locus-tag class description SE0001 PF00308 Bacterial dnaA protein SE0001 PF08299 Bacterial dnaA protein helix-turn-helix SE0001 PF11638 DnaA N-terminal domain SE0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SE0002 PF02767 DNA polymerase III beta subunit, central domain SE0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SE0003 PF02463 RecF/RecN/SMC N terminal domain SE0004 PF01751 Toprim domain SE0004 PF00986 DNA gyrase B subunit, carboxyl terminus SE0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0004 PF00204 DNA gyrase B SE0005 PF03989 DNA gyrase C-terminal domain, beta-propeller SE0005 PF00521 DNA gyrase/topoisomerase IV, subunit A SE0006 PF01256 Carbohydrate kinase SE0007 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SE0007 PF02403 Seryl-tRNA synthetase N-terminal domain SE0008 PF03372 Endonuclease/Exonuclease/phosphatase family SE0011 PF00561 alpha/beta hydrolase fold SE0013 PF02272 DHHA1 domain SE0013 PF01368 DHH family SE0014 PF01281 Ribosomal protein L9, N-terminal domain SE0014 PF03948 Ribosomal protein L9, C-terminal domain SE0015 PF03796 DnaB-like helicase C terminal domain SE0015 PF00772 DnaB-like helicase N terminal domain SE0016 PF00709 Adenylosuccinate synthetase SE0018 PF00486 Transcriptional regulatory protein, C terminal SE0018 PF00072 Response regulator receiver domain SE0019 PF00512 His Kinase A (phospho-acceptor) domain SE0019 PF00989 PAS fold SE0019 PF00672 HAMP domain SE0019 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0020 PF07435 YycH protein SE0022 PF00753 Metallo-beta-lactamase superfamily SE0023 PF02590 Predicted SPOUT methyltransferase SE0025 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE0025 PF00535 Glycosyl transferase family 2 SE0026 PF13302 Acetyltransferase (GNAT) domain SE0034 PF02557 D-alanyl-D-alanine carboxypeptidase SE0035 PF00768 D-alanyl-D-alanine carboxypeptidase SE0035 PF07943 Penicillin-binding protein 5, C-terminal domain SE0043 PF18766 SWI2/SNF2 ATPase SE0043 PF12008 Type I restriction and modification enzyme - subunit R C terminal SE0043 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SE0046 PF13302 Acetyltransferase (GNAT) domain SE0056 PF00239 Resolvase, N terminal domain SE0056 PF07508 Recombinase SE0056 PF13408 Recombinase zinc beta ribbon domain SE0071 PF13610 DDE domain SE0072 PF01252 Signal peptidase (SPase) II SE0073 PF01022 Bacterial regulatory protein, arsR family SE0075 PF00403 Heavy-metal-associated domain SE0077 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0077 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0079 PF13610 DDE domain SE0080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0081 PF13411 MerR HTH family regulatory protein SE0085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0085 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0085 PF00403 Heavy-metal-associated domain SE0086 PF12324 Helix-turn-helix domain of alkylmercury lyase SE0086 PF03243 Alkylmercury lyase SE0090 PF13610 DDE domain SE0091 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SE0091 PF12008 Type I restriction and modification enzyme - subunit R C terminal SE0091 PF18766 SWI2/SNF2 ATPase SE0094 PF00005 ABC transporter SE0096 PF16884 N-terminal domain of oxidoreductase SE0096 PF00107 Zinc-binding dehydrogenase SE0101 PF13276 HTH-like domain SE0101 PF00665 Integrase core domain SE0101 PF13333 Integrase core domain SE0102 PF00696 Amino acid kinase family SE0103 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SE0103 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SE0104 PF00027 Cyclic nucleotide-binding domain SE0105 PF13520 Amino acid permease SE0107 PF02863 Arginine repressor, C-terminal domain SE0107 PF01316 Arginine repressor, DNA binding domain SE0112 PF00282 Pyridoxal-dependent decarboxylase conserved domain SE0114 PF04507 Csa1 family SE0115 PF04055 Radical SAM superfamily SE0115 PF06463 Molybdenum Cofactor Synthesis C SE0117 PF13732 Domain of unknown function (DUF4162) SE0117 PF00005 ABC transporter SE0120 PF00072 Response regulator receiver domain SE0120 PF00486 Transcriptional regulatory protein, C terminal SE0121 PF18719 ArlS sensor domain SE0121 PF00512 His Kinase A (phospho-acceptor) domain SE0121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0127 PF07731 Multicopper oxidase SE0127 PF07732 Multicopper oxidase SE0128 PF07563 Protein of unknown function (DUF1541) SE0129 PF00753 Metallo-beta-lactamase superfamily SE0129 PF16123 Hydroxyacylglutathione hydrolase C-terminus SE0130 PF13686 DsrE/DsrF/DrsH-like family SE0132 PF02583 Metal-sensitive transcriptional repressor SE0133 PF01925 Sulfite exporter TauE/SafE SE0134 PF01451 Low molecular weight phosphotyrosine protein phosphatase SE0135 PF02040 Arsenical pump membrane protein SE0136 PF01022 Bacterial regulatory protein, arsR family SE0137 PF02374 Anion-transporting ATPase SE0138 PF06953 Arsenical resistance operon trans-acting repressor ArsD SE0139 PF01022 Bacterial regulatory protein, arsR family SE0140 PF03773 Predicted permease SE0142 PF04507 Csa1 family SE0144 PF04507 Csa1 family SE0145 PF04507 Csa1 family SE0146 PF00924 Mechanosensitive ion channel SE0147 PF05116 Sucrose-6F-phosphate phosphohydrolase SE0156 PF01207 Dihydrouridine synthase (Dus) SE0157 PF06039 Malate:quinone oxidoreductase (Mqo) SE0161 PF13333 Integrase core domain SE0161 PF13276 HTH-like domain SE0161 PF00665 Integrase core domain SE0163 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SE0164 PF07690 Major Facilitator Superfamily SE0165 PF12833 Helix-turn-helix domain SE0165 PF00072 Response regulator receiver domain SE0166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0166 PF06580 Histidine kinase SE0168 PF00535 Glycosyl transferase family 2 SE0168 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE0175 PF04650 YSIRK type signal peptide SE0175 PF00746 LPXTG cell wall anchor motif SE0175 PF17041 E domain SE0175 PF07501 G5 domain SE0180 PF00202 Aminotransferase class-III SE0181 PF00155 Aminotransferase class I and II SE0182 PF03744 6-carboxyhexanoate--CoA ligase SE0184 PF14731 Staphopain proregion SE0184 PF05543 Staphopain peptidase C47 SE0185 PF04650 YSIRK type signal peptide SE0186 PF04507 Csa1 family SE0187 PF04507 Csa1 family SE0188 PF07683 Cobalamin synthesis protein cobW C-terminal domain SE0188 PF02492 CobW/HypB/UreG, nucleotide-binding domain SE0194 PF02424 ApbE family SE0195 PF03358 NADPH-dependent FMN reductase SE0195 PF04205 FMN-binding domain SE0195 PF00890 FAD binding domain SE0196 PF07690 Major Facilitator Superfamily SE0198 PF00005 ABC transporter SE0198 PF12857 TOBE-like domain SE0203 PF10100 Staphylopine dehydrogenase SE0205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SE0206 PF00528 Binding-protein-dependent transport system inner membrane component SE0208 PF00528 Binding-protein-dependent transport system inner membrane component SE0208 PF12911 N-terminal TM domain of oligopeptide transport permease C SE0209 PF00005 ABC transporter SE0210 PF00005 ABC transporter SE0211 PF07690 Major Facilitator Superfamily SE0212 PF00005 ABC transporter SE0214 PF01228 Glycine radical SE0214 PF02901 Pyruvate formate lyase-like SE0215 PF04055 Radical SAM superfamily SE0216 PF07687 Peptidase dimerisation domain SE0216 PF01546 Peptidase family M20/M25/M40 SE0217 PF05525 Branched-chain amino acid transport protein SE0218 PF00440 Bacterial regulatory proteins, tetR family SE0218 PF17932 Tetracyclin repressor-like, C-terminal domain SE0219 PF05853 beta-keto acid cleavage enzyme SE0220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SE0220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SE0222 PF00005 ABC transporter SE0222 PF00571 CBS domain SE0223 PF00528 Binding-protein-dependent transport system inner membrane component SE0224 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SE0225 PF00528 Binding-protein-dependent transport system inner membrane component SE0226 PF00756 Putative esterase SE0226 PF01476 LysM domain SE0227 PF03606 C4-dicarboxylate anaerobic carrier SE0228 PF00696 Amino acid kinase family SE0229 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SE0229 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SE0231 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SE0232 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SE0234 PF06968 Biotin and Thiamin Synthesis associated domain SE0234 PF04055 Radical SAM superfamily SE0235 PF00465 Iron-containing alcohol dehydrogenase SE0236 PF02733 Dak1 domain SE0237 PF02734 DAK2 domain SE0238 PF03610 PTS system fructose IIA component SE0241 PF07690 Major Facilitator Superfamily SE0243 PF00668 Condensation domain SE0243 PF00550 Phosphopantetheine attachment site SE0243 PF00501 AMP-binding enzyme SE0243 PF00975 Thioesterase domain SE0243 PF13193 AMP-binding enzyme C-terminal domain SE0245 PF04650 YSIRK type signal peptide SE0247 PF00083 Sugar (and other) transporter SE0250 PF00892 EamA-like transporter family SE0251 PF09084 NMT1/THI5 like SE0252 PF00939 Sodium:sulfate symporter transmembrane region SE0253 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0253 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0254 PF00676 Dehydrogenase E1 component SE0255 PF02780 Transketolase, C-terminal domain SE0255 PF02779 Transketolase, pyrimidine binding domain SE0256 PF02817 e3 binding domain SE0256 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SE0256 PF00364 Biotin-requiring enzyme SE0259 PF02028 BCCT, betaine/carnitine/choline family transporter SE0261 PF01470 Pyroglutamyl peptidase SE0262 PF12368 Rhodanase C-terminal SE0262 PF17773 UPF0176 acylphosphatase like domain SE0262 PF00581 Rhodanese-like domain SE0263 PF08450 SMP-30/Gluconolactonase/LRE-like region SE0264 PF04264 YceI-like domain SE0266 PF06039 Malate:quinone oxidoreductase (Mqo) SE0268 PF11208 Protein of unknown function (DUF2992) SE0270 PF13393 Histidyl-tRNA synthetase SE0271 PF01634 ATP phosphoribosyltransferase SE0272 PF00815 Histidinol dehydrogenase SE0273 PF00475 Imidazoleglycerol-phosphate dehydratase SE0274 PF00117 Glutamine amidotransferase class-I SE0275 PF00977 Histidine biosynthesis protein SE0276 PF00977 Histidine biosynthesis protein SE0277 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SE0277 PF01502 Phosphoribosyl-AMP cyclohydrolase SE0278 PF00797 N-acetyltransferase SE0281 PF04650 YSIRK type signal peptide SE0283 PF01773 Na+ dependent nucleoside transporter N-terminus SE0283 PF07662 Na+ dependent nucleoside transporter C-terminus SE0284 PF05848 CtsR N-terminal HTH domain SE0284 PF17727 CtsR C-terminal dimerization domain SE0285 PF02151 UvrB/uvrC motif SE0286 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain SE0287 PF00004 ATPase family associated with various cellular activities (AAA) SE0287 PF17871 AAA lid domain SE0287 PF10431 C-terminal, D2-small domain, of ClpB protein SE0287 PF02861 Clp amino terminal domain, pathogenicity island component SE0287 PF07724 AAA domain (Cdc48 subfamily) SE0288 PF18073 Rubredoxin metal binding domain SE0290 PF00749 tRNA synthetases class I (E and Q), catalytic domain SE0291 PF00132 Bacterial transferase hexapeptide (six repeats) SE0292 PF01406 tRNA synthetases class I (C) catalytic domain SE0292 PF09190 DALR domain SE0293 PF00636 Ribonuclease III domain SE0294 PF08032 RNA 2'-O ribose methyltransferase substrate binding SE0294 PF00588 SpoU rRNA Methylase family SE0295 PF05991 YacP-like NYN domain SE0297 PF00471 Ribosomal protein L33 SE0298 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SE0299 PF02357 Transcription termination factor nusG SE0300 PF03946 Ribosomal protein L11, N-terminal domain SE0300 PF00298 Ribosomal protein L11, RNA binding domain SE0301 PF00687 Ribosomal protein L1p/L10e family SE0303 PF00466 Ribosomal protein L10 SE0304 PF00542 Ribosomal protein L7/L12 C-terminal domain SE0304 PF16320 Ribosomal protein L7/L12 dimerisation domain SE0305 PF05175 Methyltransferase small domain SE0306 PF04560 RNA polymerase Rpb2, domain 7 SE0306 PF00562 RNA polymerase Rpb2, domain 6 SE0306 PF04563 RNA polymerase beta subunit SE0306 PF10385 RNA polymerase beta subunit external 1 domain SE0306 PF04565 RNA polymerase Rpb2, domain 3 SE0306 PF04561 RNA polymerase Rpb2, domain 2 SE0307 PF04998 RNA polymerase Rpb1, domain 5 SE0307 PF05000 RNA polymerase Rpb1, domain 4 SE0307 PF04983 RNA polymerase Rpb1, domain 3 SE0307 PF00623 RNA polymerase Rpb1, domain 2 SE0307 PF04997 RNA polymerase Rpb1, domain 1 SE0308 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SE0309 PF00164 Ribosomal protein S12/S23 SE0310 PF00177 Ribosomal protein S7p/S5e SE0311 PF03764 Elongation factor G, domain IV SE0311 PF14492 Elongation Factor G, domain II SE0311 PF00679 Elongation factor G C-terminus SE0311 PF03144 Elongation factor Tu domain 2 SE0311 PF00009 Elongation factor Tu GTP binding domain SE0312 PF00009 Elongation factor Tu GTP binding domain SE0312 PF03144 Elongation factor Tu domain 2 SE0312 PF03143 Elongation factor Tu C-terminal domain SE0313 PF07687 Peptidase dimerisation domain SE0313 PF01546 Peptidase family M20/M25/M40 SE0315 PF02423 Ornithine cyclodeaminase/mu-crystallin family SE0317 PF01370 NAD dependent epimerase/dehydratase family SE0318 PF01063 Amino-transferase class IV SE0319 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SE0320 PF08240 Alcohol dehydrogenase GroES-like domain SE0320 PF00107 Zinc-binding dehydrogenase SE0321 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE0322 PF13419 Haloacid dehalogenase-like hydrolase SE0323 PF00296 Luciferase-like monooxygenase SE0325 PF01712 Deoxynucleoside kinase SE0326 PF01712 Deoxynucleoside kinase SE0327 PF14437 MafB19-like deaminase SE0330 PF03358 NADPH-dependent FMN reductase SE0331 PF00746 LPXTG cell wall anchor motif SE0331 PF17961 Bacterial Ig domain SE0331 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SE0331 PF17210 SdrD B-like domain SE0331 PF04650 YSIRK type signal peptide SE0334 PF02040 Arsenical pump membrane protein SE0335 PF02040 Arsenical pump membrane protein SE0337 PF02649 Type I GTP cyclohydrolase folE2 SE0338 PF02585 GlcNAc-PI de-N-acetylase SE0340 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SE0341 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SE0342 PF01380 SIS domain SE0344 PF00501 AMP-binding enzyme SE0345 PF00501 AMP-binding enzyme SE0346 PF00108 Thiolase, N-terminal domain SE0346 PF02803 