400 1642bc1f1139ad92aa8f277e9f259a68 319 Gene3D G3DSA:3.40.190.10 21 184 1.1E-27 T 29-03-2018 CFE88_RS10400 1642bc1f1139ad92aa8f277e9f259a68 319 Gene3D G3DSA:3.40.190.10 185 307 1.9E-24 T 29-03-2018 CFE88_RS10400 1642bc1f1139ad92aa8f277e9f259a68 319 SUPERFAMILY SSF53850 33 304 5.63E-65 T 29-03-2018 CFE88_RS10400 1642bc1f1139ad92aa8f277e9f259a68 319 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 33 301 3.5E-54 T 29-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 CFE88_RS05790 c43f0b2f2e89e5ae31f35d30fa8261a1 51 Pfam PF09963 Uncharacterized protein conserved in bacteria (DUF2197) 2 45 1.1E-19 T 29-03-2018 IPR019241 Protein of unknown function DUF2197 CFE88_RS07870 1e370153505ee79b2c969b024aeebdeb 402 Gene3D G3DSA:1.20.1250.20 207 397 1.4E-23 T 29-03-2018 CFE88_RS07870 1e370153505ee79b2c969b024aeebdeb 402 Gene3D G3DSA:1.20.1250.20 2 206 1.6E-23 T 29-03-2018 CFE88_RS07870 1e370153505ee79b2c969b024aeebdeb 402 Pfam PF07690 Major Facilitator Superfamily 17 300 9.1E-28 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS07870 1e370153505ee79b2c969b024aeebdeb 402 SUPERFAMILY SSF103473 11 393 3.4E-48 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 Gene3D G3DSA:3.60.20.10 11 239 2.1E-52 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 PIRSF PIRSF000485 7 474 2.3E-163 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 Pfam PF00156 Phosphoribosyl transferase domain 268 382 1.2E-10 T 29-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 SUPERFAMILY SSF53271 249 464 1.15E-66 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 SUPERFAMILY SSF56235 11 234 1.37E-62 T 29-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 11 457 1.5E-142 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 Pfam PF13537 Glutamine amidotransferase domain 93 209 5.4E-19 T 29-03-2018 IPR017932 Glutamine amidotransferase type 2 domain CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 10 456 43.492 T 29-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CFE88_RS06000 d39d67dc543df80bdcfebb3bb6551305 494 Gene3D G3DSA:3.40.50.2020 240 438 6.4E-33 T 29-03-2018 CFE88_RS07025 cf13df0cfae2350ba752867bfb96db98 180 Pfam PF00881 Nitroreductase family 7 156 3.6E-20 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CFE88_RS07025 cf13df0cfae2350ba752867bfb96db98 180 SUPERFAMILY SSF55469 2 175 9.55E-30 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS07025 cf13df0cfae2350ba752867bfb96db98 180 Gene3D G3DSA:3.40.109.10 1 179 1.5E-24 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS06995 8bc3990fdc975736158786be341d6042 98 Pfam PF00085 Thioredoxin 12 87 8.4E-7 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 CFE88_RS06995 8bc3990fdc975736158786be341d6042 98 SUPERFAMILY SSF52833 6 97 5.21E-14 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS06995 8bc3990fdc975736158786be341d6042 98 Gene3D G3DSA:3.40.30.10 18 98 8.0E-8 T 29-03-2018 CFE88_RS04190 bc0cb4bcec9d7143c6d3a56c16163aac 629 SUPERFAMILY SSF53300 437 623 8.75E-16 T 29-03-2018 IPR002035 von Willebrand factor, type A CFE88_RS04190 bc0cb4bcec9d7143c6d3a56c16163aac 629 Pfam PF00092 von Willebrand factor type A domain 439 583 2.6E-5 T 29-03-2018 IPR002035 von Willebrand factor, type A CFE88_RS04190 bc0cb4bcec9d7143c6d3a56c16163aac 629 Gene3D G3DSA:3.40.50.410 428 613 2.4E-12 T 29-03-2018 IPR002035 von Willebrand factor, type A CFE88_RS04190 bc0cb4bcec9d7143c6d3a56c16163aac 629 SMART SM00327 434 625 1.1E-13 T 29-03-2018 IPR002035 von Willebrand factor, type A CFE88_RS06620 187ddc06e87ea74ee0f3b8d414520878 308 SUPERFAMILY SSF161098 87 285 1.09E-18 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06620 187ddc06e87ea74ee0f3b8d414520878 308 Gene3D G3DSA:1.10.3720.10 1 291 1.7E-40 T 29-03-2018 CFE88_RS06620 187ddc06e87ea74ee0f3b8d414520878 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 302 6.4E-38 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS08270 88a1532b57531fff234c3a928856a363 140 Gene3D G3DSA:1.10.10.10 1 140 1.1E-8 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08270 88a1532b57531fff234c3a928856a363 140 Pfam PF02082 Transcriptional regulator 3 79 1.7E-18 T 29-03-2018 IPR000944 Transcription regulator Rrf2-type CFE88_RS08270 88a1532b57531fff234c3a928856a363 140 SUPERFAMILY SSF46785 2 136 1.18E-22 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07075 e4929831cd36f5b80e2e648c4e009077 184 SUPERFAMILY SSF54001 35 169 6.87E-11 T 29-03-2018 CFE88_RS07075 e4929831cd36f5b80e2e648c4e009077 184 Gene3D G3DSA:3.90.1720.10 32 183 2.5E-9 T 29-03-2018 CFE88_RS04925 b7f7bd8bb1dcae01ba5b05b2c1be5a57 79 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 1.3E-30 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CFE88_RS04925 b7f7bd8bb1dcae01ba5b05b2c1be5a57 79 Gene3D G3DSA:2.30.30.100 5 69 1.3E-27 T 29-03-2018 CFE88_RS04925 b7f7bd8bb1dcae01ba5b05b2c1be5a57 79 Pfam PF17209 Hfq protein 7 66 1.0E-25 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CFE88_RS04925 b7f7bd8bb1dcae01ba5b05b2c1be5a57 79 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 65 27.345 T 29-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CFE88_RS04925 b7f7bd8bb1dcae01ba5b05b2c1be5a57 79 SUPERFAMILY SSF50182 6 64 2.29E-20 T 29-03-2018 IPR010920 LSM domain CFE88_RS06985 a437795c2fd0fd4cc4348d028c124d76 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 231 5.3E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06985 a437795c2fd0fd4cc4348d028c124d76 231 SUPERFAMILY SSF161098 20 221 1.22E-46 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06985 a437795c2fd0fd4cc4348d028c124d76 231 Gene3D G3DSA:1.10.3720.10 16 231 2.7E-43 T 29-03-2018 CFE88_RS03785 006cc14e08ad84f59964bcfd783cdded 266 Hamap MF_01805 Segregation and condensation protein A [scpA]. 25 261 24.122 T 29-03-2018 IPR003768 Segregation and condensation protein A CFE88_RS03785 006cc14e08ad84f59964bcfd783cdded 266 Gene3D G3DSA:1.10.10.580 188 258 1.9E-10 T 29-03-2018 CFE88_RS03785 006cc14e08ad84f59964bcfd783cdded 266 Pfam PF02616 Segregation and condensation protein ScpA 42 257 6.7E-36 T 29-03-2018 IPR003768 Segregation and condensation protein A CFE88_RS00695 4fa1f57192c2a44a5b5874f40204a7d7 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 120 3.5E-43 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00695 4fa1f57192c2a44a5b5874f40204a7d7 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 120 8.2E-49 T 29-03-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00695 4fa1f57192c2a44a5b5874f40204a7d7 120 SUPERFAMILY SSF53137 7 118 1.66E-51 T 29-03-2018 CFE88_RS00695 4fa1f57192c2a44a5b5874f40204a7d7 120 Gene3D G3DSA:3.30.420.100 2 120 9.2E-42 T 29-03-2018 CFE88_RS00695 4fa1f57192c2a44a5b5874f40204a7d7 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 6 120 29.424 T 29-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS06970 f52966b10f04f6d727634e4923061db4 63 Gene3D G3DSA:1.10.1470.10 1 63 1.9E-15 T 29-03-2018 IPR008462 CsbD-like domain CFE88_RS06970 f52966b10f04f6d727634e4923061db4 63 SUPERFAMILY SSF69047 3 60 1.05E-10 T 29-03-2018 IPR008462 CsbD-like domain CFE88_RS06970 f52966b10f04f6d727634e4923061db4 63 Pfam PF05532 CsbD-like 2 52 1.4E-14 T 29-03-2018 IPR008462 CsbD-like domain CFE88_RS10840 3a5949680e3d82dc119ed03d35a2abb6 721 Gene3D G3DSA:3.90.20.10 464 720 0.033 T 29-03-2018 CFE88_RS10840 3a5949680e3d82dc119ed03d35a2abb6 721 Gene3D G3DSA:1.20.120.330 321 463 0.048 T 29-03-2018 CFE88_RS11060 bf0855fddc8ae19239c1d43d46c5e08e 53 Pfam PF13930 DNA/RNA non-specific endonuclease 2 43 6.3E-7 T 29-03-2018 CFE88_RS07615 f8f4ccbb155da101bb4956b08beb1759 334 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 5 322 2.0E-69 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS07615 f8f4ccbb155da101bb4956b08beb1759 334 SUPERFAMILY SSF50891 201 305 5.31E-5 T 29-03-2018 IPR029000 Cyclophilin-like domain CFE88_RS07615 f8f4ccbb155da101bb4956b08beb1759 334 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 299 5.9E-70 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS07615 f8f4ccbb155da101bb4956b08beb1759 334 SMART SM00797 24 316 8.4E-108 T 29-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CFE88_RS01220 82c2cb9538ab1db3a48434d046c173f5 382 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 365 5.2E-158 T 29-03-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 CFE88_RS01220 82c2cb9538ab1db3a48434d046c173f5 382 SUPERFAMILY SSF53756 2 373 4.92E-137 T 29-03-2018 CFE88_RS01220 82c2cb9538ab1db3a48434d046c173f5 382 Gene3D G3DSA:3.40.50.2000 204 349 1.8E-38 T 29-03-2018 CFE88_RS01220 82c2cb9538ab1db3a48434d046c173f5 382 Gene3D G3DSA:3.40.50.2000 3 203 8.3E-79 T 29-03-2018 CFE88_RS01220 82c2cb9538ab1db3a48434d046c173f5 382 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 363 2.7E-120 T 29-03-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001 CFE88_RS00055 599b9d14890ee9ab0b466bf13c3052eb 495 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 11 490 5.7E-215 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS00055 599b9d14890ee9ab0b466bf13c3052eb 495 SUPERFAMILY SSF51905 10 277 3.88E-21 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS00055 599b9d14890ee9ab0b466bf13c3052eb 495 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 10 493 2.9E-234 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS00055 599b9d14890ee9ab0b466bf13c3052eb 495 Gene3D G3DSA:3.50.50.60 3 435 1.3E-14 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS00055 599b9d14890ee9ab0b466bf13c3052eb 495 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 7 494 53.187 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS00590 ab2ee3b9cca6e8df6d7763831716b0c9 287 SUPERFAMILY SSF103481 43 139 7.72E-5 T 29-03-2018 CFE88_RS00590 ab2ee3b9cca6e8df6d7763831716b0c9 287 SUPERFAMILY SSF103481 199 278 1.7E-7 T 29-03-2018 CFE88_RS00590 ab2ee3b9cca6e8df6d7763831716b0c9 287 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 4 284 2.6E-96 T 29-03-2018 CFE88_RS00590 ab2ee3b9cca6e8df6d7763831716b0c9 287 Pfam PF06800 Sugar transport protein 7 284 2.1E-102 T 29-03-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 SUPERFAMILY SSF52540 104 317 6.23E-45 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 112 348 3.9E-86 T 29-03-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 29-03-2018 IPR000808 Mrp, conserved site GO:0005524 CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 Gene3D G3DSA:3.40.50.300 96 322 3.6E-50 T 29-03-2018 CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 Gene3D G3DSA:3.30.300.130 2 95 1.6E-4 T 29-03-2018 IPR034904 Fe-S cluster assembly domain CFE88_RS00945 1b94c1e154b00c8ed367bc2be1019eea 355 Hamap MF_02040 Iron-sulfur cluster carrier protein. 101 349 33.169 T 29-03-2018 IPR019591 Mrp/NBP35 ATP-binding protein CFE88_RS05975 5be24f2332ac318ed9225e8337c81d91 279 Pfam PF02361 Cobalt transport protein 25 229 1.3E-21 T 29-03-2018 IPR003339 ABC/ECF transporter, transmembrane component CFE88_RS11895 68001eec4ec7d663501063552447bfd4 99 Pfam PF07205 Domain of unknown function (DUF1413) 14 72 6.1E-12 T 29-03-2018 IPR010813 Protein of unknown function DUF1413 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 231 246 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 127 144 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PIRSF PIRSF000097 1 274 3.6E-92 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 Gene3D G3DSA:3.20.20.100 1 273 3.2E-97 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 Pfam PF00248 Aldo/keto reductase family 14 263 2.1E-48 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PRINTS PR00069 Aldo-keto reductase signature 95 113 2.8E-48 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PRINTS PR00069 Aldo-keto reductase signature 161 190 2.8E-48 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PRINTS PR00069 Aldo-keto reductase signature 35 59 2.8E-48 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PRINTS PR00069 Aldo-keto reductase signature 127 144 2.8E-48 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 PRINTS PR00069 Aldo-keto reductase signature 198 222 2.8E-48 T 29-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 29-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CFE88_RS02445 54eb70bd4f35fd655242c1314a7c08a3 278 SUPERFAMILY SSF51430 5 269 1.44E-91 T 29-03-2018 IPR023210 NADP-dependent oxidoreductase domain CFE88_RS10695 efc42a9c6e96af71a957f78886b6707c 391 Gene3D G3DSA:1.20.1250.20 195 376 1.8E-11 T 29-03-2018 CFE88_RS10695 efc42a9c6e96af71a957f78886b6707c 391 Gene3D G3DSA:1.20.1250.20 2 194 2.4E-21 T 29-03-2018 CFE88_RS10695 efc42a9c6e96af71a957f78886b6707c 391 Pfam PF07690 Major Facilitator Superfamily 12 346 1.7E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS10695 efc42a9c6e96af71a957f78886b6707c 391 SUPERFAMILY SSF103473 5 383 6.41E-45 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS04730 735d9da6ba4a9e04ed628421e5e3f776 311 Pfam PF05709 Phage tail protein 23 309 1.8E-36 T 29-03-2018 IPR008841 Siphovirus-type tail component CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 SUPERFAMILY SSF52096 5 268 2.56E-79 T 29-03-2018 IPR029045 ClpP/crotonase-like domain CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 Gene3D G3DSA:1.10.12.10 212 260 2.1E-15 T 29-03-2018 IPR014748 Crontonase, C-terminal CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 Gene3D G3DSA:3.90.226.10 1 211 2.5E-62 T 29-03-2018 CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 110 130 - T 29-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 5 271 55.345 T 29-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 TIGRFAM TIGR01929 menB: naphthoate synthase 11 268 2.2E-129 T 29-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 CFE88_RS06120 1d900cfc21635a368fddb89f83cf43f3 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 267 3.7E-90 T 29-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 CFE88_RS12275 df48aa31f540287e4a84a75f6d197db1 154 SUPERFAMILY SSF50475 21 142 5.24E-23 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS12275 df48aa31f540287e4a84a75f6d197db1 154 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 23 136 7.6E-16 T 29-03-2018 CFE88_RS12275 df48aa31f540287e4a84a75f6d197db1 154 Gene3D G3DSA:2.30.110.10 16 149 5.2E-17 T 29-03-2018 IPR012349 FMN-binding split barrel GO:0048037 CFE88_RS03540 156a2b2ba5947c905618b071b32dfbde 355 PRINTS PR00812 Bacterial general secretion pathway protein F signature 117 145 1.7E-5 T 29-03-2018 IPR003004 GspF/PilC family CFE88_RS03540 156a2b2ba5947c905618b071b32dfbde 355 PRINTS PR00812 Bacterial general secretion pathway protein F signature 335 354 1.7E-5 T 29-03-2018 IPR003004 GspF/PilC family CFE88_RS03540 156a2b2ba5947c905618b071b32dfbde 355 Pfam PF00482 Type II secretion system (T2SS), protein F 225 346 8.2E-16 T 29-03-2018 IPR018076 Type II secretion system F domain CFE88_RS03540 156a2b2ba5947c905618b071b32dfbde 355 Pfam PF00482 Type II secretion system (T2SS), protein F 26 145 1.8E-9 T 29-03-2018 IPR018076 Type II secretion system F domain CFE88_RS00835 0a76db1ce5a61207cb0db3fa19cc1b5a 348 Pfam PF00296 Luciferase-like monooxygenase 23 308 4.1E-28 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS00835 0a76db1ce5a61207cb0db3fa19cc1b5a 348 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 10 337 1.7E-113 T 29-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 CFE88_RS00835 0a76db1ce5a61207cb0db3fa19cc1b5a 348 SUPERFAMILY SSF51679 8 341 4.71E-64 T 29-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CFE88_RS00835 0a76db1ce5a61207cb0db3fa19cc1b5a 348 Gene3D G3DSA:3.20.20.30 8 344 1.5E-66 T 29-03-2018 CFE88_RS11475 ce5fa9c2e17366fa6234397182207ceb 391 SUPERFAMILY SSF53383 6 385 6.6E-88 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS11475 ce5fa9c2e17366fa6234397182207ceb 391 Gene3D G3DSA:3.90.1150.10 287 386 1.4E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS11475 ce5fa9c2e17366fa6234397182207ceb 391 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 29-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CFE88_RS11475 ce5fa9c2e17366fa6234397182207ceb 391 Gene3D G3DSA:3.40.640.10 72 286 5.8E-39 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS11475 ce5fa9c2e17366fa6234397182207ceb 391 Pfam PF00155 Aminotransferase class I and II 35 382 2.1E-58 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CFE88_RS12525 a3a0b231b89d82de1201b810e5f4988b 129 Gene3D G3DSA:1.10.1220.10 51 106 4.7E-4 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CFE88_RS12470 a3a0b231b89d82de1201b810e5f4988b 129 Gene3D G3DSA:1.10.1220.10 51 106 4.7E-4 T 29-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CFE88_RS10150 87021acf78c1c2d627d2df3aa27ae4c3 518 TIGRFAM TIGR03713 acc_sec_asp1: accessory Sec system protein Asp1 1 511 6.1E-173 T 29-03-2018 IPR022372 Accessory secretory system protein Asp1 GO:0015031 CFE88_RS10150 87021acf78c1c2d627d2df3aa27ae4c3 518 Pfam PF16993 Accessory Sec system protein Asp1 1 513 4.5E-99 T 29-03-2018 IPR022372 Accessory secretory system protein Asp1 GO:0015031 CFE88_RS01860 e3269a3ab80215474ca849b0ce289ed6 184 SUPERFAMILY SSF53098 4 170 5.87E-43 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS01860 e3269a3ab80215474ca849b0ce289ed6 184 Gene3D G3DSA:3.30.420.10 1 170 2.8E-36 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS01860 e3269a3ab80215474ca849b0ce289ed6 184 Pfam PF00929 Exonuclease 7 158 4.6E-26 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS01860 e3269a3ab80215474ca849b0ce289ed6 184 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 165 1.1E-21 T 29-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CFE88_RS01860 e3269a3ab80215474ca849b0ce289ed6 184 SMART SM00479 5 168 6.0E-27 T 29-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CFE88_RS01350 f25674a024fb857bb6126c3e0de9025b 403 Pfam PF01098 Cell cycle protein 18 387 6.3E-95 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 CFE88_RS05505 cfac17aa5ce954510d73a45315cb2f75 222 SUPERFAMILY SSF51419 1 221 1.83E-71 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS05505 cfac17aa5ce954510d73a45315cb2f75 222 Pfam PF01168 Alanine racemase, N-terminal domain 19 221 6.2E-19 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS05505 cfac17aa5ce954510d73a45315cb2f75 222 Gene3D G3DSA:3.20.20.10 1 222 1.4E-49 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS05505 cfac17aa5ce954510d73a45315cb2f75 222 PIRSF PIRSF004848 1 222 1.9E-63 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein CFE88_RS05505 cfac17aa5ce954510d73a45315cb2f75 222 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 2 222 3.0E-49 T 29-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein CFE88_RS06500 1f8c0d135dfda9ed64bebb74eeb7db50 185 Pfam PF08887 GAD-like domain 9 81 6.8E-10 T 29-03-2018 IPR014983 GAD-related CFE88_RS06500 1f8c0d135dfda9ed64bebb74eeb7db50 185 Pfam PF08906 Domain of unknown function (DUF1851) 117 179 2.6E-17 T 29-03-2018 IPR015002 Domain of unknown function DUF1851 CFE88_RS09220 93ef07d4d2a9dc7fa4de67dc93f85262 213 Pfam PF16560 Putative mobile pathogenicity island 1 213 9.6E-137 T 29-03-2018 IPR032351 Putative mobile pathogenicity island CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 29-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 Gene3D G3DSA:3.30.70.100 1 69 2.5E-21 T 29-03-2018 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 PRINTS PR00944 Copper ion binding protein signature 54 67 2.3E-5 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 PRINTS PR00944 Copper ion binding protein signature 15 28 2.3E-5 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 PRINTS PR00944 Copper ion binding protein signature 3 15 2.3E-5 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 PRINTS PR00944 Copper ion binding protein signature 28 41 2.3E-5 T 29-03-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 Pfam PF00403 Heavy-metal-associated domain 5 66 1.2E-18 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 6 67 1.1E-20 T 29-03-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CFE88_RS12650 8297ee2a0b605822bdbb1ca344d8b793 69 SUPERFAMILY SSF55008 5 68 9.16E-21 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 Gene3D G3DSA:3.30.160.110 118 143 2.5E-7 T 29-03-2018 CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 3 182 7.6E-27 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 SUPERFAMILY SSF75615 106 199 8.76E-21 T 29-03-2018 CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 SUPERFAMILY SSF51735 3 95 9.64E-18 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 Gene3D G3DSA:3.40.50.720 2 117 3.1E-20 T 29-03-2018 CFE88_RS11230 8ad6eafa0aa272b405aecd61467f0e87 203 Pfam PF13241 Putative NAD(P)-binding 5 112 1.2E-23 T 29-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 CFE88_RS12155 88f48573834ac5a557fd2198b9be044e 156 Gene3D G3DSA:3.30.530.20 1 156 8.0E-22 T 29-03-2018 IPR023393 START-like domain CFE88_RS12155 88f48573834ac5a557fd2198b9be044e 156 SUPERFAMILY SSF55961 5 155 8.89E-36 T 29-03-2018 CFE88_RS12155 88f48573834ac5a557fd2198b9be044e 156 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 18 153 1.5E-23 T 29-03-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 Gene3D G3DSA:3.20.20.70 1 253 1.6E-100 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 242 1.3E-56 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 29-03-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 SUPERFAMILY SSF51351 1 250 1.07E-91 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 252 40.758 T 29-03-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS07285 3e400e990db7bce75875db05e33a0f7c 253 Pfam PF00121 Triosephosphate isomerase 5 248 1.2E-93 T 29-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CFE88_RS08485 2fe0aaf7acaacaeedf30828556dfffc5 564 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 206 559 2.0E-90 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS08485 2fe0aaf7acaacaeedf30828556dfffc5 564 SUPERFAMILY SSF53756 327 559 1.26E-14 T 29-03-2018 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 4 212 3.3E-91 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 SMART SM01133 2 213 2.5E-102 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 1 215 37.751 T 29-03-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 PIRSF PIRSF001357 2 219 6.8E-79 T 29-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 Pfam PF01791 DeoC/LacD family aldolase 6 208 2.9E-21 T 29-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 Gene3D G3DSA:3.20.20.70 2 216 2.2E-97 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS01085 03e6b17c12bc23cc4ab3d61e88b1bb04 220 SUPERFAMILY SSF51569 2 214 7.54E-84 T 29-03-2018 CFE88_RS10340 ad5790836561b727ae2d4c8e3dc83106 249 SUPERFAMILY SSF52540 1 235 2.66E-59 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10340 ad5790836561b727ae2d4c8e3dc83106 249 Gene3D G3DSA:3.40.50.300 1 248 2.2E-59 T 29-03-2018 CFE88_RS10340 ad5790836561b727ae2d4c8e3dc83106 249 Pfam PF00005 ABC transporter 26 171 6.9E-31 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10340 ad5790836561b727ae2d4c8e3dc83106 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS10340 ad5790836561b727ae2d4c8e3dc83106 249 SMART SM00382 34 221 8.7E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05375 d34aa80b74716786ebfb6f25dc066bee 67 Pfam PF05154 TM2 domain 2 50 1.8E-15 T 29-03-2018 IPR007829 TM2 domain CFE88_RS02645 cb06962e07845522e0eea3fa7b5b9b89 163 Pfam PF06103 Bacterial protein of unknown function (DUF948) 7 94 3.0E-29 T 29-03-2018 IPR009293 Uncharacterised protein family UPF0478 CFE88_RS02645 cb06962e07845522e0eea3fa7b5b9b89 163 Gene3D G3DSA:3.90.20.10 25 155 1.4E-9 T 29-03-2018 CFE88_RS02645 cb06962e07845522e0eea3fa7b5b9b89 163 SUPERFAMILY SSF58104 39 144 5.1E-6 T 29-03-2018 CFE88_RS04795 b458c6ef1c8d01fc80e2e0ef52df248f 450 Pfam PF15542 Bacterial toxin 50 346 446 2.1E-21 T 29-03-2018 IPR029100 Bacterial toxin 50 CFE88_RS04795 b458c6ef1c8d01fc80e2e0ef52df248f 450 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 189 297 5.4E-33 T 29-03-2018 IPR006528 Phage head morphogenesis domain CFE88_RS04795 b458c6ef1c8d01fc80e2e0ef52df248f 450 Pfam PF04233 Phage Mu protein F like protein 187 294 1.7E-15 T 29-03-2018 IPR006528 Phage head morphogenesis domain CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 Gene3D G3DSA:3.30.70.360 204 284 2.8E-6 T 29-03-2018 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 SUPERFAMILY SSF53187 384 466 1.23E-60 T 29-03-2018 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 SUPERFAMILY SSF53187 5 183 1.23E-60 T 29-03-2018 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 11 462 8.2E-184 T 29-03-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 Gene3D G3DSA:3.40.630.10 2 189 2.3E-24 T 29-03-2018 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 Gene3D G3DSA:3.30.70.360 285 373 1.2E-23 T 29-03-2018 CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 SUPERFAMILY SSF55031 183 379 2.86E-51 T 29-03-2018 IPR011650 Peptidase M20, dimerisation domain CFE88_RS02590 1e8e22523774e16f0e56843230c5d811 469 Pfam PF01546 Peptidase family M20/M25/M40 83 463 4.5E-28 T 29-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 CFE88_RS05880 7fcefba9d096da4ab4d800ddf12b9f2a 208 SUPERFAMILY SSF140423 21 204 2.75E-49 T 29-03-2018 IPR019454 Putative cell-wall binding lipoprotein YkyA-like CFE88_RS05880 7fcefba9d096da4ab4d800ddf12b9f2a 208 Gene3D G3DSA:1.20.120.570 10 208 3.6E-44 T 29-03-2018 CFE88_RS05880 7fcefba9d096da4ab4d800ddf12b9f2a 208 Pfam PF10368 Putative cell-wall binding lipoprotein 12 206 4.9E-53 T 29-03-2018 IPR019454 Putative cell-wall binding lipoprotein YkyA-like CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Gene3D G3DSA:3.30.465.10 95 221 1.3E-34 T 29-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 310 92.844 T 29-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Gene3D G3DSA:3.30.43.10 20 91 4.0E-19 T 29-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 SUPERFAMILY SSF56176 9 200 1.51E-44 T 29-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Gene3D G3DSA:3.90.78.10 222 309 4.6E-27 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 SUPERFAMILY SSF56194 202 307 3.53E-38 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 29 305 1.6E-71 T 29-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Pfam PF01565 FAD binding domain 42 170 1.1E-26 T 29-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CFE88_RS07495 772855b96f1c73ceb58d508c9e83f9d2 310 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 205 304 1.2E-29 T 29-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CFE88_RS03810 d14d0a2cc7137b65f04f6ef490a47bde 179 PIRSF PIRSF037778 1 179 3.8E-47 T 29-03-2018 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 CFE88_RS03810 d14d0a2cc7137b65f04f6ef490a47bde 179 Pfam PF12822 ECF transporter, substrate-specific component 5 170 2.4E-26 T 29-03-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 CFE88_RS04325 fb6fb006a2697b3d0645b0b11b585165 284 Gene3D G3DSA:1.10.3720.10 9 258 7.3E-40 T 29-03-2018 CFE88_RS04325 fb6fb006a2697b3d0645b0b11b585165 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 264 