locus-tag class description CYD28_RS00005 PF00308 Bacterial dnaA protein CYD28_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CYD28_RS00005 PF11638 DnaA N-terminal domain CYD28_RS00010 PF02767 DNA polymerase III beta subunit, central domain CYD28_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CYD28_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CYD28_RS00020 PF02463 RecF/RecN/SMC N terminal domain CYD28_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus CYD28_RS00025 PF00204 DNA gyrase B CYD28_RS00025 PF01751 Toprim domain CYD28_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller CYD28_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A CYD28_RS00035 PF01256 Carbohydrate kinase CYD28_RS00040 PF02403 Seryl-tRNA synthetase N-terminal domain CYD28_RS00040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYD28_RS00045 PF03591 AzlC protein CYD28_RS00055 PF00561 alpha/beta hydrolase fold CYD28_RS00065 PF02272 DHHA1 domain CYD28_RS00065 PF01368 DHH family CYD28_RS00070 PF03948 Ribosomal protein L9, C-terminal domain CYD28_RS00070 PF01281 Ribosomal protein L9, N-terminal domain CYD28_RS00075 PF03796 DnaB-like helicase C terminal domain CYD28_RS00075 PF00772 DnaB-like helicase N terminal domain CYD28_RS00080 PF00709 Adenylosuccinate synthetase CYD28_RS00095 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS00095 PF00072 Response regulator receiver domain CYD28_RS00100 PF00989 PAS fold CYD28_RS00100 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS00100 PF00672 HAMP domain CYD28_RS00105 PF07435 YycH protein CYD28_RS00115 PF00753 Metallo-beta-lactamase superfamily CYD28_RS00120 PF02590 Predicted SPOUT methyltransferase CYD28_RS00125 PF18273 Type III R-M EcoP15I C-terminal domain CYD28_RS00125 PF01555 DNA methylase CYD28_RS00130 PF04851 Type III restriction enzyme, res subunit CYD28_RS00130 PF08774 VRR-NUC domain CYD28_RS00170 PF07662 Na+ dependent nucleoside transporter C-terminus CYD28_RS00170 PF01773 Na+ dependent nucleoside transporter N-terminus CYD28_RS00175 PF04227 Indigoidine synthase A like protein CYD28_RS00210 PF01022 Bacterial regulatory protein, arsR family CYD28_RS00225 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYD28_RS00225 PF00753 Metallo-beta-lactamase superfamily CYD28_RS00230 PF13686 DsrE/DsrF/DrsH-like family CYD28_RS00235 PF02583 Metal-sensitive transcriptional repressor CYD28_RS00240 PF01925 Sulfite exporter TauE/SafE CYD28_RS00250 PF07563 Protein of unknown function (DUF1541) CYD28_RS00255 PF03747 ADP-ribosylglycohydrolase CYD28_RS00265 PF00294 pfkB family carbohydrate kinase CYD28_RS00270 PF13610 DDE domain CYD28_RS00310 PF01022 Bacterial regulatory protein, arsR family CYD28_RS00315 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYD28_RS00320 PF02040 Arsenical pump membrane protein CYD28_RS00325 PF01022 Bacterial regulatory protein, arsR family CYD28_RS00330 PF13610 DDE domain CYD28_RS00335 PF05223 NTF2-like N-terminal transpeptidase domain CYD28_RS00335 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS00335 PF03717 Penicillin-binding Protein dimerisation domain CYD28_RS00340 PF01575 MaoC like domain CYD28_RS00345 PF03009 Glycerophosphoryl diester phosphodiesterase family CYD28_RS00355 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CYD28_RS00355 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CYD28_RS00360 PF13610 DDE domain CYD28_RS00370 PF07563 Protein of unknown function (DUF1541) CYD28_RS00395 PF13411 MerR HTH family regulatory protein CYD28_RS00405 PF13460 NAD(P)H-binding CYD28_RS00410 PF00107 Zinc-binding dehydrogenase CYD28_RS00410 PF16884 N-terminal domain of oxidoreductase CYD28_RS00425 PF01022 Bacterial regulatory protein, arsR family CYD28_RS00430 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYD28_RS00435 PF02040 Arsenical pump membrane protein CYD28_RS00440 PF01022 Bacterial regulatory protein, arsR family CYD28_RS00450 PF00924 Mechanosensitive ion channel CYD28_RS00465 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYD28_RS00465 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYD28_RS00470 PF01297 Zinc-uptake complex component A periplasmic CYD28_RS00480 PF02525 Flavodoxin-like fold CYD28_RS00490 PF01546 Peptidase family M20/M25/M40 CYD28_RS00490 PF07687 Peptidase dimerisation domain CYD28_RS00500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYD28_RS00500 PF03129 Anticodon binding domain CYD28_RS00500 PF02824 TGS domain CYD28_RS00500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS00505 PF00005 ABC transporter CYD28_RS00525 PF01757 Acyltransferase family CYD28_RS00530 PF00535 Glycosyl transferase family 2 CYD28_RS00530 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CYD28_RS00535 PF01297 Zinc-uptake complex component A periplasmic CYD28_RS00540 PF00950 ABC 3 transport family CYD28_RS00545 PF00005 ABC transporter CYD28_RS00550 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYD28_RS00550 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYD28_RS00555 PF05525 Branched-chain amino acid transport protein CYD28_RS00570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYD28_RS00575 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS00580 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS00585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYD28_RS00585 PF00005 ABC transporter CYD28_RS00590 PF00005 ABC transporter CYD28_RS00610 PF07690 Major Facilitator Superfamily CYD28_RS00615 PF13411 