Thiolase, C-terminal domain SE0349 PF08543 Phosphomethylpyrimidine kinase SE0351 PF03167 Uracil DNA glycosylase superfamily SE0353 PF04241 Protein of unknown function (DUF423) SE0354 PF13520 Amino acid permease SE0358 PF06778 Chlorite dismutase SE0359 PF01515 Phosphate acetyl/butaryl transferase SE0360 PF03099 Biotin/lipoate A/B protein ligase family SE0361 PF00288 GHMP kinases N terminal domain SE0363 PF00288 GHMP kinases N terminal domain SE0363 PF08544 GHMP kinases C terminal SE0364 PF07293 Protein of unknown function (DUF1450) SE0365 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0367 PF00248 Aldo/keto reductase family SE0369 PF01966 HD domain SE0370 PF08741 YwhD family SE0371 PF01969 Protein of unknown function DUF111 SE0372 PF00731 AIR carboxylase SE0373 PF02540 NAD synthase SE0374 PF09861 Lactate racemase N-terminal domain SE0375 PF08240 Alcohol dehydrogenase GroES-like domain SE0375 PF00107 Zinc-binding dehydrogenase SE0380 PF05746 DALR anticodon binding domain SE0380 PF00750 tRNA synthetases class I (R) SE0380 PF03485 Arginyl tRNA synthetase N terminal domain SE0381 PF10576 Iron-sulfur binding domain of endonuclease III SE0381 PF00633 Helix-hairpin-helix motif SE0381 PF00730 HhH-GPD superfamily base excision DNA repair protein SE0382 PF07739 TipAS antibiotic-recognition domain SE0382 PF13411 MerR HTH family regulatory protein SE0383 PF01497 Periplasmic binding protein SE0384 PF01032 FecCD transport family SE0385 PF13419 Haloacid dehalogenase-like hydrolase SE0389 PF00561 alpha/beta hydrolase fold SE0397 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SE0397 PF00361 Proton-conducting membrane transporter SE0397 PF13244 Domain of unknown function (DUF4040) SE0398 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SE0399 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SE0400 PF00361 Proton-conducting membrane transporter SE0401 PF01899 Na+/H+ ion antiporter subunit SE0402 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SE0403 PF03334 Na+/H+ antiporter subunit SE0404 PF00999 Sodium/hydrogen exchanger family SE0405 PF01297 Zinc-uptake complex component A periplasmic SE0406 PF00950 ABC 3 transport family SE0407 PF00005 ABC transporter SE0408 PF01325 Iron dependent repressor, N-terminal DNA binding domain SE0408 PF02742 Iron dependent repressor, metal binding and dimerisation domain SE0408 PF18357 Diphteria toxin repressor SH3 domain SE0410 PF03808 Glycosyl transferase WecB/TagA/CpsF family SE0411 PF00005 ABC transporter SE0412 PF01061 ABC-2 type transporter SE0413 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE0414 PF00535 Glycosyl transferase family 2 SE0415 PF01467 Cytidylyltransferase-like SE0418 PF00664 ABC transporter transmembrane region SE0418 PF00005 ABC transporter SE0419 PF01773 Na+ dependent nucleoside transporter N-terminus SE0419 PF07662 Na+ dependent nucleoside transporter C-terminus SE0420 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SE0420 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SE0421 PF00005 ABC transporter SE0426 PF01370 NAD dependent epimerase/dehydratase family SE0427 PF00072 Response regulator receiver domain SE0427 PF00486 Transcriptional regulatory protein, C terminal SE0428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0429 PF00005 ABC transporter SE0430 PF02687 FtsX-like permease family SE0431 PF01865 Protein of unknown function DUF47 SE0432 PF01384 Phosphate transporter family SE0433 PF05257 CHAP domain SE0433 PF01476 LysM domain SE0437 PF01709 Transcriptional regulator SE0439 PF04405 Domain of Unknown function (DUF542) SE0439 PF01814 Hemerythrin HHE cation binding domain SE0440 PF00042 Globin SE0440 PF00175 Oxidoreductase NAD-binding domain SE0440 PF00970 Oxidoreductase FAD-binding domain SE0443 PF03466 LysR substrate binding domain SE0443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SE0444 PF07690 Major Facilitator Superfamily SE0445 PF04306 Protein of unknown function (DUF456) SE0450 PF03641 Possible lysine decarboxylase SE0451 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SE0454 PF02673 Bacitracin resistance protein BacA SE0455 PF00005 ABC transporter SE0455 PF00664 ABC transporter transmembrane region SE0456 PF00005 ABC transporter SE0456 PF00664 ABC transporter transmembrane region SE0457 PF01047 MarR family SE0459 PF07683 Cobalamin synthesis protein cobW C-terminal domain SE0459 PF02492 CobW/HypB/UreG, nucleotide-binding domain SE0461 PF00056 lactate/malate dehydrogenase, NAD binding domain SE0461 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SE0462 PF00939 Sodium:sulfate symporter transmembrane region SE0463 PF00875 DNA photolyase SE0463 PF03441 FAD binding domain of DNA photolyase SE0466 PF07690 Major Facilitator Superfamily SE0468 PF04073 Aminoacyl-tRNA editing domain SE0470 PF00455 DeoR C terminal sensor domain SE0470 PF08220 DeoR-like helix-turn-helix domain SE0471 PF00294 pfkB family carbohydrate kinase SE0472 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SE0472 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SE0473 PF01979 Amidohydrolase family SE0474 PF03471 Transporter associated domain SE0474 PF01595 Cyclin M transmembrane N-terminal domain SE0474 PF00571 CBS domain SE0475 PF00248 Aldo/keto reductase family SE0477 PF00535 Glycosyl transferase family 2 SE0478 PF00512 His Kinase A (phospho-acceptor) domain SE0478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE0479 PF00486 Transcriptional regulatory protein, C terminal SE0479 PF00072 Response regulator receiver domain SE0485 PF04055 Radical SAM superfamily SE0486 PF01242 6-pyruvoyl tetrahydropterin synthase SE0487 PF06508 Queuosine biosynthesis protein QueC SE0488 PF00117 Glutamine amidotransferase class-I SE0489 PF00425 chorismate binding enzyme SE0489 PF04715 Anthranilate synthase component I, N terminal region SE0492 PF02682 Carboxyltransferase domain, subdomain C and D SE0494 PF00884 Sulfatase SE0499 PF02535 ZIP Zinc transporter SE0500 PF00005 ABC transporter SE0500 PF16326 ABC transporter C-terminal domain SE0500 PF12848 ABC transporter SE0501 PF00270 DEAD/DEAH box helicase SE0501 PF00271 Helicase conserved C-terminal domain SE0501 PF00570 HRDC domain SE0501 PF16124 RecQ zinc-binding SE0501 PF09382 RQC domain SE0502 PF00005 ABC transporter SE0502 PF00571 CBS domain SE0503 PF00528 Binding-protein-dependent transport system inner membrane component SE0504 PF00155 Aminotransferase class I and II SE0505 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) SE0506 PF00465 Iron-containing alcohol dehydrogenase SE0506 PF00171 Aldehyde dehydrogenase family SE0507 PF00781 Diacylglycerol kinase catalytic domain SE0509 PF00854 POT family SE0510 PF14489 QueF-like protein SE0512 PF07972 NrdI Flavodoxin like SE0513 PF08343 Ribonucleotide reductase N-terminal SE0513 PF02867 Ribonucleotide reductase, barrel domain SE0513 PF00317 Ribonucleotide reductase, all-alpha domain SE0514 PF00268 Ribonucleotide reductase, small chain SE0515 PF01032 FecCD transport family SE0516 PF01032 FecCD transport family SE0517 PF00005 ABC transporter SE0520 PF01565 FAD binding domain SE0520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SE0524 PF02595 Glycerate kinase family SE0525 PF01546 Peptidase family M20/M25/M40 SE0525 PF07687 Peptidase dimerisation domain SE0528 PF00990 Diguanylate cyclase, GGDEF domain SE0528 PF07694 5TMR of 5TMR-LYT SE0529 PF00953 Glycosyl transferase family 4 SE0530 PF01205 Uncharacterized protein family UPF0029 SE0530 PF09186 Domain of unknown function (DUF1949) SE0531 PF02645 Uncharacterised protein, DegV family COG1307 SE0534 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SE0534 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SE0535 PF07517 SecA DEAD-like domain SE0535 PF02810 SEC-C motif SE0535 PF01043 SecA preprotein cross-linking domain SE0535 PF07516 SecA Wing and Scaffold domain SE0536 PF03462 PCRF domain SE0536 PF00472 RF-1 domain SE0537 PF05257 CHAP domain SE0537 PF01476 LysM domain SE0541 PF17757 UvrB interaction domain SE0541 PF12344 Ultra-violet resistance protein B SE0541 PF02151 UvrB/uvrC motif SE0541 PF04851 Type III restriction enzyme, res subunit SE0541 PF00271 Helicase conserved C-terminal domain SE0542 PF00005 ABC transporter SE0542 PF17760 UvrA interaction domain SE0542 PF17755 UvrA DNA-binding domain SE0543 PF02603 HPr Serine kinase N terminus SE0543 PF07475 HPr Serine kinase C-terminal domain SE0544 PF01790 Prolipoprotein diacylglyceryl transferase SE0545 PF14602 Hexapeptide repeat of succinyl-transferase SE0547 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0548 PF03668 P-loop ATPase protein family SE0549 PF01933 Uncharacterised protein family UPF0052 SE0550 PF10298 WhiA N-terminal LAGLIDADG-like domain SE0550 PF14527 WhiA LAGLIDADG-like domain SE0550 PF02650 WhiA C-terminal HTH domain SE0551 PF00574 Clp protease SE0553 PF08338 Domain of unknown function (DUF1731) SE0553 PF01370 NAD dependent epimerase/dehydratase family SE0556 PF04198 Putative sugar-binding domain SE0557 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SE0557 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SE0558 PF00162 Phosphoglycerate kinase SE0559 PF00121 Triosephosphate isomerase SE0560 PF01676 Metalloenzyme superfamily SE0560 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SE0561 PF00113 Enolase, C-terminal TIM barrel domain SE0561 PF03952 Enolase, N-terminal domain SE0563 PF03840 Preprotein translocase SecG subunit SE0564 PF12146 Serine aminopeptidase, S33 SE0565 PF17876 Cold shock domain SE0565 PF08206 Ribonuclease B OB domain SE0565 PF00773 RNB domain SE0565 PF00575 S1 RNA binding domain SE0566 PF01668 SmpB protein SE0571 PF02386 Cation transport protein SE0577 PF16916 Dimerisation domain of Zinc Transporter SE0577 PF01545 Cation efflux family SE0578 PF00313 'Cold-shock' DNA-binding domain SE0581 PF05908 Poly-gamma-glutamate hydrolase SE0587 PF00300 Histidine phosphatase superfamily (branch 1) SE0591 PF02566 OsmC-like protein SE0592 PF01487 Type I 3-dehydroquinase SE0594 PF00085 Thioredoxin SE0595 PF03960 ArsC family SE0596 PF01597 Glycine cleavage H-protein SE0598 PF01751 Toprim domain SE0600 PF00005 ABC transporter SE0600 PF09383 NIL domain SE0601 PF00528 Binding-protein-dependent transport system inner membrane component SE0602 PF03180 NLPA lipoprotein SE0604 PF05532 CsbD-like SE0606 PF00005 ABC transporter SE0607 PF01458 Uncharacterized protein family (UPF0051) SE0608 PF00266 Aminotransferase class-V SE0609 PF01592 NifU-like N terminal domain SE0610 PF01458 Uncharacterized protein family (UPF0051) SE0613 PF01595 Cyclin M transmembrane N-terminal domain SE0613 PF00571 CBS domain SE0613 PF03471 Transporter associated domain SE0614 PF01904 Protein of unknown function DUF72 SE0615 PF01925 Sulfite exporter TauE/SafE SE0616 PF02872 5'-nucleotidase, C-terminal domain SE0617 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SE0617 PF04055 Radical SAM superfamily SE0618 PF06265 Protein of unknown function (DUF1027) SE0620 PF01934 Protein of unknown function DUF86 SE0621 PF13344 Haloacid dehalogenase-like hydrolase SE0622 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE0622 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE0624 PF13193 AMP-binding enzyme C-terminal domain SE0624 PF00501 AMP-binding enzyme SE0625 PF03062 MBOAT, membrane-bound O-acyltransferase family SE0626 PF00550 Phosphopantetheine attachment site SE0627 PF04914 DltD protein SE0630 PF01106 NifU-like domain SE0631 PF07315 Protein of unknown function (DUF1462) SE0632 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0633 PF07293 Protein of unknown function (DUF1450) SE0634 PF01521 Iron-sulphur cluster biosynthesis SE0635 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0636 PF02789 Cytosol aminopeptidase family, N-terminal domain SE0636 PF00883 Cytosol aminopeptidase family, catalytic domain SE0637 PF13726 Na+-H+ antiporter family SE0637 PF03553 Na+/H+ antiporter family SE0638 PF03061 Thioesterase superfamily SE0640 PF03334 Na+/H+ antiporter subunit SE0641 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SE0642 PF01899 Na+/H+ ion antiporter subunit SE0643 PF00361 Proton-conducting membrane transporter SE0644 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SE0645 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SE0646 PF00361 Proton-conducting membrane transporter SE0646 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SE0646 PF13244 Domain of unknown function (DUF4040) SE0648 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SE0649 PF00575 S1 RNA binding domain SE0649 PF03725 3' exoribonuclease family, domain 2 SE0649 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SE0649 PF01138 3' exoribonuclease family, domain 1 SE0649 PF00013 KH domain SE0650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SE0653 PF00202 Aminotransferase class-III SE0654 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SE0654 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SE0655 PF03009 Glycerophosphoryl diester phosphodiesterase family SE0656 PF14698 Argininosuccinate lyase C-terminal SE0656 PF00206 Lyase SE0657 PF00764 Arginosuccinate synthase SE0658 PF00342 Phosphoglucose isomerase SE0659 PF09335 SNARE associated Golgi protein SE0660 PF10502 Signal peptidase, peptidase S26 SE0662 PF10502 Signal peptidase, peptidase S26 SE0663 PF12705 PD-(D/E)XK nuclease superfamily SE0663 PF13361 UvrD-like helicase C-terminal domain SE0664 PF12705 PD-(D/E)XK nuclease superfamily SE0664 PF13361 UvrD-like helicase C-terminal domain SE0664 PF00580 UvrD/REP helicase N-terminal domain SE0665 PF01557 Fumarylacetoacetate (FAA) hydrolase family SE0666 PF07457 Protein of unknown function (DUF1516) SE0669 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0669 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0672 PF01883 Iron-sulfur cluster assembly protein SE0673 PF01757 Acyltransferase family SE0674 PF00004 ATPase family associated with various cellular activities (AAA) SE0674 PF10431 C-terminal, D2-small domain, of ClpB protein SE0674 PF02861 Clp amino terminal domain, pathogenicity island component SE0674 PF17871 AAA lid domain SE0674 PF07724 AAA domain (Cdc48 subfamily) SE0677 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SE0677 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SE0678 PF02801 Beta-ketoacyl synthase, C-terminal domain SE0678 