8.6E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS04325 fb6fb006a2697b3d0645b0b11b585165 284 SUPERFAMILY SSF161098 64 251 2.62E-26 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10205 213896fba5064e7156885499e3529bad 377 SUPERFAMILY SSF53383 4 369 2.5E-77 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS10205 213896fba5064e7156885499e3529bad 377 Gene3D G3DSA:3.90.1150.10 274 370 3.4E-14 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS10205 213896fba5064e7156885499e3529bad 377 Gene3D G3DSA:3.40.640.10 1 273 1.0E-31 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS10205 213896fba5064e7156885499e3529bad 377 Pfam PF00155 Aminotransferase class I and II 37 363 1.8E-38 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CFE88_RS04855 ba7bb17d78673ce4240e92bdf6c66a67 255 Gene3D G3DSA:3.40.50.300 3 231 3.6E-4 T 29-03-2018 CFE88_RS04855 ba7bb17d78673ce4240e92bdf6c66a67 255 Pfam PF13479 AAA domain 25 227 1.4E-29 T 29-03-2018 CFE88_RS10830 0cf44ecee5dc9c98c002105c54655550 65 Pfam PF05480 Staphylococcus haemolytic protein 22 64 5.0E-19 T 29-03-2018 IPR008846 Staphylococcal hemolytic protein family GO:0009405 CFE88_RS05950 fd59dd418e2f5d55f1b3820e8dc1a2d0 430 SUPERFAMILY SSF81665 334 426 7.59E-6 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS05950 fd59dd418e2f5d55f1b3820e8dc1a2d0 430 SUPERFAMILY SSF81665 105 163 7.59E-6 T 29-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 CFE88_RS00315 706f3436c4404e23f25d0917ea0b1400 229 Pfam PF08279 HTH domain 6 61 3.2E-15 T 29-03-2018 IPR013196 Helix-turn-helix, type 11 CFE88_RS00315 706f3436c4404e23f25d0917ea0b1400 229 Gene3D G3DSA:1.10.10.10 1 65 6.5E-16 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00315 706f3436c4404e23f25d0917ea0b1400 229 SMART SM00420 6 62 4.3E-6 T 29-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CFE88_RS00315 706f3436c4404e23f25d0917ea0b1400 229 SUPERFAMILY SSF46785 9 158 3.98E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00315 706f3436c4404e23f25d0917ea0b1400 229 SUPERFAMILY SSF46785 3 62 8.97E-12 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS12490 9e56479bdbd91d3decd2df6f71923465 655 Gene3D G3DSA:3.40.50.300 165 592 2.8E-14 T 29-03-2018 CFE88_RS12490 9e56479bdbd91d3decd2df6f71923465 655 Pfam PF01580 FtsK/SpoIIIE family 354 553 7.4E-6 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS12490 9e56479bdbd91d3decd2df6f71923465 655 SUPERFAMILY SSF52540 346 605 4.65E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS12505 9e56479bdbd91d3decd2df6f71923465 655 Gene3D G3DSA:3.40.50.300 165 592 2.8E-14 T 29-03-2018 CFE88_RS12505 9e56479bdbd91d3decd2df6f71923465 655 Pfam PF01580 FtsK/SpoIIIE family 354 553 7.4E-6 T 29-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CFE88_RS12505 9e56479bdbd91d3decd2df6f71923465 655 SUPERFAMILY SSF52540 346 605 4.65E-16 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08015 94984e2711c6775d977bdf12af5fbb31 363 Gene3D G3DSA:3.40.50.2000 195 336 1.1E-6 T 29-03-2018 CFE88_RS08015 94984e2711c6775d977bdf12af5fbb31 363 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 76 358 1.6E-38 T 29-03-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 CFE88_RS08015 94984e2711c6775d977bdf12af5fbb31 363 SUPERFAMILY SSF53756 41 360 1.26E-17 T 29-03-2018 CFE88_RS09325 e325e0ad43dbadddd368cb7664c7a9a4 300 Gene3D G3DSA:1.20.1330.10 10 149 3.3E-4 T 29-03-2018 CFE88_RS10375 acb808049224e9be97ebed830bec6bdf 300 Pfam PF05853 beta-keto acid cleavage enzyme 6 291 4.4E-95 T 29-03-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247|KEGG: 00600+2.3.1.24 CFE88_RS10375 acb808049224e9be97ebed830bec6bdf 300 Gene3D G3DSA:3.20.20.70 1 297 1.4E-101 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 112 191 4.0E-8 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 Gene3D G3DSA:3.40.50.1000 1 231 1.4E-31 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 192 1.8E-25 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 SUPERFAMILY SSF56784 2 228 9.76E-41 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 160 180 4.0E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 111 124 4.0E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 4.0E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS08480 dfeb31205b75b46e6ace54a63fd04ab0 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 4.0E-7 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 PIRSF PIRSF006621 1 326 5.8E-85 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 Gene3D G3DSA:1.10.1200.80 250 326 4.3E-13 T 29-03-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 SUPERFAMILY SSF51395 13 319 1.63E-60 T 29-03-2018 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 Pfam PF01207 Dihydrouridine synthase (Dus) 15 316 1.3E-48 T 29-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 99 117 - T 29-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CFE88_RS10085 1b9d847d6527c922afe992e186d35233 326 Gene3D G3DSA:3.20.20.70 11 249 2.5E-33 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS09905 14d4d82f407ae4ad96348cbb6b2c9046 123 Gene3D G3DSA:3.40.50.1820 2 117 8.4E-7 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 Pfam PF00271 Helicase conserved C-terminal domain 213 319 2.6E-9 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 Gene3D G3DSA:3.40.50.300 10 184 1.6E-22 T 29-03-2018 CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 Pfam PF04851 Type III restriction enzyme, res subunit 25 174 2.9E-10 T 29-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 SMART SM00487 23 202 9.0E-16 T 29-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 SUPERFAMILY SSF52540 38 330 1.05E-38 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 Gene3D G3DSA:3.40.50.300 201 356 8.0E-18 T 29-03-2018 CFE88_RS07435 a496a6e321946d41a76713fe4df4a737 360 SMART SM00490 238 320 2.2E-9 T 29-03-2018 IPR001650 Helicase, C-terminal CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 524 9.9E-17 T 29-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 SUPERFAMILY SSF52518 353 534 2.86E-45 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 SUPERFAMILY SSF52518 4 180 1.3E-42 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 SUPERFAMILY SSF52467 165 340 3.97E-31 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Gene3D G3DSA:3.40.50.970 333 540 7.1E-36 T 29-03-2018 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 PIRSF PIRSF036565 1 548 8.2E-205 T 29-03-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 414 433 - T 29-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 312 3.4E-22 T 29-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Gene3D G3DSA:3.40.50.1220 194 332 5.7E-22 T 29-03-2018 IPR029035 DHS-like NAD/FAD-binding domain CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 175 3.7E-35 T 29-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CFE88_RS10905 b96c243b84ea829a1aaf2d015ce78c17 549 Gene3D G3DSA:3.40.50.970 1 193 3.4E-48 T 29-03-2018 CFE88_RS00915 ebb3670d818023f0f46e9b39bfd8f4ac 169 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 140 5.6E-30 T 29-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS04080 8c7d35eddf8fa2afd9c32e3719ee3f4e 282 Gene3D G3DSA:3.30.1180.10 152 282 1.3E-30 T 29-03-2018 CFE88_RS04080 8c7d35eddf8fa2afd9c32e3719ee3f4e 282 Pfam PF02645 Uncharacterised protein, DegV family COG1307 6 277 1.1E-82 T 29-03-2018 IPR003797 DegV CFE88_RS04080 8c7d35eddf8fa2afd9c32e3719ee3f4e 282 SUPERFAMILY SSF82549 3 279 2.88E-87 T 29-03-2018 CFE88_RS04080 8c7d35eddf8fa2afd9c32e3719ee3f4e 282 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 6 276 1.1E-95 T 29-03-2018 IPR003797 DegV CFE88_RS04080 8c7d35eddf8fa2afd9c32e3719ee3f4e 282 Gene3D G3DSA:3.40.50.10170 1 151 2.8E-52 T 29-03-2018 CFE88_RS10525 cdf28792c161d093cea0c8ee671a9270 167 Pfam PF08877 MepB protein 28 149 4.6E-46 T 29-03-2018 IPR011235 MepB-like CFE88_RS10525 cdf28792c161d093cea0c8ee671a9270 167 PIRSF PIRSF032285 1 166 2.9E-66 T 29-03-2018 IPR011235 MepB-like CFE88_RS04095 bf8e91e6f9969079644e46ca439d635a 166 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 17 141 3.4E-53 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS04095 bf8e91e6f9969079644e46ca439d635a 166 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 18 138 1.6E-46 T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS04095 bf8e91e6f9969079644e46ca439d635a 166 Gene3D G3DSA:2.70.70.10 5 165 4.8E-61 T 29-03-2018 CFE88_RS04095 bf8e91e6f9969079644e46ca439d635a 166 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 80 92 - T 29-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CFE88_RS04095 bf8e91e6f9969079644e46ca439d635a 166 SUPERFAMILY SSF51261 9 160 6.98E-55 T 29-03-2018 IPR011055 Duplicated hybrid motif CFE88_RS08625 3cd339f2ccdd73ce3c6a00227c0b1092 132 Gene3D G3DSA:1.10.1520.10 2 132 1.2E-18 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS08625 3cd339f2ccdd73ce3c6a00227c0b1092 132 PIRSF PIRSF005520 1 132 7.0E-50 T 29-03-2018 IPR008226 Mini-ribonuclease 3 family CFE88_RS08625 3cd339f2ccdd73ce3c6a00227c0b1092 132 SUPERFAMILY SSF69065 6 127 2.62E-39 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS08625 3cd339f2ccdd73ce3c6a00227c0b1092 132 Pfam PF00636 Ribonuclease III domain 14 113 6.7E-15 T 29-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 CFE88_RS08625 3cd339f2ccdd73ce3c6a00227c0b1092 132 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 4 130 27.656 T 29-03-2018 IPR008226 Mini-ribonuclease 3 family CFE88_RS10655 eca6003e9e63bbe205f0cd644341eaf9 234 Gene3D G3DSA:3.20.20.70 2 232 1.6E-35 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS10655 eca6003e9e63bbe205f0cd644341eaf9 234 SUPERFAMILY SSF51366 4 230 1.14E-49 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS10655 eca6003e9e63bbe205f0cd644341eaf9 234 Pfam PF00977 Histidine biosynthesis protein 4 228 3.1E-59 T 29-03-2018 IPR006062 Histidine biosynthesis GO:0000105 CFE88_RS10655 eca6003e9e63bbe205f0cd644341eaf9 234 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 3 232 25.978 T 29-03-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CFE88_RS01610 708fb8bf1b04281e7bf41d68e45cda53 264 SUPERFAMILY SSF56317 2 263 1.96E-62 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CFE88_RS01610 708fb8bf1b04281e7bf41d68e45cda53 264 Pfam PF00795 Carbon-nitrogen hydrolase 14 249 1.4E-40 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CFE88_RS01610 708fb8bf1b04281e7bf41d68e45cda53 264 Gene3D G3DSA:3.60.110.10 2 264 1.3E-69 T 29-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 CFE88_RS07260 3ceb694287c3ded01181461d8d8784aa 246 Pfam PF12146 Serine aminopeptidase, S33 150 226 5.7E-8 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS07260 3ceb694287c3ded01181461d8d8784aa 246 Pfam PF12146 Serine aminopeptidase, S33 15 121 5.1E-9 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS07260 3ceb694287c3ded01181461d8d8784aa 246 Gene3D G3DSA:3.40.50.1820 1 244 4.8E-38 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07260 3ceb694287c3ded01181461d8d8784aa 246 SUPERFAMILY SSF53474 13 243 7.41E-34 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07260 3ceb694287c3ded01181461d8d8784aa 246 PIRSF PIRSF017388 1 244 1.7E-90 T 29-03-2018 IPR012354 Esterase/lipase GO:0052689 CFE88_RS06585 92b0359252f20030bce765715234fdeb 240 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 230 7.9E-48 T 29-03-2018 IPR008681 Negative regulator of genetic competence, MecA CFE88_RS06585 92b0359252f20030bce765715234fdeb 240 Hamap MF_01124 Adapter protein MecA [mecA]. 1 235 25.242 T 29-03-2018 IPR008681 Negative regulator of genetic competence, MecA CFE88_RS06585 92b0359252f20030bce765715234fdeb 240 PIRSF PIRSF029008 1 237 9.9E-74 T 29-03-2018 IPR008681 Negative regulator of genetic competence, MecA CFE88_RS12720 107b30bac4f977dfdefac593b1b0baaf 281 Pfam PF01446 Replication protein 57 230 7.0E-27 T 29-03-2018 IPR000989 Replication protein GO:0003677|GO:0005727|GO:0006260 CFE88_RS04630 0dbe1d541e87bd97e88af6d4727639f8 243 PIRSF PIRSF006648 2 241 6.9E-24 T 29-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 CFE88_RS04630 0dbe1d541e87bd97e88af6d4727639f8 243 Pfam PF01061 ABC-2 type transporter 4 199 2.8E-16 T 29-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CFE88_RS11180 c05dd56ad788fbf1013761f88c46aa03 441 Gene3D G3DSA:2.20.28.20 40 68 2.1E-5 T 29-03-2018 CFE88_RS11180 c05dd56ad788fbf1013761f88c46aa03 441 Gene3D G3DSA:2.20.28.20 2 29 0.0035 T 29-03-2018 CFE88_RS11180 c05dd56ad788fbf1013761f88c46aa03 441 Pfam PF13367 Protease prsW family 232 418 3.6E-21 T 29-03-2018 IPR026898 Protease PrsW GO:0008233 CFE88_RS11180 c05dd56ad788fbf1013761f88c46aa03 441 Pfam PF12773 Double zinc ribbon 3 61 4.1E-10 T 29-03-2018 IPR025874 Double zinc ribbon CFE88_RS03595 1e607211216a8f457a58055415fdddaf 128 Gene3D G3DSA:3.40.250.10 27 128 2.2E-26 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS03595 1e607211216a8f457a58055415fdddaf 128 Pfam PF00581 Rhodanese-like domain 36 121 3.9E-17 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS03595 1e607211216a8f457a58055415fdddaf 128 SUPERFAMILY SSF52821 12 121 9.04E-30 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS03595 1e607211216a8f457a58055415fdddaf 128 SMART SM00450 31 126 1.4E-24 T 29-03-2018 IPR001763 Rhodanese-like domain CFE88_RS10455 d00a6b5744c0a8efe5a1fbccbc2c8aa0 320 SUPERFAMILY SSF82549 1 319 1.07E-113 T 29-03-2018 CFE88_RS10455 d00a6b5744c0a8efe5a1fbccbc2c8aa0 320 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 319 5.6E-134 T 29-03-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 CFE88_RS10455 d00a6b5744c0a8efe5a1fbccbc2c8aa0 320 Pfam PF02733 Dak1 domain 18 317 5.6E-115 T 29-03-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 CFE88_RS10455 d00a6b5744c0a8efe5a1fbccbc2c8aa0 320 Gene3D G3DSA:3.30.1180.20 179 320 1.0E-41 T 29-03-2018 CFE88_RS10455 d00a6b5744c0a8efe5a1fbccbc2c8aa0 320 Gene3D G3DSA:3.40.50.10440 11 177 1.3E-66 T 29-03-2018 CFE88_RS07215 7d00373a9855e7b3641727c02fb0130f 289 Pfam PF08708 Primase C terminal 1 (PriCT-1) 225 287 2.4E-13 T 29-03-2018 IPR014820 Primase, C-terminal 1 CFE88_RS07215 7d00373a9855e7b3641727c02fb0130f 289 SMART SM00942 225 289 3.2E-23 T 29-03-2018 IPR014820 Primase, C-terminal 1 CFE88_RS07195 43988d417ad9fcc2544e5be4546c2c19 213 Pfam PF16560 Putative mobile pathogenicity island 1 213 2.2E-124 T 29-03-2018 IPR032351 Putative mobile pathogenicity island CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Pfam PF13558 Putative exonuclease SbcCD, C subunit 904 966 3.4E-13 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 SUPERFAMILY SSF52540 901 993 8.05E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 SUPERFAMILY SSF52540 6 238 8.05E-21 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Gene3D G3DSA:1.10.287.510 460 602 5.4E-6 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Gene3D G3DSA:1.10.287.510 320 458 0.066 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Gene3D G3DSA:3.40.50.300 731 1007 8.5E-15 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Pfam PF13476 AAA domain 6 212 7.1E-26 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 Gene3D G3DSA:3.40.50.300 4 190 1.0E-21 T 29-03-2018 CFE88_RS04490 0bbb61c392057a7aabe1482722def34b 1009 SUPERFAMILY SSF75712 474 569 1.1E-7 T 29-03-2018 CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 245 465 1.4E-83 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 4 212 7.8E-27 T 29-03-2018 IPR022488 Polyphosphate kinase-2-related CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 SUPERFAMILY SSF52540 26 215 2.51E-9 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 SUPERFAMILY SSF52540 274 465 1.65E-27 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 Gene3D G3DSA:3.40.50.300 2 233 4.3E-43 T 29-03-2018 CFE88_RS11445 5fbe32d1d6a68a8301f6f1d61d8ec7b4 474 Gene3D G3DSA:3.40.50.300 234 469 6.4E-88 T 29-03-2018 CFE88_RS11065 aff210f08b2892f378ddd13f31735042 164 SUPERFAMILY SSF160424 3 162 3.4E-58 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11065 aff210f08b2892f378ddd13f31735042 164 Pfam PF04634 Protein of unknown function, DUF600 7 151 2.1E-47 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11065 aff210f08b2892f378ddd13f31735042 164 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 1 157 4.1E-68 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11065 aff210f08b2892f378ddd13f31735042 164 Gene3D G3DSA:3.30.500.20 4 116 2.6E-38 T 29-03-2018 CFE88_RS04860 ee8b52005c5106b404c1b8af87b69a5b 179 SUPERFAMILY SSF161266 19 177 4.05E-28 T 29-03-2018 CFE88_RS04860 ee8b52005c5106b404c1b8af87b69a5b 179 Pfam PF07352 Bacteriophage Mu Gam like protein 25 177 1.4E-32 T 29-03-2018 IPR009951 Host-nuclease inhibitor protein Gam GO:0003690|GO:0042262 CFE88_RS03185 52adfd64324463f193d8df1fa7106dc1 86 Hamap MF_01507 UPF0297 protein . 1 84 25.107 T 29-03-2018 IPR009309 Uncharacterised protein family UPF0297 CFE88_RS03185 52adfd64324463f193d8df1fa7106dc1 86 PIRSF PIRSF037258 1 86 8.2E-41 T 29-03-2018 IPR009309 Uncharacterised protein family UPF0297 CFE88_RS03185 52adfd64324463f193d8df1fa7106dc1 86 Pfam PF06135 Bacterial protein of unknown function (DUF965) 5 82 1.1E-33 T 29-03-2018 IPR009309 Uncharacterised protein family UPF0297 CFE88_RS09340 4583a3f4196ceca848b1776117611bbb 254 PIRSF PIRSF005426 5 254 2.8E-86 T 29-03-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 CFE88_RS09340 4583a3f4196ceca848b1776117611bbb 254 SUPERFAMILY SSF55469 8 253 2.09E-64 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS09340 4583a3f4196ceca848b1776117611bbb 254 Gene3D G3DSA:3.40.109.10 7 253 8.3E-52 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS09340 4583a3f4196ceca848b1776117611bbb 254 Pfam PF00881 Nitroreductase family 13 167 4.7E-17 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CFE88_RS04115 49757154853b9c215f159f25a25f1603 167 Gene3D G3DSA:3.40.630.30 1 167 1.1E-26 T 29-03-2018 CFE88_RS04115 49757154853b9c215f159f25a25f1603 167 Pfam PF00583 Acetyltransferase (GNAT) family 27 141 7.2E-11 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS04115 49757154853b9c215f159f25a25f1603 167 SUPERFAMILY SSF55729 1 166 3.24E-24 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 153 3.9E-44 T 29-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 58 65 - T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 SUPERFAMILY SSF53671 9 335 2.75E-98 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 13 334 2.8E-124 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 332 3.8E-56 T 29-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 58 77 1.5E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 299 322 1.5E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 279 1.5E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 140 151 1.5E-23 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 129 143 5.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 313 324 5.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 89 102 5.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 56 70 5.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 233 243 5.9E-30 T 29-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 Gene3D G3DSA:3.40.50.1370 153 321 3.5E-52 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 Gene3D G3DSA:3.40.50.1370 2 152 3.4E-52 T 29-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CFE88_RS10875 b669b941b47fd39dd6ec77c95b4d1612 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 12 335 79.5 T 29-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 SUPERFAMILY SSF52540 175 332 4.72E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 SUPERFAMILY SSF52540 99 148 4.72E-15 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 Gene3D G3DSA:3.40.50.300 185 377 1.4E-18 T 29-03-2018 CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 SUPERFAMILY SSF82771 36 120 2.09E-5 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 205 559 1.5E-99 T 29-03-2018 IPR018647 Domain of unknown function DUF2075 CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 Pfam PF01541 GIY-YIG catalytic domain 38 110 4.4E-5 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09885 a4bf3741fccbf6601947951f877f404e 576 Gene3D G3DSA:3.40.1440.10 23 184 1.5E-7 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 29-03-2018 IPR020081 SsrA-binding protein, conserved site CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 Pfam PF01668 SmpB protein 13 153 1.1E-60 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 SUPERFAMILY SSF74982 5 135 1.7E-51 T 29-03-2018 IPR023620 Small protein B CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 Hamap MF_00023 SsrA-binding protein [smpB]. 1 156 70.828 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 153 4.2E-58 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 Gene3D G3DSA:2.40.280.10 12 130 1.8E-50 T 29-03-2018 IPR023620 Small protein B CFE88_RS07250 f4f907d677ba7bb05dc8bd17d236f0ae 156 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 13 135 2.0E-67 T 29-03-2018 IPR000037 SsrA-binding protein GO:0003723 CFE88_RS05495 3d0407bcb3e28ffdc80d92dfe1a076b0 96 Pfam PF02325 YGGT family 15 82 2.9E-18 T 29-03-2018 IPR003425 CCB3/YggT GO:0016020 CFE88_RS04655 3f42dd3596804d82bd0b0b5703468dac 227 Pfam PF07553 Host cell surface-exposed lipoprotein 129 175 7.1E-18 T 29-03-2018 IPR011434 Domain of unknown function DUF1535 CFE88_RS04655 3f42dd3596804d82bd0b0b5703468dac 227 Pfam PF07553 Host cell surface-exposed lipoprotein 178 225 1.2E-21 T 29-03-2018 IPR011434 Domain of unknown function DUF1535 CFE88_RS03515 72595e979590f45b8c7f4eb1c5ba4334 66 SUPERFAMILY SSF158379 5 65 1.31E-20 T 29-03-2018 IPR023164 YqgQ-like domain CFE88_RS03515 72595e979590f45b8c7f4eb1c5ba4334 66 Pfam PF06014 Bacterial protein of unknown function (DUF910) 5 64 2.0E-23 T 29-03-2018 IPR009256 Protein of unknown function DUF910 CFE88_RS03515 72595e979590f45b8c7f4eb1c5ba4334 66 Gene3D G3DSA:1.10.287.760 5 66 5.5E-23 T 29-03-2018 IPR023164 YqgQ-like domain CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 Gene3D G3DSA:1.20.1250.20 13 204 6.2E-10 T 29-03-2018 CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 SUPERFAMILY SSF103473 459 482 3.79E-17 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 SUPERFAMILY SSF103473 17 201 3.79E-17 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 SUPERFAMILY SSF103473 255 427 3.79E-17 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 Gene3D G3DSA:1.20.1250.20 259 488 8.5E-4 T 29-03-2018 CFE88_RS10470 9004a96f875a7443ad46447aabfbeab6 493 Pfam PF07690 Major Facilitator Superfamily 30 412 8.4E-11 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS07825 1def35d3a588ed5170e81bdd5bf80a33 154 SMART SM00871 1 151 2.9E-15 T 29-03-2018 IPR010499 Bacterial transcription activator, effector binding CFE88_RS07825 1def35d3a588ed5170e81bdd5bf80a33 154 SUPERFAMILY SSF55136 1 150 2.44E-22 T 29-03-2018 CFE88_RS07825 1def35d3a588ed5170e81bdd5bf80a33 154 Gene3D G3DSA:3.20.80.10 1 151 2.0E-18 T 29-03-2018 IPR011256 Regulatory factor, effector binding domain CFE88_RS07825 1def35d3a588ed5170e81bdd5bf80a33 154 Pfam PF06445 GyrI-like small molecule binding domain 1 150 2.4E-13 T 29-03-2018 IPR029442 GyrI-like small molecule binding domain CFE88_RS05265 7a4638d446173be8280af07f3182dabc 110 Hamap MF_00245 UPF0122 protein . 