MerR HTH family regulatory protein CYD28_RS00625 PF00571 CBS domain CYD28_RS00625 PF01595 Cyclin M transmembrane N-terminal domain CYD28_RS00625 PF03471 Transporter associated domain CYD28_RS00630 PF02082 Transcriptional regulator CYD28_RS00635 PF13460 NAD(P)H-binding CYD28_RS00655 PF00005 ABC transporter CYD28_RS00660 PF00324 Amino acid permease CYD28_RS00685 PF04650 YSIRK type signal peptide CYD28_RS00710 PF00356 Bacterial regulatory proteins, lacI family CYD28_RS00715 PF00294 pfkB family carbohydrate kinase CYD28_RS00720 PF05025 RbsD / FucU transport protein family CYD28_RS00725 PF00005 ABC transporter CYD28_RS00730 PF02653 Branched-chain amino acid transport system / permease component CYD28_RS00735 PF13407 Periplasmic binding protein domain CYD28_RS00740 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYD28_RS00740 PF02558 Ketopantoate reductase PanE/ApbA CYD28_RS00745 PF02548 Ketopantoate hydroxymethyltransferase CYD28_RS00750 PF02569 Pantoate-beta-alanine ligase CYD28_RS00755 PF02261 Aspartate decarboxylase CYD28_RS00765 PF02557 D-alanyl-D-alanine carboxypeptidase CYD28_RS00770 PF01380 SIS domain CYD28_RS00770 PF01418 Helix-turn-helix domain, rpiR family CYD28_RS00775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYD28_RS00780 PF02378 Phosphotransferase system, EIIC CYD28_RS00785 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CYD28_RS00800 PF01869 BadF/BadG/BcrA/BcrD ATPase family CYD28_RS00810 PF05656 Protein of unknown function (DUF805) CYD28_RS00820 PF00488 MutS domain V CYD28_RS00820 PF01624 MutS domain I CYD28_RS00820 PF05190 MutS family domain IV CYD28_RS00820 PF05192 MutS domain III CYD28_RS00820 PF05188 MutS domain II CYD28_RS00825 PF11208 Protein of unknown function (DUF2992) CYD28_RS00830 PF02040 Arsenical pump membrane protein CYD28_RS00835 PF02525 Flavodoxin-like fold CYD28_RS00840 PF03606 C4-dicarboxylate anaerobic carrier CYD28_RS00855 PF12867 DinB superfamily CYD28_RS00870 PF07690 Major Facilitator Superfamily CYD28_RS00890 PF00890 FAD binding domain CYD28_RS00895 PF00171 Aldehyde dehydrogenase family CYD28_RS00900 PF00107 Zinc-binding dehydrogenase CYD28_RS00900 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS00905 PF01047 MarR family CYD28_RS00910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS00910 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS00925 PF00155 Aminotransferase class I and II CYD28_RS00935 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS00935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS00940 PF00676 Dehydrogenase E1 component CYD28_RS00945 PF02779 Transketolase, pyrimidine binding domain CYD28_RS00945 PF02780 Transketolase, C-terminal domain CYD28_RS00950 PF02817 e3 binding domain CYD28_RS00950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYD28_RS00950 PF00364 Biotin-requiring enzyme CYD28_RS00955 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS00955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS00960 PF03551 Transcriptional regulator PadR-like family CYD28_RS00975 PF01232 Mannitol dehydrogenase Rossmann domain CYD28_RS00975 PF08125 Mannitol dehydrogenase C-terminal domain CYD28_RS00980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYD28_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYD28_RS00985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYD28_RS00985 PF08279 HTH domain CYD28_RS00985 PF00874 PRD domain CYD28_RS00985 PF05043 Mga helix-turn-helix domain CYD28_RS00990 PF02378 Phosphotransferase system, EIIC CYD28_RS00990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYD28_RS01005 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) CYD28_RS01010 PF00892 EamA-like transporter family CYD28_RS01020 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CYD28_RS01035 PF02463 RecF/RecN/SMC N terminal domain CYD28_RS01045 PF02086 D12 class N6 adenine-specific DNA methyltransferase CYD28_RS01060 PF07501 G5 domain CYD28_RS01060 PF00746 LPXTG cell wall anchor motif CYD28_RS01060 PF17041 E domain CYD28_RS01060 PF04650 YSIRK type signal peptide CYD28_RS01075 PF13411 MerR HTH family regulatory protein CYD28_RS01080 PF02525 Flavodoxin-like fold CYD28_RS01100 PF05154 TM2 domain CYD28_RS01110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYD28_RS01110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYD28_RS01115 PF00696 Amino acid kinase family CYD28_RS01125 PF01381 Helix-turn-helix CYD28_RS01135 PF03099 Biotin/lipoate A/B protein ligase family CYD28_RS01135 PF10437 Bacterial lipoate protein ligase C-terminus CYD28_RS01145 PF01661 Macro domain CYD28_RS01150 PF01597 Glycine cleavage H-protein CYD28_RS01155 PF00296 Luciferase-like monooxygenase CYD28_RS01160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CYD28_RS01165 PF04055 Radical SAM superfamily CYD28_RS01165 PF06968 Biotin and Thiamin Synthesis associated domain CYD28_RS01175 PF00939 Sodium:sulfate symporter transmembrane region CYD28_RS01180 PF05684 Protein of unknown function (DUF819) CYD28_RS01185 PF07286 Protein of unknown function (DUF1445) CYD28_RS01195 PF02028 BCCT, betaine/carnitine/choline family transporter CYD28_RS01200 PF01979 Amidohydrolase family CYD28_RS01210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYD28_RS01215 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CYD28_RS01220 PF01380 SIS domain CYD28_RS01220 PF01418 Helix-turn-helix domain, rpiR family CYD28_RS01225 PF00480 ROK family CYD28_RS01230 PF00701 Dihydrodipicolinate