PF00109 Beta-ketoacyl synthase, N-terminal domain SE0680 PF00528 Binding-protein-dependent transport system inner membrane component SE0681 PF00528 Binding-protein-dependent transport system inner membrane component SE0681 PF12911 N-terminal TM domain of oligopeptide transport permease C SE0682 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SE0682 PF00005 ABC transporter SE0683 PF00005 ABC transporter SE0683 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SE0684 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SE0685 PF00579 tRNA synthetases class I (W and Y) SE0686 PF03960 ArsC family SE0688 PF05389 Negative regulator of genetic competence (MecA) SE0690 PF08439 Oligopeptidase F SE0690 PF01432 Peptidase family M3 SE0692 PF01152 Bacterial-like globin SE0695 PF04607 Region found in RelA / SpoT proteins SE0696 PF01513 ATP-NAD kinase SE0697 PF00849 RNA pseudouridylate synthase SE0698 PF00571 CBS domain SE0698 PF01769 Divalent cation transporter SE0698 PF03448 MgtE intracellular N domain SE0699 PF02080 TrkA-C domain SE0699 PF00999 Sodium/hydrogen exchanger family SE0699 PF02254 TrkA-N domain SE0703 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SE0703 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SE0704 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SE0704 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SE0706 PF17760 UvrA interaction domain SE0706 PF00005 ABC transporter SE0706 PF17755 UvrA DNA-binding domain SE0707 PF17760 UvrA interaction domain SE0707 PF17755 UvrA DNA-binding domain SE0707 PF17760 UvrA interaction domain SE0707 PF17755 UvrA DNA-binding domain SE0709 PF08240 Alcohol dehydrogenase GroES-like domain SE0709 PF13823 Alcohol dehydrogenase GroES-associated SE0709 PF00107 Zinc-binding dehydrogenase SE0710 PF02796 Helix-turn-helix domain of resolvase SE0710 PF00239 Resolvase, N terminal domain SE0711 PF01797 Transposase IS200 like SE0713 PF01594 AI-2E family transporter SE0714 PF00756 Putative esterase SE0716 PF07690 Major Facilitator Superfamily SE0717 PF04101 Glycosyltransferase family 28 C-terminal domain SE0717 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase SE0718 PF01225 Mur ligase family, catalytic domain SE0718 PF08245 Mur ligase middle domain SE0718 PF02875 Mur ligase family, glutamate ligase domain SE0720 PF16658 Class II release factor RF3, C-terminal domain SE0720 PF00009 Elongation factor Tu GTP binding domain SE0720 PF03144 Elongation factor Tu domain 2 SE0721 PF03741 Integral membrane protein TerC family SE0722 PF13180 PDZ domain SE0723 PF13180 PDZ domain SE0724 PF02386 Cation transport protein SE0725 PF02872 5'-nucleotidase, C-terminal domain SE0725 PF00149 Calcineurin-like phosphoesterase SE0727 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) SE0728 PF10437 Bacterial lipoate protein ligase C-terminus SE0728 PF03099 Biotin/lipoate A/B protein ligase family SE0732 PF01076 Plasmid recombination enzyme SE0735 PF01810 LysE type translocator SE0736 PF01810 LysE type translocator SE0738 PF05154 TM2 domain SE0740 PF13302 Acetyltransferase (GNAT) domain SE0741 PF01040 UbiA prenyltransferase family SE0743 PF00425 chorismate binding enzyme SE0744 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SE0744 PF16582 Middle domain of thiamine pyrophosphate SE0744 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE0745 PF12697 Alpha/beta hydrolase family SE0746 PF00378 Enoyl-CoA hydratase/isomerase SE0747 PF00155 Aminotransferase class I and II SE0748 PF01757 Acyltransferase family SE0749 PF01047 MarR family SE0750 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SE0750 PF13457 GW (Gly-Tryp) dipeptide domain SE0751 PF13673 Acetyltransferase (GNAT) domain SE0752 PF10804 Protein of unknown function (DUF2538) SE0753 PF03816 Cell envelope-related transcriptional attenuator domain SE0754 PF00144 Beta-lactamase SE0755 PF01156 Inosine-uridine preferring nucleoside hydrolase SE0756 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SE0757 PF00510 Cytochrome c oxidase subunit III SE0758 PF00115 Cytochrome C and Quinol oxidase polypeptide I SE0759 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SE0761 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SE0761 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SE0762 PF00731 AIR carboxylase SE0763 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SE0763 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE0763 PF02222 ATP-grasp domain SE0764 PF01259 SAICAR synthetase SE0765 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SE0767 PF00586 AIR synthase related protein, N-terminal domain SE0767 PF02769 AIR synthase related protein, C-terminal domain SE0767 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SE0768 PF13537 Glutamine amidotransferase domain SE0768 PF00156 Phosphoribosyl transferase domain SE0769 PF00586 AIR synthase related protein, N-terminal domain SE0769 PF02769 AIR synthase related protein, C-terminal domain SE0770 PF00551 Formyl transferase SE0771 PF02142 MGS-like domain SE0771 PF01808 AICARFT/IMPCHase bienzyme SE0772 PF02844 Phosphoribosylglycinamide synthetase, N domain SE0772 PF02843 Phosphoribosylglycinamide synthetase, C domain SE0772 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SE0773 PF02361 Cobalt transport protein SE0774 PF00005 ABC transporter SE0776 PF06100 MCRA family SE0779 PF10672 S-adenosylmethionine-dependent methyltransferase SE0779 PF17785 PUA-like domain SE0781 PF00381 PTS HPr component phosphorylation site SE0782 PF00391 PEP-utilising enzyme, mobile domain SE0782 PF05524 PEP-utilising enzyme, N-terminal SE0782 PF02896 PEP-utilising enzyme, TIM barrel domain SE0784 PF01654 Cytochrome bd terminal oxidase subunit I SE0785 PF02322 Cytochrome bd terminal oxidase subunit II SE0786 PF02254 TrkA-N domain SE0786 PF02080 TrkA-C domain SE0787 PF00753 Metallo-beta-lactamase superfamily SE0787 PF17770 Ribonuclease J C-terminal domain SE0787 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SE0788 PF07288 Protein of unknown function (DUF1447) SE0789 PF01327 Polypeptide deformylase SE0791 PF00676 Dehydrogenase E1 component SE0792 PF02779 Transketolase, pyrimidine binding domain SE0792 PF02780 Transketolase, C-terminal domain SE0793 PF02817 e3 binding domain SE0793 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SE0793 PF00364 Biotin-requiring enzyme SE0794 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE0794 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE0795 PF05256 Uncharacterised protein family (UPF0223) SE0797 PF08402 TOBE domain SE0797 PF00005 ABC transporter SE0798 PF00528 Binding-protein-dependent transport system inner membrane component SE0800 PF13416 Bacterial extracellular solute-binding protein SE0803 PF01566 Natural resistance-associated macrophage protein SE0804 PF06335 Protein of unknown function (DUF1054) SE0805 PF00459 Inositol monophosphatase family SE0807 PF00679 Elongation factor G C-terminus SE0807 PF14492 Elongation Factor G, domain II SE0807 PF00009 Elongation factor Tu GTP binding domain SE0807 PF03144 Elongation factor Tu domain 2 SE0811 PF07408 Protein of unknown function (DUF1507) SE0812 PF01098 Cell cycle protein SE0813 PF00682 HMGL-like SE0813 PF02436 Conserved carboxylase domain SE0813 PF00289 Biotin carboxylase, N-terminal domain SE0813 PF02785 Biotin carboxylase C-terminal domain SE0813 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SE0813 PF00364 Biotin-requiring enzyme SE0814 PF02628 Cytochrome oxidase assembly protein SE0815 PF01040 UbiA prenyltransferase family SE0817 PF14504 CAP-associated N-terminal SE0817 PF00188 Cysteine-rich secretory protein family SE0818 PF06133 Control of competence regulator ComK, YlbF/YmcA SE0819 PF03009 Glycerophosphoryl diester phosphodiesterase family SE0821 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SE0824 PF01467 Cytidylyltransferase-like SE0825 PF05636 HIGH Nucleotidyl Transferase SE0827 PF01783 Ribosomal L32p protein family SE0828 PF07501 G5 domain SE0828 PF17041 E domain SE0828 PF04650 YSIRK type signal peptide SE0828 PF00746 LPXTG cell wall anchor motif SE0830 PF08032 RNA 2'-O ribose methyltransferase substrate binding SE0830 PF00588 SpoU rRNA Methylase family SE0831 PF01409 tRNA synthetases class II core domain (F) SE0831 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SE0832 PF03483 B3/4 domain SE0832 PF03484 tRNA synthetase B5 domain SE0832 PF03147 Ferredoxin-fold anticodon binding domain SE0832 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SE0832 PF01588 Putative tRNA binding domain SE0833 PF01351 Ribonuclease HII SE0833 PF11858 Domain of unknown function (DUF3378) SE0834 PF05164 Cell division protein ZapA SE0836 PF14791 DNA polymerase beta thumb SE0836 PF14716 Helix-hairpin-helix domain SE0836 PF02811 PHP domain SE0837 PF00488 MutS domain V SE0837 PF01713 Smr domain SE0838 PF00085 Thioredoxin SE0839 PF02151 UvrB/uvrC motif SE0839 PF08459 UvrC Helix-hairpin-helix N-terminal SE0839 PF01541 GIY-YIG catalytic domain SE0840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SE0841 PF02910 Fumarate reductase flavoprotein C-term SE0841 PF00890 FAD binding domain SE0842 PF13085 2Fe-2S iron-sulfur cluster binding domain SE0842 PF13183 4Fe-4S dicluster domain SE0843 PF01177 Asp/Glu/Hydantoin racemase SE0844 PF01725 Ham1 family SE0848 PF05480 Staphylococcus haemolytic protein SE0849 PF05480 Staphylococcus haemolytic protein SE0850 PF13419 Haloacid dehalogenase-like hydrolase SE0851 PF13673 Acetyltransferase (GNAT) domain SE0852 PF10079 Bacillithiol biosynthesis BshC SE0853 PF02381 MraZ protein, putative antitoxin-like SE0854 PF01795 MraW methylase family SE0855 PF04977 Septum formation initiator SE0856 PF03793 PASTA domain SE0856 PF03717 Penicillin-binding Protein dimerisation domain SE0856 PF00905 Penicillin binding protein transpeptidase domain SE0857 PF00953 Glycosyl transferase family 4 SE0858 PF08245 Mur ligase middle domain SE0858 PF02875 Mur ligase family, glutamate ligase domain SE0859 PF03799 Cell division protein FtsQ SE0859 PF08478 POTRA domain, FtsQ-type SE0860 PF02491 SHS2 domain inserted in FTSA SE0861 PF12327 FtsZ family, C-terminal domain SE0861 PF00091 Tubulin/FtsZ family, GTPase domain SE0862 PF02578 Multi-copper polyphenol oxidoreductase laccase SE0863 PF01168 Alanine racemase, N-terminal domain SE0864 PF04472 Cell division protein SepF SE0865 PF02325 YGGT family SE0867 PF05103 DivIVA protein SE0868 PF06827 Zinc finger found in FPG and IleRS SE0868 PF08264 Anticodon-binding domain of tRNA SE0868 PF00133 tRNA synthetases class I (I, L, M and V) SE0870 PF05257 CHAP domain SE0870 PF01476 LysM domain SE0871 PF01252 Signal peptidase (SPase) II SE0872 PF01479 S4 domain SE0872 PF00849 RNA pseudouridylate synthase SE0873 PF00156 Phosphoribosyl transferase domain SE0875 PF00860 Permease family SE0876 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SE0876 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SE0877 PF01979 Amidohydrolase family SE0878 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SE0878 PF00117 Glutamine amidotransferase class-I SE0879 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SE0879 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SE0879 PF02142 MGS-like domain SE0880 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SE0881 PF00156 Phosphoribosyl transferase domain SE0884 PF05670 NFACT protein RNA binding domain SE0885 PF00625 Guanylate kinase SE0886 PF01192 RNA polymerase Rpb6 SE0887 PF04127 DNA / pantothenate metabolism flavoprotein SE0887 PF02441 Flavoprotein SE0888 PF04851 Type III restriction enzyme, res subunit SE0888 PF17764 3′ DNA-binding domain (3′BD) SE0888 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SE0888 PF18074 Primosomal protein N C-terminal domain SE0888 PF00271 Helicase conserved C-terminal domain SE0890 PF01327 Polypeptide deformylase SE0891 PF00551 Formyl transferase SE0891 PF02911 Formyl transferase, C-terminal domain SE0892 PF01189 16S rRNA methyltransferase RsmB/F SE0892 PF01029 NusB family SE0893 PF04055 Radical SAM superfamily SE0895 PF03793 PASTA domain SE0895 PF00069 Protein kinase domain SE0896 PF16745 RsgA N-terminal domain SE0896 PF03193 RsgA GTPase SE0897 PF00834 Ribulose-phosphate 3 epimerase family SE0899 PF00830 Ribosomal L28 family SE0900 PF03780 Asp23 family, cell envelope-related function SE0901 PF13684 Dihydroxyacetone kinase family SE0901 PF02734 DAK2 domain SE0902 PF17191 RecG wedge domain SE0902 PF00270 DEAD/DEAH box helicase SE0902 PF00271 Helicase conserved C-terminal domain SE0904 PF02504 Fatty acid synthesis protein SE0905 PF00698 Acyl transferase domain SE0907 PF00550 Phosphopantetheine attachment site SE0908 PF00035 Double-stranded RNA binding motif SE0908 PF14622 Ribonuclease-III-like SE0909 PF02463 RecF/RecN/SMC N terminal domain SE0909 PF06470 SMC proteins Flexible Hinge Domain SE0910 PF02881 SRP54-type protein, helical bundle domain SE0910 PF00448 SRP54-type protein, GTPase domain SE0911 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SE0912 PF02978 Signal peptide binding domain SE0912 PF00448 SRP54-type protein, GTPase domain SE0912 PF02881 SRP54-type protein, helical bundle domain SE0913 PF00886 Ribosomal protein S16 SE0914 PF01782 RimM N-terminal domain SE0914 PF05239 PRC-barrel domain SE0915 PF01746 tRNA (Guanine-1)-methyltransferase SE0916 PF01245 Ribosomal protein L19 SE0918 PF09586 Bacterial membrane protein YfhO SE0921 PF01926 50S ribosome-binding GTPase SE0922 PF01351 Ribonuclease HII SE0923 PF00549 CoA-ligase SE0923 PF08442 ATP-grasp domain SE0924 PF00549 CoA-ligase SE0924 PF02629 CoA binding domain SE0925 PF02481 DNA recombination-mediator protein A SE0926 PF01751 Toprim domain SE0926 PF01131 DNA topoisomerase SE0926 PF01396 Topoisomerase DNA binding C4 zinc finger SE0927 PF01134 Glucose inhibited division protein A SE0928 PF02899 Phage integrase, N-terminal SAM-like domain SE0928 PF00589 Phage integrase family SE0929 PF00227 Proteasome subunit SE0930 PF07724 AAA domain (Cdc48 subfamily) SE0930 PF00004 ATPase family associated with various cellular activities (AAA) SE0930 PF10431 C-terminal, D2-small domain, of ClpB protein SE0931 PF06018 CodY GAF-like domain SE0931 PF08222 CodY helix-turn-helix domain SE0932 PF00318 Ribosomal protein S2 SE0933 PF00889 Elongation factor TS SE0934 PF00696 Amino acid kinase family SE0935 PF01765 Ribosome recycling