SE0001 SM00382 ATPases associated with a variety of cellular activities SE0001 SM00760 Bacterial dnaA protein helix-turn-helix domain SE0002 SM00480 DNA polymerase III beta subunit SE0004 SM00387 Histidine kinase-like ATPases SE0004 SM00433 TopoisomeraseII SE0005 SM00434 DNA Topoisomerase IV SE0013 SM00267 diguanylate cyclase SE0016 SM00788 Adenylosuccinate synthetase SE0018 SM00448 cheY-homologous receiver domain SE0018 SM00862 Transcriptional regulatory protein, C terminal SE0019 SM00091 PAS domain SE0019 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SE0019 SM00387 Histidine kinase-like ATPases SE0019 SM00388 His Kinase A (phosphoacceptor) domain SE0022 SM00849 Metallo-beta-lactamase superfamily SE0036 SM00857 Resolvase, N terminal domain SE0037 SM00857 Resolvase, N terminal domain SE0056 SM00857 Resolvase, N terminal domain SE0057 SM00857 Resolvase, N terminal domain SE0073 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SE0081 SM00422 helix_turn_helix, mercury resistance SE0094 SM00382 ATPases associated with a variety of cellular activities SE0096 SM00829 Enoylreductase SE0117 SM00382 ATPases associated with a variety of cellular activities SE0120 SM00448 cheY-homologous receiver domain SE0120 SM00862 Transcriptional regulatory protein, C terminal SE0121 SM00387 Histidine kinase-like ATPases SE0129 SM00450 Rhodanese Homology Domain SE0129 SM00849 Metallo-beta-lactamase superfamily SE0134 SM00226 Low molecular weight phosphatase family SE0136 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SE0139 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SE0165 SM00342 helix_turn_helix, arabinose operon control protein SE0165 SM00448 cheY-homologous receiver domain SE0175 SM01208 SE0175 SE0195 SM00900 SE0195 SE0198 SM00382 ATPases associated with a variety of cellular activities SE0209 SM00382 ATPases associated with a variety of cellular activities SE0210 SM00382 ATPases associated with a variety of cellular activities SE0212 SM00382 ATPases associated with a variety of cellular activities SE0222 SM00116 Domain in cystathionine beta-synthase and other proteins. SE0222 SM00382 ATPases associated with a variety of cellular activities SE0234 SM00729 Elongator protein 3, MiaB family, Radical SAM SE0234 SM00876 Biotin and Thiamin Synthesis associated domain SE0237 SM01120 SE0237 SE0255 SM00861 Transketolase, pyrimidine binding domain SE0262 SM00450 Rhodanese Homology Domain SE0264 SM00867 YceI-like domain SE0287 SM00382 ATPases associated with a variety of cellular activities SE0287 SM01086 C-terminal, D2-small domain, of ClpB protein SE0288 SM00382 ATPases associated with a variety of cellular activities SE0289 SM00670 Large family of predicted nucleotide-binding domains SE0292 SM00840 SE0292 SE0294 SM00967 RNA 2'-O ribose methyltransferase substrate binding SE0299 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SE0300 SM00649 Ribosomal protein L11/L12 SE0307 SM00663 RNA polymerase I subunit A N-terminus SE0311 SM00838 Elongation factor G C-terminus SE0311 SM00889 Elongation factor G, domain IV SE0341 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SE0351 SM00986 Uracil DNA glycosylase superfamily SE0351 SM00987 UreE urease accessory protein, C-terminal domain SE0369 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE0372 SM01001 AIR carboxylase SE0375 SM00829 Enoylreductase SE0380 SM00836 DALR anticodon binding domain SE0380 SM01016 Arginyl tRNA synthetase N terminal dom SE0381 SM00478 endonuclease III SE0382 SM00422 helix_turn_helix, mercury resistance SE0407 SM00382 ATPases associated with a variety of cellular activities SE0408 SM00529 Helix-turn-helix diphteria tox regulatory element SE0408 SM00899 SE0408 SE0411 SM00382 ATPases associated with a variety of cellular activities SE0418 SM00382 ATPases associated with