synthetase family CYD28_RS01235 PF00474 Sodium:solute symporter family CYD28_RS01255 PF02517 CPBP intramembrane metalloprotease CYD28_RS01260 PF00005 ABC transporter CYD28_RS01265 PF00005 ABC transporter CYD28_RS01265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYD28_RS01270 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS01280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYD28_RS01285 PF01470 Pyroglutamyl peptidase CYD28_RS01300 PF07690 Major Facilitator Superfamily CYD28_RS01305 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CYD28_RS01315 PF17773 UPF0176 acylphosphatase like domain CYD28_RS01315 PF12368 Rhodanase C-terminal CYD28_RS01315 PF00581 Rhodanese-like domain CYD28_RS01320 PF08450 SMP-30/Gluconolactonase/LRE-like region CYD28_RS01325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYD28_RS01325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYD28_RS01325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYD28_RS01325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYD28_RS01345 PF06100 MCRA family CYD28_RS01350 PF17760 UvrA interaction domain CYD28_RS01350 PF17755 UvrA DNA-binding domain CYD28_RS01365 PF00005 ABC transporter CYD28_RS01375 PF01381 Helix-turn-helix CYD28_RS01380 PF02082 Transcriptional regulator CYD28_RS01385 PF00892 EamA-like transporter family CYD28_RS01390 PF07690 Major Facilitator Superfamily CYD28_RS01400 PF02872 5'-nucleotidase, C-terminal domain CYD28_RS01400 PF00149 Calcineurin-like phosphoesterase CYD28_RS01410 PF00005 ABC transporter CYD28_RS01415 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS01420 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS01440 PF00746 LPXTG cell wall anchor motif CYD28_RS01445 PF00344 SecY translocase CYD28_RS01450 PF16993 Accessory Sec system protein Asp1 CYD28_RS01455 PF16929 Accessory Sec system GspB-transporter CYD28_RS01460 PF15432 Accessory Sec secretory system ASP3 CYD28_RS01465 PF07516 SecA Wing and Scaffold domain CYD28_RS01465 PF01043 SecA preprotein cross-linking domain CYD28_RS01465 PF07517 SecA DEAD-like domain CYD28_RS01470 PF00534 Glycosyl transferases group 1 CYD28_RS01480 PF00672 HAMP domain CYD28_RS01480 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS01485 PF00072 Response regulator receiver domain CYD28_RS01485 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS01505 PF01625 Peptide methionine sulfoxide reductase CYD28_RS01525 PF07690 Major Facilitator Superfamily CYD28_RS01535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CYD28_RS01540 PF03176 MMPL family CYD28_RS01545 PF03466 LysR substrate binding domain CYD28_RS01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYD28_RS01550 PF00149 Calcineurin-like phosphoesterase CYD28_RS01555 PF01468 GA module CYD28_RS01560 PF03606 C4-dicarboxylate anaerobic carrier CYD28_RS01565 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CYD28_RS01565 PF02378 Phosphotransferase system, EIIC CYD28_RS01565 PF00367 phosphotransferase system, EIIB CYD28_RS01570 PF05257 CHAP domain CYD28_RS01570 PF05257 CHAP domain CYD28_RS01570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CYD28_RS01570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CYD28_RS01575 PF01061 ABC-2 type transporter CYD28_RS01600 PF01316 Arginine repressor, DNA binding domain CYD28_RS01600 PF02863 Arginine repressor, C-terminal domain CYD28_RS01610 PF13520 Amino acid permease CYD28_RS01615 PF00027 Cyclic nucleotide-binding domain CYD28_RS01625 PF00356 Bacterial regulatory proteins, lacI family CYD28_RS01635 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS01635 PF00107 Zinc-binding dehydrogenase CYD28_RS01640 PF13630 SdpI/YhfL protein family CYD28_RS01650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYD28_RS01650 PF00205 Thiamine pyrophosphate enzyme, central domain CYD28_RS01650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS01660 PF02525 Flavodoxin-like fold CYD28_RS01670 PF02706 Chain length determinant protein CYD28_RS01675 PF13614 AAA domain CYD28_RS01685 PF02719 Polysaccharide biosynthesis protein CYD28_RS01690 PF02719 Polysaccharide biosynthesis protein CYD28_RS01690 PF08485 Polysaccharide biosynthesis protein C-terminal CYD28_RS01695 PF01370 NAD dependent epimerase/dehydratase family CYD28_RS01700 PF02350 UDP-N-acetylglucosamine 2-epimerase CYD28_RS01705 PF00132 Bacterial transferase hexapeptide (six repeats) CYD28_RS01725 PF00534 Glycosyl transferases group 1 CYD28_RS01725 PF13579 Glycosyl transferase 4-like domain CYD28_RS01730 PF02397 Bacterial sugar transferase CYD28_RS01735 PF01370 NAD dependent epimerase/dehydratase family CYD28_RS01740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CYD28_RS01740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CYD28_RS01740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CYD28_RS01745 PF02350 UDP-N-acetylglucosamine 2-epimerase CYD28_RS01750 PF03816 Cell envelope-related transcriptional attenuator domain CYD28_RS01755 PF00245 Alkaline phosphatase CYD28_RS01760 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS01760 PF00072 Response regulator receiver domain CYD28_RS01765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS01770 PF00005 ABC transporter CYD28_RS01800 PF01507 Phosphoadenosine phosphosulfate reductase family CYD28_RS01805 PF00175 Oxidoreductase NAD-binding domain CYD28_RS01805 PF00667 FAD binding domain CYD28_RS01805 PF00258 Flavodoxin