factor SE0936 PF01255 Putative undecaprenyl diphosphate synthase SE0938 PF02163 Peptidase family M50 SE0938 PF13180 PDZ domain SE0939 PF03129 Anticodon binding domain SE0939 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SE0939 PF04073 Aminoacyl-tRNA editing domain SE0940 PF02811 PHP domain SE0940 PF14579 Helix-hairpin-helix motif SE0940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SE0940 PF07733 Bacterial DNA polymerase III alpha NTPase domain SE0940 PF14480 DNA polymerase III polC-type N-terminus I SE0940 PF00929 Exonuclease SE0940 PF11490 DNA polymerase III polC-type N-terminus II SE0941 PF02576 RimP N-terminal domain SE0941 PF17384 RimP C-terminal SH3 domain SE0942 PF13184 NusA-like KH domain SE0942 PF00575 S1 RNA binding domain SE0942 PF08529 NusA N-terminal domain SE0943 PF04296 Protein of unknown function (DUF448) SE0944 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SE0945 PF04760 Translation initiation factor IF-2, N-terminal region SE0945 PF11987 Translation-initiation factor 2 SE0945 PF00009 Elongation factor Tu GTP binding domain SE0947 PF02033 Ribosome-binding factor A SE0948 PF16198 tRNA pseudouridylate synthase B C-terminal domain SE0948 PF01509 TruB family pseudouridylate synthase (N terminal domain) SE0949 PF01687 Riboflavin kinase SE0949 PF06574 FAD synthetase SE0950 PF00312 Ribosomal protein S15 SE0951 PF01138 3' exoribonuclease family, domain 1 SE0951 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SE0951 PF00013 KH domain SE0951 PF03725 3' exoribonuclease family, domain 2 SE0951 PF00575 S1 RNA binding domain SE0952 PF00753 Metallo-beta-lactamase superfamily SE0952 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SE0952 PF17770 Ribonuclease J C-terminal domain SE0953 PF01580 FtsK/SpoIIIE family SE0953 PF09397 Ftsk gamma domain SE0953 PF17854 FtsK alpha domain SE0954 PF00392 Bacterial regulatory proteins, gntR family SE0954 PF07702 UTRA domain SE0955 PF05193 Peptidase M16 inactive domain SE0956 PF00675 Insulinase (Peptidase family M16) SE0956 PF05193 Peptidase M16 inactive domain SE0958 PF11868 Protein of unknown function (DUF3388) SE0960 PF01066 CDP-alcohol phosphatidyltransferase SE0961 PF18146 Damage-inducible protein CinA KH domain SE0961 PF02464 Competence-damaged protein SE0961 PF00994 Probable molybdopterin binding domain SE0962 PF00994 Probable molybdopterin binding domain SE0962 PF18146 Damage-inducible protein CinA KH domain SE0962 PF02464 Competence-damaged protein SE0963 PF00154 recA bacterial DNA recombination protein SE0964 PF01966 HD domain SE0964 PF00013 KH domain SE0964 PF12072 Domain of unknown function (DUF3552) SE0966 PF13277 YmdB-like protein SE0967 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SE0967 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SE0967 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SE0968 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE0969 PF05908 Poly-gamma-glutamate hydrolase SE0971 PF01938 TRAM domain SE0971 PF00919 Uncharacterized protein family UPF0004 SE0971 PF04055 Radical SAM superfamily SE0972 PF06133 Control of competence regulator ComK, YlbF/YmcA SE0974 PF01624 MutS domain I SE0974 PF05188 MutS domain II SE0974 PF05192 MutS domain III SE0974 PF05190 MutS family domain IV SE0974 PF00488 MutS domain V SE0975 PF08676 MutL C terminal dimerisation domain SE0975 PF01119 DNA mismatch repair protein, C-terminal domain SE0976 PF04309 Glycerol-3-phosphate responsive antiterminator SE0977 PF00230 Major intrinsic protein SE0978 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SE0978 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SE0979 PF01266 FAD dependent oxidoreductase SE0979 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SE0980 PF00561 alpha/beta hydrolase fold SE0982 PF17209 Hfq protein SE0983 PF00255 Glutathione peroxidase SE0984 PF13167 GTP-binding GTPase N-terminal SE0984 PF16360 GTP-binding GTPase Middle Region SE0984 PF01926 50S ribosome-binding GTPase SE0985 PF06838 Methionine gamma-lyase SE0986 PF13411 MerR HTH family regulatory protein SE0987 PF00120 Glutamine synthetase, catalytic domain SE0987 PF03951 Glutamine synthetase, beta-Grasp domain SE0997 PF13396 Phospholipase_D-nuclease N-terminal SE0997 PF13091 PLD-like domain SE0998 PF00005 ABC transporter SE1000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1000 PF07730 Histidine kinase SE1000 PF05384 Sensor protein DegS SE1001 PF07730 Histidine kinase SE1002 PF00196 Bacterial regulatory proteins, luxR family SE1002 PF00072 Response regulator receiver domain SE1004 PF00565 Staphylococcal nuclease homologue SE1008 PF00696 Amino acid kinase family SE1008 PF13840 ACT domain SE1009 PF00742 Homoserine dehydrogenase SE1009 PF03447 Homoserine dehydrogenase, NAD binding domain SE1009 PF01842 ACT domain SE1010 PF00291 Pyridoxal-phosphate dependent enzyme SE1011 PF00288 GHMP kinases N terminal domain SE1011 PF08544 GHMP kinases C terminal SE1013 PF01797 Transposase IS200 like SE1015 PF00324 Amino acid permease SE1016 PF06628 Catalase-related immune-responsive SE1016 PF00199 Catalase SE1017 PF00471 Ribosomal protein L33 SE1018 PF00253 Ribosomal protein S14p/S29e SE1019 PF00478 IMP dehydrogenase / GMP reductase domain SE1020 PF14504 CAP-associated N-terminal SE1020 PF00188 Cysteine-rich secretory protein family SE1022 PF01726 LexA DNA binding domain SE1022 PF00717 Peptidase S24-like SE1024 PF05979 Bacterial protein of unknown function (DUF896) SE1025 PF00456 Transketolase, thiamine diphosphate binding domain SE1025 PF02780 Transketolase, C-terminal domain SE1025 PF02779 Transketolase, pyrimidine binding domain SE1027 PF07301 Protein of unknown function (DUF1453) SE1028 PF12320 Type 5 capsule protein repressor C-terminal domain SE1028 PF00149 Calcineurin-like phosphoesterase SE1029 PF13476 AAA domain SE1030 PF01741 Large-conductance mechanosensitive channel, MscL SE1031 PF02028 BCCT, betaine/carnitine/choline family transporter SE1032 PF00694 Aconitase C-terminal domain SE1032 PF00330 Aconitase family (aconitate hydratase) SE1033 PF03061 Thioesterase superfamily SE1035 PF02660 Glycerol-3-phosphate acyltransferase SE1036 PF00986 DNA gyrase B subunit, carboxyl terminus SE1036 PF00204 DNA gyrase B SE1036 PF01751 Toprim domain SE1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1037 PF00521 DNA gyrase/topoisomerase IV, subunit A SE1037 PF03989 DNA gyrase C-terminal domain, beta-propeller SE1038 PF01235 Sodium:alanine symporter family SE1039 PF00874 PRD domain SE1039 PF03123 CAT RNA binding domain SE1040 PF01594 AI-2E family transporter SE1041 PF03706 Lysylphosphatidylglycerol synthase TM region SE1041 PF09924 Uncharacterised conserved protein (DUF2156) SE1042 PF01625 Peptide methionine sulfoxide reductase SE1043 PF03816 Cell envelope-related transcriptional attenuator domain SE1045 PF01361 Tautomerase enzyme SE1046 PF11798 IMS family HHH motif SE1046 PF11799 impB/mucB/samB family C-terminal domain SE1046 PF00817 impB/mucB/samB family SE1047 PF01842 ACT domain SE1047 PF02153 Prephenate dehydrogenase SE1048 PF04715 Anthranilate synthase component I, N terminal region SE1048 PF00425 chorismate binding enzyme SE1049 PF00117 Glutamine amidotransferase class-I SE1049 PF02885 Glycosyl transferase family, helical bundle domain SE1049 PF00591 Glycosyl transferase family, a/b domain SE1050 PF00591 Glycosyl transferase family, a/b domain SE1051 PF00218 Indole-3-glycerol phosphate synthase SE1052 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SE1053 PF00291 Pyridoxal-phosphate dependent enzyme SE1054 PF00290 Tryptophan synthase alpha chain SE1057 PF02388 FemAB family SE1058 PF02388 FemAB family SE1060 PF00005 ABC transporter SE1061 PF00005 ABC transporter SE1062 PF00528 Binding-protein-dependent transport system inner membrane component SE1063 PF00528 Binding-protein-dependent transport system inner membrane component SE1066 PF01895 PhoU domain SE1067 PF00005 ABC transporter SE1068 PF00528 Binding-protein-dependent transport system inner membrane component SE1069 PF00528 Binding-protein-dependent transport system inner membrane component SE1070 PF12849 PBP superfamily domain SE1071 PF13509 S1 domain SE1071 PF17783 CvfB-like winged helix domain SE1072 PF00005 ABC transporter SE1072 PF12848 ABC transporter SE1073 PF13840 ACT domain SE1073 PF01842 ACT domain SE1073 PF00696 Amino acid kinase family SE1074 PF01118 Semialdehyde dehydrogenase, NAD binding domain SE1074 PF02774 Semialdehyde dehydrogenase, dimerisation domain SE1075 PF00701 Dihydrodipicolinate synthetase family SE1076 PF05173 Dihydrodipicolinate reductase, C-terminus SE1076 PF01113 Dihydrodipicolinate reductase, N-terminus SE1077 PF14602 Hexapeptide repeat of succinyl-transferase SE1077 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SE1077 PF00132 Bacterial transferase hexapeptide (six repeats) SE1078 PF07687 Peptidase dimerisation domain SE1078 PF01546 Peptidase family M20/M25/M40 SE1079 PF00842 Alanine racemase, C-terminal domain SE1079 PF01168 Alanine racemase, N-terminal domain SE1080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SE1080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SE1082 PF00005 ABC transporter SE1086 PF00313 'Cold-shock' DNA-binding domain SE1087 PF00708 Acylphosphatase SE1089 PF05816 Toxic anion resistance protein (TelA) SE1090 PF05525 Branched-chain amino acid transport protein SE1091 PF00092 von Willebrand factor type A domain SE1092 PF08406 CbbQ/NirQ/NorQ C-terminal SE1092 PF07728 AAA domain (dynein-related subfamily) SE1096 PF00364 Biotin-requiring enzyme SE1096 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SE1096 PF02817 e3 binding domain SE1097 PF16870 2-oxoglutarate dehydrogenase C-terminal SE1097 PF00676 Dehydrogenase E1 component SE1097 PF02779 Transketolase, pyrimidine binding domain SE1099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1099 PF00512 His Kinase A (phospho-acceptor) domain SE1099 PF18719 ArlS sensor domain SE1100 PF00072 Response regulator receiver domain SE1100 PF00486 Transcriptional regulatory protein, C terminal SE1102 PF00455 DeoR C terminal sensor domain SE1102 PF08220 DeoR-like helix-turn-helix domain SE1103 PF01554 MatE SE1105 PF00528 Binding-protein-dependent transport system inner membrane component SE1107 PF00528 Binding-protein-dependent transport system inner membrane component SE1108 PF03459 TOBE domain SE1108 PF17912 MalK OB fold domain SE1108 PF00005 ABC transporter SE1109 PF01569 PAP2 superfamily SE1110 PF04101 Glycosyltransferase family 28 C-terminal domain SE1110 PF03033 Glycosyltransferase family 28 N-terminal domain SE1113 PF03572 Peptidase family S41 SE1113 PF01471 Putative peptidoglycan binding domain SE1113 PF17820 PDZ domain SE1114 PF06855 YozE SAM-like fold SE1115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SE1116 PF01641 SelR domain SE1117 PF01625 Peptide methionine sulfoxide reductase SE1118 PF02645 Uncharacterised protein, DegV family COG1307 SE1119 PF00186 Dihydrofolate reductase SE1120 PF00303 Thymidylate synthase SE1121 PF00005 ABC transporter SE1123 PF06491 Disulphide isomerase SE1124 PF13769 Virulence factor SE1124 PF08712 Scaffold protein Nfu/NifU N terminal SE1125 PF10782 Zinc-finger SE1126 PF02592 Putative vitamin uptake transporter SE1128 PF07564 Domain of Unknown Function (DUF1542) SE1128 PF01468 GA module SE1129 PF04650 YSIRK type signal peptide SE1129 PF01468 GA module SE1129 PF07564 Domain of Unknown Function (DUF1542) SE1130 PF01367 5'-3' exonuclease, C-terminal SAM fold SE1130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SE1131 PF00350 Dynamin family SE1133 PF01170 Putative RNA methylase family UPF0020 SE1133 PF02926 THUMP domain SE1134 PF05103 DivIVA protein SE1135 PF06908 YspA SLOG family SE1137 PF03838 Recombination protein U SE1138 PF00905 Penicillin binding protein transpeptidase domain SE1138 PF00912 Transglycosylase SE1140 PF10576 Iron-sulfur binding domain of endonuclease III SE1140 PF00633 Helix-hairpin-helix motif SE1140 PF00730 HhH-GPD superfamily base excision DNA repair protein SE1141 PF07261 Replication initiation and membrane attachment SE1142 PF01336 OB-fold nucleic acid binding domain SE1142 PF00152 tRNA synthetases class II (D, K and N) SE1143 PF13307 Helicase C-terminal domain SE1143 PF04851 Type III restriction enzyme, res subunit SE1143 PF00929 Exonuclease SE1144 PF08279 HTH domain SE1144 PF03099 Biotin/lipoate A/B protein ligase family SE1144 PF02237 Biotin protein ligase C terminal domain SE1145 PF13735 tRNA nucleotidyltransferase domain 2 putative SE1145 PF01743 Poly A polymerase head domain SE1145 PF12627 Probable RNA and SrmB- binding site of polymerase A SE1146 PF00534 Glycosyl transferases group 1 SE1146 PF13439 Glycosyltransferase Family 4 SE1147 PF03819 MazG nucleotide pyrophosphohydrolase domain SE1148 PF04298 Putative neutral zinc metallopeptidase SE1150 PF07187 Protein of unknown function (DUF1405) SE1151 PF08858 IDEAL domain SE1151 PF08864 UPF0302 domain SE1153 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SE1154 PF01761 3-dehydroquinate synthase SE1155 PF01264 Chorismate synthase SE1156 PF00334 Nucleoside diphosphate kinase SE1157 PF00348 Polyprenyl synthetase SE1158 PF01209 ubiE/COQ5 methyltransferase family SE1160 PF00216 Bacterial DNA-binding protein SE1161 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SE1161 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SE1162 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SE1162 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SE1163 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SE1163 PF01926 50S ribosome-binding GTPase SE1164 PF00575 S1 RNA binding domain SE1165 PF00575 S1 RNA binding domain SE1166 PF02224 Cytidylate kinase SE1167 PF00710 Asparaginase, N-terminal SE1167 PF17763 Glutaminase/Asparaginase C-terminal domain SE1169 PF01476 LysM domain SE1170 PF00270 DEAD/DEAH box helicase SE1170 PF00271 Helicase conserved C-terminal domain SE1174 PF12822 ECF transporter, substrate-specific component SE1175 PF18698 Histidine kinase sensor domain SE1175 PF00512 His Kinase A (phospho-acceptor) domain SE1175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1175 PF00672 HAMP domain SE1176 PF00072 Response regulator receiver domain SE1176 PF00486 Transcriptional regulatory protein, C terminal SE1177 PF00849 RNA pseudouridylate synthase SE1177 PF01479 S4 domain SE1178 PF04079 