a variety of cellular activities SE0421 SM00382 ATPases associated with a variety of cellular activities SE0427 SM00448 cheY-homologous receiver domain SE0427 SM00862 Transcriptional regulatory protein, C terminal SE0428 SM00387 Histidine kinase-like ATPases SE0429 SM00382 ATPases associated with a variety of cellular activities SE0433 SM00257 Lysin motif SE0435 SM00342 helix_turn_helix, arabinose operon control protein SE0453 SM00871 Bacterial transcription activator, effector binding domain SE0455 SM00382 ATPases associated with a variety of cellular activities SE0456 SM00382 ATPases associated with a variety of cellular activities SE0457 SM00347 helix_turn_helix multiple antibiotic resistance protein SE0459 SM00833 Cobalamin synthesis protein cobW C-terminal domain SE0470 SM00420 helix_turn_helix, Deoxyribose operon repressor SE0470 SM01134 SE0470 SE0474 SM01091 Transporter associated domain SE0478 SM00387 Histidine kinase-like ATPases SE0478 SM00388 His Kinase A (phosphoacceptor) domain SE0479 SM00448 cheY-homologous receiver domain SE0479 SM00862 Transcriptional regulatory protein, C terminal SE0492 SM00796 Allophanate hydrolase subunit 1 SE0493 SM00797 Allophanate hydrolase subunit 2 SE0500 SM00382 ATPases associated with a variety of cellular activities SE0501 SM00341 Helicase and RNase D C-terminal SE0501 SM00487 DEAD-like helicases superfamily SE0501 SM00490 helicase superfamily c-terminal domain SE0501 SM00956 SE0501 SE0502 SM00382 ATPases associated with a variety of cellular activities SE0507 SM00046 Diacylglycerol kinase catalytic domain (presumed) SE0517 SM00382 ATPases associated with a variety of cellular activities SE0528 SM00267 diguanylate cyclase SE0532 SM00490 helicase superfamily c-terminal domain SE0535 SM00957 SecA DEAD-like domain SE0535 SM00958 SecA preprotein cross-linking domain SE0536 SM00937 SE0536 SE0537 SM00257 Lysin motif SE0541 SM00487 DEAD-like helicases superfamily SE0541 SM00490 helicase superfamily c-terminal domain SE0546 SM00028 Tetratricopeptide repeats SE0557 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SE0561 SM01192 SE0561 SE0561 SM01193 SE0561 SE0565 SM00316 Ribosomal protein S1-like RNA-binding domain SE0565 SM00357 Cold shock protein domain SE0565 SM00955 SE0565 SE0578 SM00357 Cold shock protein domain SE0587 SM00855 Phosphoglycerate mutase family SE0598 SM00493 SE0598 SE0600 SM00382 ATPases associated with a variety of cellular activities SE0600 SM00930 SE0600 SE0606 SM00382 ATPases associated with a variety of cellular activities SE0617 SM00729 Elongator protein 3, MiaB family, Radical SAM SE0647 SM01298 SE0647 SE0654 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SE0674 SM00382 ATPases associated with a variety of cellular activities SE0674 SM01086 C-terminal, D2-small domain, of ClpB protein SE0678 SM00825 Beta-ketoacyl synthase SE0682 SM00382 ATPases associated with a variety of cellular activities SE0683 SM00382 ATPases associated with a variety of cellular activities SE0693 SM01118 SE0693 SE0695 SM00954 Region found in RelA / SpoT proteins SE0698 SM00116 Domain in cystathionine beta-synthase and other proteins. SE0698 SM00924 MgtE intracellular N domain SE0723 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SE0729 SM00914 SE0729 SE0749 SM00347 helix_turn_helix multiple antibiotic resistance protein SE0750 SM00047 Lysozyme subfamily 2 SE0750 SM00644 SE0750 SE0762 SM01001 AIR carboxylase SE0766 SM01211 SE0766 SE0771 SM00798 AICARFT/IMPCHase bienzyme SE0771 SM00851 MGS-like domain SE0772 SM01209 SE0772 SE0772 SM01210 SE0772 SE0774 SM00382 ATPases associated with a variety of cellular activities SE0787 SM00849 Metallo-beta-lactamase superfamily SE0792 SM00861 Transketolase, pyrimidine binding domain SE0796 SM00530 Helix-turn-helix XRE-family like proteins SE0797 SM00382 