6 103 21.49 T 29-03-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CFE88_RS05265 7a4638d446173be8280af07f3182dabc 110 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 7 103 3.0E-39 T 29-03-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CFE88_RS05265 7a4638d446173be8280af07f3182dabc 110 SUPERFAMILY SSF88659 5 107 2.62E-30 T 29-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CFE88_RS05265 7a4638d446173be8280af07f3182dabc 110 Gene3D G3DSA:1.10.10.10 1 110 3.1E-29 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS02495 0fe3f273de9f19883bd319bc0e05f4bf 283 Gene3D G3DSA:1.10.530.10 123 265 1.0E-24 T 29-03-2018 CFE88_RS02495 0fe3f273de9f19883bd319bc0e05f4bf 283 SMART SM00047 113 271 7.2E-35 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS02495 0fe3f273de9f19883bd319bc0e05f4bf 283 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 133 260 1.9E-12 T 29-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 30 238 3.9E-88 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 5 239 42.188 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 PIRSF PIRSF000857 3 243 8.0E-92 T 29-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 44 215 1.2E-51 T 29-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 49 237 9.4E-74 T 29-03-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 SUPERFAMILY SSF52402 18 202 1.85E-53 T 29-03-2018 CFE88_RS11210 771d5042d6c29d9e6cab746b082d77d1 243 Gene3D G3DSA:3.40.50.620 17 243 1.0E-49 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS10610 3732c5d62114731c7cdb5b2feec73aa5 172 Gene3D G3DSA:3.40.630.30 1 162 4.0E-11 T 29-03-2018 CFE88_RS10610 3732c5d62114731c7cdb5b2feec73aa5 172 SUPERFAMILY SSF55729 1 155 2.41E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS10610 3732c5d62114731c7cdb5b2feec73aa5 172 Pfam PF13302 Acetyltransferase (GNAT) domain 6 146 6.9E-13 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS03245 b0dbdd52fdede8df090c940e710b4f10 252 SUPERFAMILY SSF88713 4 251 1.11E-98 T 29-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CFE88_RS03245 b0dbdd52fdede8df090c940e710b4f10 252 Gene3D G3DSA:3.20.20.370 4 251 1.1E-102 T 29-03-2018 CFE88_RS03245 b0dbdd52fdede8df090c940e710b4f10 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 3 247 44.277 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF CFE88_RS03245 b0dbdd52fdede8df090c940e710b4f10 252 Pfam PF03746 LamB/YcsF family 5 242 6.8E-100 T 29-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF CFE88_RS09310 827dbc60d786cb2547858ebe5b7b7d08 192 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 190 1.1E-93 T 29-03-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CFE88_RS09310 827dbc60d786cb2547858ebe5b7b7d08 192 SUPERFAMILY SSF53271 2 186 1.48E-38 T 29-03-2018 IPR029057 Phosphoribosyltransferase-like CFE88_RS09310 827dbc60d786cb2547858ebe5b7b7d08 192 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 39.103 T 29-03-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CFE88_RS09310 827dbc60d786cb2547858ebe5b7b7d08 192 Gene3D G3DSA:3.40.50.2020 3 188 7.8E-18 T 29-03-2018 CFE88_RS11070 395567f313292323aeb2639ad9cb88bd 176 Gene3D G3DSA:3.30.500.20 16 128 2.4E-36 T 29-03-2018 CFE88_RS11070 395567f313292323aeb2639ad9cb88bd 176 SUPERFAMILY SSF160424 15 175 4.05E-57 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11070 395567f313292323aeb2639ad9cb88bd 176 Pfam PF04634 Protein of unknown function, DUF600 19 163 1.6E-47 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS11070 395567f313292323aeb2639ad9cb88bd 176 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 15 169 5.9E-65 T 29-03-2018 IPR006728 Protein of unknown function DUF600 CFE88_RS09170 cd22bd5d0b0f8ddcc1c9ea5954dca0ef 205 Pfam PF03596 Cadmium resistance transporter 12 203 1.2E-91 T 29-03-2018 IPR004676 Cadmium resistance transporter CFE88_RS09170 cd22bd5d0b0f8ddcc1c9ea5954dca0ef 205 TIGRFAM TIGR00779 cad: cadmium resistance transporter family protein 12 205 5.7E-91 T 29-03-2018 IPR004676 Cadmium resistance transporter CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 129 6.6E-30 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 29-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 Gene3D G3DSA:3.40.50.10730 169 330 1.7E-26 T 29-03-2018 CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 Pfam PF00107 Zinc-binding dehydrogenase 178 304 9.3E-24 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 SUPERFAMILY SSF51735 140 297 8.47E-38 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 Gene3D G3DSA:3.90.180.10 1 168 2.4E-45 T 29-03-2018 CFE88_RS11590 f713d8a42cb29e57b0a6f918008746d0 350 SUPERFAMILY SSF50129 1 156 4.4E-53 T 29-03-2018 IPR011032 GroES-like CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 Pfam PF01047 MarR family 62 119 6.7E-16 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 SUPERFAMILY SSF46785 31 169 8.1E-32 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 111 8.9E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 131 8.9E-5 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 Gene3D G3DSA:1.10.10.10 29 172 3.6E-26 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11190 c6948c508a6ba0729556d94ecf8b77a9 172 SMART SM00347 55 155 4.1E-25 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF04650 YSIRK type signal peptide 5 29 2.6E-8 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF00746 LPXTG cell wall anchor motif 3648 3688 0.0011 T 29-03-2018 IPR019948 Gram-positive LPXTG cell wall anchor CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Gene3D G3DSA:3.40.50.2300 684 794 7.9E-4 T 29-03-2018 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1881 3372 2.0E-8 T 29-03-2018 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Gene3D G3DSA:1.20.1270.70 556 624 2.3E-5 T 29-03-2018 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3244 3316 5.1E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 779 850 3.5E-16 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 629 700 5.8E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2088 2162 1.0E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 702 777 1.7E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1703 1779 4.1E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1010 1085 1.8E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2935 3002 9.5E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3090 3164 9.1E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1087 1161 1.6E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2320 2394 2.0E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2858 2932 4.4E-16 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1241 1316 2.1E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2550 2625 1.3E-18 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2396 2471 9.2E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1780 1856 1.2E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1626 1701 1.7E-18 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1549 1624 6.7E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3013 3087 1.1E-10 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2011 2085 9.7E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3166 3241 4.5E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3397 3471 4.7E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1858 1933 1.2E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1395 1470 3.5E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1473 1547 3.3E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2242 2317 2.6E-18 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3321 3395 8.1E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1319 1394 2.5E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3549 3621 1.4E-7 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2165 2239 2.6E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 3474 3538 2.8E-14 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1934 2009 1.4E-18 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2473 2548 1.1E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2628 2703 4.4E-15 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 934 1008 9.7E-18 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 856 931 1.1E-16 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2704 2778 6.9E-13 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 2781 2855 1.5E-17 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 Pfam PF07564 Domain of Unknown Function (DUF1542) 1164 1239 3.3E-19 T 29-03-2018 IPR011439 Domain of unknown function DUF1542 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 5 39 1.4E-9 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 3654 3686 3.3E-4 T 29-03-2018 CFE88_RS02565 6333c2dd85f99ddf4c33adb73d9e8e0e 3692 TIGRFAM TIGR04263 SasC_Mrp_aggreg: SasC/Mrp/FmtB intercellular aggregation domain 189 568 3.8E-130 T 29-03-2018 IPR026359 SasC/Mrp/FmtB intercellular aggregation domain CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Gene3D G3DSA:1.20.1090.10 652 869 3.2E-60 T 29-03-2018 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Gene3D G3DSA:3.40.50.1970 440 651 1.1E-50 T 29-03-2018 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 640 668 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 SUPERFAMILY SSF53720 19 463 5.5E-83 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 PIRSF PIRSF000111 4 869 0.0 T 29-03-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Gene3D G3DSA:3.40.605.10 5 241 2.7E-30 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 SUPERFAMILY SSF56796 458 866 2.09E-117 T 29-03-2018 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 726 746 - T 29-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Pfam PF00171 Aldehyde dehydrogenase family 19 412 4.1E-27 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Gene3D G3DSA:3.40.309.10 242 415 1.1E-26 T 29-03-2018 CFE88_RS07565 ecd1a88d5518e5b878ba6bac504f8c24 869 Pfam PF00465 Iron-containing alcohol dehydrogenase 467 854 9.8E-114 T 29-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00691 Adhesin B signature 33 54 1.2E-11 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00691 Adhesin B signature 143 162 1.2E-11 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00691 Adhesin B signature 247 264 1.2E-11 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00691 Adhesin B signature 292 310 1.2E-11 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00691 Adhesin B signature 58 76 1.2E-11 T 29-03-2018 IPR006129 Adhesin B GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00690 Adhesin family signature 64 77 2.6E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00690 Adhesin family signature 77 94 2.6E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00690 Adhesin family signature 251 269 2.6E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00690 Adhesin family signature 33 51 2.6E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 PRINTS PR00690 Adhesin family signature 199 220 2.6E-9 T 29-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 Gene3D G3DSA:3.40.50.1980 195 314 5.0E-26 T 29-03-2018 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 Pfam PF01297 Zinc-uptake complex component A periplasmic 36 312 6.0E-58 T 29-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 SUPERFAMILY SSF53807 11 314 1.62E-70 T 29-03-2018 CFE88_RS11730 140f4f1f6291020654cc729d041735a5 315 Gene3D G3DSA:3.40.50.1980 33 194 4.4E-45 T 29-03-2018 CFE88_RS00520 5077666d589f30c9881711ff11959cf8 147 Pfam PF02391 MoaE protein 7 117 4.0E-36 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00520 5077666d589f30c9881711ff11959cf8 147 Gene3D G3DSA:3.90.1170.40 1 147 2.1E-48 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS00520 5077666d589f30c9881711ff11959cf8 147 SUPERFAMILY SSF54690 4 143 7.98E-46 T 29-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CFE88_RS05760 e5311f33c53787f1383c6acb64e6d9cc 303 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 17 297 5.9E-94 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CFE88_RS05760 e5311f33c53787f1383c6acb64e6d9cc 303 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 15 299 16.827 T 29-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CFE88_RS05760 e5311f33c53787f1383c6acb64e6d9cc 303 Pfam PF01040 UbiA prenyltransferase family 32 284 1.6E-55 T 29-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CFE88_RS11430 5e48066f0c1ac7429f2d00f84291063f 285 Gene3D G3DSA:3.90.1200.10 93 268 3.3E-17 T 29-03-2018 CFE88_RS11430 5e48066f0c1ac7429f2d00f84291063f 285 PIRSF PIRSF006221 1 285 1.5E-84 T 29-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 CFE88_RS11430 5e48066f0c1ac7429f2d00f84291063f 285 Pfam PF03881 Fructosamine kinase 13 284 3.5E-69 T 29-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 CFE88_RS11430 5e48066f0c1ac7429f2d00f84291063f 285 SUPERFAMILY SSF56112 12 280 5.39E-45 T 29-03-2018 IPR011009 Protein kinase-like domain CFE88_RS11430 5e48066f0c1ac7429f2d00f84291063f 285 Gene3D G3DSA:3.30.200.20 3 87 1.3E-16 T 29-03-2018 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 SUPERFAMILY SSF51556 60 358 7.49E-94 T 29-03-2018 IPR032466 Metal-dependent hydrolase CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 385 2.1E-110 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 Gene3D G3DSA:3.20.20.140 73 338 3.8E-99 T 29-03-2018 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 Gene3D G3DSA:2.30.40.10 1 72 1.1E-15 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 SUPERFAMILY SSF51338 358 387 1.0E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 SUPERFAMILY SSF51338 4 59 1.0E-19 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 Gene3D G3DSA:2.30.40.10 339 388 2.2E-8 T 29-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 Pfam PF01979 Amidohydrolase family 57 385 5.4E-23 T 29-03-2018 IPR006680 Amidohydrolase-related GO:0016787 CFE88_RS07705 1a874d8b916c69e3d1442c0016963d98 390 PIRSF PIRSF038994 2 389 4.5E-125 T 29-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CFE88_RS08605 69a3b91a9d5fa73978eb184b92b24362 47 Pfam PF00471 Ribosomal protein L33 2 47 3.2E-16 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08605 69a3b91a9d5fa73978eb184b92b24362 47 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 47 5.2E-13 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS08605 69a3b91a9d5fa73978eb184b92b24362 47 ProSitePatterns PS00582 Ribosomal protein L33 signature. 16 34 - T 29-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08605 69a3b91a9d5fa73978eb184b92b24362 47 SUPERFAMILY SSF57829 3 47 2.38E-13 T 29-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CFE88_RS08605 69a3b91a9d5fa73978eb184b92b24362 47 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 47 15.372 T 29-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS09550 00f90367bccd522dfed499c66f9c54dd 67 SUPERFAMILY SSF47413 2 66 1.02E-18 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS09550 00f90367bccd522dfed499c66f9c54dd 67 SMART SM00530 4 59 6.4E-15 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS09550 00f90367bccd522dfed499c66f9c54dd 67 Gene3D G3DSA:1.10.260.40 1 66 2.4E-18 T 29-03-2018 CFE88_RS09550 00f90367bccd522dfed499c66f9c54dd 67 Pfam PF01381 Helix-turn-helix 5 58 1.0E-16 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS06110 3a3d42ef474c152116a140f52233f6f8 160 SUPERFAMILY SSF143422 4 130 2.62E-46 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06110 3a3d42ef474c152116a140f52233f6f8 160 SMART SM01321 12 130 1.2E-39 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06110 3a3d42ef474c152116a140f52233f6f8 160 Gene3D G3DSA:3.30.70.1290 3 134 1.8E-23 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS06110 3a3d42ef474c152116a140f52233f6f8 160 Pfam PF01797 Transposase IS200 like 13 130 1.2E-37 T 29-03-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 SUPERFAMILY SSF55124 348 423 1.77E-17 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 21 561 1.8E-262 T 29-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 SUPERFAMILY SSF56014 430 561 1.83E-36 T 29-03-2018 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Gene3D G3DSA:3.30.413.10 142 348 9.5E-55 T 29-03-2018 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 SUPERFAMILY SSF55124 16 148 5.56E-30 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 PRINTS PR00397 Sirohaem Fe-binding site signature 432 450 1.1E-8 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 PRINTS PR00397 Sirohaem Fe-binding site signature 480 498 1.1E-8 T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Gene3D G3DSA:3.30.413.10 80 141 0.0021 T 29-03-2018 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 480 496 - T 29-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 357 419 7.1E-14 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 79 137 1.7E-15 T 29-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Gene3D G3DSA:3.30.413.10 428 565 1.5E-29 T 29-03-2018 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 432 560 9.1E-4 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 174 332 2.7E-50 T 29-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 SUPERFAMILY SSF56014 149 346 8.9E-61 T 29-03-2018 CFE88_RS11220 c5c638c1200fa915871176f656e14cc4 572 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 11 572 58.065 T 29-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CFE88_RS02620 9ed12b0f567c498b313b13c03b52d310 103 Pfam PF00085 Thioredoxin 10 100 8.2E-19 T 29-03-2018 IPR013766 Thioredoxin domain GO:0045454 CFE88_RS02620 9ed12b0f567c498b313b13c03b52d310 103 SUPERFAMILY SSF52833 1 102 1.42E-23 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS02620 9ed12b0f567c498b313b13c03b52d310 103 Gene3D G3DSA:3.40.30.10 1 103 7.9E-23 T 29-03-2018 CFE88_RS09365 b7232242ba7bbbf1d5b98503a47a6b92 207 Gene3D G3DSA:3.40.190.10 1 206 4.9E-4 T 29-03-2018 CFE88_RS09390 31959e0a911390d3c02c4300025d9680 221 PIRSF PIRSF006324 9 220 2.5E-49 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CFE88_RS09390 31959e0a911390d3c02c4300025d9680 221 Pfam PF01810 LysE type translocator 25 218 3.1E-36 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 204 228 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 173 194 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 129 152 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 3.1E-35 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 29-03-2018 IPR020583 Inositol monophosphatase, metal-binding site CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 Gene3D G3DSA:3.40.190.80 149 273 3.0E-28 T 29-03-2018 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 207 221 - T 29-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 SUPERFAMILY SSF56655 2 253 1.06E-72 T 29-03-2018 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 Gene3D G3DSA:3.30.540.10 1 148 1.9E-40 T 29-03-2018 CFE88_RS05805 a49d985d9a973b4a4a1ff6486763ffbb 273 Pfam PF00459 Inositol monophosphatase family 4 253 2.4E-55 T 29-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 SUPERFAMILY SSF53383 3 440 4.71E-111 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 Gene3D G3DSA:3.40.640.10 84 337 1.0E-45 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 3 446 48.039 T 29-03-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 Pfam PF02347 Glycine cleavage system P-protein 3 439 9.4E-149 T 29-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 Gene3D G3DSA:3.90.1150.10 338 446 2.3E-25 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS03580 b45cdbe6d662fe68bb219ab7ff5c027d 448 PIRSF PIRSF006815 3 447 3.7E-179 T 29-03-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 CFE88_RS08460 65cef3dcc6d09316986ba898b2741111 205 Pfam PF01712 Deoxynucleoside kinase 6 198 2.6E-46 T 29-03-2018 IPR031314 Deoxynucleoside kinase domain CFE88_RS08460 65cef3dcc6d09316986ba898b2741111 205 SUPERFAMILY SSF52540 1 200 2.23E-43 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS08460 65cef3dcc6d09316986ba898b2741111 205 Gene3D G3DSA:3.40.50.300 2 202 9.9E-35 T 29-03-2018 CFE88_RS08460 65cef3dcc6d09316986ba898b2741111 205 PIRSF PIRSF000705 1 205 3.0E-57 T 29-03-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 CFE88_RS06965 53bdc1de3a6c8f1319a8271994f5cd3c 286 Pfam PF04018 Domain of unknown function (DUF368) 15 251 8.8E-51 T 29-03-2018 IPR007163 Protein of unknown function DUF368 CFE88_RS05560 3d9d6755d2baca880a10e91151bb418e 537 TIGRFAM TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC 11 535 2.6E-189 T 29-03-2018 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS05560 3d9d6755d2baca880a10e91151bb418e 537 PIRSF PIRSF012535 1 537 4.2E-235 T 29-03-2018 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS05560 3d9d6755d2baca880a10e91151bb418e 537 Pfam PF10079 Bacillithiol biosynthesis BshC 1 534 1.4E-158 T 29-03-2018 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS05560 3d9d6755d2baca880a10e91151bb418e 537 Hamap MF_01867 Putative cysteine ligase BshC [bshC]. 1 537 30.009 T 29-03-2018 IPR011199 Bacillithiol biosynthesis BshC CFE88_RS10990 dd307f4d37591768fb84722a518b8a7f 150 Pfam PF13930 DNA/RNA non-specific endonuclease 9 140 1.2E-32 T 29-03-2018 CFE88_RS10845 c35c2b09fb53b61cdf556c2ff939885f 304 Gene3D G3DSA:3.40.190.10 1 253 0.0011 T 29-03-2018 CFE88_RS10845 c35c2b09fb53b61cdf556c2ff939885f 304 Pfam PF07901 Protein of unknown function (DUF1672) 30 299 9.9E-134 T 29-03-2018 IPR012873 Protein of unknown function DUF1672 CFE88_RS02015 5d580e6a248a12e354486c8b46f9663b 152 Pfam PF00578 AhpC/TSA family 5 131 1.1E-36 T 29-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CFE88_RS02015 5d580e6a248a12e354486c8b46f9663b 152 Gene3D G3DSA:3.40.30.10 1 152 2.7E-36 T 29-03-2018 CFE88_RS02015 5d580e6a248a12e354486c8b46f9663b 152 SUPERFAMILY SSF52833 1 151 6.94E-46 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS02015 5d580e6a248a12e354486c8b46f9663b 152 PIRSF PIRSF000239 1 150 2.7E-27 T 29-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CFE88_RS04380 ea220cd854fac93c73168866ed6a31e2 207 Gene3D G3DSA:3.20.20.70 1 205 1.3E-50 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS04380 ea220cd854fac93c73168866ed6a31e2 207 SUPERFAMILY SSF51366 1 203 7.69E-48 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS04380 ea220cd854fac93c73168866ed6a31e2 207 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 1 206 32.647 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CFE88_RS04380 ea220cd854fac93c73168866ed6a31e2 207 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4 201 2.6E-37 T 29-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 SMART SM00387 252 344 5.2E-8 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 SUPERFAMILY SSF55874 222 343 5.5E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 PIRSF PIRSF037432 1 344 3.6E-194 T 29-03-2018 IPR017203 Signal transduction histidine kinase, NreB GO:0000155|GO:0004673|GO:0005506|GO:0005524|GO:0005737|GO:0018106 CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 Gene3D G3DSA:3.30.565.10 211 344 2.0E-22 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 Gene3D G3DSA:3.30.450.20 6 167 1.3E-4 T 29-03-2018 CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 257 343 1.8E-9 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS12235 4bebcf5cf8c299e2e1ba47d1f59f34e9 344 Pfam PF07730 Histidine kinase 149 214 1.7E-14 T 29-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CFE88_RS01280 395ddb10e72ba7f2aeacc357bbd8e190 145 Pfam PF07977 FabA-like domain 14 135 2.0E-33 T 29-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS01280 395ddb10e72ba7f2aeacc357bbd8e190 145 Gene3D G3DSA:3.10.129.10 1 145 1.1E-53 T 29-03-2018 CFE88_RS01280 395ddb10e72ba7f2aeacc357bbd8e190 145 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 5 144 31.836 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS01280 395ddb10e72ba7f2aeacc357bbd8e190 145 SUPERFAMILY SSF54637 3 142 3.09E-46 T 29-03-2018 IPR029069 HotDog domain CFE88_RS01280 395ddb10e72ba7f2aeacc357bbd8e190 145 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 6 142 9.5E-53 T 29-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 SUPERFAMILY SSF82866 124 332 1.7E-30 T 29-03-2018 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 Gene3D G3DSA:1.20.1640.10 469 690 5.6E-32 T 29-03-2018 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 Gene3D G3DSA:1.20.1640.10 79 344 1.1E-35 T 29-03-2018 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 SUPERFAMILY SSF82866 454 692 1.7E-30 T 29-03-2018 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 Pfam PF03176 MMPL family 46 360 2.7E-62 T 29-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 CFE88_RS08260 92b36644bd324774b6d63cc2baeac9d7 893 Pfam PF03176 MMPL family 389 695 9.3E-40 T 29-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 CFE88_RS09745 e5bdf4a91063e83859a47b7d0a5def98 230 Pfam PF03591 AzlC protein 15 155 6.6E-38 T 29-03-2018 IPR011606 Branched-chain amino acid transport, permease CFE88_RS08880 6ccb808d492d148d98ca80806e051ec0 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 1 120 5.4E-47 T 29-03-2018 IPR006056 RidA family CFE88_RS08880 6ccb808d492d148d98ca80806e051ec0 126 Pfam PF01042 Endoribonuclease L-PSP 9 120 4.2E-41 T 29-03-2018 IPR006175 YjgF/YER057c/UK114 family CFE88_RS08880 6ccb808d492d148d98ca80806e051ec0 126 Gene3D G3DSA:3.30.1330.40 1 125 7.5E-43 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CFE88_RS08880 6ccb808d492d148d98ca80806e051ec0 126 SUPERFAMILY SSF55298 2 123 2.36E-44 T 29-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like CFE88_RS11290 971ce4090dc8e46b785dd2d2c8cb7dd4 72 Pfam PF06855 YozE SAM-like fold 2 67 5.2E-20 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS11290 971ce4090dc8e46b785dd2d2c8cb7dd4 72 Gene3D G3DSA:1.10.150.260 1 68 4.1E-21 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS11290 971ce4090dc8e46b785dd2d2c8cb7dd4 72 SUPERFAMILY SSF140652 2 67 1.01E-19 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS01840 02db92f1b09eece0868aa3505f0b7f48 316 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 128 3.5E-34 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CFE88_RS01840 02db92f1b09eece0868aa3505f0b7f48 316 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 3 295 2.4E-95 T 29-03-2018 IPR005218 Diacylglycerol/lipid kinase CFE88_RS01840 02db92f1b09eece0868aa3505f0b7f48 316 Gene3D G3DSA:3.40.50.10330 1 132 5.7E-33 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 CFE88_RS01840 02db92f1b09eece0868aa3505f0b7f48 316 SUPERFAMILY SSF111331 1 301 8.11E-82 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain CFE88_RS01840 02db92f1b09eece0868aa3505f0b7f48 316 SMART SM00046 4 132 3.2E-11 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CFE88_RS05525 40d41d094af9fe3a0f3133dd1032f406 465 Pfam PF08478 POTRA domain, FtsQ-type 221 289 1.5E-18 T 29-03-2018 IPR013685 POTRA domain, FtsQ-type CFE88_RS05525 40d41d094af9fe3a0f3133dd1032f406 465 Gene3D G3DSA:3.10.20.310 222 301 8.3E-5 T 29-03-2018 CFE88_RS05525 40d41d094af9fe3a0f3133dd1032f406 465 Hamap MF_00912 Cell division protein DivIB [divIB]. 