Segregation and condensation complex subunit ScpB SE1179 PF02616 Segregation and condensation protein ScpA SE1180 PF03745 Domain of unknown function (DUF309) SE1181 PF02899 Phage integrase, N-terminal SAM-like domain SE1181 PF00589 Phage integrase family SE1182 PF01475 Ferric uptake regulator family SE1183 PF00293 NUDIX domain SE1184 PF00248 Aldo/keto reductase family SE1185 PF00106 short chain dehydrogenase SE1186 PF14748 Pyrroline-5-carboxylate reductase dimerisation SE1186 PF03807 NADP oxidoreductase coenzyme F420-dependent SE1187 PF12706 Beta-lactamase superfamily domain SE1188 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SE1188 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SE1191 PF00128 Alpha amylase, catalytic domain SE1191 PF16657 Maltogenic Amylase, C-terminal domain SE1192 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SE1192 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SE1193 PF07687 Peptidase dimerisation domain SE1193 PF01546 Peptidase family M20/M25/M40 SE1194 PF11728 Putative aromatic acid exporter C-terminal domain SE1194 PF06081 Aromatic acid exporter family member 1 SE1195 PF06491 Disulphide isomerase SE1196 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SE1196 PF02817 e3 binding domain SE1196 PF00364 Biotin-requiring enzyme SE1197 PF02780 Transketolase, C-terminal domain SE1197 PF02779 Transketolase, pyrimidine binding domain SE1198 PF00676 Dehydrogenase E1 component SE1199 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE1199 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE1200 PF13476 AAA domain SE1201 PF01316 Arginine repressor, DNA binding domain SE1201 PF02863 Arginine repressor, C-terminal domain SE1202 PF00348 Polyprenyl synthetase SE1203 PF02609 Exonuclease VII small subunit SE1204 PF02601 Exonuclease VII, large subunit SE1204 PF13742 OB-fold nucleic acid binding domain SE1205 PF01029 NusB family SE1206 PF03780 Asp23 family, cell envelope-related function SE1207 PF00289 Biotin carboxylase, N-terminal domain SE1207 PF02785 Biotin carboxylase C-terminal domain SE1207 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SE1208 PF00364 Biotin-requiring enzyme SE1209 PF00202 Aminotransferase class-III SE1210 PF00696 Amino acid kinase family SE1211 PF01960 ArgJ family SE1212 PF01118 Semialdehyde dehydrogenase, NAD binding domain SE1212 PF02774 Semialdehyde dehydrogenase, dimerisation domain SE1213 PF01132 Elongation factor P (EF-P) OB domain SE1213 PF09285 Elongation factor P, C-terminal SE1213 PF08207 Elongation factor P (EF-P) KOW-like domain SE1214 PF01321 Creatinase/Prolidase N-terminal domain SE1214 PF00557 Metallopeptidase family M24 SE1217 PF03099 Biotin/lipoate A/B protein ligase family SE1218 PF00581 Rhodanese-like domain SE1220 PF02347 Glycine cleavage system P-protein SE1221 PF02347 Glycine cleavage system P-protein SE1222 PF01571 Aminomethyltransferase folate-binding domain SE1222 PF08669 Glycine cleavage T-protein C-terminal barrel domain SE1224 PF01202 Shikimate kinase SE1228 PF07963 Prokaryotic N-terminal methylation motif SE1229 PF00482 Type II secretion system (T2SS), protein F SE1230 PF00437 Type II/IV secretion system protein SE1231 PF00753 Metallo-beta-lactamase superfamily SE1232 PF01910 Thiamine-binding protein SE1233 PF00480 ROK family SE1234 PF06014 Bacterial protein of unknown function (DUF910) SE1235 PF01694 Rhomboid family SE1236 PF01812 5-formyltetrahydrofolate cyclo-ligase family SE1237 PF00471 Ribosomal protein L33 SE1238 PF00905 Penicillin binding protein transpeptidase domain SE1238 PF03717 Penicillin-binding Protein dimerisation domain SE1240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SE1240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SE1241 PF01475 Ferric uptake regulator family SE1242 PF00950 ABC 3 transport family SE1243 PF00005 ABC transporter SE1244 PF01261 Xylose isomerase-like TIM barrel SE1245 PF00270 DEAD/DEAH box helicase SE1245 PF00271 Helicase conserved C-terminal domain SE1246 PF01784 NIF3 (NGG1p interacting factor 3) SE1247 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SE1248 PF03979 Sigma-70 factor, region 1.1 SE1248 PF04545 Sigma-70, region 4 SE1248 PF04539 Sigma-70 region 3 SE1248 PF04542 Sigma-70 region 2 SE1248 PF00140 Sigma-70 factor, region 1.2 SE1249 PF00772 DnaB-like helicase N terminal domain SE1249 PF13662 Toprim domain SE1249 PF01807 CHC2 zinc finger SE1249 PF08275 DNA primase catalytic core, N-terminal domain SE1250 PF03618 Kinase/pyrophosphorylase SE1251 PF00571 CBS domain SE1251 PF08279 HTH domain SE1252 PF03129 Anticodon binding domain SE1252 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SE1253 PF11967 Recombination protein O N terminal SE1253 PF02565 Recombination protein O C terminal SE1254 PF07650 KH domain SE1254 PF01926 50S ribosome-binding GTPase SE1255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SE1256 PF01219 Prokaryotic diacylglycerol kinase SE1257 PF02130 Uncharacterized protein family UPF0054 SE1258 PF02562 PhoH-like protein SE1260 PF12127 SigmaW regulon antibacterial SE1261 PF01972 Serine dehydrogenase proteinase SE1261 PF01957 NfeD-like C-terminal, partner-binding SE1262 PF01165 Ribosomal protein S21 SE1263 PF00919 Uncharacterized protein family UPF0004 SE1263 PF04055 Radical SAM superfamily SE1263 PF01938 TRAM domain SE1264 PF04452 RNA methyltransferase SE1266 PF00226 DnaJ domain SE1266 PF01556 DnaJ C terminal domain SE1266 PF00684 DnaJ central domain SE1267 PF00012 Hsp70 protein SE1268 PF01025 GrpE SE1269 PF01628 HrcA protein C terminal domain SE1270 PF06969 HemN C-terminal domain SE1270 PF04055 Radical SAM superfamily SE1271 PF00679 Elongation factor G C-terminus SE1271 PF06421 GTP-binding protein LepA C-terminus SE1271 PF03144 Elongation factor Tu domain 2 SE1271 PF00009 Elongation factor Tu GTP binding domain SE1271 PF14492 Elongation Factor G, domain II SE1272 PF01649 Ribosomal protein S20 SE1273 PF06144 DNA polymerase III, delta subunit SE1274 PF00753 Metallo-beta-lactamase superfamily SE1274 PF03772 Competence protein SE1274 PF13567 Domain of unknown function (DUF4131) SE1275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SE1277 PF13649 Methyltransferase domain SE1279 PF01966 HD domain SE1280 PF01467 Cytidylyltransferase-like SE1281 PF01985 CRS1 / YhbY (CRM) domain SE1282 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SE1282 PF01488 Shikimate / quinate 5-dehydrogenase SE1282 PF08501 Shikimate dehydrogenase substrate binding domain SE1283 PF01926 50S ribosome-binding GTPase SE1285 PF01048 Phosphorylase superfamily SE1286 PF01566 Natural resistance-associated macrophage protein SE1287 PF03746 LamB/YcsF family SE1288 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SE1288 PF00289 Biotin carboxylase, N-terminal domain SE1288 PF02785 Biotin carboxylase C-terminal domain SE1289 PF00364 Biotin-requiring enzyme SE1290 PF02626 Carboxyltransferase domain, subdomain A and B SE1291 PF02682 Carboxyltransferase domain, subdomain C and D SE1292 PF01797 Transposase IS200 like SE1293 PF01272 Transcription elongation factor, GreA/GreB, C-term SE1293 PF03449 Transcription elongation factor, N-terminal SE1294 PF00485 Phosphoribulokinase / Uridine kinase family SE1295 PF01136 Peptidase family U32 SE1295 PF16325 Peptidase family U32 C-terminal domain SE1296 PF01136 Peptidase family U32 SE1298 PF06949 Protein of unknown function (DUF1292) SE1299 PF03652 Holliday junction resolvase SE1300 PF06135 IreB regulatory phosphoprotein SE1301 PF02272 DHHA1 domain SE1301 PF01411 tRNA synthetases class II (A) SE1301 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SE1302 PF13538 UvrD-like helicase C-terminal domain SE1302 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SE1302 PF14490 Helix-hairpin-helix containing domain SE1305 PF00266 Aminotransferase class-V SE1306 PF00296 Luciferase-like monooxygenase SE1308 PF02082 Transcriptional regulator SE1309 PF16193 AAA C-terminal domain SE1309 PF12002 MgsA AAA+ ATPase C terminal SE1309 PF05496 Holliday junction DNA helicase RuvB P-loop domain SE1310 PF00899 ThiF family SE1311 PF02938 GAD domain SE1311 PF00152 tRNA synthetases class II (D, K and N) SE1311 PF01336 OB-fold nucleic acid binding domain SE1312 PF03129 Anticodon binding domain SE1312 PF13393 Histidyl-tRNA synthetase SE1313 PF01520 N-acetylmuramoyl-L-alanine amidase SE1313 PF08239 Bacterial SH3 domain SE1314 PF02580 D-Tyr-tRNA(Tyr) deacylase SE1315 PF13291 ACT domain SE1315 PF04607 Region found in RelA / SpoT proteins SE1315 PF02824 TGS domain SE1317 PF00156 Phosphoribosyl transferase domain SE1318 PF01368 DHH family SE1318 PF02272 DHHA1 domain SE1318 PF17768 RecJ OB domain SE1318 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SE1320 PF07549 SecD/SecF GG Motif SE1320 PF02355 Protein export membrane protein SE1321 PF02699 Preprotein translocase subunit SE1322 PF01702 Queuine tRNA-ribosyltransferase SE1323 PF02547 Queuosine biosynthesis protein SE1324 PF17864 RuvB AAA lid domain SE1324 PF05491 RuvB C-terminal winged helix domain SE1324 PF05496 Holliday junction DNA helicase RuvB P-loop domain SE1325 PF01330 RuvA N terminal domain SE1325 PF07499 RuvA, C-terminal domain SE1327 PF01926 50S ribosome-binding GTPase SE1327 PF01018 GTP1/OBG SE1327 PF09269 Domain of unknown function (DUF1967) SE1328 PF01016 Ribosomal L27 protein SE1329 PF04327 Cysteine protease Prp SE1330 PF00829 Ribosomal prokaryotic L21 protein SE1332 PF04085 rod shape-determining protein MreC SE1336 PF04002 RadC-like JAB domain SE1338 PF02875 Mur ligase family, glutamate ligase domain SE1338 PF08245 Mur ligase middle domain SE1339 PF08264 Anticodon-binding domain of tRNA SE1339 PF00133 tRNA synthetases class I (I, L, M and V) SE1339 PF10458 Valyl tRNA synthetase tRNA binding arm SE1340 PF03352 Methyladenine glycosylase SE1342 PF00202 Aminotransferase class-III SE1343 PF00490 Delta-aminolevulinic acid dehydratase SE1344 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SE1344 PF02602 Uroporphyrinogen-III synthase HemD SE1345 PF03900 Porphobilinogen deaminase, C-terminal domain SE1345 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SE1347 PF01488 Shikimate / quinate 5-dehydrogenase SE1347 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SE1347 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SE1348 PF01926 50S ribosome-binding GTPase SE1349 PF07724 AAA domain (Cdc48 subfamily) SE1349 PF10431 C-terminal, D2-small domain, of ClpB protein SE1349 PF06689 ClpX C4-type zinc finger SE1350 PF05697 Bacterial trigger factor protein (TF) SE1350 PF05698 Bacterial trigger factor protein (TF) C-terminus SE1350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SE1353 PF00453 Ribosomal protein L20 SE1354 PF01632 Ribosomal protein L35 SE1355 PF05198 Translation initiation factor IF-3, N-terminal domain SE1355 PF00707 Translation initiation factor IF-3, C-terminal domain SE1356 PF00324 Amino acid permease SE1357 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SE1357 PF02824 TGS domain SE1357 PF03129 Anticodon binding domain SE1357 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SE1358 PF07319 Primosomal protein DnaI N-terminus SE1358 PF01695 IstB-like ATP binding protein SE1359 PF07261 Replication initiation and membrane attachment SE1360 PF03477 ATP cone domain SE1361 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SE1361 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SE1365 PF01121 Dephospho-CoA kinase SE1366 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SE1366 PF06827 Zinc finger found in FPG and IleRS SE1366 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SE1367 PF00476 DNA polymerase family A SE1367 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SE1367 PF01367 5'-3' exonuclease, C-terminal SAM fold SE1368 PF00989 PAS fold SE1368 PF00512 His Kinase A (phospho-acceptor) domain SE1368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1368 PF16736 Single Cache-like SE1369 PF00072 Response regulator receiver domain SE1369 PF00486 Transcriptional regulatory protein, C terminal SE1370 PF00180 Isocitrate/isopropylmalate dehydrogenase SE1371 PF00285 Citrate synthase, C-terminal domain SE1372 PF00324 Amino acid permease SE1373 PF02887 Pyruvate kinase, alpha/beta domain SE1373 PF00224 Pyruvate kinase, barrel domain SE1373 PF00391 PEP-utilising enzyme, mobile domain SE1374 PF00365 Phosphofructokinase SE1375 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SE1376 PF01039 Carboxyl transferase domain SE1376 PF17848 Acetyl-coA carboxylase zinc finger domain SE1377 PF00390 Malic enzyme, N-terminal domain SE1377 PF03949 Malic enzyme, NAD binding domain SE1378 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SE1378 PF07733 Bacterial DNA polymerase III alpha NTPase domain SE1378 PF14579 Helix-hairpin-helix motif SE1378 PF01336 OB-fold nucleic acid binding domain SE1378 PF02811 PHP domain SE1379 PF01368 DHH family SE1379 PF02272 DHHA1 domain SE1380 PF03061 Thioesterase superfamily SE1380 PF00571 CBS domain SE1380 PF00392 Bacterial regulatory proteins, gntR family SE1380 PF07085 DRTGG domain SE1383 PF01321 Creatinase/Prolidase N-terminal domain SE1383 PF00557 Metallopeptidase family M24 SE1384 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SE1384 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SE1385 PF00582 Universal stress protein family SE1387 PF00871 Acetokinase family SE1388 PF02384 N-6 DNA Methylase SE1389 PF08534 Redoxin SE1390 PF01925 Sulfite exporter TauE/SafE SE1391 PF02568 Thiamine biosynthesis protein (ThiI) SE1391 PF02926 THUMP domain SE1392 PF00266 Aminotransferase class-V SE1393 PF06160 Septation ring formation regulator, EzrA SE1394 PF13185 GAF domain SE1396 PF00163 Ribosomal protein S4/S9 N-terminal domain SE1396 PF01479 S4 domain SE1397 PF03009 Glycerophosphoryl diester phosphodiesterase family SE1398 PF02566 OsmC-like protein SE1400 PF00266 Aminotransferase class-V SE1401 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE1401 PF01842 ACT domain SE1401 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE1403 PF00367 phosphotransferase system, EIIB SE1403 PF02378 Phosphotransferase system, EIIC SE1404 PF01553 Acyltransferase SE1405 PF13180 PDZ domain SE1406 PF00579 tRNA synthetases class I (W and Y) SE1406 PF01479 S4 domain SE1407 PF00905 Penicillin binding protein transpeptidase domain SE1407 PF00912 Transglycosylase SE1408 PF01268 