ATPases associated with a variety of cellular activities SE0807 SM00838 Elongation factor G C-terminus SE0813 SM00878 Biotin carboxylase C-terminal domain SE0830 SM00967 RNA 2'-O ribose methyltransferase substrate binding SE0832 SM00873 B3/4 domain SE0832 SM00874 tRNA synthetase B5 domain SE0832 SM00896 Ferredoxin-fold anticodon binding domain SE0836 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SE0836 SM00481 DNA polymerase alpha chain like domain SE0836 SM00483 DNA polymerase X family SE0837 SM00463 Small MutS-related domain SE0837 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SE0837 SM00534 ATPase domain of DNA mismatch repair MUTS family SE0839 SM00465 GIY-YIG type nucleases (URI domain) SE0856 SM00740 SE0856 SE0860 SM00842 Cell division protein FtsA SE0861 SM00864 Tubulin/FtsZ family, GTPase domain SE0861 SM00865 Tubulin/FtsZ family, C-terminal domain SE0866 SM00363 S4 RNA-binding domain SE0872 SM00363 S4 RNA-binding domain SE0878 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SE0879 SM00851 MGS-like domain SE0879 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SE0879 SM01209 SE0879 SE0880 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SE0885 SM00072 Guanylate kinase homologues. SE0886 SM01409 SE0886 SE0888 SM00487 DEAD-like helicases superfamily SE0888 SM00490 helicase superfamily c-terminal domain SE0894 SM00331 Sigma factor PP2C-like phosphatases SE0894 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SE0895 SM00220 Serine/Threonine protein kinases, catalytic domain SE0895 SM00740 SE0895 SE0898 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SE0901 SM01120 SE0901 SE0901 SM01121 SE0901 SE0902 SM00487 DEAD-like helicases superfamily SE0902 SM00490 helicase superfamily c-terminal domain SE0905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SE0906 SM00822 SE0906 SE0908 SM00358 Double-stranded RNA binding motif SE0908 SM00535 Ribonuclease III family SE0909 SM00968 SMC proteins Flexible Hinge Domain SE0910 SM00382 ATPases associated with a variety of cellular activities SE0910 SM00962 SRP54-type protein, GTPase domain SE0910 SM00963 SRP54-type protein, helical bundle domain SE0912 SM00382 ATPases associated with a variety of cellular activities SE0912 SM00962 SRP54-type protein, GTPase domain SE0912 SM00963 SRP54-type protein, helical bundle domain SE0924 SM00881 CoA binding domain SE0926 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SE0926 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SE0926 SM00493 SE0926 SE0930 SM00382 ATPases associated with a variety of cellular activities SE0930 SM01086 C-terminal, D2-small domain, of ClpB protein SE0938 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SE0940 SM00479 SE0940 SE0940 SM00481 DNA polymerase alpha chain like domain SE0942 SM00316 Ribosomal protein S1-like RNA-binding domain SE0942 SM00322 K homology RNA-binding domain SE0949 SM00904 Riboflavin kinase SE0950 SM01387 SE0950 SE0951 SM00316 Ribosomal protein S1-like RNA-binding domain SE0951 SM00322 K homology RNA-binding domain SE0952 SM00849 Metallo-beta-lactamase superfamily SE0953 SM00382 ATPases associated with a variety of cellular activities SE0953 SM00843 SE0953 SE0954 SM00866 SE0954 SE0959 SM00530 Helix-turn-helix XRE-family like proteins SE0961 SM00852 Probable molybdopterin binding domain SE0963 SM00382 ATPases associated with a variety of cellular activities SE0964 SM00322 K homology RNA-binding domain SE0964 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE0971 SM00729 Elongator protein 3, MiaB family, Radical SAM SE0974 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SE0974 SM00534 ATPase domain of DNA mismatch repair MUTS family SE0975 SM00853 MutL C terminal dimerisation domain SE0975 SM01340 SE0975 SE0986 SM00422 helix_turn_helix, mercury resistance SE0987 