93 442 29.402 T 29-03-2018 IPR026580 Cell division protein DivIB CFE88_RS04385 84af3dc47680708bffd677f4e8179806 262 SUPERFAMILY SSF51366 31 254 1.77E-72 T 29-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 CFE88_RS04385 84af3dc47680708bffd677f4e8179806 262 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 2 255 33.613 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CFE88_RS04385 84af3dc47680708bffd677f4e8179806 262 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 50 64 - T 29-03-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 CFE88_RS04385 84af3dc47680708bffd677f4e8179806 262 Pfam PF00218 Indole-3-glycerol phosphate synthase 4 251 1.2E-76 T 29-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CFE88_RS04385 84af3dc47680708bffd677f4e8179806 262 Gene3D G3DSA:3.20.20.70 3 257 2.6E-56 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS01985 64c405d5cadade7e643b27cc0e931043 324 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 161 3.2E-25 T 29-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CFE88_RS09530 fd7ee3a01dfd241fa988841ca7bbf45b 247 Gene3D G3DSA:3.50.30.50 14 247 9.4E-51 T 29-03-2018 CFE88_RS09530 fd7ee3a01dfd241fa988841ca7bbf45b 247 SUPERFAMILY SSF102198 16 246 1.02E-54 T 29-03-2018 CFE88_RS09530 fd7ee3a01dfd241fa988841ca7bbf45b 247 Pfam PF04199 Putative cyclase 19 185 1.2E-33 T 29-03-2018 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 Pfam PF00797 N-acetyltransferase 22 255 7.5E-72 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 PRINTS PR01543 Arylamine N-acetyltransferase signature 45 68 5.1E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 PRINTS PR01543 Arylamine N-acetyltransferase signature 101 126 5.1E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 PRINTS PR01543 Arylamine N-acetyltransferase signature 21 44 5.1E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 PRINTS PR01543 Arylamine N-acetyltransferase signature 69 91 5.1E-12 T 29-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 Gene3D G3DSA:3.30.2140.10 166 256 1.2E-7 T 29-03-2018 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 Gene3D G3DSA:3.30.2140.10 1 135 3.6E-30 T 29-03-2018 CFE88_RS10670 30294de12ebd5b93561f47b42c9fe75f 261 SUPERFAMILY SSF54001 2 258 9.42E-67 T 29-03-2018 CFE88_RS12105 41c572a81b79c0045a56c7285efe01f7 128 Pfam PF04138 GtrA-like protein 12 123 3.8E-23 T 29-03-2018 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 CFE88_RS07060 ab3136ca1fd29eab43a9e30123b325ea 67 Pfam PF06855 YozE SAM-like fold 2 65 1.9E-18 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS07060 ab3136ca1fd29eab43a9e30123b325ea 67 Gene3D G3DSA:1.10.150.260 1 66 9.2E-19 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS07060 ab3136ca1fd29eab43a9e30123b325ea 67 SUPERFAMILY SSF140652 1 65 2.62E-20 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS08355 af43f5e289ee77d09c3f3876bc0a0a53 59 ProDom PD439017 VRAX 1 55 7.0E-18 T 29-03-2018 IPR035374 Protein VraX CFE88_RS08355 af43f5e289ee77d09c3f3876bc0a0a53 59 Pfam PF17412 Family of unknown function 1 55 1.3E-38 T 29-03-2018 IPR035374 Protein VraX CFE88_RS11150 6bd0ce2dc410101ee9a5049f074613b6 195 Pfam PF13273 Protein of unknown function (DUF4064) 3 108 4.9E-21 T 29-03-2018 IPR025273 Domain of unknown function DUF4064 CFE88_RS02290 f8c010afc6e413217032fbeb7d331931 186 Pfam PF11667 Putative zincin peptidase 59 163 5.0E-18 T 29-03-2018 IPR021683 Putative zincin peptidase CFE88_RS04215 166f0edcf41e039f1798ef0b1f84a7b5 102 Pfam PF06279 Protein of unknown function (DUF1033) 1 93 1.1E-18 T 29-03-2018 IPR010434 Protein of unknown function DUF1033 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 3.2E-70 T 29-03-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 204 6.3E-81 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 Gene3D G3DSA:3.40.1370.10 2 145 9.9E-56 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 Gene3D G3DSA:3.40.1370.10 146 205 2.4E-16 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 36.464 T 29-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CFE88_RS00620 185a20177e5f917cc7e75043dacea23e 207 SUPERFAMILY SSF52166 1 206 8.9E-81 T 29-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 CFE88_RS03405 b508e7656473fc74ced7095b0542fd5d 118 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 59 70 - T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CFE88_RS03405 b508e7656473fc74ced7095b0542fd5d 118 Gene3D G3DSA:1.10.3830.10 1 108 2.1E-37 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CFE88_RS03405 b508e7656473fc74ced7095b0542fd5d 118 Pfam PF01219 Prokaryotic diacylglycerol kinase 5 106 1.7E-33 T 29-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CFE88_RS01300 627d85072646c7276b5b55daebc47e8a 229 Pfam PF03070 TENA/THI-4/PQQC family 11 216 5.4E-45 T 29-03-2018 IPR004305 Thiaminase-2/PQQC CFE88_RS01300 627d85072646c7276b5b55daebc47e8a 229 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 12 216 1.7E-70 T 29-03-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 CFE88_RS01300 627d85072646c7276b5b55daebc47e8a 229 Gene3D G3DSA:1.20.910.10 1 225 3.6E-33 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CFE88_RS01300 627d85072646c7276b5b55daebc47e8a 229 SUPERFAMILY SSF48613 3 223 1.11E-51 T 29-03-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CFE88_RS09195 b56559f906c7ea5eb31b59554d1a1d3b 184 Pfam PF03592 Terminase small subunit 4 145 9.7E-33 T 29-03-2018 IPR005335 Terminase small subunit GO:0006323 CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 Gene3D G3DSA:3.90.180.10 10 162 1.5E-34 T 29-03-2018 CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 6 327 2.1E-133 T 29-03-2018 IPR014188 Acrylyl-CoA reductase AcuI CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 Pfam PF00107 Zinc-binding dehydrogenase 163 270 8.6E-14 T 29-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 91 4.9E-8 T 29-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 SMART SM00829 16 326 3.4E-7 T 29-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 SUPERFAMILY SSF51735 120 295 2.55E-34 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 SUPERFAMILY SSF50129 5 147 3.65E-41 T 29-03-2018 IPR011032 GroES-like CFE88_RS00020 5ff0f24f3c6fc9fb1e0924c689ea9376 330 Gene3D G3DSA:3.40.50.720 163 273 1.2E-12 T 29-03-2018 CFE88_RS01550 9219439c5e7ffb4118598972d733042f 350 Pfam PF04143 Sulphur transport 21 330 1.4E-99 T 29-03-2018 IPR007272 Sulphur transport domain CFE88_RS09070 3729b8038d6be80c00df2b777664fb62 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 1.1E-20 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS09070 3729b8038d6be80c00df2b777664fb62 219 Gene3D G3DSA:1.10.3720.10 1 219 8.2E-36 T 29-03-2018 CFE88_RS09070 3729b8038d6be80c00df2b777664fb62 219 SUPERFAMILY SSF161098 9 203 1.28E-47 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS08230 6bf7a2aa7bf0f166d603d584602ea644 168 Pfam PF08741 YwhD family 4 166 7.1E-80 T 29-03-2018 IPR014852 Uncharacterised protein YwhD CFE88_RS12700 b29893c9123de000001eb06736100bc3 131 Gene3D G3DSA:1.20.1640.10 1 129 1.4E-4 T 29-03-2018 CFE88_RS11265 cf2d33b114d27172b016519d9c9f5c7a 432 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 7 369 1.1E-98 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CFE88_RS11265 cf2d33b114d27172b016519d9c9f5c7a 432 PIRSF PIRSF004539 2 431 3.5E-137 T 29-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CFE88_RS02885 6694d1e145ca764598ab398731156ce7 156 Gene3D G3DSA:2.20.25.10 1 45 2.4E-4 T 29-03-2018 CFE88_RS02885 6694d1e145ca764598ab398731156ce7 156 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 7.7E-57 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CFE88_RS02885 6694d1e145ca764598ab398731156ce7 156 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 78.461 T 29-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CFE88_RS02885 6694d1e145ca764598ab398731156ce7 156 Pfam PF03477 ATP cone domain 50 136 2.5E-17 T 29-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CFE88_RS04195 b6c858f286a0346251c4000d97bfe794 447 Pfam PF05525 Branched-chain amino acid transport protein 2 434 2.7E-134 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CFE88_RS04195 b6c858f286a0346251c4000d97bfe794 447 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 9 421 2.5E-142 T 29-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 Gene3D G3DSA:3.90.180.10 8 68 0.0011 T 29-03-2018 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 Gene3D G3DSA:1.10.1040.10 69 330 9.1E-115 T 29-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 2 328 45.651 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 SUPERFAMILY SSF48179 183 329 2.89E-70 T 29-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 326 1.2E-135 T 29-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 325 1.5E-65 T 29-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 177 1.6E-76 T 29-03-2018 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 PIRSF PIRSF000116 1 208 2.4E-39 T 29-03-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 PIRSF PIRSF000116 202 333 4.2E-14 T 29-03-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CFE88_RS01490 9f82ec6641caad56bf919f6ed377a13d 334 SUPERFAMILY SSF51735 3 182 1.21E-71 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 SUPERFAMILY SSF51905 10 122 1.04E-35 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 SUPERFAMILY SSF51905 157 238 1.04E-35 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 Pfam PF01266 FAD dependent oxidoreductase 21 352 1.1E-56 T 29-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 Gene3D G3DSA:3.50.50.60 4 94 2.5E-8 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 Gene3D G3DSA:3.30.9.10 98 204 2.7E-10 T 29-03-2018 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 Gene3D G3DSA:3.30.9.10 205 345 7.4E-39 T 29-03-2018 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 SUPERFAMILY SSF54373 249 344 5.49E-12 T 29-03-2018 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 405 532 5.7E-24 T 29-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 43 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 20 32 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 368 380 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 94 106 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 338 344 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 49 61 2.0E-30 T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 25 42 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS04940 92c60e20a02fd1b16cca0846a2ae553a 557 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 373 383 - T 29-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 Gene3D G3DSA:3.30.70.890 173 324 9.5E-45 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 Pfam PF00288 GHMP kinases N terminal domain 91 143 7.7E-8 T 29-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 PIRSF PIRSF015950 1 327 1.2E-122 T 29-03-2018 IPR005935 Diphosphomevalonate/phosphomevalonate decarboxylase GO:0008299|GO:0016831 KEGG: 00900+4.1.1.33|MetaCyc: PWY-7391|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-2426168|Reactome: R-HSA-446199 CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 SUPERFAMILY SSF55060 176 311 3.74E-44 T 29-03-2018 IPR013750 GHMP kinase, C-terminal domain CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 SUPERFAMILY SSF54211 3 164 3.34E-43 T 29-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 Gene3D G3DSA:3.30.230.10 2 172 1.6E-60 T 29-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CFE88_RS08290 4f6a62c781fded04d6e9fc57d9399f6f 327 TIGRFAM TIGR01240 mevDPdecarb: diphosphomevalonate decarboxylase 6 308 4.6E-123 T 29-03-2018 IPR029765 Diphosphomevalonate decarboxylase GO:0004163|GO:0005829|GO:0019287 KEGG: 00900+4.1.1.33|MetaCyc: PWY-7391|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-2426168|Reactome: R-HSA-446199 CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 Pfam PF01966 HD domain 161 277 3.6E-11 T 29-03-2018 IPR006674 HD domain CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 Pfam PF01336 OB-fold nucleic acid binding domain 27 88 8.2E-7 T 29-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 Gene3D G3DSA:1.10.3210.10 120 309 6.8E-16 T 29-03-2018 CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 SUPERFAMILY SSF50249 29 90 9.42E-7 T 29-03-2018 IPR012340 Nucleic acid-binding, OB-fold CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 Gene3D G3DSA:2.40.50.140 6 102 2.9E-11 T 29-03-2018 CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 SUPERFAMILY SSF109604 139 279 5.42E-17 T 29-03-2018 CFE88_RS02275 b621a62dd75a5e511c7b8687bbee5e41 313 SMART SM00471 155 287 2.5E-4 T 29-03-2018 IPR003607 HD/PDEase domain CFE88_RS00875 736f4ef602824ddfc6dd916d89a23cf7 585 Gene3D G3DSA:1.20.58.70 466 538 0.074 T 29-03-2018 CFE88_RS00875 736f4ef602824ddfc6dd916d89a23cf7 585 Pfam PF06276 Ferric iron reductase FhuF-like transporter 414 569 2.0E-27 T 29-03-2018 IPR022770 Ferric iron reductase FhuF domain CFE88_RS00875 736f4ef602824ddfc6dd916d89a23cf7 585 Pfam PF04183 IucA / IucC family 160 383 1.3E-49 T 29-03-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 Gene3D G3DSA:3.40.50.720 1 293 6.3E-66 T 29-03-2018 CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 58 290 7.4E-54 T 29-03-2018 CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 185 213 - T 29-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 SUPERFAMILY SSF51735 50 290 2.86E-70 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 236 4.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 50 67 4.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 188 4.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 217 4.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS00220 54a6d2c14d71d5c1bd2d22dfdf38f87f 293 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 254 274 4.1E-29 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS10045 7abd2f28e71679a1afef05c53bae94cc 177 Pfam PF00583 Acetyltransferase (GNAT) family 29 132 2.8E-10 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS10045 7abd2f28e71679a1afef05c53bae94cc 177 SUPERFAMILY SSF55729 3 140 1.06E-23 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS10045 7abd2f28e71679a1afef05c53bae94cc 177 Gene3D G3DSA:3.40.630.30 1 138 6.6E-17 T 29-03-2018 CFE88_RS02925 8ff7db09e4971bad24f1b680a2814acb 203 Pfam PF00293 NUDIX domain 65 199 6.2E-9 T 29-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CFE88_RS02925 8ff7db09e4971bad24f1b680a2814acb 203 SUPERFAMILY SSF55811 65 188 1.49E-13 T 29-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 CFE88_RS02925 8ff7db09e4971bad24f1b680a2814acb 203 Gene3D G3DSA:3.90.79.10 61 202 1.3E-8 T 29-03-2018 CFE88_RS07880 a83e0212d425022efe64b728b3899fd4 199 Gene3D G3DSA:2.40.380.10 2 171 2.1E-22 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS07880 a83e0212d425022efe64b728b3899fd4 199 Pfam PF04167 Protein of unknown function (DUF402) 63 130 9.1E-18 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS07880 a83e0212d425022efe64b728b3899fd4 199 SUPERFAMILY SSF159234 2 160 8.24E-30 T 29-03-2018 IPR007295 Domain of unknown function DUF402 CFE88_RS02600 5ee11178323f5295a92f67739fd584a3 263 Gene3D G3DSA:3.90.1200.10 29 257 3.6E-20 T 29-03-2018 CFE88_RS02600 5ee11178323f5295a92f67739fd584a3 263 Pfam PF01636 Phosphotransferase enzyme family 22 213 1.2E-19 T 29-03-2018 IPR002575 Aminoglycoside phosphotransferase CFE88_RS02600 5ee11178323f5295a92f67739fd584a3 263 SUPERFAMILY SSF56112 2 228 2.01E-27 T 29-03-2018 IPR011009 Protein kinase-like domain CFE88_RS05800 c666050f20f2d30719d4b15cd7ef1fa4 63 Pfam PF17259 Family of unknown function (DUF5325) 4 63 2.9E-17 T 29-03-2018 IPR035211 Protein of unknown function DUF5325 CFE88_RS06080 7470f1e49beb6d6ee7cc98513ad5883e 156 Pfam PF10804 Protein of unknown function (DUF2538) 1 155 1.2E-91 T 29-03-2018 IPR024469 Protein of unknown function DUF2538 CFE88_RS06080 7470f1e49beb6d6ee7cc98513ad5883e 156 ProDom PD034207 SA0907 SIMILAR ORF2 TRANSCRIPTIONAL AUTOLYSIN SAV1055 MW0938 ATLR CDS REGULATOR 1 156 1.0E-88 T 29-03-2018 IPR024469 Protein of unknown function DUF2538 CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 Gene3D G3DSA:3.40.50.620 2 137 1.5E-22 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 SUPERFAMILY SSF52402 1 137 3.6E-21 T 29-03-2018 CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 PRINTS PR01438 Universal stress protein signature 115 137 5.6E-12 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 PRINTS PR01438 Universal stress protein signature 2 20 5.6E-12 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 PRINTS PR01438 Universal stress protein signature 97 109 5.6E-12 T 29-03-2018 IPR006015 Universal stress protein A CFE88_RS02790 5ef6b4e7b1a55db39b5fde9fe7c46b3d 137 Pfam PF00582 Universal stress protein family 1 137 7.2E-21 T 29-03-2018 IPR006016 UspA GO:0006950 CFE88_RS08245 853008c1526d1928a37bd1050a7acbda 224 SUPERFAMILY SSF53098 69 216 1.14E-8 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS08245 853008c1526d1928a37bd1050a7acbda 224 Gene3D G3DSA:1.10.10.10 5 69 3.7E-5 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS08245 853008c1526d1928a37bd1050a7acbda 224 Pfam PF13610 DDE domain 72 203 2.0E-36 T 29-03-2018 IPR032874 DDE domain CFE88_RS08245 853008c1526d1928a37bd1050a7acbda 224 Gene3D G3DSA:3.30.420.10 70 217 8.8E-15 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS12160 f883f93d1293c4570906fe212d42a2bf 273 Pfam PF01226 Formate/nitrite transporter 31 263 1.6E-51 T 29-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 CFE88_RS12160 f883f93d1293c4570906fe212d42a2bf 273 Gene3D G3DSA:1.20.1080.10 11 272 5.7E-59 T 29-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CFE88_RS11860 da39213ad254c5f4fa26b1aaa4a33b32 288 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 264 1.0E-121 T 29-03-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 CFE88_RS11860 da39213ad254c5f4fa26b1aaa4a33b32 288 SUPERFAMILY SSF53448 3 268 6.84E-72 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS11860 da39213ad254c5f4fa26b1aaa4a33b32 288 Pfam PF00483 Nucleotidyl transferase 6 259 2.8E-38 T 29-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CFE88_RS11860 da39213ad254c5f4fa26b1aaa4a33b32 288 Gene3D G3DSA:3.90.550.10 2 277 1.6E-64 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS04505 85dba866d325b0e287380ef8f1216673 75 ProDom PD048972 UPF0154 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED FAMILY YNEF SUPERFAMILY MG335.1 EXPORTED MYCGA5700 26 56 1.0E-4 T 29-03-2018 IPR005359 Protein with unknown function UPF0154 CFE88_RS04505 85dba866d325b0e287380ef8f1216673 75 Hamap MF_00363 UPF0154 protein . 2 72 22.558 T 29-03-2018 IPR005359 Protein with unknown function UPF0154 CFE88_RS04505 85dba866d325b0e287380ef8f1216673 75 Pfam PF03672 Uncharacterised protein family (UPF0154) 10 69 1.0E-31 T 29-03-2018 IPR005359 Protein with unknown function UPF0154 CFE88_RS04505 85dba866d325b0e287380ef8f1216673 75 Gene3D G3DSA:1.10.238.10 25 75 2.8E-4 T 29-03-2018 CFE88_RS03090 731027625eb7c2786189b686f041c579 757 Gene3D G3DSA:3.90.1640.10 61 242 3.7E-26 T 29-03-2018 CFE88_RS03090 731027625eb7c2786189b686f041c579 757 SUPERFAMILY SSF64182 57 441 1.83E-117 T 29-03-2018 CFE88_RS03090 731027625eb7c2786189b686f041c579 757 Pfam PF01368 DHH family 82 224 6.0E-13 T 29-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CFE88_RS03090 731027625eb7c2786189b686f041c579 757 Pfam PF10141 Single-strand DNA-specific exonuclease, C terminal domain 563 752 1.3E-54 T 29-03-2018 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal CFE88_RS03090 731027625eb7c2786189b686f041c579 757 Pfam PF02272 DHHA1 domain 312 436 5.0E-22 T 29-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CFE88_RS03090 731027625eb7c2786189b686f041c579 757 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 28 557 8.7E-183 T 29-03-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 CFE88_RS05745 da514039c1d95b4b1fbbf7307d4c1784 144 Gene3D G3DSA:1.20.1500.10 8 117 6.8E-24 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS05745 da514039c1d95b4b1fbbf7307d4c1784 144 SUPERFAMILY SSF158622 3 125 1.96E-32 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS05745 da514039c1d95b4b1fbbf7307d4c1784 144 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 9 114 4.0E-15 T 29-03-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS10345 3468b5f90093817b55c1bd274402c904 396 Gene3D G3DSA:1.20.1250.20 199 385 1.2E-16 T 29-03-2018 CFE88_RS10345 3468b5f90093817b55c1bd274402c904 396 SUPERFAMILY SSF103473 8 384 1.09E-41 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10345 3468b5f90093817b55c1bd274402c904 396 Gene3D G3DSA:1.20.1250.20 3 195 5.7E-22 T 29-03-2018 CFE88_RS10345 3468b5f90093817b55c1bd274402c904 396 Pfam PF07690 Major Facilitator Superfamily 13 331 1.1E-26 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS06615 03b0abdb9c9a13ee2aedb00889c05425 356 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 50 101 2.1E-15 T 29-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CFE88_RS06615 03b0abdb9c9a13ee2aedb00889c05425 356 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 172 356 3.9E-30 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06615 03b0abdb9c9a13ee2aedb00889c05425 356 SUPERFAMILY SSF161098 147 337 3.01E-28 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06615 03b0abdb9c9a13ee2aedb00889c05425 356 Gene3D G3DSA:1.10.3720.10 61 356 3.4E-45 T 29-03-2018 CFE88_RS12020 b64b59d4faaf2dc3e0d97ab688e7a3b4 231 Gene3D G3DSA:1.10.3720.10 7 217 1.9E-28 T 29-03-2018 CFE88_RS12020 b64b59d4faaf2dc3e0d97ab688e7a3b4 231 SUPERFAMILY SSF161098 18 204 5.36E-36 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS12020 b64b59d4faaf2dc3e0d97ab688e7a3b4 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 211 1.9E-21 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS01340 286836b09f7b859826782dbf1c12b6a3 69 Gene3D G3DSA:3.30.70.100 7 69 3.0E-8 T 29-03-2018 CFE88_RS01340 286836b09f7b859826782dbf1c12b6a3 69 Pfam PF00403 Heavy-metal-associated domain 10 66 1.2E-5 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS01340 286836b09f7b859826782dbf1c12b6a3 69 SUPERFAMILY SSF55008 5 68 2.09E-8 T 29-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 78 1.0E-8 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 Gene3D G3DSA:1.20.58.110 1 83 1.9E-20 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 Pfam PF01649 Ribosomal protein S20 2 80 2.5E-21 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 83 12.41 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 SUPERFAMILY SSF46992 3 82 3.14E-21 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS03325 1d4a86d7c7ccb3bdd3e155fe3be2808f 83 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 79 1.1E-18 T 29-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS00360 c2d5a313c64b1c239cdfd039e88248a5 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.3E-22 T 29-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CFE88_RS00360 c2d5a313c64b1c239cdfd039e88248a5 105 SUPERFAMILY SSF103481 4 102 5.75E-15 T 29-03-2018 CFE88_RS09870 e22d9a344cb33a1c86696eb3f25a59cb 454 SUPERFAMILY SSF53474 16 263 3.98E-14 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09870 e22d9a344cb33a1c86696eb3f25a59cb 454 Gene3D G3DSA:3.40.50.1820 7 306 7.9E-17 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11935 17f23769564ec03328b9eee258c4e9aa 155 Gene3D G3DSA:3.30.1830.10 25 148 8.2E-34 T 29-03-2018 CFE88_RS11935 17f23769564ec03328b9eee258c4e9aa 155 PIRSF PIRSF006187 1 150 1.3E-51 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS11935 17f23769564ec03328b9eee258c4e9aa 155 SUPERFAMILY SSF160704 21 148 5.36E-40 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS11935 17f23769564ec03328b9eee258c4e9aa 155 Pfam PF06998 Protein of unknown function (DUF1307) 26 146 2.6E-39 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS05660 6db3a6b9345aa2f492a87b3d070574be 88 Pfam PF05164 Cell division protein ZapA 8 86 2.3E-14 T 29-03-2018 IPR007838 Cell division protein ZapA-like CFE88_RS05660 6db3a6b9345aa2f492a87b3d070574be 88 SUPERFAMILY SSF102829 7 86 4.71E-19 T 29-03-2018 IPR007838 Cell division protein ZapA-like CFE88_RS03960 b46748dd68c35bca217f92774d8eff31 228 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 126 194 1.1E-24 T 29-03-2018 IPR006343 DnaD domain CFE88_RS03960 b46748dd68c35bca217f92774d8eff31 228 SUPERFAMILY SSF158499 125 191 2.09E-21 T 29-03-2018 IPR006343 DnaD domain CFE88_RS03960 b46748dd68c35bca217f92774d8eff31 228 Gene3D G3DSA:1.10.10.630 120 197 3.7E-26 T 29-03-2018 IPR034829 DnaD-like domain CFE88_RS03960 b46748dd68c35bca217f92774d8eff31 228 Pfam PF07261 Replication initiation and membrane attachment 126 196 9.6E-25 T 29-03-2018 IPR006343 DnaD domain CFE88_RS07860 a57e9507ed9d67e43178ce42d0e2f08d 229 Gene3D G3DSA:1.10.1900.10 13 95 5.5E-9 T 29-03-2018 CFE88_RS07860 a57e9507ed9d67e43178ce42d0e2f08d 229 SUPERFAMILY SSF158560 5 96 2.94E-5 T 29-03-2018 CFE88_RS07860 a57e9507ed9d67e43178ce42d0e2f08d 229 Pfam PF06570 Protein of unknown function (DUF1129) 38 220 7.0E-10 T 29-03-2018 IPR009214 Protein of unknown function DUF1129 CFE88_RS10190 3f7a41a33ec1a05dc4cf52a62473fd4d 256 Pfam PF12730 ABC-2 family transporter protein 4 184 4.0E-16 T 29-03-2018 IPR032688 ABC-2 family transporter protein GO:0006810 CFE88_RS08875 089d6d449dc220629f1ac1ccd5bb0d32 102 SUPERFAMILY SSF160537 1 83 8.5E-33 T 29-03-2018 IPR007170 Stage V sporulation protein G GO:0030435 CFE88_RS08875 089d6d449dc220629f1ac1ccd5bb0d32 102 Pfam PF04026 SpoVG 1 81 4.9E-36 T 29-03-2018 IPR007170 Stage V sporulation protein G GO:0030435 CFE88_RS08875 089d6d449dc220629f1ac1ccd5bb0d32 102 Gene3D G3DSA:3.30.1120.40 1 83 2.1E-36 T 29-03-2018 IPR007170 Stage V sporulation protein G GO:0030435 CFE88_RS08875 089d6d449dc220629f1ac1ccd5bb0d32 102 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 92 28.997 T 29-03-2018 IPR007170 Stage V sporulation protein G GO:0030435 CFE88_RS09610 ca235b6a4890bc8e935e5238646e4cc8 626 PIRSF PIRSF018968 1 626 1.0E-104 T 29-03-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0006810 CFE88_RS09610 ca235b6a4890bc8e935e5238646e4cc8 626 Pfam PF02687 FtsX-like permease family 85 175 6.0E-8 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CFE88_RS10025 069c486682f1b00bf8041441fffd8169 261 Pfam PF04507 Csa1 family 1 257 1.3E-132 T 29-03-2018 IPR007595 Csa1 family CFE88_RS10025 069c486682f1b00bf8041441fffd8169 261 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 1 255 1.2E-104 T 29-03-2018 IPR007595 Csa1 family CFE88_RS00880 24feddf9493d03de208ff4710fa54013 353 Gene3D G3DSA:3.20.20.10 1 220 1.1E-23 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS00880 24feddf9493d03de208ff4710fa54013 353 Pfam PF01168 Alanine racemase, N-terminal domain 6 219 2.6E-20 T 29-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CFE88_RS00880 24feddf9493d03de208ff4710fa54013 353 SUPERFAMILY SSF51419 7 224 6.8E-23 T 29-03-2018 IPR029066 PLP-binding barrel CFE88_RS11585 3f91b537bace221e0988f0d61d935306 255 Pfam PF02517 CAAX protease self-immunity 152 239 1.0E-15 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS06930 9cb62e3e54b85ed176c04a6af7476eba 341 SUPERFAMILY SSF54631 183 314 1.09E-23 T 29-03-2018 CFE88_RS06930 9cb62e3e54b85ed176c04a6af7476eba 341 Pfam PF01595 Domain of unknown function DUF21 3 177 6.1E-47 T 29-03-2018 IPR002550 Domain of unknown function DUF21 CFE88_RS06930 9cb62e3e54b85ed176c04a6af7476eba 341 Gene3D G3DSA:3.20.20.70 121 336 1.1E-27 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 Gene3D G3DSA:3.90.1150.10 243 275 7.1E-4 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 185 199 - T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 Gene3D G3DSA:3.90.1150.10 276 364 6.3E-22 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 PIRSF PIRSF001434 1 362 1.4E-108 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 SUPERFAMILY SSF53383 20 359 5.35E-91 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 359 5.2E-115 T 29-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CFE88_RS09510 d3436a71b943609487ea6f06c40db677 367 Gene3D G3DSA:3.40.640.10 3 242 3.8E-46 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS11545 337c7c273c5c114520e1c7ac8284cfca 144 SUPERFAMILY SSF54001 32 142 7.36E-23 T 29-03-2018 CFE88_RS11545 337c7c273c5c114520e1c7ac8284cfca 144 Pfam PF05257 CHAP domain 41 120 5.5E-14 T 29-03-2018 IPR007921 CHAP domain CFE88_RS07050 cb56772390d33d574911595525cbe5ae 188 SMART SM00855 1 147 2.6E-16 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS07050 cb56772390d33d574911595525cbe5ae 188 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 1 180 2.5E-39 T 29-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CFE88_RS07050 cb56772390d33d574911595525cbe5ae 188 SUPERFAMILY SSF53254 1 177 4.02E-46 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS07050 cb56772390d33d574911595525cbe5ae 188 Gene3D G3DSA:3.40.50.1240 1 184 1.1E-40 T 29-03-2018 IPR029033 Histidine phosphatase superfamily CFE88_RS07050 cb56772390d33d574911595525cbe5ae 188 PIRSF PIRSF000709 1 154 6.0E-7 T 29-03-2018 CFE88_RS09090 5d992ac487f193327b467d5e55aff9b5 179 Gene3D G3DSA:2.160.20.80 1 177 3.0E-17 T 29-03-2018 CFE88_RS09090 5d992ac487f193327b467d5e55aff9b5 179 SUPERFAMILY SSF141571 15 159 4.32E-18 T 29-03-2018 CFE88_RS09090 5d992ac487f193327b467d5e55aff9b5 179 Pfam PF13599 Pentapeptide repeats (9 copies) 60 147 1.5E-21 T 29-03-2018 IPR001646 Pentapeptide repeat CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 SUPERFAMILY SSF46785 158 224 4.39E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 SUPERFAMILY SSF51206 36 152 4.19E-19 T 29-03-2018 IPR018490 Cyclic nucleotide-binding-like CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 Gene3D G3DSA:2.60.120.10 8 147 4.9E-13 T 29-03-2018 IPR014710 RmlC-like jelly roll fold CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 Gene3D G3DSA:1.10.10.10 148 227 3.9E-10 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 Pfam PF00027 Cyclic nucleotide-binding domain 41 127 4.9E-7 T 29-03-2018 IPR000595 Cyclic nucleotide-binding domain CFE88_RS10885 84adaa54f223ac04503207e2d2a016ae 228 Pfam PF13545 Crp-like helix-turn-helix domain 163 217 1.2E-7 T 29-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CFE88_RS05705 136ad7f840ac43e52f8c77f1f96a6079 184 Pfam PF02620 Uncharacterized ACR, COG1399 55 179 1.2E-19 T 29-03-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CFE88_RS06415 91bfaab03952c055361c906234dfb421 37 SUPERFAMILY SSF46785 1 36 2.99E-9 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06415 91bfaab03952c055361c906234dfb421 37 Gene3D G3DSA:1.10.10.10 1 37 5.3E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS06415 91bfaab03952c055361c906234dfb421 37 Pfam PF01638 HxlR-like helix-turn-helix 1 36 4.6E-12 T 29-03-2018 IPR002577 Helix-turn-helix, HxlR type CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 Pfam PF13244 Domain of unknown function (DUF4040) 636 699 2.4E-18 T 29-03-2018 IPR025383 Domain of unknown function DUF4040 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 116 4.7E-10 T 29-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 Pfam PF00361 Proton-conducting membrane transporter 129 426 2.5E-67 T 29-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 219 240 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 153 174 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 436 455 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 241 267 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 309 321 2.3E-41 T 29-03-2018 CFE88_RS08095 8911a60a39871fd008da4f731f499bb2 800 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 106 126 2.3E-41 T 29-03-2018 CFE88_RS04175 0451e452cde4cef8a98fe406be25adae 269 SUPERFAMILY SSF54593 138 263 7.35E-5 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS04175 0451e452cde4cef8a98fe406be25adae 269 SUPERFAMILY SSF54593 2 120 1.92E-14 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS04175 0451e452cde4cef8a98fe406be25adae 269 Gene3D G3DSA:3.10.180.10 1 125 1.2E-4 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS04175 0451e452cde4cef8a98fe406be25adae 269 Gene3D G3DSA:3.10.180.10 129 263 0.035 T 29-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CFE88_RS00170 60c567c1bb9083af544349394b7139ea 205 Gene3D G3DSA:3.10.300.10 1 198 2.8E-56 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS00170 60c567c1bb9083af544349394b7139ea 205 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 4 190 30.39 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS00170 60c567c1bb9083af544349394b7139ea 205 SUPERFAMILY SSF50486 3 197 2.67E-58 T 29-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 CFE88_RS00170 60c567c1bb9083af544349394b7139ea 205 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 6 187 7.6E-48 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS00170 60c567c1bb9083af544349394b7139ea 205 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 5 190 1.0E-48 T 29-03-2018 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CFE88_RS01225 a3be0abf611fce9e7a570b72c1c33aaa 116 ProDom PD020811 ATP SYNTHASE I ION HYDROLASE SUBUNIT I CF0 MEMBRANE HYDROGEN 29 115 4.0E-4 T 29-03-2018 CFE88_RS01225 a3be0abf611fce9e7a570b72c1c33aaa 116 Pfam PF03899 ATP synthase I chain 12 101 1.7E-9 T 29-03-2018 IPR005598 ATP synthase protein I CFE88_RS03715 24f16e43f494c61aceba48b3d4b7d79c 325 Pfam PF06081 Aromatic acid exporter family member 1 8 147 6.4E-45 T 29-03-2018 IPR010343 Aromatic acid exporter family member 1 CFE88_RS03715 24f16e43f494c61aceba48b3d4b7d79c 325 Pfam PF11728 Putative aromatic acid exporter C-terminal domain 151 314 4.3E-43 T 29-03-2018 IPR021062 Putative aromatic acid exporter, C-terminal CFE88_RS02260 20d324fb8c596f31f09c5d632ae20572 114 Gene3D G3DSA:1.20.1500.10 4 109 1.6E-29 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS02260 20d324fb8c596f31f09c5d632ae20572 114 SUPERFAMILY SSF158622 3 113 4.06E-37 T 29-03-2018 IPR023378 YheA/YmcA-like domain CFE88_RS02260 20d324fb8c596f31f09c5d632ae20572 114 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 6 108 1.8E-26 T 29-03-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS02260 20d324fb8c596f31f09c5d632ae20572 114 Hamap MF_01526 UPF0342 protein . 