Formate--tetrahydrofolate ligase SE1409 PF00356 Bacterial regulatory proteins, lacI family SE1410 PF01817 Chorismate mutase type II SE1410 PF00793 DAHP synthetase I family SE1412 PF06103 Bacterial protein of unknown function (DUF948) SE1413 PF01225 Mur ligase family, catalytic domain SE1413 PF08245 Mur ligase middle domain SE1413 PF02875 Mur ligase family, glutamate ligase domain SE1414 PF17854 FtsK alpha domain SE1414 PF09397 Ftsk gamma domain SE1414 PF01580 FtsK/SpoIIIE family SE1415 PF14794 Domain of unknown function (DUF4479) SE1415 PF01588 Putative tRNA binding domain SE1416 PF07285 Protein of unknown function (DUF1444) SE1417 PF00085 Thioredoxin SE1418 PF05343 M42 glutamyl aminopeptidase SE1421 PF02390 Putative methyltransferase SE1422 PF01636 Phosphotransferase enzyme family SE1423 PF01063 Amino-transferase class IV SE1424 PF01546 Peptidase family M20/M25/M40 SE1426 PF00849 RNA pseudouridylate synthase SE1426 PF01479 S4 domain SE1427 PF01943 Polysaccharide biosynthesis protein SE1427 PF14667 Polysaccharide biosynthesis C-terminal domain SE1429 PF07564 Domain of Unknown Function (DUF1542) SE1429 PF01468 GA module SE1429 PF07564 Domain of Unknown Function (DUF1542) SE1429 PF04650 YSIRK type signal peptide SE1429 PF04650 YSIRK type signal peptide SE1429 PF01468 GA module SE1431 PF09334 tRNA synthetases class I (M) SE1431 PF13603 Leucyl-tRNA synthetase, Domain 2 SE1431 PF00133 tRNA synthetases class I (I, L, M and V) SE1431 PF08264 Anticodon-binding domain of tRNA SE1432 PF07690 Major Facilitator Superfamily SE1433 PF04055 Radical SAM superfamily SE1433 PF16199 Radical_SAM C-terminal domain SE1434 PF06962 Putative rRNA methylase SE1435 PF01047 MarR family SE1436 PF12146 Serine aminopeptidase, S33 SE1437 PF01619 Proline dehydrogenase SE1438 PF00885 6,7-dimethyl-8-ribityllumazine synthase SE1439 PF00925 GTP cyclohydrolase II SE1439 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SE1440 PF00677 Lumazine binding domain SE1441 PF01872 RibD C-terminal domain SE1441 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SE1443 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SE1443 PF13457 GW (Gly-Tryp) dipeptide domain SE1446 PF04542 Sigma-70 region 2 SE1446 PF00196 Bacterial regulatory proteins, luxR family SE1449 PF00923 Transaldolase/Fructose-6-phosphate aldolase SE1451 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SE1452 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SE1456 PF00248 Aldo/keto reductase family SE1458 PF00438 S-adenosylmethionine synthetase, N-terminal domain SE1458 PF02772 S-adenosylmethionine synthetase, central domain SE1458 PF02773 S-adenosylmethionine synthetase, C-terminal domain SE1459 PF01293 Phosphoenolpyruvate carboxykinase SE1460 PF00326 Prolyl oligopeptidase family SE1461 PF00293 NUDIX domain SE1462 PF01809 Putative membrane protein insertion efficiency factor SE1464 PF13193 AMP-binding enzyme C-terminal domain SE1464 PF00501 AMP-binding enzyme SE1471 PF01520 N-acetylmuramoyl-L-alanine amidase SE1471 PF05257 CHAP domain SE1471 PF08460 Bacterial SH3 domain SE1478 PF18840 Large polyvalent protein associated domain 25 SE1480 PF04203 Sortase domain SE1482 PF01131 DNA topoisomerase SE1482 PF01751 Toprim domain SE1489 PF05257 CHAP domain SE1489 PF01476 LysM domain SE1495 PF12696 TraM recognition site of TraD and TraG SE1511 PF01593 Flavin containing amine oxidoreductase SE1512 PF00762 Ferrochelatase SE1513 PF01208 Uroporphyrinogen decarboxylase (URO-D) SE1516 PF05975 Bacterial ABC transporter protein EcsB SE1517 PF00005 ABC transporter SE1518 PF01230 HIT domain SE1521 PF00639 PPIC-type PPIASE domain SE1523 PF01966 HD domain SE1525 PF00149 Calcineurin-like phosphoesterase SE1526 PF06133 Control of competence regulator ComK, YlbF/YmcA SE1527 PF04286 Protein of unknown function (DUF445) SE1529 PF00072 Response regulator receiver domain SE1529 PF00196 Bacterial regulatory proteins, luxR family SE1530 PF13185 GAF domain SE1530 PF07730 Histidine kinase SE1531 PF00849 RNA pseudouridylate synthase SE1531 PF01479 S4 domain SE1532 PF00206 Lyase SE1532 PF10415 Fumarase C C-terminus SE1537 PF00588 SpoU rRNA Methylase family SE1538 PF08331 Domain of unknown function (DUF1730) SE1540 PF00005 ABC transporter SE1541 PF00528 Binding-protein-dependent transport system inner membrane component SE1545 PF01475 Ferric uptake regulator family SE1546 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE1546 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE1547 PF00578 AhpC/TSA family SE1548 PF00202 Aminotransferase class-III SE1549 PF06081 Aromatic acid exporter family member 1 SE1550 PF00005 ABC transporter SE1550 PF00664 ABC transporter transmembrane region SE1551 PF04167 Protein of unknown function (DUF402) SE1552 PF14815 NUDIX domain SE1552 PF00633 Helix-hairpin-helix motif SE1552 PF00730 HhH-GPD superfamily base excision DNA repair protein SE1553 PF04307 LexA-binding, inner membrane-associated putative hydrolase SE1555 PF00005 ABC transporter SE1555 PF01476 LysM domain SE1558 PF02631 RecX family SE1559 PF00912 Transglycosylase SE1560 PF01965 DJ-1/PfpI family SE1562 PF08756 YfkB-like domain SE1562 PF04055 Radical SAM superfamily SE1563 PF03061 Thioesterase superfamily SE1564 PF02073 Thermophilic metalloprotease (M29) SE1565 PF06569 Protein of unknown function (DUF1128) SE1566 PF01451 Low molecular weight phosphotyrosine protein phosphatase SE1568 PF03631 Virulence factor BrkB SE1569 PF00196 Bacterial regulatory proteins, luxR family SE1569 PF00072 Response regulator receiver domain SE1570 PF07730 Histidine kinase SE1570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1573 PF00557 Metallopeptidase family M24 SE1574 PF06081 Aromatic acid exporter family member 1 SE1576 PF07685 CobB/CobQ-like glutamine amidotransferase domain SE1577 PF08353 Domain of unknown function (DUF1727) SE1577 PF08245 Mur ligase middle domain SE1578 PF00210 Ferritin-like domain SE1580 PF11799 impB/mucB/samB family C-terminal domain SE1580 PF00817 impB/mucB/samB family SE1582 PF05958 tRNA (Uracil-5-)-methyltransferase SE1583 PF00781 Diacylglycerol kinase catalytic domain SE1584 PF02934 GatB/GatE catalytic domain SE1584 PF02637 GatB domain SE1585 PF01425 Amidase SE1586 PF02686 Glu-tRNAGln amidotransferase C subunit SE1587 PF00474 Sodium:solute symporter family SE1588 PF07537 CamS sex pheromone cAM373 precursor SE1589 PF01653 NAD-dependent DNA ligase adenylation domain SE1589 PF03120 NAD-dependent DNA ligase OB-fold domain SE1589 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SE1589 PF00533 BRCA1 C Terminus (BRCT) domain SE1589 PF12826 Helix-hairpin-helix motif SE1590 PF13361 UvrD-like helicase C-terminal domain SE1590 PF00580 UvrD/REP helicase N-terminal domain SE1591 PF01884 PcrB family SE1592 PF01371 Trp repressor protein SE1593 PF10397 Adenylosuccinate lyase C-terminus SE1593 PF00206 Lyase SE1594 PF14044 NETI protein SE1595 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SE1596 PF02540 NAD synthase SE1597 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SE1597 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SE1597 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SE1598 PF02898 Nitric oxide synthase, oxygenase domain SE1599 PF01842 ACT domain SE1599 PF00800 Prephenate dehydratase SE1601 PF00857 Isochorismatase family SE1602 PF02833 DHHA2 domain SE1602 PF01368 DHH family SE1603 PF00171 Aldehyde dehydrogenase family SE1604 PF10282 Lactonase, 7-bladed beta-propeller SE1606 PF03965 Penicillinase repressor SE1607 PF05569 BlaR1 peptidase M56 SE1607 PF00905 Penicillin binding protein transpeptidase domain SE1608 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SE1609 PF08863 YolD-like protein SE1612 PF02899 Phage integrase, N-terminal SAM-like domain SE1612 PF00589 Phage integrase family SE1613 PF00589 Phage integrase family SE1613 PF02899 Phage integrase, N-terminal SAM-like domain SE1622 PF00005 ABC transporter SE1624 PF00005 ABC transporter SE1625 PF00392 Bacterial regulatory proteins, gntR family SE1629 PF00118 TCP-1/cpn60 chaperonin family SE1630 PF00166 Chaperonin 10 Kd subunit SE1631 PF02517 CPBP intramembrane metalloprotease SE1633 PF00795 Carbon-nitrogen hydrolase SE1634 PF05372 Delta lysin family SE1635 PF04647 Accessory gene regulator B SE1637 PF17203 Single cache domain 3 SE1637 PF00989 PAS fold SE1637 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SE1637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1638 PF00072 Response regulator receiver domain SE1638 PF04397 LytTr DNA-binding domain SE1639 PF00294 pfkB family carbohydrate kinase SE1640 PF00251 Glycosyl hydrolases family 32 N-terminal domain SE1640 PF08244 Glycosyl hydrolases family 32 C terminal SE1643 PF00356 Bacterial regulatory proteins, lacI family SE1643 PF13407 Periplasmic binding protein domain SE1644 PF00909 Ammonium Transporter Family SE1645 PF01206 Sulfurtransferase TusA SE1646 PF04143 Sulphur transport SE1647 PF06971 Putative DNA-binding protein N-terminus SE1647 PF02629 CoA binding domain SE1648 PF16326 ABC transporter C-terminal domain SE1648 PF12848 ABC transporter SE1648 PF00005 ABC transporter SE1649 PF00488 MutS domain V SE1649 PF05190 MutS family domain IV SE1649 PF05192 MutS domain III SE1649 PF05188 MutS domain II SE1649 PF01624 MutS domain I SE1650 PF00814 Glycoprotease family SE1651 PF00583 Acetyltransferase (GNAT) family SE1652 PF00814 Glycoprotease family SE1653 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SE1654 PF00920 Dehydratase family SE1655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE1655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SE1655 PF00205 Thiamine pyrophosphate enzyme, central domain SE1657 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SE1657 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SE1658 PF00682 HMGL-like SE1658 PF08502 LeuA allosteric (dimerisation) domain SE1659 PF00180 Isocitrate/isopropylmalate dehydrogenase SE1660 PF00330 Aconitase family (aconitate hydratase) SE1661 PF00694 Aconitase C-terminal domain SE1662 PF00585 C-terminal regulatory domain of Threonine dehydratase SE1662 PF00291 Pyridoxal-phosphate dependent enzyme SE1666 PF10263 SprT-like family SE1667 PF09371 Tex-like protein N-terminal domain SE1667 PF17674 HHH domain SE1667 PF00575 S1 RNA binding domain SE1667 PF16921 Tex protein YqgF-like domain SE1668 PF04545 Sigma-70, region 4 SE1668 PF04539 Sigma-70 region 3 SE1668 PF04542 Sigma-70 region 2 SE1669 PF13581 Histidine kinase-like ATPase domain SE1670 PF01740 STAS domain SE1671 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain SE1671 PF07228 Stage II sporulation protein E (SpoIIE) SE1672 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SE1674 PF01168 Alanine racemase, N-terminal domain SE1674 PF00842 Alanine racemase, C-terminal domain SE1675 PF01648 4'-phosphopantetheinyl transferase superfamily SE1676 PF03703 Bacterial PH domain SE1677 PF03703 Bacterial PH domain SE1679 PF00271 Helicase conserved C-terminal domain SE1679 PF00270 DEAD/DEAH box helicase SE1680 PF08245 Mur ligase middle domain SE1680 PF02875 Mur ligase family, glutamate ligase domain SE1680 PF01225 Mur ligase family, catalytic domain SE1681 PF07478 D-ala D-ala ligase C-terminus SE1681 PF01820 D-ala D-ala ligase N-terminus SE1682 PF01098 Cell cycle protein SE1686 PF02583 Metal-sensitive transcriptional repressor SE1687 PF13396 Phospholipase_D-nuclease N-terminal SE1687 PF13091 PLD-like domain SE1688 PF01966 HD domain SE1689 PF02096 60Kd inner membrane protein SE1690 PF02581 Thiamine monophosphate synthase SE1691 PF02110 Hydroxyethylthiazole kinase family SE1692 PF08543 Phosphomethylpyrimidine kinase SE1693 PF03070 TENA/THI-4/PQQC family SE1694 PF06737 Transglycosylase-like domain SE1695 PF00436 Single-strand binding protein family SE1697 PF07977 FabA-like domain SE1698 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SE1699 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SE1699 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SE1700 PF02874 ATP synthase alpha/beta family, beta-barrel domain SE1700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SE1701 PF00231 ATP synthase SE1702 PF02874 ATP synthase alpha/beta family, beta-barrel domain SE1702 PF00306 ATP synthase alpha/beta chain, C terminal domain SE1702 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SE1703 PF00213 ATP synthase delta (OSCP) subunit SE1704 PF00430 ATP synthase B/B' CF(0) SE1705 PF00137 ATP synthase subunit C SE1706 PF00119 ATP synthase A chain SE1708 PF02350 UDP-N-acetylglucosamine 2-epimerase SE1710 PF00464 Serine hydroxymethyltransferase SE1711 PF04260 Protein of unknown function (DUF436) SE1712 PF01451 Low molecular weight phosphotyrosine protein phosphatase SE1713 PF01300 Telomere recombination SE1713 PF03481 Putative GTP-binding controlling metal-binding SE1715 PF05175 Methyltransferase small domain SE1715 PF17827 PrmC N-terminal domain SE1716 PF03462 PCRF domain SE1716 PF00472 RF-1 domain SE1717 PF00265 Thymidine kinase SE1718 PF01197 Ribosomal protein L31 SE1719 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SE1719 PF07497 Rho termination factor, RNA-binding domain SE1719 PF07498 Rho termination factor, N-terminal domain SE1720 PF00171 Aldehyde dehydrogenase family SE1722 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SE1723 PF01116 Fructose-bisphosphate aldolase class-II SE1725 PF06418 CTP synthase N-terminus SE1725 PF00117 Glutamine amidotransferase class-I SE1726 PF05066 HB1, ASXL, restriction endonuclease HTH domain SE1728 PF03630 Fumble SE1732 PF02664 S-Ribosylhomocysteinase (LuxS) SE1734 PF01676 Metalloenzyme superfamily SE1735 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SE1735 PF00591 Glycosyl transferase family, a/b domain SE1735 PF02885 Glycosyl transferase family, helical bundle domain SE1736 PF01791 DeoC/LacD family aldolase SE1737 PF01048 Phosphorylase superfamily SE1738 PF00210 Ferritin-like domain SE1743 PF01238 Phosphomannose isomerase type I SE1745 PF13460 NAD(P)H-binding SE1746 PF01022 Bacterial regulatory protein, arsR family SE1747 PF16916 Dimerisation domain of Zinc Transporter SE1747 PF01545 Cation efflux family SE1751 PF01380 SIS domain SE1752 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SE1752 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SE1752 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SE1752 