CYD28_RS01810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYD28_RS01810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYD28_RS01815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYD28_RS01820 PF14824 Sirohaem biosynthesis protein central CYD28_RS01825 PF01925 Sulfite exporter TauE/SafE CYD28_RS01830 PF01747 ATP-sulfurylase CYD28_RS01830 PF14306 PUA-like domain CYD28_RS01840 PF03600 Citrate transporter CYD28_RS01855 PF03605 Anaerobic c4-dicarboxylate membrane transporter CYD28_RS01860 PF02028 BCCT, betaine/carnitine/choline family transporter CYD28_RS01870 PF00171 Aldehyde dehydrogenase family CYD28_RS01875 PF00732 GMC oxidoreductase CYD28_RS01875 PF05199 GMC oxidoreductase CYD28_RS01880 PF12833 Helix-turn-helix domain CYD28_RS01885 PF07687 Peptidase dimerisation domain CYD28_RS01885 PF01546 Peptidase family M20/M25/M40 CYD28_RS01890 PF07690 Major Facilitator Superfamily CYD28_RS01895 PF07687 Peptidase dimerisation domain CYD28_RS01895 PF01546 Peptidase family M20/M25/M40 CYD28_RS01910 PF00501 AMP-binding enzyme CYD28_RS01910 PF13193 AMP-binding enzyme C-terminal domain CYD28_RS01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYD28_RS01920 PF03466 LysR substrate binding domain CYD28_RS01930 PF00391 PEP-utilising enzyme, mobile domain CYD28_RS01930 PF02896 PEP-utilising enzyme, TIM barrel domain CYD28_RS01930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CYD28_RS01935 PF03618 Kinase/pyrophosphorylase CYD28_RS01940 PF06039 Malate:quinone oxidoreductase (Mqo) CYD28_RS01950 PF00232 Glycosyl hydrolase family 1 CYD28_RS01970 PF00274 Fructose-bisphosphate aldolase class-I CYD28_RS02000 PF03180 NLPA lipoprotein CYD28_RS02005 PF00202 Aminotransferase class-III CYD28_RS02010 PF13520 Amino acid permease CYD28_RS02015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYD28_RS02015 PF00205 Thiamine pyrophosphate enzyme, central domain CYD28_RS02015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS02020 PF03306 Alpha-acetolactate decarboxylase CYD28_RS02040 PF13683 Integrase core domain CYD28_RS02040 PF01610 Transposase CYD28_RS02055 PF02677 Epoxyqueuosine reductase QueH CYD28_RS02065 PF01180 Dihydroorotate dehydrogenase CYD28_RS02070 PF03881 Fructosamine kinase CYD28_RS02100 PF05979 Bacterial protein of unknown function (DUF896) CYD28_RS02105 PF00296 Luciferase-like monooxygenase CYD28_RS02115 PF01551 Peptidase family M23 CYD28_RS02125 PF03976 Polyphosphate kinase 2 (PPK2) CYD28_RS02140 PF01593 Flavin containing amine oxidoreductase CYD28_RS02145 PF00535 Glycosyl transferase family 2 CYD28_RS02155 PF01593 Flavin containing amine oxidoreductase CYD28_RS02160 PF00155 Aminotransferase class I and II CYD28_RS02165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS02165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS02170 PF00403 Heavy-metal-associated domain CYD28_RS02175 PF00403 Heavy-metal-associated domain CYD28_RS02190 PF12464 Maltose acetyltransferase CYD28_RS02190 PF14602 Hexapeptide repeat of succinyl-transferase CYD28_RS02195 PF00171 Aldehyde dehydrogenase family CYD28_RS02215 PF01544 CorA-like Mg2+ transporter protein CYD28_RS02225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CYD28_RS02225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CYD28_RS02230 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CYD28_RS02230 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CYD28_RS02235 PF02803 Thiolase, C-terminal domain CYD28_RS02235 PF00108 Thiolase, N-terminal domain CYD28_RS02240 PF00368 Hydroxymethylglutaryl-coenzyme A reductase CYD28_RS02245 PF01476 LysM domain CYD28_RS02245 PF05257 CHAP domain CYD28_RS02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYD28_RS02255 PF03466 LysR substrate binding domain CYD28_RS02265 PF03788 LrgA family CYD28_RS02270 PF04172 LrgB-like family CYD28_RS02275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYD28_RS02275 PF00205 Thiamine pyrophosphate enzyme, central domain CYD28_RS02275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS02280 PF01610 Transposase CYD28_RS02280 PF13683 Integrase core domain CYD28_RS02285 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CYD28_RS02285 PF00367 phosphotransferase system, EIIB CYD28_RS02285 PF02378 Phosphotransferase system, EIIC CYD28_RS02290 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS02290 PF00107 Zinc-binding dehydrogenase CYD28_RS02300 PF00085 Thioredoxin CYD28_RS02305 PF00056 lactate/malate dehydrogenase, NAD binding domain CYD28_RS02305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CYD28_RS02310 PF07859 alpha/beta hydrolase fold CYD28_RS02315 PF00892 EamA-like transporter family CYD28_RS02325 PF02311 AraC-like ligand binding domain CYD28_RS02325 PF12833 Helix-turn-helix domain CYD28_RS02335 PF08245 Mur ligase middle domain CYD28_RS02340 PF14102 Capsule biosynthesis CapC CYD28_RS02355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYD28_RS02355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYD28_RS02365 PF01842 ACT domain CYD28_RS02365 PF03315 Serine dehydratase beta chain CYD28_RS02370 PF03313 Serine dehydratase alpha chain CYD28_RS02385 PF04203 Sortase domain CYD28_RS02395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS02395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS02405 PF00171 Aldehyde dehydrogenase family CYD28_RS02415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYD28_RS02430 PF00171 Aldehyde dehydrogenase family CYD28_RS02435 PF01047 MarR family