2 113 19.711 T 29-03-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA CFE88_RS08550 793f8bc762b2c2c0f342f2135e3f657b 86 Gene3D G3DSA:3.30.1330.30 5 86 1.9E-15 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS08550 793f8bc762b2c2c0f342f2135e3f657b 86 SUPERFAMILY SSF55315 11 84 3.47E-17 T 29-03-2018 IPR029064 50S ribosomal protein L30e-like CFE88_RS08550 793f8bc762b2c2c0f342f2135e3f657b 86 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 10 83 1.7E-11 T 29-03-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CFE88_RS04465 e59f442186eb98bb8a1d9464e75e848e 98 Gene3D G3DSA:2.60.300.12 1 96 1.2E-8 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CFE88_RS04465 e59f442186eb98bb8a1d9464e75e848e 98 PIRSF PIRSF034852 1 98 7.5E-33 T 29-03-2018 IPR008326 Uncharacterised conserved protein UCP034852 CFE88_RS04465 e59f442186eb98bb8a1d9464e75e848e 98 SUPERFAMILY SSF89360 1 82 2.35E-8 T 29-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CFE88_RS04435 b4bb0ec4462e0462240e71382703d924 409 Pfam PF01594 AI-2E family transporter 48 378 6.7E-78 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like CFE88_RS04435 b4bb0ec4462e0462240e71382703d924 409 PRINTS PR01988 Putative bacilysin exporter bacE signature 292 315 2.2E-5 T 29-03-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 CFE88_RS04435 b4bb0ec4462e0462240e71382703d924 409 PRINTS PR01988 Putative bacilysin exporter bacE signature 20 42 2.2E-5 T 29-03-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 CFE88_RS04435 b4bb0ec4462e0462240e71382703d924 409 PRINTS PR01988 Putative bacilysin exporter bacE signature 358 381 2.2E-5 T 29-03-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 CFE88_RS04435 b4bb0ec4462e0462240e71382703d924 409 PRINTS PR01988 Putative bacilysin exporter bacE signature 253 270 2.2E-5 T 29-03-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 CFE88_RS08670 893aa65db43c9aa2a5ab1d343b8f4a2a 153 PIRSF PIRSF010607 1 153 1.2E-63 T 29-03-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355|GO:0006950 CFE88_RS08670 893aa65db43c9aa2a5ab1d343b8f4a2a 153 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 3 148 5.9E-55 T 29-03-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355|GO:0006950 CFE88_RS11045 b39788380b59186ba18f8672c75b1cb5 65 Gene3D G3DSA:3.40.1580.10 2 64 4.3E-9 T 29-03-2018 CFE88_RS11045 b39788380b59186ba18f8672c75b1cb5 65 Pfam PF14568 SMI1-KNR4 cell-wall 12 62 1.7E-8 T 29-03-2018 CFE88_RS11045 b39788380b59186ba18f8672c75b1cb5 65 SUPERFAMILY SSF160631 6 63 1.44E-11 T 29-03-2018 CFE88_RS05750 0879046c284fc4b22aa70b02e1dfa12b 350 SUPERFAMILY SSF55797 230 335 4.13E-5 T 29-03-2018 IPR014044 CAP domain CFE88_RS05750 0879046c284fc4b22aa70b02e1dfa12b 350 Pfam PF00188 Cysteine-rich secretory protein family 238 338 6.9E-7 T 29-03-2018 IPR014044 CAP domain CFE88_RS05750 0879046c284fc4b22aa70b02e1dfa12b 350 Pfam PF14504 CAP-associated N-terminal 67 205 2.9E-41 T 29-03-2018 IPR029410 CAP-associated domain CFE88_RS05810 9cb2387c6ab601164bde0e2ae0efaaf0 203 PIRSF PIRSF021332 1 203 6.2E-88 T 29-03-2018 IPR009403 Protein of unknown function UPF0637 CFE88_RS05810 9cb2387c6ab601164bde0e2ae0efaaf0 203 Hamap MF_01851 UPF0637 protein . 5 203 37.242 T 29-03-2018 IPR009403 Protein of unknown function UPF0637 CFE88_RS05810 9cb2387c6ab601164bde0e2ae0efaaf0 203 SUPERFAMILY SSF142913 2 203 1.57E-73 T 29-03-2018 CFE88_RS05810 9cb2387c6ab601164bde0e2ae0efaaf0 203 Pfam PF06335 Protein of unknown function (DUF1054) 6 202 6.1E-77 T 29-03-2018 IPR009403 Protein of unknown function UPF0637 CFE88_RS05470 da4949fe5a45553c264806beca3ae0db 156 SUPERFAMILY SSF54001 44 149 9.51E-16 T 29-03-2018 CFE88_RS05470 da4949fe5a45553c264806beca3ae0db 156 Pfam PF05257 CHAP domain 45 126 7.2E-13 T 29-03-2018 IPR007921 CHAP domain CFE88_RS02295 8a048b87fc2b519ff3147caa0114ba66 123 Gene3D G3DSA:1.20.120.20 35 122 3.2E-5 T 29-03-2018 CFE88_RS00080 04513f37c11d94414846c88b25f3ce7b 318 Gene3D G3DSA:3.40.50.620 138 276 5.8E-32 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS00080 04513f37c11d94414846c88b25f3ce7b 318 Pfam PF02698 DUF218 domain 149 278 2.8E-29 T 29-03-2018 IPR003848 Domain of unknown function DUF218 CFE88_RS03210 591cdae67ffa941d0ff06cf3d017f8ff 422 Gene3D G3DSA:3.20.20.70 14 282 2.9E-5 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS03210 591cdae67ffa941d0ff06cf3d017f8ff 422 Pfam PF01136 Peptidase family U32 89 321 9.3E-86 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CFE88_RS03210 591cdae67ffa941d0ff06cf3d017f8ff 422 ProSitePatterns PS01276 Peptidase family U32 signature. 175 193 - T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CFE88_RS03210 591cdae67ffa941d0ff06cf3d017f8ff 422 Pfam PF16325 Peptidase family U32 C-terminal domain 337 418 3.6E-25 T 29-03-2018 IPR032525 Peptidase family U32, C-terminal CFE88_RS05605 9b2e84218fb2e54b97b17871ec86933a 195 Gene3D G3DSA:3.90.950.10 1 194 6.3E-71 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CFE88_RS05605 9b2e84218fb2e54b97b17871ec86933a 195 Pfam PF01725 Ham1 family 4 187 1.1E-57 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 CFE88_RS05605 9b2e84218fb2e54b97b17871ec86933a 195 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 189 1.1E-66 T 29-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 CFE88_RS05605 9b2e84218fb2e54b97b17871ec86933a 195 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 191 48.347 T 29-03-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 CFE88_RS05605 9b2e84218fb2e54b97b17871ec86933a 195 SUPERFAMILY SSF52972 2 190 2.88E-65 T 29-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CFE88_RS11165 6ed05414036286487bb0b0a0546049f9 187 Pfam PF00474 Sodium:solute symporter family 1 96 1.9E-11 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS05755 3dc17d52fa0023672fcbaea81593fcf5 153 Pfam PF04238 Protein of unknown function (DUF420) 6 134 1.2E-36 T 29-03-2018 IPR007352 Protein of unknown function DUF420 CFE88_RS05755 3dc17d52fa0023672fcbaea81593fcf5 153 Gene3D G3DSA:1.20.120.80 1 137 7.3E-11 T 29-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CFE88_RS09950 c02b7db4c653691c566828bf74ffb5b2 285 Gene3D G3DSA:3.40.1440.10 185 285 9.9E-11 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09950 c02b7db4c653691c566828bf74ffb5b2 285 SUPERFAMILY SSF82771 185 284 8.89E-13 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09950 c02b7db4c653691c566828bf74ffb5b2 285 Pfam PF01541 GIY-YIG catalytic domain 186 280 1.7E-8 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 Gene3D G3DSA:3.40.1280.10 1 159 7.5E-63 T 29-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 PIRSF PIRSF004505 1 159 2.3E-53 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 159 3.2E-53 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 30.094 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 SUPERFAMILY SSF75217 1 157 1.62E-57 T 29-03-2018 IPR029028 Alpha/beta knot methyltransferases CFE88_RS09825 a0988e9c3913bebe8265a91f47c1b9d4 159 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 1.0E-60 T 29-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 CFE88_RS12695 1f573423fcd806fcfa9cffc9ed587115 336 Pfam PF03432 Relaxase/Mobilisation nuclease domain 9 242 1.8E-83 T 29-03-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 CFE88_RS06075 d85ee3b0419ea22abf2f6c0002cec246 412 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 86 233 3.8E-42 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS06075 d85ee3b0419ea22abf2f6c0002cec246 412 Gene3D G3DSA:2.130.10.10 24 409 0.0011 T 29-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 CFE88_RS06075 d85ee3b0419ea22abf2f6c0002cec246 412 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 86 233 6.7E-33 T 29-03-2018 IPR004474 Cell envelope-related transcriptional attenuator domain CFE88_RS08665 12592bf4595fe9b058c13d319ac7c5d5 187 Gene3D G3DSA:4.10.860.10 107 183 1.6E-8 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS08665 12592bf4595fe9b058c13d319ac7c5d5 187 PIRSF PIRSF015034 1 187 4.5E-49 T 29-03-2018 IPR025542 YacH protein CFE88_RS08665 12592bf4595fe9b058c13d319ac7c5d5 187 SUPERFAMILY SSF46600 145 179 6.28E-5 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS08665 12592bf4595fe9b058c13d319ac7c5d5 187 Pfam PF02151 UvrB/uvrC motif 145 179 5.1E-6 T 29-03-2018 IPR001943 UVR domain GO:0005515 CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SUPERFAMILY SSF51126 2 152 6.29E-41 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SUPERFAMILY SSF51126 185 345 6.29E-41 T 29-03-2018 IPR011050 Pectin lyase fold/virulence factor CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SMART SM00710 118 149 2000.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SMART SM00710 290 313 1700.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SMART SM00710 319 340 4400.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 SMART SM00710 248 269 97.0 T 29-03-2018 IPR006626 Parallel beta-helix repeat CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 Pfam PF12708 Pectate lyase superfamily protein 2 164 7.1E-14 T 29-03-2018 IPR024535 Pectate lyase superfamily protein CFE88_RS01755 9503039823b4a6b14502e012d195c0d1 365 Gene3D G3DSA:2.160.20.10 1 362 1.1E-43 T 29-03-2018 IPR012334 Pectin lyase fold CFE88_RS02450 b76d586b7f4289ebd62a05e84b2176cb 117 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 114 3.5E-21 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CFE88_RS02450 b76d586b7f4289ebd62a05e84b2176cb 117 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 116 16.713 T 29-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CFE88_RS02250 1e5da90f777df3aed8eda9b36ac4529a 154 Gene3D G3DSA:1.10.260.40 9 151 3.2E-10 T 29-03-2018 CFE88_RS02250 1e5da90f777df3aed8eda9b36ac4529a 154 SUPERFAMILY SSF47413 10 62 8.85E-10 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS02250 1e5da90f777df3aed8eda9b36ac4529a 154 Pfam PF01381 Helix-turn-helix 15 61 3.2E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS02250 1e5da90f777df3aed8eda9b36ac4529a 154 SMART SM00530 13 67 9.5E-4 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS00495 56830c3200388acf0c0d4d37a1b0c285 333 Pfam PF00899 ThiF family 5 239 5.5E-53 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS00495 56830c3200388acf0c0d4d37a1b0c285 333 Gene3D G3DSA:3.40.50.720 21 267 3.1E-55 T 29-03-2018 CFE88_RS00495 56830c3200388acf0c0d4d37a1b0c285 333 SUPERFAMILY SSF69572 3 323 3.4E-76 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS06825 b4ea01efc0d8fc33d3187fcabc135bb7 81 Pfam PF07293 Protein of unknown function (DUF1450) 1 75 1.3E-35 T 29-03-2018 IPR009910 Protein of unknown function DUF1450 CFE88_RS06825 b4ea01efc0d8fc33d3187fcabc135bb7 81 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 1 77 1.0E-38 T 29-03-2018 CFE88_RS06825 b4ea01efc0d8fc33d3187fcabc135bb7 81 Hamap MF_01542 UPF0349 protein . 1 77 30.031 T 29-03-2018 IPR022916 Protein of unknown function UPF0349 CFE88_RS03825 7fdda70b397b2c0fdbb2cc17a270bd2b 320 PIRSF PIRSF021350 1 317 3.2E-103 T 29-03-2018 IPR008308 Uncharacterised conserved protein UCP021350 CFE88_RS03825 7fdda70b397b2c0fdbb2cc17a270bd2b 320 Pfam PF14493 Helix-turn-helix domain 225 308 1.1E-15 T 29-03-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CFE88_RS07230 623b0f3e4a4b2520b90eff7f459fddce 72 Gene3D G3DSA:1.10.260.40 8 72 9.2E-12 T 29-03-2018 CFE88_RS07230 623b0f3e4a4b2520b90eff7f459fddce 72 Pfam PF01381 Helix-turn-helix 12 63 1.5E-9 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS07230 623b0f3e4a4b2520b90eff7f459fddce 72 SUPERFAMILY SSF47413 9 65 2.6E-12 T 29-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 CFE88_RS07230 623b0f3e4a4b2520b90eff7f459fddce 72 SMART SM00530 8 63 1.0E-5 T 29-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CFE88_RS00045 676a5da3d31b7736c067582810168cbf 533 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 13 529 9.3E-154 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CFE88_RS00045 676a5da3d31b7736c067582810168cbf 533 Pfam PF02652 L-lactate permease 14 528 9.8E-159 T 29-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CFE88_RS11815 118c1d68fa61170a9149168ffbaf585a 257 SUPERFAMILY SSF81301 6 86 3.27E-7 T 29-03-2018 CFE88_RS11815 118c1d68fa61170a9149168ffbaf585a 257 Gene3D G3DSA:3.30.460.10 7 130 3.9E-16 T 29-03-2018 CFE88_RS11815 118c1d68fa61170a9149168ffbaf585a 257 Gene3D G3DSA:1.20.120.330 131 254 6.0E-5 T 29-03-2018 CFE88_RS07845 bcf74efc4db47b0a0a103e3d5fd85fec 185 SUPERFAMILY SSF55729 3 162 6.53E-34 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07845 bcf74efc4db47b0a0a103e3d5fd85fec 185 Gene3D G3DSA:3.40.630.30 6 181 6.3E-21 T 29-03-2018 CFE88_RS07845 bcf74efc4db47b0a0a103e3d5fd85fec 185 Pfam PF13302 Acetyltransferase (GNAT) domain 12 156 7.9E-26 T 29-03-2018 IPR000182 GNAT domain GO:0008080 CFE88_RS09820 c65a1cf3d438cfd68bdd1329ff22a153 266 Pfam PF12706 Beta-lactamase superfamily domain 47 220 8.7E-21 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09820 c65a1cf3d438cfd68bdd1329ff22a153 266 SUPERFAMILY SSF56281 11 231 7.73E-41 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09820 c65a1cf3d438cfd68bdd1329ff22a153 266 Gene3D G3DSA:3.60.15.10 9 259 4.7E-34 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS09820 c65a1cf3d438cfd68bdd1329ff22a153 266 SMART SM00849 15 220 1.0E-9 T 29-03-2018 IPR001279 Metallo-beta-lactamase CFE88_RS10490 2d84887f23210aa36551fd70f160e179 436 Pfam PF07690 Major Facilitator Superfamily 36 393 4.0E-19 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS10490 2d84887f23210aa36551fd70f160e179 436 Gene3D G3DSA:1.20.1250.20 233 431 2.1E-12 T 29-03-2018 CFE88_RS10490 2d84887f23210aa36551fd70f160e179 436 Gene3D G3DSA:1.20.1250.20 20 223 3.9E-17 T 29-03-2018 CFE88_RS10490 2d84887f23210aa36551fd70f160e179 436 SUPERFAMILY SSF103473 33 426 3.53E-33 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS10680 1fb1654b2b601d021b98928d57673a69 688 Pfam PF04650 YSIRK type signal peptide 4 27 2.1E-11 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS10680 1fb1654b2b601d021b98928d57673a69 688 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 3 38 5.3E-15 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS10680 1fb1654b2b601d021b98928d57673a69 688 Gene3D G3DSA:3.40.50.1820 300 688 2.7E-98 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS10680 1fb1654b2b601d021b98928d57673a69 688 SUPERFAMILY SSF53474 309 672 2.77E-47 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 Pfam PF02388 FemAB family 6 409 3.6E-140 T 29-03-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 Gene3D G3DSA:3.40.630.30 168 386 1.7E-35 T 29-03-2018 CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 Gene3D G3DSA:3.40.630.30 1 167 5.2E-30 T 29-03-2018 CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 SUPERFAMILY SSF55729 169 244 1.09E-32 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 SUPERFAMILY SSF55729 307 406 1.09E-32 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS04350 9843e38ef64f865798c567aabfbda67a 417 SUPERFAMILY SSF55729 1 164 2.22E-47 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS06765 cf26740bdc78dbecca56bf5a78982a20 142 TIGRFAM TIGR00943 2a6301s02: monovalent cation:proton antiporter 28 134 2.6E-44 T 29-03-2018 IPR005281 Monovalent cation:proton antiporter, subunit B GO:0006812|GO:0008324|GO:0016021 CFE88_RS06765 cf26740bdc78dbecca56bf5a78982a20 142 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 11 133 4.0E-29 T 29-03-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 258 275 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 140 155 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 34 50 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 57 74 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 293 308 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 77 95 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 196 213 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 360 376 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 162 179 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 PRINTS PR01758 Capsule biosynthesis protein CapB signature 111 126 6.0E-68 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 Pfam PF08245 Mur ligase middle domain 37 196 6.9E-10 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 Gene3D G3DSA:3.40.1190.10 31 243 2.9E-16 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 SUPERFAMILY SSF53623 104 236 1.19E-16 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 SUPERFAMILY SSF53623 32 75 1.19E-16 T 29-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 CFE88_RS11615 70308c0051103c63bb792536a35c1ce1 385 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 3 381 4.1E-167 T 29-03-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 CFE88_RS00390 28c89c00133b8c5d3ae9568f6447ec43 257 Pfam PF05257 CHAP domain 154 232 1.4E-13 T 29-03-2018 IPR007921 CHAP domain CFE88_RS00390 28c89c00133b8c5d3ae9568f6447ec43 257 SUPERFAMILY SSF54001 145 256 1.28E-11 T 29-03-2018 CFE88_RS03780 3e2402e5a8fb4378f91a5556541e20ee 174 Gene3D G3DSA:1.10.3450.10 2 124 4.3E-23 T 29-03-2018 IPR023203 TTHA0068-like domain CFE88_RS03780 3e2402e5a8fb4378f91a5556541e20ee 174 SUPERFAMILY SSF140663 2 119 2.62E-21 T 29-03-2018 IPR023203 TTHA0068-like domain CFE88_RS03780 3e2402e5a8fb4378f91a5556541e20ee 174 Pfam PF03745 Domain of unknown function (DUF309) 7 64 3.7E-17 T 29-03-2018 IPR005500 Protein of unknown function DUF309 CFE88_RS08300 95645a30f0d4340babc1f1ccb8acd4de 279 Hamap MF_02119 Lipoyl-[GcvH]:protein N-lipoyltransferase [lipL]. 6 275 46.821 T 29-03-2018 IPR024897 Octanoyltransferase LipL GO:0009107|GO:0009249|GO:0016415 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|MetaCyc: PWY-6987 CFE88_RS08300 95645a30f0d4340babc1f1ccb8acd4de 279 Pfam PF03099 Biotin/lipoate A/B protein ligase family 76 180 4.6E-13 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CFE88_RS08300 95645a30f0d4340babc1f1ccb8acd4de 279 Gene3D G3DSA:3.30.930.10 4 269 2.7E-33 T 29-03-2018 CFE88_RS08300 95645a30f0d4340babc1f1ccb8acd4de 279 SUPERFAMILY SSF55681 6 267 7.21E-63 T 29-03-2018 CFE88_RS02230 52c2798b550ccfc56b2e57f9984334be 160 Pfam PF13751 Transposase DDE domain 4 130 2.8E-23 T 29-03-2018 IPR025668 Transposase DDE domain CFE88_RS06980 c37b0fcc7d2397a49a30993e90d9818a 270 SUPERFAMILY SSF53850 29 269 1.61E-76 T 29-03-2018 CFE88_RS06980 c37b0fcc7d2397a49a30993e90d9818a 270 PIRSF PIRSF002854 1 270 5.3E-93 T 29-03-2018 IPR004872 Lipoprotein NlpA family CFE88_RS06980 c37b0fcc7d2397a49a30993e90d9818a 270 Gene3D G3DSA:3.40.190.10 140 270 1.4E-40 T 29-03-2018 CFE88_RS06980 c37b0fcc7d2397a49a30993e90d9818a 270 Gene3D G3DSA:3.40.190.10 29 139 8.4E-37 T 29-03-2018 CFE88_RS06980 c37b0fcc7d2397a49a30993e90d9818a 270 Pfam PF03180 NLPA lipoprotein 30 269 9.3E-85 T 29-03-2018 IPR004872 Lipoprotein NlpA family CFE88_RS00920 14f6100284b30042226a5fd29ffa7026 396 SUPERFAMILY SSF53448 5 392 1.69E-116 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS00920 14f6100284b30042226a5fd29ffa7026 396 Pfam PF01704 UTP--glucose-1-phosphate uridylyltransferase 58 376 5.0E-39 T 29-03-2018 IPR002618 UDPGP family GO:0008152|GO:0070569 CFE88_RS00920 14f6100284b30042226a5fd29ffa7026 396 Gene3D G3DSA:3.90.550.10 3 393 1.8E-101 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS07310 a48d4b6a8ae139d5ab0fded743e384ac 216 Pfam PF16228 Domain of unknown function (DUF4887) 34 205 3.3E-54 T 29-03-2018 IPR032615 Protein of unknown function DUF4887 CFE88_RS03835 603be997e8fb10ffe17a3b3f4a86e389 471 Pfam PF01476 LysM domain 429 470 5.9E-7 T 29-03-2018 IPR018392 LysM domain CFE88_RS03835 603be997e8fb10ffe17a3b3f4a86e389 471 SMART SM00257 422 470 0.0087 T 29-03-2018 IPR018392 LysM domain CFE88_RS03835 603be997e8fb10ffe17a3b3f4a86e389 471 Gene3D G3DSA:3.10.350.10 419 471 1.6E-9 T 29-03-2018 CFE88_RS03835 603be997e8fb10ffe17a3b3f4a86e389 471 SUPERFAMILY SSF54106 422 470 3.79E-6 T 29-03-2018 IPR018392 LysM domain CFE88_RS11415 d3024a9e9bb620b1163b7d29a6d0c543 238 Pfam PF02677 Uncharacterized BCR, COG1636 38 217 2.0E-62 T 29-03-2018 IPR003828 Probable epoxyqueuosine reductase QueH CFE88_RS11415 d3024a9e9bb620b1163b7d29a6d0c543 238 Gene3D G3DSA:3.40.50.620 48 173 1.3E-4 T 29-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CFE88_RS03990 ad06689ec8d7c73a31561f263c199ec1 188 Gene3D G3DSA:3.40.50.450 1 181 1.6E-32 T 29-03-2018 CFE88_RS03990 ad06689ec8d7c73a31561f263c199ec1 188 Hamap MF_01575 UPF0398 protein . 2 178 33.911 T 29-03-2018 IPR010697 Protein of unknown function DUF1273 CFE88_RS03990 ad06689ec8d7c73a31561f263c199ec1 188 PIRSF PIRSF021290 2 180 3.9E-71 T 29-03-2018 IPR010697 Protein of unknown function DUF1273 CFE88_RS03990 ad06689ec8d7c73a31561f263c199ec1 188 SUPERFAMILY SSF102405 3 177 4.94E-61 T 29-03-2018 CFE88_RS03990 ad06689ec8d7c73a31561f263c199ec1 188 Pfam PF06908 Protein of unknown function (DUF1273) 5 172 2.0E-66 T 29-03-2018 IPR010697 Protein of unknown function DUF1273 CFE88_RS00550 561085875582cf576a4fa9d4b999a7cb 143 Pfam PF13463 Winged helix DNA-binding domain 34 95 3.0E-7 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS00550 561085875582cf576a4fa9d4b999a7cb 143 SUPERFAMILY SSF46785 4 138 3.83E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00550 561085875582cf576a4fa9d4b999a7cb 143 Gene3D G3DSA:1.10.10.10 3 143 6.2E-15 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00550 561085875582cf576a4fa9d4b999a7cb 143 SMART SM00347 23 124 1.1E-10 T 29-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CFE88_RS00205 be63d849d66e34f5884118b552603c89 382 Pfam PF02517 CAAX protease self-immunity 120 213 3.3E-5 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS00205 be63d849d66e34f5884118b552603c89 382 SUPERFAMILY SSF103473 5 268 3.14E-5 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS03600 b901b2e18bdec420ec145054bbfc1f93 276 Pfam PF03099 Biotin/lipoate A/B protein ligase family 51 188 5.0E-28 T 29-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 CFE88_RS03600 b901b2e18bdec420ec145054bbfc1f93 276 Gene3D G3DSA:3.30.930.10 2 276 6.2E-57 T 29-03-2018 CFE88_RS03600 b901b2e18bdec420ec145054bbfc1f93 276 Hamap MF_02118 Octanoyltransferase LipM [lipM]. 