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SE1754 PF02457 DisA bacterial checkpoint controller nucleotide-binding SE1756 PF10609 NUBPL iron-transfer P-loop NTPase SE1757 PF07690 Major Facilitator Superfamily SE1758 PF17080 Multidrug Resistance efflux pump SE1759 PF07690 Major Facilitator Superfamily SE1761 PF01704 UTP--glucose-1-phosphate uridylyltransferase SE1762 PF04307 LexA-binding, inner membrane-associated putative hydrolase SE1764 PF03992 Antibiotic biosynthesis monooxygenase SE1765 PF07670 Nucleoside recognition SE1766 PF01032 FecCD transport family SE1767 PF01032 FecCD transport family SE1768 PF01497 Periplasmic binding protein SE1769 PF01168 Alanine racemase, N-terminal domain SE1770 PF04183 IucA / IucC family SE1770 PF06276 Ferric iron reductase FhuF-like transporter SE1771 PF05977 Transmembrane secretion effector SE1772 PF04183 IucA / IucC family SE1772 PF06276 Ferric iron reductase FhuF-like transporter SE1774 PF03780 Asp23 family, cell envelope-related function SE1777 PF00107 Zinc-binding dehydrogenase SE1777 PF08240 Alcohol dehydrogenase GroES-like domain SE1778 PF16884 N-terminal domain of oxidoreductase SE1778 PF00107 Zinc-binding dehydrogenase SE1779 PF00296 Luciferase-like monooxygenase SE1781 PF00232 Glycosyl hydrolase family 1 SE1782 PF02378 Phosphotransferase system, EIIC SE1782 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SE1783 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SE1784 PF01791 DeoC/LacD family aldolase SE1785 PF00294 pfkB family carbohydrate kinase SE1786 PF02502 Ribose/Galactose Isomerase SE1787 PF02502 Ribose/Galactose Isomerase SE1788 PF08220 DeoR-like helix-turn-helix domain SE1788 PF00455 DeoR C terminal sensor domain SE1789 PF02146 Sir2 family SE1790 PF00380 Ribosomal protein S9/S16 SE1791 PF00572 Ribosomal protein L13 SE1792 PF01416 tRNA pseudouridine synthase SE1793 PF02361 Cobalt transport protein SE1794 PF00005 ABC transporter SE1795 PF00005 ABC transporter SE1796 PF01196 Ribosomal protein L17 SE1797 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SE1797 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SE1797 PF01000 RNA polymerase Rpb3/RpoA insert domain SE1798 PF00411 Ribosomal protein S11 SE1799 PF00416 Ribosomal protein S13/S18 SE1800 PF00444 Ribosomal protein L36 SE1801 PF01176 Translation initiation factor 1A / IF-1 SE1802 PF05191 Adenylate kinase, active site lid SE1803 PF00344 SecY translocase SE1804 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SE1805 PF00327 Ribosomal protein L30p/L7e SE1806 PF03719 Ribosomal protein S5, C-terminal domain SE1806 PF00333 Ribosomal protein S5, N-terminal domain SE1807 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SE1808 PF00347 Ribosomal protein L6 SE1809 PF00410 Ribosomal protein S8 SE1810 PF00253 Ribosomal protein S14p/S29e SE1811 PF00673 ribosomal L5P family C-terminus SE1811 PF00281 Ribosomal protein L5 SE1812 PF00467 KOW motif SE1812 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SE1814 PF00238 Ribosomal protein L14p/L23e SE1815 PF00366 Ribosomal protein S17 SE1816 PF00831 Ribosomal L29 protein SE1817 PF00252 Ribosomal protein L16p/L10e SE1818 PF07650 KH domain SE1818 PF00189 Ribosomal protein S3, C-terminal domain SE1819 PF00237 Ribosomal protein L22p/L17e SE1820 PF00203 Ribosomal protein S19 SE1821 PF03947 Ribosomal Proteins L2, C-terminal domain SE1821 PF00181 Ribosomal Proteins L2, RNA binding domain SE1822 PF00276 Ribosomal protein L23 SE1823 PF00573 Ribosomal protein L4/L1 family SE1824 PF00297 Ribosomal protein L3 SE1825 PF00338 Ribosomal protein S10p/S20e SE1827 PF00860 Permease family SE1828 PF01131 DNA topoisomerase SE1828 PF01751 Toprim domain SE1829 PF06800 Sugar transport protein SE1834 PF00873 AcrB/AcrD/AcrF family SE1835 PF02388 FemAB family SE1837 PF01047 MarR family SE1840 PF01047 MarR family SE1841 PF04055 Radical SAM superfamily SE1841 PF06463 Molybdenum Cofactor Synthesis C SE1842 PF12804 MobA-like NTP transferase domain SE1843 PF02597 ThiS family SE1844 PF02391 MoaE protein SE1846 PF03454 MoeA C-terminal region (domain IV) SE1846 PF00994 Probable molybdopterin binding domain SE1846 PF03453 MoeA N-terminal region (domain I and II) SE1847 PF01967 MoaC family SE1848 PF00994 Probable molybdopterin binding domain SE1849 PF00899 ThiF family SE1850 PF03459 TOBE domain SE1850 PF00005 ABC transporter SE1851 PF00528 Binding-protein-dependent transport system inner membrane component SE1853 PF02634 FdhD/NarQ family SE1854 PF02634 FdhD/NarQ family SE1856 PF02632 BioY family SE1857 PF01156 Inosine-uridine preferring nucleoside hydrolase SE1858 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SE1858 PF08028 Acyl-CoA dehydrogenase, C-terminal domain SE1858 PF02770 Acyl-CoA dehydrogenase, middle domain SE1861 PF00547 Urease, gamma subunit SE1862 PF00699 Urease beta subunit SE1863 PF01979 Amidohydrolase family SE1863 PF00449 Urease alpha-subunit, N-terminal domain SE1864 PF02814 UreE urease accessory protein, N-terminal domain SE1864 PF05194 UreE urease accessory protein, C-terminal domain SE1865 PF01730 UreF SE1866 PF02492 CobW/HypB/UreG, nucleotide-binding domain SE1867 PF01774 UreD urease accessory protein SE1872 PF05257 CHAP domain SE1873 PF03553 Na+/H+ antiporter family SE1874 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain SE1874 PF02558 Ketopantoate reductase PanE/ApbA SE1876 PF05257 CHAP domain SE1877 PF00893 Small Multidrug Resistance protein SE1878 PF00893 Small Multidrug Resistance protein SE1879 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE1879 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE1880 PF01494 FAD binding domain SE1881 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SE1881 PF13457 GW (Gly-Tryp) dipeptide domain SE1883 PF03816 Cell envelope-related transcriptional attenuator domain SE1884 PF00459 Inositol monophosphatase family SE1885 PF08279 HTH domain SE1885 PF13280 WYL domain SE1886 PF02517 CPBP intramembrane metalloprotease SE1889 PF01380 SIS domain SE1890 PF00367 phosphotransferase system, EIIB SE1890 PF02378 Phosphotransferase system, EIIC SE1892 PF00324 Amino acid permease SE1895 PF13419 Haloacid dehalogenase-like hydrolase SE1897 PF00367 phosphotransferase system, EIIB SE1897 PF02378 Phosphotransferase system, EIIC SE1898 PF01418 Helix-turn-helix domain, rpiR family SE1898 PF01380 SIS domain SE1904 PF01613 Flavin reductase like domain SE1906 PF01546 Peptidase family M20/M25/M40 SE1906 PF07687 Peptidase dimerisation domain SE1907 PF00491 Arginase family SE1908 PF02517 CPBP intramembrane metalloprotease SE1911 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SE1912 PF03473 MOSC domain SE1913 PF01263 Aldose 1-epimerase SE1914 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SE1914 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SE1919 PF02245 Methylpurine-DNA glycosylase (MPG) SE1924 PF03616 Sodium/glutamate symporter SE1925 PF01070 FMN-dependent dehydrogenase SE1926 PF01544 CorA-like Mg2+ transporter protein SE1929 PF00934 PE family SE1929 PF07859 alpha/beta hydrolase fold SE1932 PF07690 Major Facilitator Superfamily SE1935 PF07690 Major Facilitator Superfamily SE1936 PF13240 zinc-ribbon domain SE1937 PF12802 MarR family SE1939 PF00005 ABC transporter SE1940 PF02687 FtsX-like permease family SE1941 PF00486 Transcriptional regulatory protein, C terminal SE1941 PF00072 Response regulator receiver domain SE1942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1942 PF00672 HAMP domain SE1942 PF00512 His Kinase A (phospho-acceptor) domain SE1943 PF06039 Malate:quinone oxidoreductase (Mqo) SE1944 PF00534 Glycosyl transferases group 1 SE1944 PF13439 Glycosyltransferase Family 4 SE1945 PF02652 L-lactate permease SE1946 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE1946 PF00535 Glycosyl transferase family 2 SE1948 PF00535 Glycosyl transferase family 2 SE1948 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE1949 PF00583 Acetyltransferase (GNAT) family SE1950 PF08240 Alcohol dehydrogenase GroES-like domain SE1950 PF00107 Zinc-binding dehydrogenase SE1959 PF02378 Phosphotransferase system, EIIC SE1959 PF00367 phosphotransferase system, EIIB SE1962 PF16242 Pyridoxamine 5'-phosphate oxidase like SE1964 PF00375 Sodium:dicarboxylate symporter family SE1966 PF00881 Nitroreductase family SE1967 PF01047 MarR family SE1968 PF07690 Major Facilitator Superfamily SE1969 PF00072 Response regulator receiver domain SE1969 PF00196 Bacterial regulatory proteins, luxR family SE1970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE1970 PF07730 Histidine kinase SE1972 PF02665 Nitrate reductase gamma subunit SE1974 PF14711 Respiratory nitrate reductase beta C-terminal SE1974 PF13247 4Fe-4S dicluster domain SE1975 PF01568 Molydopterin dinucleotide binding domain SE1975 PF00384 Molybdopterin oxidoreductase SE1975 PF14710 Respiratory nitrate reductase alpha N-terminal SE1976 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SE1977 PF00355 Rieske [2Fe-2S] domain SE1978 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SE1978 PF04324 BFD-like [2Fe-2S] binding domain SE1978 PF18267 Rubredoxin NAD+ reductase C-terminal domain SE1978 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SE1978 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE1981 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SE1984 PF00583 Acetyltransferase (GNAT) family SE1985 PF01226 Formate/nitrite transporter SE1989 PF02388 FemAB family SE1991 PF00005 ABC transporter SE1992 PF00528 Binding-protein-dependent transport system inner membrane component SE1993 PF00497 Bacterial extracellular solute-binding proteins, family 3 SE1995 PF00300 Histidine phosphatase superfamily (branch 1) SE1996 PF16916 Dimerisation domain of Zinc Transporter SE1996 PF01545 Cation efflux family SE1999 PF02595 Glycerate kinase family SE2001 PF07690 Major Facilitator Superfamily SE2004 PF00324 Amino acid permease SE2005 PF13520 Amino acid permease SE2007 PF00144 Beta-lactamase SE2008 PF02096 60Kd inner membrane protein SE2009 PF02558 Ketopantoate reductase PanE/ApbA SE2009 PF08546 Ketopantoate reductase PanE/ApbA C terminal SE2010 PF07690 Major Facilitator Superfamily SE2011 PF07694 5TMR of 5TMR-LYT SE2011 PF06580 Histidine kinase SE2011 PF13492 GAF domain SE2011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE2012 PF04397 LytTr DNA-binding domain SE2012 PF00072 Response regulator receiver domain SE2013 PF03788 LrgA family SE2014 PF04172 LrgB-like family SE2015 PF00528 Binding-protein-dependent transport system inner membrane component SE2016 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SE2017 PF00528 Binding-protein-dependent transport system inner membrane component SE2018 PF00005 ABC transporter SE2018 PF00571 CBS domain SE2019 PF08240 Alcohol dehydrogenase GroES-like domain SE2019 PF00107 Zinc-binding dehydrogenase SE2021 PF13520 Amino acid permease SE2022 PF00135 Carboxylesterase family SE2023 PF07690 Major Facilitator Superfamily SE2024 PF03649 Uncharacterised protein family (UPF0014) SE2025 PF00005 ABC transporter SE2028 PF01645 Conserved region in glutamate synthase SE2030 PF05343 M42 glutamyl aminopeptidase SE2033 PF02541 Ppx/GppA phosphatase family SE2034 PF13089 Polyphosphate kinase N-terminal domain SE2034 PF17941 Polyphosphate kinase C-terminal domain 1 SE2034 PF13090 Polyphosphate kinase C-terminal domain 2 SE2034 PF02503 Polyphosphate kinase middle domain SE2035 PF07687 Peptidase dimerisation domain SE2035 PF01546 Peptidase family M20/M25/M40 SE2036 PF00106 short chain dehydrogenase SE2039 PF02151 UvrB/uvrC motif SE2039 PF17757 UvrB interaction domain SE2039 PF04851 Type III restriction enzyme, res subunit SE2039 PF00271 Helicase conserved C-terminal domain SE2039 PF12344 Ultra-violet resistance protein B SE2040 PF00293 NUDIX domain SE2041 PF00534 Glycosyl transferases group 1 SE2041 PF09318 Glycosyl transferase 1 domain A SE2042 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SE2042 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SE2042 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SE2042 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SE2043 PF00483 Nucleotidyl transferase SE2044 PF02447 GntP family permease SE2045 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SE2045 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SE2046 PF00392 Bacterial regulatory proteins, gntR family SE2046 PF07729 FCD domain SE2047 PF07690 Major Facilitator Superfamily SE2048 PF13411 MerR HTH family regulatory protein SE2050 PF00561 alpha/beta hydrolase fold SE2052 PF04607 Region found in RelA / SpoT proteins SE2053 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) SE2056 PF07690 Major Facilitator Superfamily SE2058 PF01266 FAD dependent oxidoreductase SE2060 PF05690 Thiazole biosynthesis protein ThiG SE2061 PF00899 ThiF family SE2062 PF09335 SNARE associated Golgi protein SE2063 PF06874 Firmicute fructose-1,6-bisphosphatase SE2067 PF00171 Aldehyde dehydrogenase family SE2070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SE2071 PF00171 Aldehyde dehydrogenase family SE2073 PF00881 Nitroreductase family SE2074 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE2074 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE2076 PF04203 Sortase domain SE2080 PF03313 Serine dehydratase alpha chain SE2081 PF03315 Serine dehydratase beta chain SE2081 PF01842 ACT domain SE2085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SE2085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SE2086 PF00294 pfkB family carbohydrate kinase SE2087 PF05025 RbsD / FucU transport protein family SE2088 PF06800 Sugar transport protein SE2091 PF09587 Bacterial capsule synthesis protein PGA_cap SE2092 PF14102 Capsule biosynthesis CapC SE2093 PF08245 Mur ligase middle domain SE2095 PF07859 alpha/beta hydrolase fold SE2096 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SE2096 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SE2098 PF08240 Alcohol dehydrogenase GroES-like domain SE2098 PF13823 Alcohol dehydrogenase GroES-associated SE2098 PF00107 Zinc-binding dehydrogenase SE2102 PF00367 phosphotransferase system, EIIB SE2102 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SE2102 PF02378 Phosphotransferase system, EIIC SE2103 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SE2103 PF00205 Thiamine pyrophosphate enzyme, central domain SE2103 