SM01230 SE0987 SE0997 SM00155 Phospholipase D. Active site motifs. SE0998 SM00382 ATPases associated with a variety of cellular activities SE1002 SM00421 helix_turn_helix, Lux Regulon SE1002 SM00448 cheY-homologous receiver domain SE1004 SM00318 Staphylococcal nuclease homologues SE1013 SM01321 SE1013 SE1016 SM01060 SE1016 SE1019 SM01240 SE1019 SE1025 SM00861 Transketolase, pyrimidine binding domain SE1035 SM01207 SE1035 SE1036 SM00387 Histidine kinase-like ATPases SE1036 SM00433 TopoisomeraseII SE1037 SM00434 DNA Topoisomerase IV SE1039 SM01061 CAT RNA binding domain SE1060 SM00382 ATPases associated with a variety of cellular activities SE1067 SM00382 ATPases associated with a variety of cellular activities SE1072 SM00382 ATPases associated with a variety of cellular activities SE1074 SM00859 Semialdehyde dehydrogenase, NAD binding domain SE1075 SM01130 SE1075 SE1079 SM01005 Alanine racemase, C-terminal domain SE1082 SM00382 ATPases associated with a variety of cellular activities SE1086 SM00357 Cold shock protein domain SE1091 SM00327 von Willebrand factor (vWF) type A domain SE1092 SM00382 ATPases associated with a variety of cellular activities SE1097 SM00861 Transketolase, pyrimidine binding domain SE1099 SM00387 Histidine kinase-like ATPases SE1099 SM00388 His Kinase A (phosphoacceptor) domain SE1100 SM00448 cheY-homologous receiver domain SE1100 SM00862 Transcriptional regulatory protein, C terminal SE1102 SM00420 helix_turn_helix, Deoxyribose operon repressor SE1102 SM01134 SE1102 SE1108 SM00382 ATPases associated with a variety of cellular activities SE1109 SM00014 Acid phosphatase homologues SE1113 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SE1113 SM00245 tail specific protease SE1121 SM00382 ATPases associated with a variety of cellular activities SE1124 SM00932 Scaffold protein Nfu/NifU N terminal SE1128 SM00844 GA module SE1130 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SE1130 SM00475 5'-3' exonuclease SE1133 SM00981 SE1133 SE1140 SM00478 endonuclease III SE1140 SM00525 SE1140 SE1143 SM00479 SE1143 SE1143 SM00491 SE1143 SE1151 SM00914 SE1151 SE1152 SM00028 Tetratricopeptide repeats SE1156 SM00562 SE1156 SE1160 SM00411 bacterial (prokaryotic) histone like domain SE1164 SM00316 Ribosomal protein S1-like RNA-binding domain SE1165 SM00316 Ribosomal protein S1-like RNA-binding domain SE1167 SM00870 SE1167 SE1169 SM00257 Lysin motif SE1170 SM00487 DEAD-like helicases superfamily SE1170 SM00490 helicase superfamily c-terminal domain SE1175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SE1175 SM00387 Histidine kinase-like ATPases SE1175 SM00388 His Kinase A (phosphoacceptor) domain SE1176 SM00448 cheY-homologous receiver domain SE1176 SM00862 Transcriptional regulatory protein, C terminal SE1177 SM00363 S4 RNA-binding domain SE1190 SM00342 helix_turn_helix, arabinose operon control protein SE1190 SM00871 Bacterial transcription activator, effector binding domain SE1191 SM00642 Alpha-amylase domain SE1192 SM01350 SE1192 SE1197 SM00861 Transketolase, pyrimidine binding domain SE1207 SM00878 Biotin carboxylase C-terminal domain SE1212 SM00859 Semialdehyde dehydrogenase, NAD binding domain SE1213 SM00841 Elongation factor P, C-terminal SE1213 SM01185 SE1213 SE1218 SM00450 Rhodanese Homology Domain SE1231 SM00849 Metallo-beta-lactamase superfamily SE1243 SM00382 ATPases associated with a variety of cellular activities SE1244 SM00518 AP endonuclease family 2 SE1245 SM00487 DEAD-like helicases superfamily SE1245 SM00490 helicase superfamily c-terminal domain SE1249 SM00400 zinc finger SE1249 SM00493 SE1249 SE1263 SM00729 Elongator protein 3, MiaB family, Radical SAM SE1266 SM00271 DnaJ molecular chaperone homology domain SE1270 SM00729 Elongator protein 3, MiaB family, Radical SAM SE1271 SM00838 Elongation factor G