CYD28_RS02440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYD28_RS02445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYD28_RS02450 PF01738 Dienelactone hydrolase family CYD28_RS02465 PF06874 Firmicute fructose-1,6-bisphosphatase CYD28_RS02470 PF09335 SNARE associated Golgi protein CYD28_RS02475 PF00899 ThiF family CYD28_RS02480 PF05690 Thiazole biosynthesis protein ThiG CYD28_RS02485 PF05690 Thiazole biosynthesis protein ThiG CYD28_RS02485 PF02597 ThiS family CYD28_RS02490 PF01266 FAD dependent oxidoreductase CYD28_RS02500 PF07690 Major Facilitator Superfamily CYD28_RS02515 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CYD28_RS02520 PF04607 Region found in RelA / SpoT proteins CYD28_RS02535 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS02535 PF07729 FCD domain CYD28_RS02540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYD28_RS02540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYD28_RS02545 PF02447 GntP family permease CYD28_RS02555 PF00483 Nucleotidyl transferase CYD28_RS02560 PF00293 NUDIX domain CYD28_RS02585 PF00106 short chain dehydrogenase CYD28_RS02590 PF01546 Peptidase family M20/M25/M40 CYD28_RS02590 PF07687 Peptidase dimerisation domain CYD28_RS02595 PF13090 Polyphosphate kinase C-terminal domain 2 CYD28_RS02595 PF02503 Polyphosphate kinase middle domain CYD28_RS02595 PF13089 Polyphosphate kinase N-terminal domain CYD28_RS02595 PF17941 Polyphosphate kinase C-terminal domain 1 CYD28_RS02600 PF02541 Ppx/GppA phosphatase family CYD28_RS02605 PF03806 AbgT putative transporter family CYD28_RS02615 PF05343 M42 glutamyl aminopeptidase CYD28_RS02625 PF01053 Cys/Met metabolism PLP-dependent enzyme CYD28_RS02630 PF01645 Conserved region in glutamate synthase CYD28_RS02645 PF00005 ABC transporter CYD28_RS02650 PF03649 Uncharacterised protein family (UPF0014) CYD28_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS02655 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS02660 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS02660 PF00072 Response regulator receiver domain CYD28_RS02670 PF07690 Major Facilitator Superfamily CYD28_RS02675 PF00135 Carboxylesterase family CYD28_RS02680 PF13520 Amino acid permease CYD28_RS02685 PF08818 Domain of unknown function (DU1801) CYD28_RS02690 PF00107 Zinc-binding dehydrogenase CYD28_RS02690 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS02695 PF00005 ABC transporter CYD28_RS02695 PF00571 CBS domain CYD28_RS02700 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS02705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CYD28_RS02710 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS02715 PF04172 LrgB-like family CYD28_RS02720 PF03788 LrgA family CYD28_RS02725 PF00072 Response regulator receiver domain CYD28_RS02725 PF04397 LytTr DNA-binding domain CYD28_RS02730 PF07694 5TMR of 5TMR-LYT CYD28_RS02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS02730 PF06580 Histidine kinase CYD28_RS02735 PF07690 Major Facilitator Superfamily CYD28_RS02740 PF02558 Ketopantoate reductase PanE/ApbA CYD28_RS02740 PF08546 Ketopantoate reductase PanE/ApbA C terminal CYD28_RS02745 PF07274 Protein of unknown function (DUF1440) CYD28_RS02755 PF02096 60Kd inner membrane protein CYD28_RS02760 PF00144 Beta-lactamase CYD28_RS02765 PF13520 Amino acid permease CYD28_RS02770 PF00999 Sodium/hydrogen exchanger family CYD28_RS02775 PF00324 Amino acid permease CYD28_RS02795 PF13649 Methyltransferase domain CYD28_RS02800 PF04405 Domain of Unknown function (DUF542) CYD28_RS02800 PF01814 Hemerythrin HHE cation binding domain CYD28_RS02805 PF07690 Major Facilitator Superfamily CYD28_RS02815 PF02595 Glycerate kinase family CYD28_RS02830 PF01545 Cation efflux family CYD28_RS02830 PF16916 Dimerisation domain of Zinc Transporter CYD28_RS02840 PF00300 Histidine phosphatase superfamily (branch 1) CYD28_RS02850 PF07690 Major Facilitator Superfamily CYD28_RS02855 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYD28_RS02860 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS02865 PF00005 ABC transporter CYD28_RS02870 PF02388 FemAB family CYD28_RS02885 PF01297 Zinc-uptake complex component A periplasmic CYD28_RS02885 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CYD28_RS02890 PF04264 YceI-like domain CYD28_RS02915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYD28_RS02915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYD28_RS02915 PF04324 BFD-like [2Fe-2S] binding domain CYD28_RS02915 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS02915 PF18267 Rubredoxin NAD+ reductase C-terminal domain CYD28_RS02920 PF00355 Rieske [2Fe-2S] domain CYD28_RS02925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYD28_RS02930 PF01568 Molydopterin dinucleotide binding domain CYD28_RS02930 PF14710 Respiratory nitrate reductase alpha N-terminal CYD28_RS02930 PF00384 Molybdopterin oxidoreductase CYD28_RS02935 PF13247 4Fe-4S dicluster domain CYD28_RS02935 PF14711 Respiratory nitrate reductase beta C-terminal CYD28_RS02940 PF02613 Nitrate reductase delta subunit CYD28_RS02945 PF02665 Nitrate reductase gamma subunit CYD28_RS02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS02955 PF07730 Histidine kinase CYD28_RS02960 PF00072 Response regulator receiver domain CYD28_RS02960 PF00196 Bacterial regulatory proteins, luxR family CYD28_RS02965 PF07690 Major Facilitator Superfamily CYD28_RS02970 PF00011 Hsp20/alpha crystallin family CYD28_RS02975 PF01047 MarR family CYD28_RS02985 PF00375 