2 276 65.673 T 29-03-2018 IPR024898 Octanoyltransferase LipM GO:0009107|GO:0009249|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CFE88_RS03600 b901b2e18bdec420ec145054bbfc1f93 276 SUPERFAMILY SSF55681 2 274 3.15E-64 T 29-03-2018 CFE88_RS00260 fd5e36695adffb1308293843abd64f4f 211 SUPERFAMILY SSF56784 1 202 7.46E-43 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS00260 fd5e36695adffb1308293843abd64f4f 211 Gene3D G3DSA:3.40.50.1000 1 202 1.8E-35 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS00260 fd5e36695adffb1308293843abd64f4f 211 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 4 178 1.4E-16 T 29-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 CFE88_RS00260 fd5e36695adffb1308293843abd64f4f 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 177 2.3E-31 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12230 30717cadc911d7dffb3c57611776d19d 150 Gene3D G3DSA:3.30.450.40 10 147 1.3E-10 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS12230 30717cadc911d7dffb3c57611776d19d 150 SUPERFAMILY SSF55781 11 130 2.18E-10 T 29-03-2018 IPR029016 GAF domain-like CFE88_RS10090 4c3deefaca6251f05941153bf17170d7 496 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 8 494 1.5E-211 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS10090 4c3deefaca6251f05941153bf17170d7 496 Gene3D G3DSA:3.50.50.60 2 440 3.8E-19 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10090 4c3deefaca6251f05941153bf17170d7 496 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 5 494 48.601 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS10090 4c3deefaca6251f05941153bf17170d7 496 SUPERFAMILY SSF51905 7 276 5.7E-24 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS10090 4c3deefaca6251f05941153bf17170d7 496 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 10 492 3.9E-183 T 29-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CFE88_RS06740 105d896888d5b92856029d742ca5895a 375 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 340 3.6E-71 T 29-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CFE88_RS06740 105d896888d5b92856029d742ca5895a 375 Gene3D G3DSA:3.20.20.70 3 364 3.2E-86 T 29-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CFE88_RS06740 105d896888d5b92856029d742ca5895a 375 SUPERFAMILY SSF51395 1 360 5.36E-85 T 29-03-2018 CFE88_RS00165 b964825ed10869d1ed72d3cdb64eade1 267 Gene3D G3DSA:1.20.58.440 22 102 0.0012 T 29-03-2018 CFE88_RS00165 b964825ed10869d1ed72d3cdb64eade1 267 Pfam PF13349 Putative adhesin 52 267 1.6E-19 T 29-03-2018 IPR025164 Putative adhesin CFE88_RS10925 b5439a14a62476fbca3b0fb6171d1232 1016 Gene3D G3DSA:3.40.1710.10 42 202 6.7E-20 T 29-03-2018 CFE88_RS10925 b5439a14a62476fbca3b0fb6171d1232 1016 Gene3D G3DSA:1.10.287.950 700 890 7.2E-6 T 29-03-2018 CFE88_RS10925 b5439a14a62476fbca3b0fb6171d1232 1016 TIGRFAM TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA 12 208 1.3E-65 T 29-03-2018 IPR023838 Type VII secretion system EsaA GO:0016021 CFE88_RS08575 266f5c2f78449fc68840267b22738908 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 12 144 0.001 T 29-03-2018 CFE88_RS08575 266f5c2f78449fc68840267b22738908 166 SUPERFAMILY SSF160369 5 160 1.83E-53 T 29-03-2018 CFE88_RS08575 266f5c2f78449fc68840267b22738908 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 28.58 T 29-03-2018 IPR022973 Ribosomal protein L10 CFE88_RS08575 266f5c2f78449fc68840267b22738908 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 29-03-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CFE88_RS08575 266f5c2f78449fc68840267b22738908 166 Pfam PF00466 Ribosomal protein L10 6 101 1.8E-29 T 29-03-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 CFE88_RS11000 84237b7efaa20f57e88ec80d62fddc99 126 Gene3D G3DSA:1.10.287.510 4 126 4.6E-5 T 29-03-2018 CFE88_RS11000 84237b7efaa20f57e88ec80d62fddc99 126 Pfam PF16888 Domain of unknown function (DUF5082) 5 117 1.0E-8 T 29-03-2018 IPR031681 Protein of unknown function DUF5082 CFE88_RS07920 b527d0da40dccbd313c32cd8131bf79c 219 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 25 213 1.4E-18 T 29-03-2018 IPR006214 Bax inhibitor 1-related CFE88_RS00335 e236be9d9866ace171a959e64b13b5fd 156 Pfam PF07849 Protein of unknown function (DUF1641) 119 153 4.6E-6 T 29-03-2018 IPR012440 Protein of unknown function DUF1641 CFE88_RS04745 21b1db62ea7c7caaf2f6a8c17b6ba9a6 114 Pfam PF12363 Phage tail assembly chaperone protein, TAC 7 112 1.5E-25 T 29-03-2018 IPR024410 Phage tail assembly chaperone protein, TAC CFE88_RS07710 790256a070115cefe24fd2d79c7899d8 225 Gene3D G3DSA:1.10.10.10 5 71 9.1E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS07710 790256a070115cefe24fd2d79c7899d8 225 Pfam PF13610 DDE domain 73 204 6.7E-39 T 29-03-2018 IPR032874 DDE domain CFE88_RS07710 790256a070115cefe24fd2d79c7899d8 225 SUPERFAMILY SSF53098 70 217 4.3E-10 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS07710 790256a070115cefe24fd2d79c7899d8 225 Gene3D G3DSA:3.30.420.10 72 221 4.4E-16 T 29-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 CFE88_RS10275 4a74a962b6f8d8e93d5684964e35d6d0 229 SMART SM00382 26 204 3.4E-10 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS10275 4a74a962b6f8d8e93d5684964e35d6d0 229 SUPERFAMILY SSF52540 2 202 1.71E-51 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS10275 4a74a962b6f8d8e93d5684964e35d6d0 229 Pfam PF00005 ABC transporter 18 155 2.3E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS10275 4a74a962b6f8d8e93d5684964e35d6d0 229 Gene3D G3DSA:3.40.50.300 1 213 1.4E-56 T 29-03-2018 CFE88_RS01120 401e213ba8d6b2c0714055bb855d5353 221 Pfam PF11042 Protein of unknown function (DUF2750) 116 218 1.0E-23 T 29-03-2018 IPR021284 Protein of unknown function DUF2750 CFE88_RS04040 418342cf5685bdee1e00f712d2a13071 64 Pfam PF10782 Zinc-finger 8 64 1.3E-28 T 29-03-2018 IPR019718 Protein of unknown function DUF2602 CFE88_RS00410 34a1c9295b69a5257ab601974fc121eb 114 TIGRFAM TIGR01889 Staph_reg_Sar: staphylococcal accessory regulator family 8 114 4.0E-30 T 29-03-2018 IPR010166 Transcriptional regulator SarA/Rot GO:0006355 CFE88_RS00410 34a1c9295b69a5257ab601974fc121eb 114 Gene3D G3DSA:1.10.10.10 1 84 1.6E-13 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00410 34a1c9295b69a5257ab601974fc121eb 114 SUPERFAMILY SSF46785 9 111 3.46E-20 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00090 0a1af5fb8e93499f2293c33dc098d998 462 Pfam PF13240 zinc-ribbon domain 4 22 6.7E-6 T 29-03-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 CFE88_RS00090 0a1af5fb8e93499f2293c33dc098d998 462 Gene3D G3DSA:2.20.20.30 1 25 7.0E-5 T 29-03-2018 CFE88_RS00090 0a1af5fb8e93499f2293c33dc098d998 462 PIRSF PIRSF032522 1 461 1.5E-175 T 29-03-2018 IPR023599 Membrane-associated protein TcaA GO:0016021|GO:0046677 CFE88_RS08410 53b0919111dd9418a2af64d1633d9663 221 Pfam PF02585 GlcNAc-PI de-N-acetylase 8 136 5.1E-26 T 29-03-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 CFE88_RS08410 53b0919111dd9418a2af64d1633d9663 221 Gene3D G3DSA:3.40.50.10320 2 213 2.4E-41 T 29-03-2018 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CFE88_RS08410 53b0919111dd9418a2af64d1633d9663 221 TIGRFAM TIGR04000 thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2 5 219 7.9E-103 T 29-03-2018 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 CFE88_RS08410 53b0919111dd9418a2af64d1633d9663 221 SUPERFAMILY SSF102588 4 218 4.45E-48 T 29-03-2018 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 CFE88_RS09545 5a17d8a04ad7bbeb367a68171ec40d6c 66 SUPERFAMILY SSF140652 2 65 2.04E-15 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS09545 5a17d8a04ad7bbeb367a68171ec40d6c 66 Gene3D G3DSA:1.10.150.260 1 66 3.8E-11 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS09545 5a17d8a04ad7bbeb367a68171ec40d6c 66 Pfam PF06855 YozE SAM-like fold 2 65 1.5E-15 T 29-03-2018 IPR023089 YozE SAM-like domain CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 Hamap MF_01556 Galactose-6-phosphate isomerase subunit LacB [lacB]. 1 171 46.907 T 29-03-2018 IPR004784 Galactose-6-phosphate isomerase subunit LacB GO:0005990|GO:0016861|GO:0050044 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 PIRSF PIRSF005384 1 148 1.9E-52 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 SUPERFAMILY SSF89623 1 150 7.59E-50 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 Gene3D G3DSA:3.40.1400.10 1 169 1.2E-55 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 TIGRFAM TIGR01119 lacB: galactose-6-phosphate isomerase, LacB subunit 1 171 1.3E-107 T 29-03-2018 IPR004784 Galactose-6-phosphate isomerase subunit LacB GO:0005990|GO:0016861|GO:0050044 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 Pfam PF02502 Ribose/Galactose Isomerase 3 141 3.9E-43 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS00800 fa1fd82b559aab7e3e40aa62f16d8b86 171 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 145 2.2E-38 T 29-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CFE88_RS05775 e3a49e70aad6018ebc994f56b41dc9c5 407 Pfam PF01098 Cell cycle protein 23 387 5.4E-94 T 29-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 CFE88_RS03105 4792844defd253ebc10ca40d9fd10dd8 150 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 3.5E-48 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CFE88_RS03105 4792844defd253ebc10ca40d9fd10dd8 150 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 143 6.0E-49 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CFE88_RS03105 4792844defd253ebc10ca40d9fd10dd8 150 Gene3D G3DSA:3.50.80.10 1 150 4.2E-49 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain CFE88_RS03105 4792844defd253ebc10ca40d9fd10dd8 150 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 30.367 T 29-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CFE88_RS03105 4792844defd253ebc10ca40d9fd10dd8 150 SUPERFAMILY SSF69500 1 143 1.23E-50 T 29-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 Gene3D G3DSA:1.10.3860.10 6 449 1.3E-85 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 SUPERFAMILY SSF118215 31 441 1.7E-87 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 PRINTS PR00173 Glutamate-aspartate symporter signature 76 96 7.2E-19 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 PRINTS PR00173 Glutamate-aspartate symporter signature 106 131 7.2E-19 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 PRINTS PR00173 Glutamate-aspartate symporter signature 233 252 7.2E-19 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 PRINTS PR00173 Glutamate-aspartate symporter signature 396 416 7.2E-19 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 PRINTS PR00173 Glutamate-aspartate symporter signature 369 388 7.2E-19 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09335 9802ff520093fd339ed9b025b9a26aa4 462 Pfam PF00375 Sodium:dicarboxylate symporter family 32 441 2.9E-99 T 29-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CFE88_RS09890 1e8b49fcfa34d76a82e91558ee66653f 113 PIRSF PIRSF029826 1 112 7.1E-39 T 29-03-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 CFE88_RS09890 1e8b49fcfa34d76a82e91558ee66653f 113 SUPERFAMILY SSF101386 4 111 2.47E-34 T 29-03-2018 CFE88_RS09890 1e8b49fcfa34d76a82e91558ee66653f 113 Pfam PF12643 MazG-like family 32 112 6.7E-26 T 29-03-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 CFE88_RS09890 1e8b49fcfa34d76a82e91558ee66653f 113 Gene3D G3DSA:1.10.4010.10 1 111 1.0E-21 T 29-03-2018 CFE88_RS06955 b763666cacceddd03707448f65d745ee 435 Pfam PF01458 Uncharacterized protein family (UPF0051) 184 408 3.7E-59 T 29-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CFE88_RS06955 b763666cacceddd03707448f65d745ee 435 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 150 424 1.0E-72 T 29-03-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 CFE88_RS06955 b763666cacceddd03707448f65d745ee 435 SUPERFAMILY SSF101960 12 433 1.44E-113 T 29-03-2018 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 SUPERFAMILY SSF55604 415 489 8.24E-22 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 Pfam PF02378 Phosphotransferase system, EIIC 10 316 1.2E-72 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 428 445 - T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 1 485 5.1E-206 T 29-03-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 377 475 6.1E-13 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 Gene3D G3DSA:3.30.1360.60 413 489 3.0E-27 T 29-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CFE88_RS02690 b0c3b5c4548fd906632ff867d74bf6c8 490 Pfam PF00367 phosphotransferase system, EIIB 417 450 1.5E-16 T 29-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 Gene3D G3DSA:1.10.10.630 180 258 3.1E-18 T 29-03-2018 IPR034829 DnaD-like domain CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 Pfam PF07261 Replication initiation and membrane attachment 186 260 4.5E-14 T 29-03-2018 IPR006343 DnaD domain CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 186 258 7.3E-21 T 29-03-2018 IPR006343 DnaD domain CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 Gene3D G3DSA:1.10.10.10 46 117 1.8E-7 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 SUPERFAMILY SSF158499 186 251 6.54E-14 T 29-03-2018 IPR006343 DnaD domain CFE88_RS04845 fafc44fff6c560051f6d4cab389cfe79 318 SUPERFAMILY SSF46785 56 109 1.71E-6 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS11955 df4cf5355b4cd790a031004db5508e64 223 SMART SM00382 30 212 1.4E-16 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS11955 df4cf5355b4cd790a031004db5508e64 223 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS11955 df4cf5355b4cd790a031004db5508e64 223 Pfam PF00005 ABC transporter 21 164 6.1E-32 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS11955 df4cf5355b4cd790a031004db5508e64 223 Gene3D G3DSA:3.40.50.300 3 220 7.1E-59 T 29-03-2018 CFE88_RS11955 df4cf5355b4cd790a031004db5508e64 223 SUPERFAMILY SSF52540 5 214 1.44E-57 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS06780 87b255020e677663ab6a44cd28537a46 159 Pfam PF01899 Na+/H+ ion antiporter subunit 9 156 1.4E-40 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CFE88_RS06780 87b255020e677663ab6a44cd28537a46 159 PIRSF PIRSF019239 1 159 2.1E-42 T 29-03-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CFE88_RS11250 ef12d2e6db412bfc54d17a0db4b67580 101 Gene3D G3DSA:1.20.120.350 1 101 1.3E-4 T 29-03-2018 CFE88_RS05740 309fc57f819dc81082841ec0f1bc0f65 308 Gene3D G3DSA:3.20.20.190 26 308 1.5E-50 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS05740 309fc57f819dc81082841ec0f1bc0f65 308 SUPERFAMILY SSF51695 47 303 3.66E-57 T 29-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 CFE88_RS05740 309fc57f819dc81082841ec0f1bc0f65 308 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 53 298 1.8E-28 T 29-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CFE88_RS06785 1fcc84870c5796370e9480d6879acc85 97 PIRSF PIRSF028784 2 93 5.1E-29 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CFE88_RS06785 1fcc84870c5796370e9480d6879acc85 97 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 32 83 3.0E-13 T 29-03-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 250 1.5E-58 T 29-03-2018 CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 SUPERFAMILY SSF51735 4 251 5.6E-73 T 29-03-2018 IPR016040 NAD(P)-binding domain CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.9E-31 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 Gene3D G3DSA:3.40.50.720 3 45 1.8E-6 T 29-03-2018 CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 Gene3D G3DSA:3.40.50.720 46 252 1.1E-52 T 29-03-2018 CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS08470 c497f217b3f11e434d2be7a769011061 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.0E-9 T 29-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CFE88_RS07450 e328fe249a005d8e7c30b27e5c45d06e 359 Pfam PF00953 Glycosyl transferase family 4 74 225 2.6E-41 T 29-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 CFE88_RS07450 e328fe249a005d8e7c30b27e5c45d06e 359 ProSitePatterns PS01348 MraY family signature 2. 145 156 - T 29-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CFE88_RS11010 a6d9812749e86abcb040d52ceb55efcf 124 Pfam PF14729 Domain of unknown function with cystatin-like fold (DUF4467) 29 122 8.3E-31 T 29-03-2018 IPR028075 Domain of unknown function with cystatin-like fold DUF4467 CFE88_RS07835 5104f120ac6c0290bcf4eefe9b00e8ba 149 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 147 4.0E-40 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 CFE88_RS07835 5104f120ac6c0290bcf4eefe9b00e8ba 149 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 3 149 29.349 T 29-03-2018 IPR003791 Protein of unknown function UPF0178 CFE88_RS06700 f42f676a34adbb7d671ca0201af991f4 191 Pfam PF09335 SNARE associated Golgi protein 34 151 2.1E-16 T 29-03-2018 IPR032816 SNARE associated Golgi protein CFE88_RS03260 af68d6f99eb04f8e113bc5acf7c30625 175 Pfam PF13419 Haloacid dehalogenase-like hydrolase 48 139 3.4E-8 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS03260 af68d6f99eb04f8e113bc5acf7c30625 175 Gene3D G3DSA:3.40.50.1000 18 155 1.6E-21 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS03260 af68d6f99eb04f8e113bc5acf7c30625 175 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 6 169 1.5E-48 T 29-03-2018 IPR010021 HAD-superfamily phosphatase, YqeG-like CFE88_RS03260 af68d6f99eb04f8e113bc5acf7c30625 175 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 31 141 2.4E-21 T 29-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CFE88_RS03260 af68d6f99eb04f8e113bc5acf7c30625 175 SUPERFAMILY SSF56784 17 153 1.73E-23 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS12420 002d28003446722562472b9558470b62 708 Gene3D G3DSA:3.40.50.300 423 530 4.0E-4 T 29-03-2018 CFE88_RS05655 98d506a35a15012814ba9ede12686403 173 Pfam PF02674 Colicin V production protein 3 162 1.5E-24 T 29-03-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 CFE88_RS10315 ddf996d842f6f1767cb4b7cb0d9cd3ab 430 Pfam PF10100 Staphylopine dehydrogenase 3 425 6.0E-192 T 29-03-2018 IPR016935 Staphylopine dehydrogenase CFE88_RS10315 ddf996d842f6f1767cb4b7cb0d9cd3ab 430 Gene3D G3DSA:3.40.50.720 1 183 3.1E-6 T 29-03-2018 CFE88_RS10315 ddf996d842f6f1767cb4b7cb0d9cd3ab 430 PIRSF PIRSF029692 1 430 1.3E-210 T 29-03-2018 IPR016935 Staphylopine dehydrogenase CFE88_RS12405 05cf9be47656fcfbe8cdb8d04c0b70d0 82 Gene3D G3DSA:2.10.260.10 7 48 1.5E-10 T 29-03-2018 CFE88_RS12405 05cf9be47656fcfbe8cdb8d04c0b70d0 82 SUPERFAMILY SSF89447 7 63 1.4E-8 T 29-03-2018 CFE88_RS12330 05cf9be47656fcfbe8cdb8d04c0b70d0 82 Gene3D G3DSA:2.10.260.10 7 48 1.5E-10 T 29-03-2018 CFE88_RS12330 05cf9be47656fcfbe8cdb8d04c0b70d0 82 SUPERFAMILY SSF89447 7 63 1.4E-8 T 29-03-2018 CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 29-03-2018 CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 262 7.6E-61 T 29-03-2018 IPR000150 Cof family GO:0016787 CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 SUPERFAMILY SSF56784 1 266 2.18E-67 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 235 2.7E-25 T 29-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 Gene3D G3DSA:3.40.50.1000 1 272 5.7E-37 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS06660 058bc1ca4df2354e6c0adec704ae5eea 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 262 4.9E-64 T 29-03-2018 IPR023214 HAD-like domain CFE88_RS01685 63839fc2de5cd684dddd5317f5628f61 219 Pfam PF13346 ABC-2 family transporter protein 3 217 3.4E-14 T 29-03-2018 IPR025699 ABC-2 membrane transporter-like CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 Pfam PF14102 Capsule biosynthesis CapC 12 129 1.4E-40 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 3.2E-37 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 20 37 3.2E-37 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 66 80 3.2E-37 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 88 101 3.2E-37 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 2 17 3.2E-37 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS11620 74b6ec10ad6d869e9735661481961302 150 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 11 140 3.8E-44 T 29-03-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 CFE88_RS08830 5c691b27018e79cd6aeaf4dbdc610d20 133 Pfam PF04977 Septum formation initiator 41 118 4.6E-18 T 29-03-2018 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 CFE88_RS04205 19098b910081cc080e20237469be8c99 208 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 8 197 1.3E-64 T 29-03-2018 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein CFE88_RS09975 355b2cf548201496b5f38e6653935fb3 86 Pfam PF02583 Metal-sensitive transcriptional repressor 4 82 1.4E-22 T 29-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CFE88_RS04805 fbf2d9e3198265a7f761334eb8f7febf 424 Pfam PF17288 Terminase RNAseH like domain 259 401 1.7E-33 T 29-03-2018 IPR035413 Phage terminase large subunit, C-terminal CFE88_RS04805 fbf2d9e3198265a7f761334eb8f7febf 424 TIGRFAM TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family 29 402 1.3E-92 T 29-03-2018 IPR006437 Bacteriophage terminase, large subunit GO:0006323 CFE88_RS04805 fbf2d9e3198265a7f761334eb8f7febf 424 Pfam PF04466 Phage terminase large subunit 28 227 3.6E-63 T 29-03-2018 IPR035412 Phage terminase large subunit, N-terminal CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 SUPERFAMILY SSF101821 75 182 1.04E-26 T 29-03-2018 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 Pfam PF05343 M42 glutamyl aminopeptidase 50 339 3.6E-98 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 Gene3D G3DSA:2.40.30.40 75 160 2.7E-24 T 29-03-2018 IPR023367 Peptidase M42, domain 2 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 Gene3D G3DSA:3.40.630.10 161 219 3.6E-8 T 29-03-2018 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 Gene3D G3DSA:3.40.630.10 220 347 9.0E-29 T 29-03-2018 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 PIRSF PIRSF001123 5 358 1.1E-135 T 29-03-2018 IPR008007 Peptidase M42 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 SUPERFAMILY SSF53187 8 85 3.26E-65 T 29-03-2018 CFE88_RS02615 5ebe44ec472b047353a4c8235c5ec9da 361 SUPERFAMILY SSF53187 174 353 3.26E-65 T 29-03-2018 CFE88_RS05765 baff76626b95359f70d6af35034608fd 302 Hamap MF_01664 Heme A synthase [ctaA]. 3 302 27.505 T 29-03-2018 IPR023755 Heme A synthase, type 1 GO:0006784|GO:0016020|GO:0016627|GO:0055114 CFE88_RS05765 baff76626b95359f70d6af35034608fd 302 Pfam PF02628 Cytochrome oxidase assembly protein 9 286 2.0E-30 T 29-03-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 CFE88_RS10720 ae420579879ea71fa0696bb3f45a7947 266 SUPERFAMILY SSF161098 71 258 1.44E-32 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10720 ae420579879ea71fa0696bb3f45a7947 266 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 17 265 3.5E-91 T 29-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 CFE88_RS10720 ae420579879ea71fa0696bb3f45a7947 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 255 3.5E-12 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS10720 ae420579879ea71fa0696bb3f45a7947 266 Gene3D G3DSA:1.10.3720.10 18 266 9.5E-23 T 29-03-2018 CFE88_RS09895 5d82a93bba3a3adaec9265e71231f74e 259 Pfam PF04507 Csa1 family 2 257 7.6E-132 T 29-03-2018 IPR007595 Csa1 family CFE88_RS09895 5d82a93bba3a3adaec9265e71231f74e 259 TIGRFAM TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins 2 255 8.9E-108 T 29-03-2018 IPR007595 Csa1 family CFE88_RS00870 c9e8b3c519ad6b24d21acf9952962766 393 SUPERFAMILY SSF103473 5 383 7.46E-33 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS00870 c9e8b3c519ad6b24d21acf9952962766 393 Gene3D G3DSA:1.20.1250.20 4 190 1.9E-13 T 29-03-2018 CFE88_RS00870 c9e8b3c519ad6b24d21acf9952962766 393 Gene3D G3DSA:1.20.1250.20 209 393 8.8E-12 T 29-03-2018 CFE88_RS00870 c9e8b3c519ad6b24d21acf9952962766 393 Pfam PF05977 Transmembrane secretion effector 10 391 1.6E-37 T 29-03-2018 IPR010290 Transmembrane secretion effector CFE88_RS04480 45eede63c559806d41208afd340f5e0e 546 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 502 2.0E-155 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS04480 45eede63c559806d41208afd340f5e0e 546 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 501 2.8E-185 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS11560 4eb57955d5688e0f1be98197ee1b4cb4 130 Pfam PF03788 LrgA family 22 113 2.5E-23 T 29-03-2018 IPR005538 LrgA/CidA family GO:0016021 CFE88_RS11560 4eb57955d5688e0f1be98197ee1b4cb4 130 Hamap MF_01143 Holin-like protein CidA [cidA]. 4 122 21.614 T 29-03-2018 IPR023760 Holin-like protein CidA GO:0016021 CFE88_RS06945 d8349402e4769e1c8915a262942ab71c 154 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 6 138 1.2E-54 T 29-03-2018 CFE88_RS06945 d8349402e4769e1c8915a262942ab71c 154 Gene3D G3DSA:3.90.1010.10 3 140 2.6E-52 T 29-03-2018 CFE88_RS06945 d8349402e4769e1c8915a262942ab71c 154 SUPERFAMILY SSF82649 3 138 5.86E-51 T 29-03-2018 CFE88_RS06945 d8349402e4769e1c8915a262942ab71c 154 Pfam PF01592 NifU-like N terminal domain 10 128 2.3E-33 T 29-03-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CFE88_RS11600 c6dc08c0e4abfc190b87224f15b3bc6a 287 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 18 220 5.6E-58 T 29-03-2018 IPR003740 Uncharacterised membrane protein YitT CFE88_RS11600 c6dc08c0e4abfc190b87224f15b3bc6a 287 PIRSF PIRSF006483 1 287 1.3E-78 T 29-03-2018 IPR003740 Uncharacterised membrane protein YitT CFE88_RS11600 c6dc08c0e4abfc190b87224f15b3bc6a 287 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 226 280 6.0E-19 T 29-03-2018 IPR019264 Domain of unknown function DUF2179 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 Gene3D G3DSA:3.30.700.10 13 105 4.9E-10 T 29-03-2018 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 PIRSF PIRSF029928 1 105 1.8E-38 T 29-03-2018 IPR016940 ComG operon protein C GO:0030420 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 SUPERFAMILY SSF54523 13 76 1.05E-13 T 29-03-2018 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 32 4.6E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 1.2E-7 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 1.2E-7 T 29-03-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CFE88_RS03545 2a9081d579641ede9b5a49e6f26c298c 105 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 32 7.9E-5 T 29-03-2018 IPR012902 Prokaryotic N-terminal methylation site CFE88_RS09620 74081bf5d053a16ecf9e79f42f0abc84 681 TIGRFAM TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family 2 39 9.0E-12 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS09620 74081bf5d053a16ecf9e79f42f0abc84 681 Pfam PF04650 YSIRK type signal peptide 6 29 3.7E-7 T 29-03-2018 IPR005877 YSIRK Gram-positive signal peptide GO:0016020 CFE88_RS09620 74081bf5d053a16ecf9e79f42f0abc84 681 Gene3D G3DSA:3.40.50.1820 289 680 1.4E-97 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS09620 74081bf5d053a16ecf9e79f42f0abc84 681 SUPERFAMILY SSF53474 298 672 9.79E-48 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS07690 9057e28f41599e9412b0c25385d26fd0 368 SUPERFAMILY SSF53448 1 257 7.78E-30 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS07690 9057e28f41599e9412b0c25385d26fd0 368 Pfam PF00535 Glycosyl transferase family 2 5 171 8.0E-25 T 29-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CFE88_RS07690 9057e28f41599e9412b0c25385d26fd0 368 Gene3D G3DSA:3.90.550.10 1 365 1.1E-22 T 29-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases CFE88_RS06510 acfc4c7400da4ad3e28cfd9261bf0604 205 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 5 204 9.5E-51 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06510 acfc4c7400da4ad3e28cfd9261bf0604 205 Pfam PF04276 Protein of unknown function (DUF443) 10 204 1.3E-55 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS01815 d16b42dae353fc404b015bc245793111 402 Pfam PF07537 CamS sex pheromone cAM373 precursor 63 394 8.2E-115 T 29-03-2018 IPR011426 CamS sex pheromone cAM373 CFE88_RS01815 d16b42dae353fc404b015bc245793111 402 PIRSF PIRSF012509 1 401 6.0E-151 T 29-03-2018 IPR011426 CamS sex pheromone cAM373 CFE88_RS01815 d16b42dae353fc404b015bc245793111 402 Gene3D G3DSA:3.10.570.10 42 401 2.5E-118 T 29-03-2018 CFE88_RS03205 bea53c5ffc5a08f08f3591a1270cb2d3 307 Pfam PF01136 Peptidase family U32 72 304 5.6E-64 T 29-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CFE88_RS11805 e2c6bad9b71c26cfa12c2c369c8baa39 137 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 87 136 1.3E-10 T 29-03-2018 IPR018691 Protein of unknown function DUF2188 CFE88_RS00440 16539e3f691c4310245e2bad0cb679bc 133 SUPERFAMILY SSF51278 1 111 8.63E-49 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00440 16539e3f691c4310245e2bad0cb679bc 133 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.185 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00440 16539e3f691c4310245e2bad0cb679bc 133 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 103 1.8E-47 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00440 16539e3f691c4310245e2bad0cb679bc 133 Pfam PF00699 Urease beta subunit 3 99 2.6E-45 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS00440 16539e3f691c4310245e2bad0cb679bc 133 Gene3D G3DSA:2.10.150.10 1 101 2.2E-46 T 29-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 SUPERFAMILY SSF54373 305 412 2.55E-29 T 29-03-2018 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 3 463 2.1E-118 T 29-03-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 SUPERFAMILY SSF51905 430 462 4.53E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 SUPERFAMILY SSF51905 3 320 4.53E-51 T 29-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 Gene3D G3DSA:3.40.50.720 1 90 1.2E-7 T 29-03-2018 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 Gene3D G3DSA:3.90.660.20 216 412 7.7E-38 T 29-03-2018 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 Gene3D G3DSA:1.10.3110.10 107 204 7.2E-28 T 29-03-2018 CFE88_RS02335 9fbe317b085869f1e02e24ac8c73b7d2 465 Pfam PF01593 Flavin containing amine oxidoreductase 12 462 2.5E-58 T 29-03-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 CFE88_RS03560 911c366b4844968e56abdb52b2035609 123 Pfam PF15980 Putative Competence protein ComGF 16 112 4.1E-16 T 29-03-2018 IPR016977 Competence operon G, ComGF CFE88_RS05500 973437821a41a2f08353bdb1d402085b 197 Hamap MF_01197 Cell division protein SepF [sepF]. 