C-terminus SE1274 SM00849 Metallo-beta-lactamase superfamily SE1276 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SE1279 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE1281 SM01103 SE1281 SE1288 SM00878 Biotin carboxylase C-terminal domain SE1290 SM00797 Allophanate hydrolase subunit 2 SE1291 SM00796 Allophanate hydrolase subunit 1 SE1292 SM01321 SE1292 SE1299 SM00732 Likely ribonuclease with RNase H fold. SE1301 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SE1302 SM00382 ATPases associated with a variety of cellular activities SE1303 SM00028 Tetratricopeptide repeats SE1309 SM00382 ATPases associated with a variety of cellular activities SE1313 SM00287 Bacterial SH3 domain homologues SE1313 SM00646 SE1313 SE1315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE1315 SM00954 Region found in RelA / SpoT proteins SE1321 SM01323 SE1321 SE1324 SM00382 ATPases associated with a variety of cellular activities SE1325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SE1343 SM01004 Delta-aminolevulinic acid dehydratase SE1349 SM00382 ATPases associated with a variety of cellular activities SE1349 SM00994 ClpX C4-type zinc finger SE1349 SM01086 C-terminal, D2-small domain, of ClpB protein SE1357 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SE1361 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SE1366 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SE1366 SM01232 SE1366 SE1367 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SE1367 SM00474 3'-5' exonuclease SE1367 SM00475 5'-3' exonuclease SE1367 SM00482 DNA polymerase A domain SE1368 SM00091 PAS domain SE1368 SM00387 Histidine kinase-like ATPases SE1368 SM00388 His Kinase A (phosphoacceptor) domain SE1369 SM00448 cheY-homologous receiver domain SE1369 SM00862 Transcriptional regulatory protein, C terminal SE1370 SM01329 SE1370 SE1377 SM00919 Malic enzyme, NAD binding domain SE1377 SM01274 SE1377 SE1378 SM00481 DNA polymerase alpha chain like domain SE1380 SM00116 Domain in cystathionine beta-synthase and other proteins. SE1382 SM00849 Metallo-beta-lactamase superfamily SE1384 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SE1384 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SE1391 SM00981 SE1391 SE1394 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SE1396 SM00363 S4 RNA-binding domain SE1396 SM01390 SE1396 SE1404 SM00563 Phosphate acyltransferases SE1405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SE1406 SM00363 S4 RNA-binding domain SE1409 SM00354 helix_turn _helix lactose operon repressor SE1410 SM00830 Chorismate mutase type II SE1414 SM00843 SE1414 SE1426 SM00363 S4 RNA-binding domain SE1430 SM00450 Rhodanese Homology Domain SE1433 SM00729 Elongator protein 3, MiaB family, Radical SAM SE1443 SM00047 Lysozyme subfamily 2 SE1462 SM01234 SE1462 SE1478 SM00400 zinc finger SE1482 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SE1482 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SE1482 SM00493 SE1482 SE1517 SM00382 ATPases associated with a variety of cellular activities SE1523 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE1528 SM00530 Helix-turn-helix XRE-family like proteins SE1529 SM00421 helix_turn_helix, Lux Regulon SE1529 SM00448 cheY-homologous receiver domain SE1530 SM00387 Histidine kinase-like ATPases SE1540 SM00382 ATPases associated with a variety of cellular activities SE1541 SM00062 Bacterial periplasmic substrate-binding proteins SE1541 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SE1550 SM00382 ATPases associated with a variety of cellular activities SE1552 SM00478 endonuclease III SE1552 SM00525 SE1552 SE1566 SM00226 Low molecular weight phosphatase family SE1569 SM00421 helix_turn_helix, Lux Regulon SE1569 SM00448 cheY-homologous receiver domain SE1570 SM00387 Histidine kinase-like ATPases