Sodium:dicarboxylate symporter family CYD28_RS02990 PF01610 Transposase CYD28_RS02990 PF13683 Integrase core domain CYD28_RS03000 PF16242 Pyridoxamine 5'-phosphate oxidase like CYD28_RS03005 PF12833 Helix-turn-helix domain CYD28_RS03015 PF00367 phosphotransferase system, EIIB CYD28_RS03015 PF02378 Phosphotransferase system, EIIC CYD28_RS03060 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS03065 PF00583 Acetyltransferase (GNAT) family CYD28_RS03070 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS03070 PF00107 Zinc-binding dehydrogenase CYD28_RS03075 PF09375 Imelysin CYD28_RS03080 PF04261 Dyp-type peroxidase family CYD28_RS03080 PF10518 TAT (twin-arginine translocation) pathway signal sequence CYD28_RS03085 PF03239 Iron permease FTR1 family CYD28_RS03090 PF00902 Sec-independent protein translocase protein (TatC) CYD28_RS03095 PF02416 mttA/Hcf106 family CYD28_RS03100 PF13673 Acetyltransferase (GNAT) domain CYD28_RS03105 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CYD28_RS03105 PF00535 Glycosyl transferase family 2 CYD28_RS03110 PF02652 L-lactate permease CYD28_RS03115 PF11380 Stealth protein CR2, conserved region 2 CYD28_RS03115 PF17103 Stealth protein CR4, conserved region 4 CYD28_RS03115 PF17101 Stealth protein CR1, conserved region 1 CYD28_RS03115 PF00534 Glycosyl transferases group 1 CYD28_RS03115 PF17102 Stealth protein CR3, conserved region 3 CYD28_RS03120 PF06039 Malate:quinone oxidoreductase (Mqo) CYD28_RS03130 PF04397 LytTr DNA-binding domain CYD28_RS03135 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS03135 PF00672 HAMP domain CYD28_RS03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS03140 PF00072 Response regulator receiver domain CYD28_RS03140 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS03145 PF02687 FtsX-like permease family CYD28_RS03150 PF00005 ABC transporter CYD28_RS03160 PF12802 MarR family CYD28_RS03170 PF07690 Major Facilitator Superfamily CYD28_RS03185 PF07690 Major Facilitator Superfamily CYD28_RS03210 PF01544 CorA-like Mg2+ transporter protein CYD28_RS03215 PF01070 FMN-dependent dehydrogenase CYD28_RS03220 PF03616 Sodium/glutamate symporter CYD28_RS03225 PF02245 Methylpurine-DNA glycosylase (MPG) CYD28_RS03230 PF01381 Helix-turn-helix CYD28_RS03240 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CYD28_RS03245 PF01263 Aldose 1-epimerase CYD28_RS03250 PF03475 3-alpha domain CYD28_RS03250 PF03473 MOSC domain CYD28_RS03255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CYD28_RS03260 PF01610 Transposase CYD28_RS03260 PF13683 Integrase core domain CYD28_RS03265 PF02517 CPBP intramembrane metalloprotease CYD28_RS03270 PF00491 Arginase family CYD28_RS03280 PF01546 Peptidase family M20/M25/M40 CYD28_RS03280 PF07687 Peptidase dimerisation domain CYD28_RS03290 PF01613 Flavin reductase like domain CYD28_RS03305 PF01380 SIS domain CYD28_RS03305 PF01418 Helix-turn-helix domain, rpiR family CYD28_RS03310 PF02378 Phosphotransferase system, EIIC CYD28_RS03310 PF00367 phosphotransferase system, EIIB CYD28_RS03320 PF13419 Haloacid dehalogenase-like hydrolase CYD28_RS03340 PF00324 Amino acid permease CYD28_RS03345 PF13683 Integrase core domain CYD28_RS03345 PF01610 Transposase CYD28_RS03350 PF01418 Helix-turn-helix domain, rpiR family CYD28_RS03350 PF01380 SIS domain CYD28_RS03355 PF00367 phosphotransferase system, EIIB CYD28_RS03355 PF02378 Phosphotransferase system, EIIC CYD28_RS03360 PF01380 SIS domain CYD28_RS03375 PF13280 WYL domain CYD28_RS03375 PF08279 HTH domain CYD28_RS03385 PF03816 Cell envelope-related transcriptional attenuator domain CYD28_RS03390 PF12838 4Fe-4S dicluster domain CYD28_RS03390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYD28_RS03390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CYD28_RS03390 PF01568 Molydopterin dinucleotide binding domain CYD28_RS03390 PF00384 Molybdopterin oxidoreductase CYD28_RS03395 PF07724 AAA domain (Cdc48 subfamily) CYD28_RS03395 PF10431 C-terminal, D2-small domain, of ClpB protein CYD28_RS03395 PF06689 ClpX C4-type zinc finger CYD28_RS03410 PF01494 FAD binding domain CYD28_RS03415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS03415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS03420 PF00893 Small Multidrug Resistance protein CYD28_RS03425 PF00893 Small Multidrug Resistance protein CYD28_RS03430 PF05257 CHAP domain CYD28_RS03440 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CYD28_RS03440 PF02558 Ketopantoate reductase PanE/ApbA CYD28_RS03445 PF03553 Na+/H+ antiporter family CYD28_RS03450 PF13683 Integrase core domain CYD28_RS03450 PF01610 Transposase CYD28_RS03455 PF05257 CHAP domain CYD28_RS03465 PF00872 Transposase, Mutator family CYD28_RS03490 PF02770 Acyl-CoA dehydrogenase, middle domain CYD28_RS03490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CYD28_RS03490 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CYD28_RS03495 PF01497 Periplasmic binding protein CYD28_RS03500 PF01156 Inosine-uridine preferring nucleoside hydrolase CYD28_RS03505 PF02632 BioY family CYD28_RS03515 PF02634 FdhD/NarQ family CYD28_RS03525 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS03530 PF00005 ABC transporter CYD28_RS03530 PF03459 TOBE domain CYD28_RS03535 PF00899 ThiF family CYD28_RS03540 PF00994 Probable molybdopterin binding domain CYD28_RS03545 PF01967 MoaC family CYD28_RS03550 PF00994 Probable molybdopterin binding domain CYD28_RS03550 PF03454 MoeA C-terminal region (domain IV) CYD28_RS03550 