1 189 19.867 T 29-03-2018 IPR023052 Cell division protein SepF GO:0090529 CFE88_RS05500 973437821a41a2f08353bdb1d402085b 197 Pfam PF04472 Cell division protein SepF 111 181 7.7E-28 T 29-03-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 CFE88_RS07155 52fd25c21eea558d46486834f9c74673 84 Pfam PF11300 Protein of unknown function (DUF3102) 1 50 1.8E-8 T 29-03-2018 IPR021451 Protein of unknown function DUF3102 CFE88_RS11440 3f3885ee6e130d077b7347ed63ea9f50 352 Pfam PF13303 Phosphotransferase system, EIIC 16 347 8.2E-93 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS03475 10258ebe7d28f724f79d79aca8fc56b6 282 SUPERFAMILY SSF81345 4 267 1.24E-34 T 29-03-2018 IPR029022 ABC transporter, BtuC-like CFE88_RS03475 10258ebe7d28f724f79d79aca8fc56b6 282 Pfam PF00950 ABC 3 transport family 8 269 5.1E-56 T 29-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CFE88_RS03475 10258ebe7d28f724f79d79aca8fc56b6 282 Gene3D G3DSA:1.10.3470.10 3 277 3.7E-23 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS06250 873be0ea96b0efc686e8cbd512a97f5c 452 Pfam PF02386 Cation transport protein 42 434 1.5E-63 T 29-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CFE88_RS10940 a9ed1f4afe7be31f0c5fe130754d5b3b 441 Gene3D G3DSA:3.80.10.10 42 441 1.1E-7 T 29-03-2018 IPR032675 Leucine-rich repeat domain, L domain-like CFE88_RS10940 a9ed1f4afe7be31f0c5fe130754d5b3b 441 Pfam PF10140 WXG100 protein secretion system (Wss), protein YukC 33 389 2.7E-107 T 29-03-2018 IPR018778 Type VII secretion system EssB CFE88_RS10940 a9ed1f4afe7be31f0c5fe130754d5b3b 441 TIGRFAM TIGR03926 T7_EssB: type VII secretion protein EssB 31 390 1.6E-117 T 29-03-2018 IPR018778 Type VII secretion system EssB CFE88_RS07505 845bc0173a4a5240f170c449ac807049 347 Pfam PF01497 Periplasmic binding protein 75 319 5.6E-34 T 29-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 CFE88_RS07505 845bc0173a4a5240f170c449ac807049 347 SUPERFAMILY SSF53807 63 333 1.18E-59 T 29-03-2018 CFE88_RS07505 845bc0173a4a5240f170c449ac807049 347 Gene3D G3DSA:3.40.50.1980 26 182 2.0E-28 T 29-03-2018 CFE88_RS07505 845bc0173a4a5240f170c449ac807049 347 Gene3D G3DSA:3.40.50.1980 183 344 7.1E-33 T 29-03-2018 CFE88_RS01590 c34ec3962899bd9ab9c9bb54e24bbf5b 429 Pfam PF14501 GHKL domain 321 424 5.4E-16 T 29-03-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain CFE88_RS01590 c34ec3962899bd9ab9c9bb54e24bbf5b 429 Gene3D G3DSA:1.10.287.130 211 271 1.7E-9 T 29-03-2018 CFE88_RS01590 c34ec3962899bd9ab9c9bb54e24bbf5b 429 Gene3D G3DSA:3.30.565.10 275 408 3.3E-15 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS01590 c34ec3962899bd9ab9c9bb54e24bbf5b 429 SUPERFAMILY SSF55874 291 417 9.21E-11 T 29-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain CFE88_RS10570 2ba381d1a38abbb74979bf97fd139981 530 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 12 498 1.1E-182 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS10570 2ba381d1a38abbb74979bf97fd139981 530 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 50 498 1.2E-144 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS10570 2ba381d1a38abbb74979bf97fd139981 530 Gene3D G3DSA:1.20.120.350 34 497 0.0049 T 29-03-2018 CFE88_RS02870 5d51905e24a6d476c4a951ba320a30fc 203 Gene3D G3DSA:3.40.50.300 2 202 8.7E-44 T 29-03-2018 CFE88_RS02870 5d51905e24a6d476c4a951ba320a30fc 203 Pfam PF01121 Dephospho-CoA kinase 4 179 9.4E-57 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CFE88_RS02870 5d51905e24a6d476c4a951ba320a30fc 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 198 26.792 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CFE88_RS02870 5d51905e24a6d476c4a951ba320a30fc 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 189 2.6E-58 T 29-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CFE88_RS02870 5d51905e24a6d476c4a951ba320a30fc 203 SUPERFAMILY SSF52540 1 193 6.31E-37 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 Pfam PF02388 FemAB family 6 398 5.3E-78 T 29-03-2018 IPR003447 FemABX peptidyl transferase GO:0016755|GO:0044038 CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 Gene3D G3DSA:3.40.630.30 158 376 1.3E-31 T 29-03-2018 CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 Gene3D G3DSA:3.40.630.30 1 157 8.7E-40 T 29-03-2018 CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 SUPERFAMILY SSF55729 156 235 4.82E-28 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 SUPERFAMILY SSF55729 297 395 4.82E-28 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS00560 b2398e26326f56d734d078afbf40d222 416 SUPERFAMILY SSF55729 1 153 2.47E-36 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 Gene3D G3DSA:3.40.50.1820 20 293 6.1E-26 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 SUPERFAMILY SSF53474 30 291 7.44E-29 T 29-03-2018 IPR029058 Alpha/Beta hydrolase fold CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 Pfam PF12146 Serine aminopeptidase, S33 33 265 5.0E-12 T 29-03-2018 IPR022742 Serine aminopeptidase, S33 CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 1.2E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.2E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS11825 b4b7e6fe9f8ed3a72f5a8bb818fd9482 293 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 1.2E-5 T 29-03-2018 IPR000073 Alpha/beta hydrolase fold-1 CFE88_RS04430 69195617e0e0aa5043a45b69c8e9fa17 840 Gene3D G3DSA:3.40.630.30 630 813 1.3E-11 T 29-03-2018 CFE88_RS04430 69195617e0e0aa5043a45b69c8e9fa17 840 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 529 820 5.0E-79 T 29-03-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal CFE88_RS04430 69195617e0e0aa5043a45b69c8e9fa17 840 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 17 289 8.2E-15 T 29-03-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CFE88_RS04430 69195617e0e0aa5043a45b69c8e9fa17 840 SUPERFAMILY SSF55729 639 823 4.24E-10 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS08360 5fa8f6f846a956934a890c3a15d43d56 473 Gene3D G3DSA:1.20.1250.20 243 444 3.2E-24 T 29-03-2018 CFE88_RS08360 5fa8f6f846a956934a890c3a15d43d56 473 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 29-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CFE88_RS08360 5fa8f6f846a956934a890c3a15d43d56 473 SUPERFAMILY SSF103473 16 438 1.02E-71 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS08360 5fa8f6f846a956934a890c3a15d43d56 473 Pfam PF07690 Major Facilitator Superfamily 26 389 4.5E-32 T 29-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CFE88_RS08360 5fa8f6f846a956934a890c3a15d43d56 473 Gene3D G3DSA:1.20.1250.20 16 232 7.3E-26 T 29-03-2018 CFE88_RS04685 e77a218c119e20f13b5f227898dec13f 151 Pfam PF10097 Predicted membrane protein (DUF2335) 48 87 6.8E-11 T 29-03-2018 IPR019284 Xylella phage Xfas53, Orf42 CFE88_RS00465 3c7d0fd6b39bd37c915afc5ec924fa84 182 PIRSF PIRSF016661 1 179 5.8E-34 T 29-03-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CFE88_RS00465 3c7d0fd6b39bd37c915afc5ec924fa84 182 Pfam PF02632 BioY family 29 171 7.2E-30 T 29-03-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 CFE88_RS00185 89dd53ca286066a8d2e5a9dd6f48a443 336 SUPERFAMILY SSF74650 5 333 6.28E-73 T 29-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 CFE88_RS00185 89dd53ca286066a8d2e5a9dd6f48a443 336 Gene3D G3DSA:2.70.98.10 2 333 5.0E-59 T 29-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CFE88_RS00185 89dd53ca286066a8d2e5a9dd6f48a443 336 Pfam PF01263 Aldose 1-epimerase 13 331 3.3E-49 T 29-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CFE88_RS04725 96608292312909235f23fdf9570ef718 471 Pfam PF06605 Prophage endopeptidase tail 27 316 7.8E-20 T 29-03-2018 IPR010572 Prophage tail endopeptidase CFE88_RS05835 5462661cb4eee15472db8bfa0a76ae28 273 Gene3D G3DSA:1.10.3720.10 4 259 9.5E-33 T 29-03-2018 CFE88_RS05835 5462661cb4eee15472db8bfa0a76ae28 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 264 2.5E-16 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS05835 5462661cb4eee15472db8bfa0a76ae28 273 SUPERFAMILY SSF161098 11 249 2.88E-40 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS06895 4cb9e7c8ee18b486b949ae641ed30d30 129 PIRSF PIRSF012565 1 129 6.3E-51 T 29-03-2018 IPR009370 Protein of unknown function DUF1027 CFE88_RS06895 4cb9e7c8ee18b486b949ae641ed30d30 129 Pfam PF06265 Protein of unknown function (DUF1027) 4 87 5.5E-36 T 29-03-2018 IPR009370 Protein of unknown function DUF1027 CFE88_RS11270 b933acb44e46969a950050b745972cf2 540 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 51 501 3.4E-141 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS11270 b933acb44e46969a950050b745972cf2 540 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 29-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 CFE88_RS11270 b933acb44e46969a950050b745972cf2 540 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 12 504 8.1E-151 T 29-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 CFE88_RS06480 cf9558015440d2c8d584e868c787d6d1 222 Pfam PF16882 Domain of unknown function (DUF5079) 13 203 3.4E-10 T 29-03-2018 IPR031690 Protein of unknown function DUF5079 CFE88_RS09120 a44e73222d9f3dbfb005d1c72650139c 122 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 4 113 1.1E-36 T 29-03-2018 IPR018745 Domain of unknown function DUF2294 CFE88_RS08085 e359549fbdafaf247d3f4b77d10502b5 114 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 108 6.6E-29 T 29-03-2018 CFE88_RS11735 00adf1688ff2d09310cd1ff39972a2be 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 29-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 CFE88_RS11735 00adf1688ff2d09310cd1ff39972a2be 479 Pfam PF00171 Aldehyde dehydrogenase family 17 472 1.0E-157 T 29-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11735 00adf1688ff2d09310cd1ff39972a2be 479 Gene3D G3DSA:3.40.309.10 267 445 3.1E-65 T 29-03-2018 CFE88_RS11735 00adf1688ff2d09310cd1ff39972a2be 479 Gene3D G3DSA:3.40.605.10 2 266 5.4E-86 T 29-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 CFE88_RS11735 00adf1688ff2d09310cd1ff39972a2be 479 SUPERFAMILY SSF53720 5 478 1.57E-148 T 29-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 CFE88_RS02735 9f699199dcb9db7513079ffec7103e4a 564 Hamap MF_00728 Septation ring formation regulator EzrA [ezrA]. 3 564 20.757 T 29-03-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 CFE88_RS02735 9f699199dcb9db7513079ffec7103e4a 564 Gene3D G3DSA:1.20.1170.10 23 553 5.7E-6 T 29-03-2018 CFE88_RS02735 9f699199dcb9db7513079ffec7103e4a 564 Pfam PF06160 Septation ring formation regulator, EzrA 5 560 7.6E-160 T 29-03-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 CFE88_RS06865 f25d02dc7097ed5be2a47613369e0d4b 48 Pfam PF12459 D-Ala-teichoic acid biosynthesis protein 11 48 1.7E-16 T 29-03-2018 IPR021008 Protein of unknown function DUF3687 CFE88_RS01410 3280a430c00895baadd41b3ba548bdb0 108 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 106 3.9E-32 T 29-03-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 CFE88_RS01410 3280a430c00895baadd41b3ba548bdb0 108 Gene3D G3DSA:3.30.750.24 1 105 5.0E-15 T 29-03-2018 IPR002645 STAS domain CFE88_RS01410 3280a430c00895baadd41b3ba548bdb0 108 Pfam PF01740 STAS domain 5 99 1.3E-12 T 29-03-2018 IPR002645 STAS domain CFE88_RS01410 3280a430c00895baadd41b3ba548bdb0 108 SUPERFAMILY SSF52091 3 103 2.16E-24 T 29-03-2018 IPR002645 STAS domain CFE88_RS01930 74f97c510895b8886c373c233f6cf67e 71 Hamap MF_00829 UPF0435 protein . 1 67 19.255 T 29-03-2018 IPR009507 Protein of unknown function UPF0435 CFE88_RS01930 74f97c510895b8886c373c233f6cf67e 71 Pfam PF06569 Protein of unknown function (DUF1128) 6 67 1.6E-27 T 29-03-2018 IPR009507 Protein of unknown function UPF0435 CFE88_RS02890 7039282fed9fa118526250de18bacd6e 456 Pfam PF07261 Replication initiation and membrane attachment 318 381 1.1E-7 T 29-03-2018 IPR006343 DnaD domain CFE88_RS02890 7039282fed9fa118526250de18bacd6e 456 Gene3D G3DSA:1.10.10.630 307 380 8.5E-9 T 29-03-2018 IPR034829 DnaD-like domain CFE88_RS12430 55b16e0234aa6ea86c68eaf34ffa77bf 277 SUPERFAMILY SSF56747 30 174 1.23E-7 T 29-03-2018 CFE88_RS12430 55b16e0234aa6ea86c68eaf34ffa77bf 277 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 43 166 3.2E-8 T 29-03-2018 IPR015330 DNA primase/polymerase, bifunctional, N-terminal CFE88_RS06455 0832385a057409f34a5a59753ec6ab5f 208 SUPERFAMILY SSF103473 64 176 8.63E-5 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS06455 0832385a057409f34a5a59753ec6ab5f 208 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 1 202 2.5E-49 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06455 0832385a057409f34a5a59753ec6ab5f 208 Pfam PF04276 Protein of unknown function (DUF443) 4 194 3.7E-25 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS05840 f650fc6fd11846d6f6b0ba371716db7a 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 257 4.9E-7 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS05840 f650fc6fd11846d6f6b0ba371716db7a 267 Gene3D G3DSA:1.10.3720.10 5 260 2.6E-33 T 29-03-2018 CFE88_RS05840 f650fc6fd11846d6f6b0ba371716db7a 267 SUPERFAMILY SSF161098 2 257 8.76E-44 T 29-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 CFE88_RS05485 c1070199466176c4a116e3df77aa23f1 218 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 34 1.0E-6 T 29-03-2018 IPR019933 DivIVA domain CFE88_RS05485 c1070199466176c4a116e3df77aa23f1 218 Pfam PF05103 DivIVA protein 4 133 2.5E-33 T 29-03-2018 IPR007793 DivIVA family CFE88_RS06450 4fef9acd5462b4451c23ec46802f6692 99 Pfam PF13780 Domain of unknown function (DUF4176) 4 75 6.1E-24 T 29-03-2018 IPR025233 Protein of unknown function DUF4176 CFE88_RS00580 47093b880fb35aac00abbc8c116d2ffc 302 Pfam PF03547 Membrane transport protein 1 146 2.3E-10 T 29-03-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 CFE88_RS12690 66aa2160740bc3b9a3c9e79eed013220 127 Pfam PF05713 Bacterial mobilisation protein (MobC) 80 122 5.1E-7 T 29-03-2018 IPR008687 Bacterial mobilisation CFE88_RS12690 66aa2160740bc3b9a3c9e79eed013220 127 Gene3D G3DSA:1.20.5.780 24 114 5.2E-4 T 29-03-2018 CFE88_RS04615 81de022499a4cb4882e3e68c66c1c16b 62 Gene3D G3DSA:1.10.3470.10 6 62 5.6E-5 T 29-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like CFE88_RS09555 cc30bf25ddf87206526dec70556f6d75 244 Pfam PF11368 Protein of unknown function (DUF3169) 3 233 4.6E-45 T 29-03-2018 IPR021509 Protein of unknown function DUF3169 CFE88_RS06400 641142dfc4f92f46ceac664a8f336c1c 152 SUPERFAMILY SSF160704 20 151 2.35E-35 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS06400 641142dfc4f92f46ceac664a8f336c1c 152 PIRSF PIRSF006187 1 152 2.0E-32 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS06400 641142dfc4f92f46ceac664a8f336c1c 152 Gene3D G3DSA:3.30.1830.10 24 150 7.7E-30 T 29-03-2018 CFE88_RS06400 641142dfc4f92f46ceac664a8f336c1c 152 Pfam PF06998 Protein of unknown function (DUF1307) 24 148 2.7E-28 T 29-03-2018 IPR009736 Protein of unknown function DUF1307 CFE88_RS12220 9f11fee184b99bc0e712efdd5f148b98 171 Gene3D G3DSA:1.10.3480.10 12 166 7.3E-16 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone CFE88_RS12220 9f11fee184b99bc0e712efdd5f148b98 171 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 26 153 9.0E-18 T 29-03-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 CFE88_RS12220 9f11fee184b99bc0e712efdd5f148b98 171 SUPERFAMILY SSF89155 23 158 1.7E-18 T 29-03-2018 IPR020945 DMSO/Nitrate reductase chaperone CFE88_RS07965 5d12d9fd99534e01c03c14fe4056995d 168 SUPERFAMILY SSF55729 4 167 6.08E-30 T 29-03-2018 IPR016181 Acyl-CoA N-acyltransferase CFE88_RS07965 5d12d9fd99534e01c03c14fe4056995d 168 Pfam PF13420 Acetyltransferase (GNAT) domain 5 161 5.4E-17 T 29-03-2018 CFE88_RS07965 5d12d9fd99534e01c03c14fe4056995d 168 Gene3D G3DSA:3.40.630.30 3 168 2.1E-29 T 29-03-2018 CFE88_RS09660 c8f7b5d15bc4d3e2fb7db189c379d6e1 119 Pfam PF11345 Protein of unknown function (DUF3147) 9 118 2.3E-45 T 29-03-2018 IPR021493 Protein of unknown function DUF3147 CFE88_RS01875 81831f61990f849b254d57b9d6f1967e 241 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 6 196 2.3E-44 T 29-03-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CFE88_RS01875 81831f61990f849b254d57b9d6f1967e 241 Gene3D G3DSA:3.40.50.880 12 173 8.2E-16 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS01875 81831f61990f849b254d57b9d6f1967e 241 SUPERFAMILY SSF52317 16 189 4.3E-21 T 29-03-2018 IPR029062 Class I glutamine amidotransferase-like CFE88_RS09400 e4c8d487def9029824428017fb999197 84 Pfam PF04226 Transglycosylase associated protein 34 78 1.1E-12 T 29-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 CFE88_RS09900 1c7fc50305fecbaad58d45ab6ce8bb69 144 Gene3D G3DSA:3.10.450.130 34 131 2.9E-23 T 29-03-2018 CFE88_RS09900 1c7fc50305fecbaad58d45ab6ce8bb69 144 Pfam PF07252 Protein of unknown function (DUF1433) 35 123 1.2E-22 T 29-03-2018 IPR009881 Protein of unknown function DUF1433 CFE88_RS09040 f787c96012a92866a2d07c88866fd2b2 261 Pfam PF07907 YibE/F-like protein 4 244 1.3E-68 T 29-03-2018 IPR012507 YibE/F-like CFE88_RS09040 f787c96012a92866a2d07c88866fd2b2 261 PIRSF PIRSF031503 1 260 2.8E-120 T 29-03-2018 IPR014564 Uncharacterised conserved protein UCP031503, transmembrane CFE88_RS03195 d041f9e35edef271a7b3022f8b07672d 102 Pfam PF06949 Protein of unknown function (DUF1292) 24 98 6.2E-12 T 29-03-2018 IPR009711 Uncharacterised protein family UPF0473 CFE88_RS03195 d041f9e35edef271a7b3022f8b07672d 102 Hamap MF_01448 UPF0473 protein . 15 102 18.843 T 29-03-2018 IPR009711 Uncharacterised protein family UPF0473 CFE88_RS03525 3b8f88fbb8575b238914838173fb8de2 108 SUPERFAMILY SSF89957 1 103 7.72E-31 T 29-03-2018 IPR029756 MTH1187/YkoF-like CFE88_RS03525 3b8f88fbb8575b238914838173fb8de2 108 Gene3D G3DSA:3.30.70.930 1 107 1.9E-33 T 29-03-2018 IPR029756 MTH1187/YkoF-like CFE88_RS03525 3b8f88fbb8575b238914838173fb8de2 108 Pfam PF01910 Thiamine-binding protein 4 99 5.9E-33 T 29-03-2018 IPR002767 Thiamine-binding protein CFE88_RS03525 3b8f88fbb8575b238914838173fb8de2 108 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 2 101 2.3E-35 T 29-03-2018 IPR002767 Thiamine-binding protein CFE88_RS11875 f05b84a3ec57b5c4b13273c794b198ff 248 Gene3D G3DSA:3.40.50.2000 2 238 4.6E-31 T 29-03-2018 CFE88_RS11875 f05b84a3ec57b5c4b13273c794b198ff 248 Pfam PF00534 Glycosyl transferases group 1 73 231 1.0E-35 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS11875 f05b84a3ec57b5c4b13273c794b198ff 248 SUPERFAMILY SSF53756 2 222 2.96E-43 T 29-03-2018 CFE88_RS09600 91516fcd9ad479c801493925468a9f34 133 Gene3D G3DSA:3.40.190.10 2 126 2.2E-6 T 29-03-2018 CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 150 2.4E-42 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 SUPERFAMILY SSF55486 2 154 8.97E-45 T 29-03-2018 CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 120 130 - T 29-03-2018 IPR020549 Endoribonuclease YbeY, conserved site CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 Gene3D G3DSA:3.40.390.30 2 155 2.2E-49 T 29-03-2018 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 Pfam PF02130 Uncharacterized protein family UPF0054 20 150 5.1E-47 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CFE88_RS03400 25dd49a898865cdbefebcecbf3100ee1 155 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 154 24.176 T 29-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CFE88_RS06465 cf8a44386ccbe527bbe5629e5322eede 220 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 15 213 9.5E-55 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06465 cf8a44386ccbe527bbe5629e5322eede 220 Pfam PF04276 Protein of unknown function (DUF443) 20 213 1.7E-39 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS07675 e2c1220ba4b7ef88e3ea487343d23008 157 Pfam PF07681 DoxX 9 103 1.5E-8 T 29-03-2018 IPR032808 DoxX family CFE88_RS01850 8ac878c7d7075839ded8b43e5e91d4ed 182 Pfam PF11667 Putative zincin peptidase 60 158 1.6E-18 T 29-03-2018 IPR021683 Putative zincin peptidase CFE88_RS08930 79239d465c5ed14570a8363037891ae8 241 Pfam PF05175 Methyltransferase small domain 30 171 2.6E-15 T 29-03-2018 IPR007848 Methyltransferase small domain GO:0008168 CFE88_RS08930 79239d465c5ed14570a8363037891ae8 241 Gene3D G3DSA:3.40.50.150 6 240 1.2E-35 T 29-03-2018 CFE88_RS08930 79239d465c5ed14570a8363037891ae8 241 SUPERFAMILY SSF53335 17 174 1.18E-27 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS06880 fe13abe8904823330c63015fcc80e574 144 Gene3D G3DSA:1.20.120.580 1 139 3.3E-28 T 29-03-2018 IPR008201 Protein of unknown function DUF86 CFE88_RS06880 fe13abe8904823330c63015fcc80e574 144 Pfam PF01934 Protein of unknown function DUF86 20 123 8.7E-16 T 29-03-2018 IPR008201 Protein of unknown function DUF86 CFE88_RS08315 30fa84f8d2da70a0f2587f82005b54f5 254 Pfam PF06738 Putative threonine/serine exporter 16 253 4.0E-60 T 29-03-2018 IPR010619 Putative threonine/serine exporter CFE88_RS03030 928ec783446f68ea6c405ca0d99f3654 173 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 157 5.8E-25 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CFE88_RS03030 928ec783446f68ea6c405ca0d99f3654 173 Pfam PF04093 rod shape-determining protein MreD 1 164 8.7E-34 T 29-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CFE88_RS02605 7766de96e6851350b5d5611913bb19fc 215 Pfam PF02390 Putative methyltransferase 38 206 5.5E-48 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CFE88_RS02605 7766de96e6851350b5d5611913bb19fc 215 SUPERFAMILY SSF53335 30 207 8.63E-28 T 29-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CFE88_RS02605 7766de96e6851350b5d5611913bb19fc 215 Gene3D G3DSA:3.40.50.150 1 210 7.8E-25 T 29-03-2018 CFE88_RS02605 7766de96e6851350b5d5611913bb19fc 215 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 211 29.0 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CFE88_RS02605 7766de96e6851350b5d5611913bb19fc 215 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 29 208 2.1E-54 T 29-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CFE88_RS10615 b616a3ef834091b5d9c3dfe34d37be86 135 Pfam PF11208 Protein of unknown function (DUF2992) 3 135 5.7E-34 T 29-03-2018 IPR016787 Uncharacterised conserved protein UCP021328 CFE88_RS10615 b616a3ef834091b5d9c3dfe34d37be86 135 PIRSF PIRSF021328 1 135 1.5E-47 T 29-03-2018 IPR016787 Uncharacterised conserved protein UCP021328 CFE88_RS07600 f7892184c657286aedbd92a33464b108 271 Pfam PF02535 ZIP Zinc transporter 15 113 1.8E-9 T 29-03-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CFE88_RS07600 f7892184c657286aedbd92a33464b108 271 Pfam PF02535 ZIP Zinc transporter 124 266 2.4E-13 T 29-03-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CFE88_RS07465 cd11b26d565f43b99c3a9bdd3a9eed88 164 Pfam PF12821 Threonine/Serine exporter, ThrE 8 134 1.8E-38 T 29-03-2018 IPR024528 Threonine/Serine exporter, ThrE CFE88_RS06560 312704776868b2b6b290cfb478d8b2e0 265 Pfam PF13743 Thioredoxin 27 189 2.4E-42 T 29-03-2018 CFE88_RS06560 312704776868b2b6b290cfb478d8b2e0 265 Gene3D G3DSA:3.40.30.10 10 204 4.9E-14 T 29-03-2018 CFE88_RS06560 312704776868b2b6b290cfb478d8b2e0 265 SUPERFAMILY SSF52833 24 199 1.72E-13 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS01660 ec2524804c11abb1f7466410401fd337 428 Pfam PF00155 Aminotransferase class I and II 79 420 1.0E-33 T 29-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CFE88_RS01660 ec2524804c11abb1f7466410401fd337 428 Gene3D G3DSA:3.90.1150.10 246 428 1.2E-24 T 29-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 CFE88_RS01660 ec2524804c11abb1f7466410401fd337 428 SUPERFAMILY SSF53383 29 419 2.78E-58 T 29-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase CFE88_RS01660 ec2524804c11abb1f7466410401fd337 428 Gene3D G3DSA:3.40.640.10 5 245 1.4E-15 T 29-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 CFE88_RS08950 6cc2e7d4c3b2037ddc299f8b19590c88 109 Gene3D G3DSA:3.30.70.120 1 109 5.1E-15 T 29-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CFE88_RS08950 6cc2e7d4c3b2037ddc299f8b19590c88 109 SUPERFAMILY SSF54913 1 107 3.21E-13 T 29-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CFE88_RS08950 6cc2e7d4c3b2037ddc299f8b19590c88 109 Pfam PF06153 Cyclic-di-AMP receptor 1 109 4.3E-55 T 29-03-2018 IPR010375 Cyclic-di-AMP receptor CFE88_RS04985 6f3f927a55809a9b544f43b815a875e5 96 SUPERFAMILY SSF89957 4 86 9.55E-20 T 29-03-2018 IPR029756 MTH1187/YkoF-like CFE88_RS04985 6f3f927a55809a9b544f43b815a875e5 96 Pfam PF01910 Thiamine-binding protein 6 84 1.1E-15 T 29-03-2018 IPR002767 Thiamine-binding protein CFE88_RS04985 6f3f927a55809a9b544f43b815a875e5 96 Gene3D G3DSA:3.30.70.930 1 96 1.9E-18 T 29-03-2018 IPR029756 MTH1187/YkoF-like CFE88_RS07560 8b575001be8f6785bbf6eb2d824e75cc 307 SMART SM00046 7 139 0.0014 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CFE88_RS07560 8b575001be8f6785bbf6eb2d824e75cc 307 SUPERFAMILY SSF111331 5 301 1.26E-57 T 29-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain CFE88_RS07560 8b575001be8f6785bbf6eb2d824e75cc 307 Gene3D G3DSA:3.40.50.10330 1 139 1.0E-20 T 29-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 CFE88_RS07560 8b575001be8f6785bbf6eb2d824e75cc 307 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 9 301 8.1E-48 T 29-03-2018 IPR005218 Diacylglycerol/lipid kinase CFE88_RS07560 8b575001be8f6785bbf6eb2d824e75cc 307 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 135 1.8E-25 T 29-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 SUPERFAMILY SSF52540 242 460 7.57E-41 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 29-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 Pfam PF00005 ABC