SE1579 SM00479 SE1579 SE1583 SM00046 Diacylglycerol kinase catalytic domain (presumed) SE1584 SM00845 GatB domain SE1589 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SE1589 SM00292 breast cancer carboxy-terminal domain SE1589 SM00532 Ligase N family SE1593 SM00998 Adenylosuccinate lyase C-terminus SE1600 SM00710 Parallel beta-helix repeats SE1602 SM01131 SE1602 SE1622 SM00382 ATPases associated with a variety of cellular activities SE1624 SM00382 ATPases associated with a variety of cellular activities SE1625 SM00345 helix_turn_helix gluconate operon transcriptional repressor SE1630 SM00883 Chaperonin 10 Kd subunit SE1635 SM00793 Accessory gene regulator B SE1636 SM00794 Staphylococcal AgrD protein SE1638 SM00448 cheY-homologous receiver domain SE1638 SM00850 LytTr DNA-binding domain SE1640 SM00640 Glycosyl hydrolases family 32 SE1643 SM00354 helix_turn _helix lactose operon repressor SE1647 SM00881 CoA binding domain SE1648 SM00382 ATPases associated with a variety of cellular activities SE1649 SM00534 ATPase domain of DNA mismatch repair MUTS family SE1658 SM00917 LeuA allosteric (dimerisation) domain SE1659 SM01329 SE1659 SE1666 SM00731 SprT homologues. SE1667 SM00316 Ribosomal protein S1-like RNA-binding domain SE1667 SM00732 Likely ribonuclease with RNase H fold. SE1671 SM00331 Sigma factor PP2C-like phosphatases SE1671 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SE1674 SM01005 Alanine racemase, C-terminal domain SE1679 SM00487 DEAD-like helicases superfamily SE1679 SM00490 helicase superfamily c-terminal domain SE1687 SM00155 Phospholipase D. Active site motifs. SE1688 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SE1700 SM00382 ATPases associated with a variety of cellular activities SE1712 SM00226 Low molecular weight phosphatase family SE1716 SM00937 SE1716 SE1719 SM00357 Cold shock protein domain SE1719 SM00382 ATPases associated with a variety of cellular activities SE1719 SM00959 Rho termination factor, N-terminal domain SE1735 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SE1736 SM01133 SE1736 SE1746 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SE1777 SM00829 Enoylreductase SE1778 SM00829 Enoylreductase SE1784 SM01133 SE1784 SE1788 SM00420 helix_turn_helix, Deoxyribose operon repressor SE1788 SM01134 SE1788 SE1794 SM00382 ATPases associated with a variety of cellular activities SE1795 SM00382 ATPases associated with a variety of cellular activities SE1797 SM00662 RNA polymerases D SE1801 SM00316 Ribosomal protein S1-like RNA-binding domain SE1812 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SE1814 SM01374 SE1814 SE1818 SM00322 K homology RNA-binding domain SE1821 SM01382 SE1821 SE1821 SM01383 SE1821 SE1825 SM01403 SE1825 SE1828 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SE1828 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SE1828 SM00493 SE1828 SE1837 SM00347 helix_turn_helix multiple antibiotic resistance protein SE1841 SM00729 Elongator protein 3, MiaB family, Radical SAM SE1846 SM00852 Probable molybdopterin binding domain SE1848 SM00852 Probable molybdopterin binding domain SE1850 SM00382 ATPases associated with a variety of cellular activities SE1864 SM00988 UreE urease accessory protein, N-terminal domain SE1871 SM00342 helix_turn_helix, arabinose operon control protein SE1881 SM00047 Lysozyme subfamily 2 SE1885 SM00420 helix_turn_helix, Deoxyribose operon repressor SE1904 SM00903 Flavin reductase like domain SE1937 SM00347 helix_turn_helix multiple antibiotic resistance protein SE1939 SM00382 ATPases associated with a variety of cellular activities SE1941 SM00448 cheY-homologous receiver domain SE1941 SM00862 Transcriptional regulatory protein, C terminal SE1942 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SE1942 SM00387 Histidine kinase-like ATPases