PF03453 MoeA N-terminal region (domain I and II) CYD28_RS03560 PF02391 MoaE protein CYD28_RS03565 PF02597 ThiS family CYD28_RS03570 PF12804 MobA-like NTP transferase domain CYD28_RS03575 PF04055 Radical SAM superfamily CYD28_RS03575 PF06463 Molybdenum Cofactor Synthesis C CYD28_RS03580 PF01047 MarR family CYD28_RS03590 PF01047 MarR family CYD28_RS03605 PF02388 FemAB family CYD28_RS03610 PF00873 AcrB/AcrD/AcrF family CYD28_RS03630 PF06800 Sugar transport protein CYD28_RS03640 PF01131 DNA topoisomerase CYD28_RS03640 PF01751 Toprim domain CYD28_RS03645 PF00860 Permease family CYD28_RS03655 PF00338 Ribosomal protein S10p/S20e CYD28_RS03660 PF00297 Ribosomal protein L3 CYD28_RS03665 PF00573 Ribosomal protein L4/L1 family CYD28_RS03670 PF00276 Ribosomal protein L23 CYD28_RS03675 PF00181 Ribosomal Proteins L2, RNA binding domain CYD28_RS03675 PF03947 Ribosomal Proteins L2, C-terminal domain CYD28_RS03680 PF00203 Ribosomal protein S19 CYD28_RS03685 PF00237 Ribosomal protein L22p/L17e CYD28_RS03690 PF07650 KH domain CYD28_RS03690 PF00189 Ribosomal protein S3, C-terminal domain CYD28_RS03695 PF00252 Ribosomal protein L16p/L10e CYD28_RS03700 PF00831 Ribosomal L29 protein CYD28_RS03705 PF00366 Ribosomal protein S17 CYD28_RS03710 PF00238 Ribosomal protein L14p/L23e CYD28_RS03715 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CYD28_RS03715 PF00467 KOW motif CYD28_RS03720 PF00673 ribosomal L5P family C-terminus CYD28_RS03720 PF00281 Ribosomal protein L5 CYD28_RS03725 PF00253 Ribosomal protein S14p/S29e CYD28_RS03730 PF00410 Ribosomal protein S8 CYD28_RS03735 PF00347 Ribosomal protein L6 CYD28_RS03740 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CYD28_RS03745 PF03719 Ribosomal protein S5, C-terminal domain CYD28_RS03745 PF00333 Ribosomal protein S5, N-terminal domain CYD28_RS03750 PF00327 Ribosomal protein L30p/L7e CYD28_RS03755 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CYD28_RS03760 PF00344 SecY translocase CYD28_RS03765 PF05191 Adenylate kinase, active site lid CYD28_RS03770 PF01176 Translation initiation factor 1A / IF-1 CYD28_RS03775 PF00444 Ribosomal protein L36 CYD28_RS03780 PF00416 Ribosomal protein S13/S18 CYD28_RS03785 PF00411 Ribosomal protein S11 CYD28_RS03790 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CYD28_RS03790 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CYD28_RS03790 PF01000 RNA polymerase Rpb3/RpoA insert domain CYD28_RS03795 PF01196 Ribosomal protein L17 CYD28_RS03800 PF00005 ABC transporter CYD28_RS03805 PF00005 ABC transporter CYD28_RS03810 PF02361 Cobalt transport protein CYD28_RS03815 PF01416 tRNA pseudouridine synthase CYD28_RS03820 PF00572 Ribosomal protein L13 CYD28_RS03825 PF00380 Ribosomal protein S9/S16 CYD28_RS03830 PF02146 Sir2 family CYD28_RS03835 PF08220 DeoR-like helix-turn-helix domain CYD28_RS03835 PF00455 DeoR C terminal sensor domain CYD28_RS03845 PF02502 Ribose/Galactose Isomerase CYD28_RS03850 PF02502 Ribose/Galactose Isomerase CYD28_RS03855 PF00294 pfkB family carbohydrate kinase CYD28_RS03860 PF01791 DeoC/LacD family aldolase CYD28_RS03865 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CYD28_RS03870 PF02378 Phosphotransferase system, EIIC CYD28_RS03870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYD28_RS03875 PF00232 Glycosyl hydrolase family 1 CYD28_RS03885 PF00296 Luciferase-like monooxygenase CYD28_RS03890 PF08240 Alcohol dehydrogenase GroES-like domain CYD28_RS03890 PF00107 Zinc-binding dehydrogenase CYD28_RS03895 PF02028 BCCT, betaine/carnitine/choline family transporter CYD28_RS03910 PF03780 Asp23 family, cell envelope-related function CYD28_RS03920 PF06276 Ferric iron reductase FhuF-like transporter CYD28_RS03920 PF04183 IucA / IucC family CYD28_RS03925 PF05977 Transmembrane secretion effector CYD28_RS03930 PF06276 Ferric iron reductase FhuF-like transporter CYD28_RS03930 PF04183 IucA / IucC family CYD28_RS03935 PF01168 Alanine racemase, N-terminal domain CYD28_RS03940 PF01497 Periplasmic binding protein CYD28_RS03945 PF01032 FecCD transport family CYD28_RS03950 PF01032 FecCD transport family CYD28_RS03955 PF07670 Nucleoside recognition CYD28_RS03960 PF03992 Antibiotic biosynthesis monooxygenase CYD28_RS03970 PF04307 LexA-binding, inner membrane-associated putative hydrolase CYD28_RS03975 PF01704 UTP--glucose-1-phosphate uridylyltransferase CYD28_RS03980 PF03006 Haemolysin-III related CYD28_RS03985 PF07690 Major Facilitator Superfamily CYD28_RS03990 PF17080 Multidrug Resistance efflux pump CYD28_RS03995 PF07690 Major Facilitator Superfamily CYD28_RS04000 PF10609 NUBPL iron-transfer P-loop NTPase CYD28_RS04005 PF13683 Integrase core domain CYD28_RS04005 PF01610 Transposase CYD28_RS04055 PF02457 DisA bacterial checkpoint controller nucleotide-binding CYD28_RS04065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYD28_RS04065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYD28_RS04065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYD28_RS04065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYD28_RS04070 PF01380 SIS domain CYD28_RS04075 PF00005 ABC transporter CYD28_RS04100 PF01545 Cation efflux family CYD28_RS04100 PF16916 Dimerisation domain of Zinc Transporter CYD28_RS04105 PF01022 Bacterial regulatory protein, arsR family CYD28_RS04110 PF13460 NAD(P)H-binding CYD28_RS04115 PF01238 Phosphomannose isomerase type I CYD28_RS04130 PF13683 Integrase core domain CYD28_RS04130 PF01610 Transposase CYD28_RS04140 PF00210 Ferritin-like