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE2104 PF04172 LrgB-like family SE2105 PF03788 LrgA family SE2106 PF03466 LysR substrate binding domain SE2106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SE2109 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SE2110 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SE2110 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SE2111 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SE2111 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SE2114 PF02421 Ferrous iron transport protein B SE2114 PF07670 Nucleoside recognition SE2114 PF17910 FeoB cytosolic helical domain SE2114 PF07664 Ferrous iron transport protein B C terminus SE2116 PF00171 Aldehyde dehydrogenase family SE2119 PF00403 Heavy-metal-associated domain SE2120 PF00403 Heavy-metal-associated domain SE2121 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SE2121 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SE2122 PF00155 Aminotransferase class I and II SE2124 PF05257 CHAP domain SE2125 PF01757 Acyltransferase family SE2126 PF06737 Transglycosylase-like domain SE2128 PF03976 Polyphosphate kinase 2 (PPK2) SE2130 PF00324 Amino acid permease SE2131 PF03881 Fructosamine kinase SE2132 PF01180 Dihydroorotate dehydrogenase SE2135 PF02677 Epoxyqueuosine reductase QueH SE2139 PF02261 Aspartate decarboxylase SE2140 PF02569 Pantoate-beta-alanine ligase SE2141 PF02548 Ketopantoate hydroxymethyltransferase SE2142 PF02558 Ketopantoate reductase PanE/ApbA SE2142 PF08546 Ketopantoate reductase PanE/ApbA C terminal SE2143 PF03306 Alpha-acetolactate decarboxylase SE2144 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE2144 PF00205 Thiamine pyrophosphate enzyme, central domain SE2144 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SE2145 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SE2145 PF00056 lactate/malate dehydrogenase, NAD binding domain SE2146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SE2146 PF03466 LysR substrate binding domain SE2147 PF13520 Amino acid permease SE2148 PF00202 Aminotransferase class-III SE2154 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE2154 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE2156 PF00274 Fructose-bisphosphate aldolase class-I SE2158 PF06039 Malate:quinone oxidoreductase (Mqo) SE2159 PF03618 Kinase/pyrophosphorylase SE2160 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SE2160 PF02896 PEP-utilising enzyme, TIM barrel domain SE2160 PF00391 PEP-utilising enzyme, mobile domain SE2161 PF13193 AMP-binding enzyme C-terminal domain SE2161 PF00501 AMP-binding enzyme SE2164 PF07687 Peptidase dimerisation domain SE2164 PF01546 Peptidase family M20/M25/M40 SE2165 PF00732 GMC oxidoreductase SE2165 PF05199 GMC oxidoreductase SE2166 PF00171 Aldehyde dehydrogenase family SE2168 PF02028 BCCT, betaine/carnitine/choline family transporter SE2170 PF03605 Anaerobic c4-dicarboxylate membrane transporter SE2172 PF03477 ATP cone domain SE2172 PF13597 Anaerobic ribonucleoside-triphosphate reductase SE2175 PF14306 PUA-like domain SE2175 PF01747 ATP-sulfurylase SE2176 PF01925 Sulfite exporter TauE/SafE SE2177 PF14824 Sirohaem biosynthesis protein central SE2178 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SE2179 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SE2179 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SE2180 PF00667 FAD binding domain SE2180 PF00175 Oxidoreductase NAD-binding domain SE2180 PF00258 Flavodoxin SE2181 PF01507 Phosphoadenosine phosphosulfate reductase family SE2183 PF00255 Glutathione peroxidase SE2184 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE2184 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SE2185 PF01047 MarR family SE2193 PF00005 ABC transporter SE2194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE2195 PF00486 Transcriptional regulatory protein, C terminal SE2195 PF00072 Response regulator receiver domain SE2197 PF00245 Alkaline phosphatase SE2198 PF11066 Protein of unknown function (DUF2867) SE2198 PF13460 NAD(P)H-binding SE2199 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SE2201 PF05908 Poly-gamma-glutamate hydrolase SE2205 PF02796 Helix-turn-helix domain of resolvase SE2205 PF00239 Resolvase, N terminal domain SE2207 PF14449 Pre-toxin TG SE2208 PF01797 Transposase IS200 like SE2210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SE2210 PF00205 Thiamine pyrophosphate enzyme, central domain SE2210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SE2212 PF09587 Bacterial capsule synthesis protein PGA_cap SE2214 PF00027 Cyclic nucleotide-binding domain SE2214 PF13545 Crp-like helix-turn-helix domain SE2215 PF13520 Amino acid permease SE2216 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SE2216 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SE2218 PF02863 Arginine repressor, C-terminal domain SE2218 PF01316 Arginine repressor, DNA binding domain SE2219 PF07504 Fungalysin/Thermolysin Propeptide Motif SE2219 PF03413 Peptidase propeptide and YPEB domain SE2219 PF01447 Thermolysin metallopeptidase, catalytic domain SE2219 PF02868 Thermolysin metallopeptidase, alpha-helical domain SE2220 PF07687 Peptidase dimerisation domain SE2220 PF01546 Peptidase family M20/M25/M40 SE2227 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SE2227 PF00874 PRD domain SE2227 PF05043 Mga helix-turn-helix domain SE2227 PF08279 HTH domain SE2228 PF02378 Phosphotransferase system, EIIC SE2228 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SE2228 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SE2229 PF01238 Phosphomannose isomerase type I SE2230 PF01061 ABC-2 type transporter SE2231 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SE2231 PF05257 CHAP domain SE2232 PF01468 GA module SE2233 PF02566 OsmC-like protein SE2237 PF01613 Flavin reductase like domain SE2238 PF07690 Major Facilitator Superfamily SE2240 PF01641 SelR domain SE2240 PF01625 Peptide methionine sulfoxide reductase SE2243 PF00534 Glycosyl transferases group 1 SE2244 PF07516 SecA Wing and Scaffold domain SE2244 PF01043 SecA preprotein cross-linking domain SE2244 PF07517 SecA DEAD-like domain SE2246 PF16929 Accessory Sec system GspB-transporter SE2247 PF16993 Accessory Sec system protein Asp1 SE2248 PF00344 SecY translocase SE2253 PF00528 Binding-protein-dependent transport system inner membrane component SE2254 PF00528 Binding-protein-dependent transport system inner membrane component SE2255 PF00005 ABC transporter SE2258 PF02872 5'-nucleotidase, C-terminal domain SE2258 PF00149 Calcineurin-like phosphoesterase SE2259 PF07690 Major Facilitator Superfamily SE2261 PF01174 SNO glutamine amidotransferase family SE2262 PF01680 SOR/SNZ family SE2263 PF00155 Aminotransferase class I and II SE2263 PF00392 Bacterial regulatory proteins, gntR family SE2266 PF00152 tRNA synthetases class II (D, K and N) SE2266 PF01336 OB-fold nucleic acid binding domain SE2267 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SE2268 PF02152 Dihydroneopterin aldolase SE2269 PF00809 Pterin binding enzyme SE2270 PF00291 Pyridoxal-phosphate dependent enzyme SE2271 PF01430 Hsp33 protein SE2272 PF00004 ATPase family associated with various cellular activities (AAA) SE2272 PF17862 AAA+ lid domain SE2272 PF06480 FtsH Extracellular SE2272 PF01434 Peptidase family M41 SE2273 PF00156 Phosphoribosyl transferase domain SE2274 PF01171 PP-loop family SE2274 PF11734 TilS substrate C-terminal domain SE2275 PF00575 S1 RNA binding domain SE2277 PF01479 S4 domain SE2278 PF03819 MazG nucleotide pyrophosphohydrolase domain SE2278 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SE2279 PF01943 Polysaccharide biosynthesis protein SE2279 PF14667 Polysaccharide biosynthesis C-terminal domain SE2280 PF00271 Helicase conserved C-terminal domain SE2280 PF03461 TRCF domain SE2280 PF02559 CarD-like/TRCF domain SE2280 PF00270 DEAD/DEAH box helicase SE2280 PF17757 UvrB interaction domain SE2281 PF01195 Peptidyl-tRNA hydrolase SE2282 PF14693 Ribosomal protein TL5, C-terminal domain SE2282 PF01386 Ribosomal L25p family SE2283 PF14572 Phosphoribosyl synthetase-associated domain SE2283 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SE2284 PF00132 Bacterial transferase hexapeptide (six repeats) SE2284 PF00483 Nucleotidyl transferase SE2285 PF04026 SpoVG SE2286 PF01042 Endoribonuclease L-PSP SE2287 PF00156 Phosphoribosyl transferase domain SE2287 PF09182 Bacterial purine repressor, N-terminal SE2288 PF08544 GHMP kinases C terminal SE2288 PF00288 GHMP kinases N terminal domain SE2289 PF06257 Biofilm formation stimulator VEG SE2290 PF00398 Ribosomal RNA adenine dimethylase SE2291 PF13331 Domain of unknown function (DUF4093) SE2291 PF01751 Toprim domain SE2292 PF01026 TatD related DNase SE2293 PF09334 tRNA synthetases class I (M) SE2293 PF01588 Putative tRNA binding domain SE2293 PF08264 Anticodon-binding domain of tRNA SE2294 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SE2295 PF01541 GIY-YIG catalytic domain SE2296 PF05175 Methyltransferase small domain SE2297 PF06156 Initiation control protein YabA SE2298 PF04468 PSP1 C-terminal conserved region SE2299 PF09115 DNA polymerase III, delta subunit, C terminal SE2300 PF06153 Cyclic-di-AMP receptor SE2301 PF02223 Thymidylate kinase SE2302 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SE2302 PF01276 Orn/Lys/Arg decarboxylase, major domain SE2303 PF13302 Acetyltransferase (GNAT) domain SE2305 PF02132 RecR protein SE2305 PF13662 Toprim domain SE2306 PF02575 YbaB/EbfC DNA-binding family SE2307 PF12169 DNA polymerase III subunits gamma and tau domain III SE2309 PF03601 Conserved hypothetical protein 698 SE2310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SE2310 PF03466 LysR substrate binding domain SE2311 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SE2311 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE2312 PF01493 GXGXG motif SE2312 PF00310 Glutamine amidotransferases class-II SE2312 PF04898 Glutamate synthase central domain SE2312 PF01645 Conserved region in glutamate synthase SE2313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SE2313 PF03466 LysR substrate binding domain SE2316 PF00293 NUDIX domain SE2318 PF00534 Glycosyl transferases group 1 SE2318 PF09318 Glycosyl transferase 1 domain A SE2319 PF01476 LysM domain SE2319 PF05257 CHAP domain SE2320 PF03180 NLPA lipoprotein SE2321 PF00528 Binding-protein-dependent transport system inner membrane component SE2322 PF09383 NIL domain SE2322 PF00005 ABC transporter SE2323 PF01053 Cys/Met metabolism PLP-dependent enzyme SE2324 PF00291 Pyridoxal-phosphate dependent enzyme SE2326 PF00209 Sodium:neurotransmitter symporter family SE2328 PF12146 Serine aminopeptidase, S33 SE2330 PF10057 Uncharacterized conserved protein (DUF2294) SE2332 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) SE2333 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SE2333 PF00361 Proton-conducting membrane transporter SE2335 PF07683 Cobalamin synthesis protein cobW C-terminal domain SE2335 PF02492 CobW/HypB/UreG, nucleotide-binding domain SE2339 PF03358 NADPH-dependent FMN reductase SE2345 PF02899 Phage integrase, N-terminal SAM-like domain SE2345 PF00589 Phage integrase family SE2347 PF00117 Glutamine amidotransferase class-I SE2347 PF00958 GMP synthase C terminal domain SE2348 PF00478 IMP dehydrogenase / GMP reductase domain SE2348 PF00571 CBS domain SE2349 PF00860 Permease family SE2351 PF11181 Heat induced stress protein YflT SE2354 PF00375 Sodium:dicarboxylate symporter family SE2355 PF00881 Nitroreductase family SE2357 PF00578 AhpC/TSA family SE2358 PF13192 Thioredoxin domain SE2358 PF07992 Pyridine nucleotide-disulphide oxidoreductase SE2364 PF00300 Histidine phosphatase superfamily (branch 1) SE2365 PF01810 LysE type translocator SE2370 PF01084 Ribosomal protein S18 SE2371 PF00436 Single-strand binding protein family SE2372 PF01250 Ribosomal protein S6 SE2375 PF06071 Protein of unknown function (DUF933) SE2375 PF01926 50S ribosome-binding GTPase SE2376 PF06107 Bacterial protein of unknown function (DUF951) SE2377 PF00924 Mechanosensitive ion channel SE2378 PF17762 HTH domain found in ParB protein SE2378 PF02195 ParB-like nuclease domain SE2379 PF01053 Cys/Met metabolism PLP-dependent enzyme SE2380 PF01053 Cys/Met metabolism PLP-dependent enzyme SE2381 PF02219 Methylenetetrahydrofolate reductase SE2381 PF02574 Homocysteine S-methyltransferase SE2382 PF08267 Cobalamin-independent synthase, N-terminal domain SE2382 PF01717 Cobalamin-independent synthase, Catalytic domain SE2384 PF00108 Thiolase, N-terminal domain SE2384 PF02803 Thiolase, C-terminal domain SE2386 PF01381 Helix-turn-helix SE2388 PF00005 ABC transporter SE2392 PF13302 Acetyltransferase (GNAT) domain SE2395 PF04650 YSIRK type signal peptide SE2395 PF17961 Bacterial Ig domain SE2395 PF00746 LPXTG cell wall anchor motif SE2395 PF17210 SdrD B-like domain SE2397 PF10502 Signal peptidase, peptidase S26 SE2400 PF00005 ABC transporter SE2401 PF02687 FtsX-like permease family SE2403 PF04650 YSIRK type signal peptide SE2405 PF12704 MacB-like periplasmic core domain SE2405 PF02687 FtsX-like permease family SE2406 PF00005 ABC transporter SE2414 PF02195 ParB-like nuclease domain SE2414 PF17762 HTH domain found in ParB protein SE2415 PF02527 rRNA small subunit methyltransferase G SE2416 PF01134 Glucose inhibited division protein A SE2416 PF13932 GidA associated domain SE2417 PF01926 50S ribosome-binding GTPase SE2417 PF10396 GTP-binding protein TrmE N-terminus SE2417 PF12631 MnmE helical domain SE2418 PF00825 Ribonuclease P SE2419 PF00468 Ribosomal protein L34 SE_p303 PF02463 RecF/RecN/SMC N terminal domain SE_p308 PF03989 DNA gyrase C-terminal domain, beta-propeller SE_p308 PF00521 DNA gyrase/topoisomerase IV, subunit A SE_p520 PF03796 DnaB-like helicase C terminal domain SE_p520 PF00772 DnaB-like helicase N terminal domain SE_p602 PF08299 Bacterial dnaA protein helix-turn-helix SE_p602 PF00308 Bacterial dnaA protein SE_p602 PF11638 DnaA N-terminal domain SE_p605 PF00712 DNA polymerase III beta subunit, N-terminal domain SE_p605 PF02768 DNA polymerase III beta subunit, C-terminal domain SE_p605 PF02767 DNA polymerase III beta subunit, central domain SE_p610 PF00986 DNA gyrase B subunit, carboxyl terminus SE_p610 PF01751 Toprim domain SE_p610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SE_p610 PF00204 DNA gyrase B