transporter 272 408 6.7E-21 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 Pfam PF00005 ABC transporter 20 158 7.0E-25 T 29-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 SUPERFAMILY SSF52540 2 220 2.01E-49 T 29-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 Gene3D G3DSA:3.40.50.300 244 465 5.2E-41 T 29-03-2018 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 Gene3D G3DSA:3.40.50.300 1 231 1.5E-52 T 29-03-2018 CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 SMART SM00382 28 214 1.9E-8 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS05970 b7f3d57b079aaa9237834aeaaaec191a 467 SMART SM00382 277 457 1.2E-9 T 29-03-2018 IPR003593 AAA+ ATPase domain CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 Pfam PF00255 Glutathione peroxidase 3 110 2.0E-32 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 PRINTS PR01011 Glutathione peroxidase family signature 56 72 9.0E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 PRINTS PR01011 Glutathione peroxidase family signature 121 130 9.0E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 PRINTS PR01011 Glutathione peroxidase family signature 21 38 9.0E-17 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 PIRSF PIRSF000303 1 158 1.1E-61 T 29-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 Gene3D G3DSA:3.40.30.10 1 158 2.3E-37 T 29-03-2018 CFE88_RS11200 f0d756e777d20dd1c71af6d413c86d1e 158 SUPERFAMILY SSF52833 1 158 3.18E-50 T 29-03-2018 IPR012336 Thioredoxin-like fold CFE88_RS11760 26373982725f11bb4ff6c87d38eae3e6 204 Pfam PF09335 SNARE associated Golgi protein 30 160 2.0E-22 T 29-03-2018 IPR032816 SNARE associated Golgi protein CFE88_RS01950 6d796162ea9f1004df9d5e10136e84e5 53 Gene3D G3DSA:1.10.150.130 2 53 2.2E-4 T 29-03-2018 IPR023109 Integrase/recombinase, N-terminal CFE88_RS06200 c28986b37a70bca7e7202f09e891a5ce 78 Pfam PF01076 Plasmid recombination enzyme 2 65 1.2E-16 T 29-03-2018 IPR001668 Plasmid recombination enzyme GO:0003677|GO:0005727|GO:0006310 CFE88_RS11640 d7b9658b5d6c742e8e6af1ff6cca612d 293 Pfam PF06800 Sugar transport protein 7 292 2.1E-109 T 29-03-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 CFE88_RS06270 423e9bdb8f28d9dcdec90d18878b061e 81 Pfam PF14166 YueH-like protein 4 76 1.3E-24 T 29-03-2018 IPR020260 Uncharacterised protein family YueH CFE88_RS02185 3c90f5a819aceb1b476a671d23921ee4 352 Pfam PF13303 Phosphotransferase system, EIIC 14 346 8.0E-83 T 29-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CFE88_RS02625 5931129b2b50338bddaae3e4087de8fd 284 Pfam PF07285 Protein of unknown function (DUF1444) 1 263 5.5E-126 T 29-03-2018 IPR010838 Protein of unknown unction DUF1444 CFE88_RS02625 5931129b2b50338bddaae3e4087de8fd 284 PIRSF PIRSF012562 1 265 2.0E-138 T 29-03-2018 IPR010838 Protein of unknown unction DUF1444 CFE88_RS00860 f4aad0cfe93dfa428c5316ea1d6f3e0f 166 Pfam PF03780 Asp23 family, cell envelope-related function 38 143 4.6E-34 T 29-03-2018 IPR005531 Alkaline shock protein Asp23 CFE88_RS10215 8a7fb2fa670b12d539f5f77211548fc5 107 Gene3D G3DSA:2.40.310.10 3 105 1.1E-41 T 29-03-2018 IPR014728 Staphostatin A/B GO:0004869|GO:0005737 CFE88_RS10215 8a7fb2fa670b12d539f5f77211548fc5 107 SUPERFAMILY SSF50882 2 107 5.75E-56 T 29-03-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 CFE88_RS10215 8a7fb2fa670b12d539f5f77211548fc5 107 Pfam PF09022 Staphostatin A 3 107 2.3E-57 T 29-03-2018 IPR015112 Staphostatin A CFE88_RS09290 d84feaa43142e44b9b83bf7d862df822 362 Pfam PF07751 Abi-like protein 35 261 6.5E-31 T 29-03-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like CFE88_RS11160 85a97804e11b6a9d2043e7a2c16385dd 257 Pfam PF00474 Sodium:solute symporter family 2 256 1.9E-22 T 29-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 CFE88_RS04045 2c6d75d1d71ce6f66e410ba490accda4 86 SMART SM00932 4 86 1.1E-18 T 29-03-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS04045 2c6d75d1d71ce6f66e410ba490accda4 86 Gene3D G3DSA:3.30.1370.70 2 85 4.6E-20 T 29-03-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS04045 2c6d75d1d71ce6f66e410ba490accda4 86 SUPERFAMILY SSF110836 1 83 4.05E-27 T 29-03-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS04045 2c6d75d1d71ce6f66e410ba490accda4 86 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 4 83 2.4E-21 T 29-03-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal CFE88_RS11080 3156b8b900212f3edfe9c4416cdb6a30 94 Pfam PF02796 Helix-turn-helix domain of resolvase 29 77 4.1E-13 T 29-03-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CFE88_RS11080 3156b8b900212f3edfe9c4416cdb6a30 94 Gene3D G3DSA:1.10.10.60 28 78 3.6E-10 T 29-03-2018 CFE88_RS06180 5895ffdf7311689ddef8fb4df3a07db3 205 Pfam PF01810 LysE type translocator 15 196 3.2E-27 T 29-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CFE88_RS02750 f848ab6ab746c89575acf0d26e39373a 254 Pfam PF01925 Sulfite exporter TauE/SafE 12 246 8.5E-41 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CFE88_RS07855 9d5a152588a2e5b52de3e8f937cea879 139 Gene3D G3DSA:1.20.5.400 18 120 8.2E-6 T 29-03-2018 CFE88_RS01115 d4e11d36fb3830e1af18422af6d9a270 396 Gene3D G3DSA:3.30.470.20 123 330 5.3E-17 T 29-03-2018 CFE88_RS01115 d4e11d36fb3830e1af18422af6d9a270 396 SUPERFAMILY SSF56059 126 317 2.16E-21 T 29-03-2018 CFE88_RS03925 11d4fc59f92ac6c6823bcc827dc00a4f 231 Pfam PF04298 Putative neutral zinc metallopeptidase 6 227 1.8E-90 T 29-03-2018 IPR007395 Putative neutral zinc metallopeptidase CFE88_RS06365 902108e28677f71a77fc929d501d1ddb 208 TIGRFAM TIGR01218 Gpos_tandem_5TM: tandem five-TM protein 4 205 8.0E-47 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS06365 902108e28677f71a77fc929d501d1ddb 208 Pfam PF04276 Protein of unknown function (DUF443) 10 204 2.9E-52 T 29-03-2018 IPR005915 Tandem five-TM protein CFE88_RS10415 eeef9983145124171b2587f856653851 521 Pfam PF03606 C4-dicarboxylate anaerobic carrier 21 517 6.4E-172 T 29-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 CFE88_RS12260 b5d275f4f09371bd411d2057607de935 121 Pfam PF11337 Protein of unknown function (DUF3139) 9 83 1.6E-19 T 29-03-2018 IPR021486 Protein of unknown function DUF3139 CFE88_RS03135 9106d2bf8e296ec3bcfe3b53afb2880f 258 SUPERFAMILY SSF69572 4 246 1.57E-57 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS03135 9106d2bf8e296ec3bcfe3b53afb2880f 258 Gene3D G3DSA:3.40.50.720 1 251 4.6E-41 T 29-03-2018 CFE88_RS03135 9106d2bf8e296ec3bcfe3b53afb2880f 258 Pfam PF00899 ThiF family 6 159 2.6E-34 T 29-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CFE88_RS03695 06c33f3a6ff879928b672f34d11e06bf 332 Gene3D G3DSA:3.40.50.970 1 332 8.2E-80 T 29-03-2018 CFE88_RS03695 06c33f3a6ff879928b672f34d11e06bf 332 SUPERFAMILY SSF52518 3 326 5.18E-96 T 29-03-2018 IPR029061 Thiamin diphosphate-binding fold CFE88_RS03695 06c33f3a6ff879928b672f34d11e06bf 332 Pfam PF00676 Dehydrogenase E1 component 19 316 5.7E-87 T 29-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 CFE88_RS09055 f503b435085195de308e24fe5bfb0623 501 Gene3D G3DSA:3.40.50.2000 288 487 2.7E-29 T 29-03-2018 CFE88_RS09055 f503b435085195de308e24fe5bfb0623 501 SUPERFAMILY SSF53756 186 471 2.67E-42 T 29-03-2018 CFE88_RS09055 f503b435085195de308e24fe5bfb0623 501 Pfam PF09318 Glycosyl transferase 1 domain A 3 203 4.2E-27 T 29-03-2018 IPR015397 Glycosyl transferase 1, domain A CFE88_RS09055 f503b435085195de308e24fe5bfb0623 501 Pfam PF00534 Glycosyl transferases group 1 323 478 8.3E-31 T 29-03-2018 IPR001296 Glycosyl transferase, family 1 CFE88_RS06910 7d2e9172c4768cc1aa7acc229c3f8bb6 275 Pfam PF01925 Sulfite exporter TauE/SafE 8 269 1.6E-51 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CFE88_RS10955 d5e2e0f52e52f17e004c8042a63534ee 104 Gene3D G3DSA:1.10.287.1060 4 100 4.4E-6 T 29-03-2018 CFE88_RS10955 d5e2e0f52e52f17e004c8042a63534ee 104 SUPERFAMILY SSF140453 7 92 1.96E-6 T 29-03-2018 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS10955 d5e2e0f52e52f17e004c8042a63534ee 104 Pfam PF06013 Proteins of 100 residues with WXG 7 91 8.6E-12 T 29-03-2018 IPR010310 Type VII secretion system ESAT-6-like CFE88_RS07485 afc053a4eeac8546933e129eb93aca09 296 Gene3D G3DSA:1.20.58.60 85 296 0.0023 T 29-03-2018 CFE88_RS11520 380999e52c0554068eaae7da3213e1f7 60 Pfam PF12669 Virus attachment protein p12 family 6 42 8.6E-9 T 29-03-2018 CFE88_RS05580 b70070e88996063ef2db5c1dae9502c8 44 Pfam PF05480 Staphylococcus haemolytic protein 1 43 2.8E-25 T 29-03-2018 IPR008846 Staphylococcal hemolytic protein family GO:0009405 CFE88_RS10295 6f64bfc6196e9d8bf5118bc2a2e51fd9 190 Gene3D G3DSA:3.40.190.10 1 162 5.3E-6 T 29-03-2018 CFE88_RS10295 6f64bfc6196e9d8bf5118bc2a2e51fd9 190 Pfam PF16729 Domain of unknown function (DUF5067) 39 171 1.2E-17 T 29-03-2018 IPR031989 Domain of unknown function DUF5067 CFE88_RS04800 8b3727fe8362b59e59231c947d51de0f 447 TIGRFAM TIGR01538 portal_SPP1: phage portal protein, SPP1 family 3 419 5.6E-117 T 29-03-2018 IPR006428 Portal protein, SPP1-type CFE88_RS04800 8b3727fe8362b59e59231c947d51de0f 447 Pfam PF05133 Phage portal protein, SPP1 Gp6-like 3 423 3.4E-121 T 29-03-2018 IPR021145 Portal protein CFE88_RS06790 7d9b5bcefa2e85053d88de06c1615704 118 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 107 3.2E-24 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CFE88_RS06790 7d9b5bcefa2e85053d88de06c1615704 118 Pfam PF03334 Na+/H+ antiporter subunit 13 94 7.5E-23 T 29-03-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 CFE88_RS00035 da1d349bd4c2fc0625656f34c26a8a9c 215 Gene3D G3DSA:3.40.190.10 1 206 8.6E-4 T 29-03-2018 CFE88_RS07395 9521460bf74a54b065ad4ae23ae24660 77 Pfam PF09964 Uncharacterized protein conserved in bacteria (DUF2198) 3 74 7.2E-33 T 29-03-2018 IPR019242 Protein of unknown function DUF2198 CFE88_RS09635 4a7f14d539acca4a8c6a036360edd9d3 372 Gene3D G3DSA:2.40.50.100 37 185 1.3E-5 T 29-03-2018 CFE88_RS11705 c6ad234eeab19da84966d43b6211fd57 220 Pfam PF00881 Nitroreductase family 14 198 7.3E-30 T 29-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CFE88_RS11705 c6ad234eeab19da84966d43b6211fd57 220 SUPERFAMILY SSF55469 8 219 1.96E-58 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS11705 c6ad234eeab19da84966d43b6211fd57 220 Gene3D G3DSA:3.40.109.10 5 220 1.4E-41 T 29-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CFE88_RS01900 cae29ae18ef4e09b11808ea639fca040 233 PIRSF PIRSF031509 5 233 3.1E-52 T 29-03-2018 IPR016975 Cell wall-active antibiotic response protein GO:0016021 CFE88_RS01900 cae29ae18ef4e09b11808ea639fca040 233 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 119 230 2.5E-30 T 29-03-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF CFE88_RS09960 f9f2c051b08abe3fad7dbfcfce40bdb2 174 Pfam PF07563 Protein of unknown function (DUF1541) 54 103 3.9E-26 T 29-03-2018 IPR011438 Domain of unknown function DUF1541 CFE88_RS09960 f9f2c051b08abe3fad7dbfcfce40bdb2 174 Pfam PF07563 Protein of unknown function (DUF1541) 119 167 1.6E-21 T 29-03-2018 IPR011438 Domain of unknown function DUF1541 CFE88_RS09960 f9f2c051b08abe3fad7dbfcfce40bdb2 174 Gene3D G3DSA:2.40.30.20 97 164 0.21 T 29-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CFE88_RS10760 949125e70fa2975ca16974e1dc2210c0 119 ProDom PD070949 MEMBRANE PROTEIN YVLA SPANNING SIMILAR SE2241 LMO0604 LMO2177 LIN2280 INTEGRAL 15 117 3.0E-36 T 29-03-2018 CFE88_RS05590 13d3f0b14d7c4588ef0009befdb9f0e8 46 Pfam PF05480 Staphylococcus haemolytic protein 3 45 1.8E-20 T 29-03-2018 IPR008846 Staphylococcal hemolytic protein family GO:0009405 CFE88_RS12270 8a3157900b95223fe98a548bed04302f 116 Pfam PF16230 Domain of unknown function (DUF4889) 39 109 3.7E-34 T 29-03-2018 IPR032613 Protein of unknown function DUF4889 CFE88_RS01335 302f9a296c5eda66b08d4b79ff6a6045 97 Pfam PF02583 Metal-sensitive transcriptional repressor 14 92 1.6E-27 T 29-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CFE88_RS01785 96b39fa586e8326a5da60894895daed6 63 Pfam PF14044 NETI protein 8 59 2.6E-26 T 29-03-2018 IPR025930 NETI protein CFE88_RS07175 566794639d5a89e412c6e3ff97ccaeb0 161 Pfam PF03592 Terminase small subunit 4 145 4.1E-33 T 29-03-2018 IPR005335 Terminase small subunit GO:0006323 CFE88_RS06175 c06486016c97a656daa944d7103cd1a6 52 Pfam PF05732 Firmicute plasmid replication protein (RepL) 10 40 2.7E-5 T 29-03-2018 IPR008813 Plasmid replication protein, RepL GO:0006260|GO:0006276 CFE88_RS11750 028e4575b508d286333fa038637862b3 598 Pfam PF00999 Sodium/hydrogen exchanger family 15 397 1.0E-35 T 29-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CFE88_RS05585 df7b3b2863edc682008b080ec02546d2 44 Pfam PF05480 Staphylococcus haemolytic protein 1 43 1.2E-21 T 29-03-2018 IPR008846 Staphylococcal hemolytic protein family GO:0009405 CFE88_RS10120 3359c5e045d3326e840d3c6d2f29d510 254 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 17 190 1.6E-6 T 29-03-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CFE88_RS06470 0e0ee2ee78e5d4ffd7139e3447a4f039 221 Pfam PF16882 Domain of unknown function (DUF5079) 19 205 2.3E-13 T 29-03-2018 IPR031690 Protein of unknown function DUF5079 CFE88_RS10105 b5a2ff959e080f8a62c97c906d7ca46c 80 Pfam PF06970 Replication initiator protein A (RepA) N-terminus 1 53 1.2E-18 T 29-03-2018 IPR010724 Replication initiator A, N-terminal CFE88_RS02955 bc33a590f0397419671273d904a54c61 270 Pfam PF01578 Cytochrome C assembly protein 71 266 1.9E-22 T 29-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CFE88_RS10800 e350945c149b386d39fa5d549303d4dd 676 Gene3D G3DSA:1.20.5.420 50 107 2.4E-4 T 29-03-2018 CFE88_RS10800 e350945c149b386d39fa5d549303d4dd 676 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 639 673 2.1E-4 T 29-03-2018 CFE88_RS05965 8a5b5d09ca545b2af2a437b264f192fc 191 Pfam PF09819 ABC-type cobalt transport system, permease component 9 125 5.0E-31 T 29-03-2018 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted CFE88_RS05965 8a5b5d09ca545b2af2a437b264f192fc 191 PIRSF PIRSF037394 1 191 8.1E-63 T 29-03-2018 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted CFE88_RS09435 2d5b01e494356481280f814020e0efc0 114 Pfam PF14079 Domain of unknown function (DUF4260) 3 113 1.8E-39 T 29-03-2018 IPR025356 Protein of unknown function DUF4260 CFE88_RS09980 16d3103e8ca973c834e221999cfbea48 252 Pfam PF01925 Sulfite exporter TauE/SafE 11 247 5.9E-39 T 29-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CFE88_RS09850 97424c34fc4fa366d411c8388ff360a7 214 SMART SM00901 1 93 1.2E-30 T 29-03-2018 IPR014966 FRG domain CFE88_RS09850 97424c34fc4fa366d411c8388ff360a7 214 Pfam PF08867 FRG domain 4 86 1.1E-17 T 29-03-2018 IPR014966 FRG domain CFE88_RS08035 71e53b333bc998d0e9e235e2dee0ca98 248 Pfam PF13398 Peptidase M50B-like 21 241 1.2E-44 T 29-03-2018 CFE88_RS07765 26981c1ffe6a22ca80ce4fe7fd341612 207 Pfam PF07099 Protein of unknown function (DUF1361) 32 195 4.6E-33 T 29-03-2018 IPR009793 Protein of unknown function DUF1361 CFE88_RS10930 c8f06d07e2c09596f7d09de4b3813dc5 143 Pfam PF10661 WXG100 protein secretion system (Wss), protein EssA 19 118 1.6E-7 T 29-03-2018 IPR034026 ESAT-6 secretion machinery protein EssA CFE88_RS10930 c8f06d07e2c09596f7d09de4b3813dc5 143 TIGRFAM TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA 17 141 9.6E-21 T 29-03-2018 IPR018920 ESAT-6 secretion machinery protein EssA/YueC CFE88_RS06300 c394a57a9d21e6422e73da76b14ad928 361 Pfam PF01594 AI-2E family transporter 16 343 1.4E-66 T 29-03-2018 IPR002549 Transmembrane protein TqsA-like CFE88_RS03550 dab745c6c832fa44b0ce821e2ca1c847 149 PIRSF PIRSF021292 7 149 3.9E-45 T 29-03-2018 IPR016785 ComG operon protein 4 GO:0030420 CFE88_RS10180 a7d5069f20b997aa3d8c969022e183b8 180 Pfam PF13751 Transposase DDE domain 2 128 9.7E-26 T 29-03-2018 IPR025668 Transposase DDE domain CFE88_RS04770 980eb9667b7ee944ecfdf37eff878086 108 Gene3D G3DSA:1.10.3230.10 3 107 2.3E-5 T 29-03-2018 CFE88_RS04770 980eb9667b7ee944ecfdf37eff878086 108 Pfam PF05135 Phage gp6-like head-tail connector protein 4 94 2.1E-15 T 29-03-2018 IPR021146 Phage gp6-like head-tail connector protein CFE88_RS00415 dc377e85503918911ef4786e676ffc8f 278 Hamap MF_01384 Urease accessory protein UreD [ureD]. 6 264 23.309 T 29-03-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 CFE88_RS00415 dc377e85503918911ef4786e676ffc8f 278 Pfam PF01774 UreD urease accessory protein 49 251 2.1E-46 T 29-03-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 CFE88_RS01370 8de5d1ae195d58417efc14d872a22d8d 159 Pfam PF03703 Bacterial PH domain 73 148 6.0E-8 T 29-03-2018 IPR005182 Domain of unknown function DUF304 CFE88_RS01885 20f156f70839b15f8d3234fe39e442d2 328 Pfam PF06081 Aromatic acid exporter family member 1 10 148 1.9E-30 T 29-03-2018 IPR010343 Aromatic acid exporter family member 1 CFE88_RS11100 1e1e3605f62be96f8a140f9e8b004a50 439 Pfam PF05908 Poly-gamma-glutamate hydrolase 236 428 8.6E-65 T 29-03-2018 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS09565 01a77e2a4993b9d3bea3183aa5903b23 212 Pfam PF13346 ABC-2 family transporter protein 7 207 2.1E-26 T 29-03-2018 IPR025699 ABC-2 membrane transporter-like CFE88_RS11055 2e4d6410812049a15217506c26b3983d 99 Pfam PF13930 DNA/RNA non-specific endonuclease 37 92 4.6E-9 T 29-03-2018 CFE88_RS07110 fcd2b7e07b2c0e4796113a446faecd89 167 Pfam PF07274 Protein of unknown function (DUF1440) 21 155 3.6E-57 T 29-03-2018 IPR009898 Protein of unknown function DUF1440 CFE88_RS01545 5bf6e8023deaa8c8af32f814f0ca8842 93 Gene3D G3DSA:2.30.29.30 8 93 2.5E-4 T 29-03-2018 IPR011993 PH domain-like CFE88_RS01270 af11711f51a6d0923a2f523daaf35dc7 77 Pfam PF06612 Protein of unknown function (DUF1146) 17 62 6.7E-19 T 29-03-2018 IPR009526 Protein of unknown function DUF1146 CFE88_RS01270 af11711f51a6d0923a2f523daaf35dc7 77 TIGRFAM TIGR02327 int_mem_ywzB: conserved hypothetical integral membrane protein 9 74 2.7E-15 T 29-03-2018 IPR009526 Protein of unknown function DUF1146 CFE88_RS09815 adbf6fb88f008ff3879e480a4f28af08 263 Pfam PF09648 YycH protein 33 254 7.6E-53 T 29-03-2018 IPR018604 Regulatory protein YycH-like GO:0016021 CFE88_RS12090 8d75230826cd1f6b2e85544fcd525de2 233 Gene3D G3DSA:1.20.58.60 69 227 5.6E-4 T 29-03-2018 CFE88_RS09750 6b6e36ebe244099278b664dbaa06ac88 109 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 106 7.3E-22 T 29-03-2018 IPR008407 Branched-chain amino acid transport, AzlD CFE88_RS05575 2aa4ad9cfb8bed4b9cfc3a70bd2159be 44 Pfam PF05480 Staphylococcus haemolytic protein 1 43 1.1E-24 T 29-03-2018 IPR008846 Staphylococcal hemolytic protein family GO:0009405 CFE88_RS04705 4529db1e008ae7c68a5799f9d80fec94 131 Pfam PF05105 Bacteriophage holin family 15 122 7.3E-29 T 29-03-2018 IPR006480 Bacteriophage holin family CFE88_RS04705 4529db1e008ae7c68a5799f9d80fec94 131 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 14 127 8.5E-27 T 29-03-2018 IPR006480 Bacteriophage holin family CFE88_RS07135 1d138b9ac8ab236867f3cba8b5a93113 435 Pfam PF02386 Cation transport protein 32 413 3.1E-47 T 29-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CFE88_RS10980 c629e0c29c86f6f48897b3443ea2a25e 150 Pfam PF13930 DNA/RNA non-specific endonuclease 9 140 2.7E-35 T 29-03-2018 CFE88_RS01620 1116e5880c5213281fce6775d2931c71 246 Pfam PF02517 CAAX protease self-immunity 127 218 2.9E-17 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS10070 5d9fbf3c66f8d8469dc91140cffc7ed8 285 Gene3D G3DSA:3.40.190.10 2 276 9.4E-5 T 29-03-2018 CFE88_RS02475 80456980f1930a45922c7b87257ba817 147 Pfam PF06338 ComK protein 25 142 1.6E-7 T 29-03-2018 IPR010461 Competence protein ComK GO:0030420 CFE88_RS06485 aaca18c1c2d96f3c5bc5980b11eff684 195 Pfam PF16883 Domain of unknown function (DUF5080) 4 194 6.1E-54 T 29-03-2018 IPR031689 Protein of unknown function DUF5080 CFE88_RS06350 5cc61cd115e9978c1709d9508d27c1ae 334 Gene3D G3DSA:1.20.120.20 15 334 1.7E-5 T 29-03-2018 CFE88_RS06100 59e6a29c1f837ab665de1b34cf1bcb4d 335 Pfam PF01757 Acyltransferase family 9 313 1.3E-21 T 29-03-2018 IPR002656 Acyltransferase 3 GO:0016747 CFE88_RS06185 e88663e7fb2d5863ca903edb7f8da2aa 294 Pfam PF00487 Fatty acid desaturase 24 263 7.0E-36 T 29-03-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CFE88_RS06625 fa4d95983246b953de37fd84583a0f9e 123 Pfam PF13038 Domain of unknown function (DUF3899) 32 120 9.8E-26 T 29-03-2018 IPR025007 Domain of unknown function DUF3899 CFE88_RS11945 b0ffb08f6c27704f1f8f81ca17accece 272 Pfam PF02517 CAAX protease self-immunity 168 253 3.6E-5 T 29-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CFE88_RS06235 57c82a5d126a69486514e4a56006e026 61 Pfam PF09953 Uncharacterized protein conserved in bacteria (DUF2187) 3 57 6.8E-28 T 29-03-2018 IPR018690 Protein of unknown function DUF2187 CFE88_RS06640 290173bdebb058aef67e8050312aa8b6 64 Pfam PF11151 Protein of unknown function (DUF2929) 1 56 7.6E-20 T 29-03-2018 IPR021324 Protein of unknown function DUF2929 CFE88_RS11800 4a2f47dbff95d67c71f115c858feb0ad 610 Pfam PF13515 Fusaric acid resistance protein-like 319 445 5.4E-18 T 29-03-2018 CFE88_RS06205 7dfffe1a8547df12639a9ba55a85fb63 87 Pfam PF01076 Plasmid recombination enzyme 2 70 2.2E-22 T 29-03-2018 IPR001668 Plasmid recombination enzyme GO:0003677|GO:0005727|GO:0006310 CFE88_RS07070 844bc31f569d2891722dff4c94291889 62 Gene3D G3DSA:1.20.1070.10 1 62 7.8E-4 T 29-03-2018 CFE88_RS08370 a5a276bff10d14298e1b0f59f8c5f7a2 120 PIRSF PIRSF032370 1 120 2.8E-59 T 29-03-2018 IPR016994 Uncharacterised conserved protein UCP032370, VraC CFE88_RS00375 d5ec48362b513ae4cf26968f373f391d 164 Pfam PF09685 Domain of unknown function (DUF4870) 45 163 8.9E-23 T 29-03-2018 IPR019109 Protein of unknown function DUF4870 CFE88_RS03920 a82a728aa1f55159bf517bc29128640d 197 Pfam PF07187 Protein of unknown function (DUF1405) 26 183 1.8E-51 T 29-03-2018 IPR009845 Protein of unknown function DUF1405 CFE88_RS04870 4cee53d1849cffbf1b3ef00f8d150e64 64 Pfam PF06900 Protein of unknown function (DUF1270) 1 54 5.7E-8 T 29-03-2018 IPR009682 Protein of unknown function DUF1270 CFE88_RS08320 b5f724082fe515833672dcc5574c113c 150 Pfam PF12821 Threonine/Serine exporter, ThrE 6 133 3.5E-40 T 29-03-2018 IPR024528 Threonine/Serine exporter, ThrE CFE88_RS06380 07445d66fd9100ed13b5febdd69cf116 136 Pfam PF11337 Protein of unknown function (DUF3139) 9 92 1.3E-10 T 29-03-2018 IPR021486 Protein of unknown function DUF3139 CFE88_RS05915 c5e19f602a859b4f9c58304133dd5afa 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 327 2.1E-38 T 29-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CFE88_RS05320 170d706f642c960f88a28ef8c98df957 124 Pfam PF03780 Asp23 family, cell envelope-related function 9 116 3.1E-31 T 29-03-2018 IPR005531 Alkaline shock protein Asp23 CFE88_RS00935 c35b366e3aa463ac14809c4131cd2f7a 156 Pfam PF17080 Multidrug Resistance efflux pump 14 155 1.5E-59 T 29-03-2018 IPR031396 Multidrug resistance efflux pump SepA CFE88_RS00175 e7d1cae685412e0c5633f16e28b2aa06 190 Pfam PF05656 Protein of unknown function (DUF805) 18 171 3.4E-19 T 29-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 CFE88_RS07460 1d71f16da4f019f532170d0e20242bec 253 Pfam PF06738 Putative threonine/serine exporter 15 252 4.9E-71 T 29-03-2018 IPR010619 Putative threonine/serine exporter CFE88_RS08335 3b8d4c69ee8456cd8d43f76a2925d3e0 122 Pfam PF17261 Family of unknown function (DUF5327) 6 122 1.1E-10 T 29-03-2018 IPR035218 Protein of unknown function DUF5327 CFE88_RS07865 49d73203dc42360645995b35a3e79bac 162 Pfam PF04306 Protein of unknown function (DUF456) 22 157 2.5E-35 T 29-03-2018 IPR007403 Protein of unknown function DUF456 CFE88_RS06885 e1c9bdaf8334d4000425ce83e8c209b6 88 Pfam PF11256 Protein of unknown function (DUF3055) 6 85 1.3E-34 T 29-03-2018 IPR021415 Protein of unknown function DUF3055 CFE88_RS00405 bd3dd652f0b6f06c757bf1c97be7e98d 107 Pfam PF14470 Bacterial PH domain 12 103 1.9E-14 T 29-03-2018 CFE88_RS08140 413d81f861f8b10509a2da9f42dbd154 239 SUPERFAMILY SSF103473 63 231 1.7E-5 T 29-03-2018 IPR020846 Major facilitator superfamily domain CFE88_RS04840 196148df571ca77b1cf395962abd1f88 94 Pfam PF07768 PVL ORF-50-like family 9 88 8.8E-5 T 29-03-2018 IPR011688 PVL Orf50 family CFE88_RS02395 aa8e8728bf80ed198b8beaf232682d02 221 Pfam PF07553 Host cell surface-exposed lipoprotein 172 219 8.0E-23 T 29-03-2018 IPR011434 Domain of unknown function DUF1535 CFE88_RS02395 aa8e8728bf80ed198b8beaf232682d02 221 Pfam PF07553 Host cell surface-exposed lipoprotein 125 169 3.6E-22 T 29-03-2018 IPR011434 Domain of unknown function DUF1535 CFE88_RS03610 b34c3cd056fa8d4cb5eb559c0ca50c4e 192 Gene3D G3DSA:1.20.5.170 22 63 7.5E-5 T 29-03-2018 CFE88_RS01145 c1904f7a0c15389def6216d8d6ff7ffe 173 Pfam PF10740 Domain of unknown function (DUF2529) 1 168 6.7E-60 T 29-03-2018 IPR019676 Domain of unknown function (DUF2529) CFE88_RS10015 d89263efb63adbb85c139d413089181f 294 Pfam PF03773 Predicted permease 7 291 1.5E-56 T 29-03-2018 IPR005524 Predicted permease DUF318 CFE88_RS08940 7417b0307e9240a6d1d800545a0c46b3 267 Pfam PF04468 PSP1 C-terminal conserved region 61 146 2.3E-25 T 29-03-2018 IPR007557 PSP1, C-terminal CFE88_RS00070 fe96c8e822f26ddb4726c023d0fbd51e 350 Pfam PF02687 FtsX-like permease family 257 342 5.6E-9 T 29-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CFE88_RS11015 ee9506b79e96ff7b1c2ad3924539f777 129 Pfam PF13273 Protein of unknown function (DUF4064) 1 103 3.0E-12 T 29-03-2018 IPR025273 Domain of unknown function DUF4064 CFE88_RS07085 03c4c2d893c5776d104d9aa475346e24 248 Pfam PF05908 Poly-gamma-glutamate hydrolase 45 238 5.1E-69 T 29-03-2018 IPR008585 Poly-gamma-glutamate hydrolase CFE88_RS04785 198a272191384a64eebddfc1d5b38270 193 Pfam PF14265 Domain of unknown function (DUF4355) 29 155 8.5E-30 T 29-03-2018 IPR025580 Protein of unknown function DUF4355 CFE88_RS11020 989ca30d5aaf5a86e03fdc0a80c71070 130 Pfam PF16894 Domain of unknown function (DUF5084) 1 130 1.8E-65 T 29-03-2018 IPR031666 Protein of unknown function DUF5084 CFE88_RS11525 9131e3defe59ff2180c4eccee9c3e739 154 Gene3D G3DSA:3.40.1440.10 30 152 2.1E-8 T 29-03-2018 IPR000305 GIY-YIG nuclease superfamily CFE88_RS07930 af39571813dfb78d4fa275a9b0562558 336 Pfam PF01384 Phosphate transporter family 22 324 1.2E-90 T 29-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CFE88_RS02005 4b0826691f09e65ad9ef4e0761d3864d 364 Pfam PF06081 Aromatic acid exporter family member 1 2 144 7.8E-26 T 29-03-2018 IPR010343 Aromatic acid exporter family member 1 CFE88_RS09200 7bff1e9c85840c7c4df57f62ef99fc6e 113 Gene3D G3DSA:1.10.10.10 40 111 1.6E-4 T 29-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain CFE88_RS00235 8715514af372d1b149803e90f444a918 433 Pfam PF03553 Na+/H+ antiporter family 33 211 8.8E-10 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CFE88_RS00235 8715514af372d1b149803e90f444a918 433 Pfam PF03553 Na+/H+ antiporter family 237 424 1.8E-12 T 29-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CFE88_RS10970 085f637c6a46229b056db960bd071d18 150 Pfam PF13930 DNA/RNA non-specific endonuclease 9 138 3.3E-35 T 29-03-2018 CFE88_RS00575 9dc792a9141314c43d920aca32863ec4 56 Gene3D G3DSA:1.20.58.130 4 56 6.6E-6 T 29-03-2018 CFE88_RS00900 ad69df8660d54a432c231e87a48930f0 457 Pfam PF07670 Nucleoside recognition 142 236 5.0E-8 T 29-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936