SE1942 SM00388 His Kinase A (phosphoacceptor) domain SE1950 SM00829 Enoylreductase SE1961 SM00342 helix_turn_helix, arabinose operon control protein SE1967 SM00347 helix_turn_helix multiple antibiotic resistance protein SE1969 SM00421 helix_turn_helix, Lux Regulon SE1969 SM00448 cheY-homologous receiver domain SE1970 SM00387 Histidine kinase-like ATPases SE1975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SE1991 SM00382 ATPases associated with a variety of cellular activities SE1993 SM00062 Bacterial periplasmic substrate-binding proteins SE1993 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SE1995 SM00855 Phosphoglycerate mutase family SE2011 SM00387 Histidine kinase-like ATPases SE2012 SM00448 cheY-homologous receiver domain SE2012 SM00850 LytTr DNA-binding domain SE2018 SM00116 Domain in cystathionine beta-synthase and other proteins. SE2018 SM00382 ATPases associated with a variety of cellular activities SE2019 SM00829 Enoylreductase SE2025 SM00382 ATPases associated with a variety of cellular activities SE2036 SM00822 SE2036 SE2039 SM00487 DEAD-like helicases superfamily SE2039 SM00490 helicase superfamily c-terminal domain SE2046 SM00345 helix_turn_helix gluconate operon transcriptional repressor SE2046 SM00895 SE2046 SE2048 SM00422 helix_turn_helix, mercury resistance SE2051 SM00014 Acid phosphatase homologues SE2052 SM00954 Region found in RelA / SpoT proteins SE2091 SM00854 Bacterial capsule synthesis protein PGA_cap SE2115 SM00899 SE2115 SE2185 SM00347 helix_turn_helix multiple antibiotic resistance protein SE2193 SM00382 ATPases associated with a variety of cellular activities SE2194 SM00387 Histidine kinase-like ATPases SE2195 SM00448 cheY-homologous receiver domain SE2195 SM00862 Transcriptional regulatory protein, C terminal SE2197 SM00098 Alkaline phosphatase homologues SE2208 SM01321 SE2208 SE2209 SM00347 helix_turn_helix multiple antibiotic resistance protein SE2212 SM00854 Bacterial capsule synthesis protein PGA_cap SE2231 SM00047 Lysozyme subfamily 2 SE2244 SM00957 SecA DEAD-like domain SE2244 SM00958 SecA preprotein cross-linking domain SE2255 SM00382 ATPases associated with a variety of cellular activities SE2256 SM00062 Bacterial periplasmic substrate-binding proteins SE2268 SM00905 Dihydroneopterin aldolase SE2272 SM00382 ATPases associated with a variety of cellular activities SE2274 SM00977 TilS substrate C-terminal domain SE2275 SM00316 Ribosomal protein S1-like RNA-binding domain SE2277 SM00363 S4 RNA-binding domain SE2280 SM00487 DEAD-like helicases superfamily SE2280 SM00490 helicase superfamily c-terminal domain SE2280 SM00982 SE2280 SE2280 SM01058 CarD-like/TRCF domain SE2283 SM01400 SE2283 SE2290 SM00650 Ribosomal RNA adenine dimethylases SE2291 SM00493 SE2291 SE2295 SM00465 GIY-YIG type nucleases (URI domain) SE2305 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SE2305 SM00493 SE2305 SE2307 SM00382 ATPases associated with a variety of cellular activities SE2319 SM00257 Lysin motif SE2322 SM00382 ATPases associated with a variety of cellular activities SE2322 SM00930 SE2322 SE2329 SM00014 Acid phosphatase homologues SE2335 SM00833 Cobalamin synthesis protein cobW C-terminal domain SE2348 SM00116 Domain in cystathionine beta-synthase and other proteins. SE2348 SM01240 SE2348 SE2364 SM00855 Phosphoglycerate mutase family SE2378 SM00470 ParB-like nuclease domain SE2386 SM00530 Helix-turn-helix XRE-family like proteins SE2388 SM00382 ATPases associated with a variety of cellular activities SE2400 SM00382 ATPases associated with a variety of cellular activities SE2406 SM00382 ATPases associated with a variety of cellular activities SE2409 SM00530 Helix-turn-helix XRE-family like proteins SE2414 SM00470 ParB-like nuclease domain SE2416 SM01228 SE2416 SE_p605 SM00480 DNA polymerase III beta subunit