domain CYD28_RS04145 PF01048 Phosphorylase superfamily CYD28_RS04150 PF01791 DeoC/LacD family aldolase CYD28_RS04155 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CYD28_RS04155 PF00591 Glycosyl transferase family, a/b domain CYD28_RS04155 PF02885 Glycosyl transferase family, helical bundle domain CYD28_RS04160 PF01676 Metalloenzyme superfamily CYD28_RS04170 PF02664 S-Ribosylhomocysteinase (LuxS) CYD28_RS04190 PF03630 Fumble CYD28_RS04200 PF05066 HB1, ASXL, restriction endonuclease HTH domain CYD28_RS04205 PF00117 Glutamine amidotransferase class-I CYD28_RS04205 PF06418 CTP synthase N-terminus CYD28_RS04215 PF01116 Fructose-bisphosphate aldolase class-II CYD28_RS04220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYD28_RS04230 PF00171 Aldehyde dehydrogenase family CYD28_RS04235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYD28_RS04235 PF07497 Rho termination factor, RNA-binding domain CYD28_RS04235 PF07498 Rho termination factor, N-terminal domain CYD28_RS04240 PF01197 Ribosomal protein L31 CYD28_RS04245 PF00265 Thymidine kinase CYD28_RS04250 PF03462 PCRF domain CYD28_RS04250 PF00472 RF-1 domain CYD28_RS04255 PF05175 Methyltransferase small domain CYD28_RS04255 PF17827 PrmC N-terminal domain CYD28_RS04260 PF03481 Putative GTP-binding controlling metal-binding CYD28_RS04260 PF01300 Telomere recombination CYD28_RS04265 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYD28_RS04270 PF04260 Protein of unknown function (DUF436) CYD28_RS04275 PF00464 Serine hydroxymethyltransferase CYD28_RS04285 PF02350 UDP-N-acetylglucosamine 2-epimerase CYD28_RS04295 PF00119 ATP synthase A chain CYD28_RS04300 PF00137 ATP synthase subunit C CYD28_RS04305 PF00430 ATP synthase B/B' CF(0) CYD28_RS04310 PF00213 ATP synthase delta (OSCP) subunit CYD28_RS04315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYD28_RS04315 PF00306 ATP synthase alpha/beta chain, C terminal domain CYD28_RS04315 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYD28_RS04320 PF00231 ATP synthase CYD28_RS04325 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYD28_RS04325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYD28_RS04330 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CYD28_RS04330 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CYD28_RS04340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYD28_RS04345 PF07977 FabA-like domain CYD28_RS04355 PF00436 Single-strand binding protein family CYD28_RS04360 PF06737 Transglycosylase-like domain CYD28_RS04365 PF03070 TENA/THI-4/PQQC family CYD28_RS04370 PF08543 Phosphomethylpyrimidine kinase CYD28_RS04375 PF02110 Hydroxyethylthiazole kinase family CYD28_RS04380 PF02581 Thiamine monophosphate synthase CYD28_RS04385 PF02096 60Kd inner membrane protein CYD28_RS04390 PF01610 Transposase CYD28_RS04390 PF13683 Integrase core domain CYD28_RS04395 PF01966 HD domain CYD28_RS04400 PF13091 PLD-like domain CYD28_RS04400 PF13396 Phospholipase_D-nuclease N-terminal CYD28_RS04405 PF02583 Metal-sensitive transcriptional repressor CYD28_RS04425 PF01098 Cell cycle protein CYD28_RS04430 PF07478 D-ala D-ala ligase C-terminus CYD28_RS04430 PF01820 D-ala D-ala ligase N-terminus CYD28_RS04435 PF08245 Mur ligase middle domain CYD28_RS04435 PF01225 Mur ligase family, catalytic domain CYD28_RS04435 PF02875 Mur ligase family, glutamate ligase domain CYD28_RS04440 PF00271 Helicase conserved C-terminal domain CYD28_RS04440 PF00270 DEAD/DEAH box helicase CYD28_RS04450 PF03703 Bacterial PH domain CYD28_RS04460 PF01648 4'-phosphopantetheinyl transferase superfamily CYD28_RS04465 PF01168 Alanine racemase, N-terminal domain CYD28_RS04465 PF00842 Alanine racemase, C-terminal domain CYD28_RS04475 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CYD28_RS04480 PF07228 Stage II sporulation protein E (SpoIIE) CYD28_RS04480 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CYD28_RS04485 PF01740 STAS domain CYD28_RS04490 PF13581 Histidine kinase-like ATPase domain CYD28_RS04495 PF04539 Sigma-70 region 3 CYD28_RS04495 PF04542 Sigma-70 region 2 CYD28_RS04495 PF04545 Sigma-70, region 4 CYD28_RS04500 PF00575 S1 RNA binding domain CYD28_RS04500 PF17674 HHH domain CYD28_RS04500 PF09371 Tex-like protein N-terminal domain CYD28_RS04500 PF16921 Tex protein YqgF-like domain CYD28_RS04505 PF17283 SprT-like zinc ribbon domain CYD28_RS04505 PF10263 SprT-like family CYD28_RS04540 PF00585 C-terminal regulatory domain of Threonine dehydratase CYD28_RS04540 PF00291 Pyridoxal-phosphate dependent enzyme CYD28_RS04545 PF00694 Aconitase C-terminal domain CYD28_RS04550 PF00330 Aconitase family (aconitate hydratase) CYD28_RS04555 PF00180 Isocitrate/isopropylmalate dehydrogenase CYD28_RS04560 PF00682 HMGL-like CYD28_RS04560 PF08502 LeuA allosteric (dimerisation) domain CYD28_RS04565 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CYD28_RS04565 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CYD28_RS04570 PF10369 Small subunit of acetolactate synthase CYD28_RS04575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS04575 PF00205 Thiamine pyrophosphate enzyme, central domain CYD28_RS04575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYD28_RS04580 PF00920 Dehydratase family CYD28_RS04585 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CYD28_RS04590 PF00814 Glycoprotease family CYD28_RS04595 PF00583 Acetyltransferase (GNAT) family CYD28_RS04600 PF00814 Glycoprotease family CYD28_RS04605 PF16326 ABC transporter C-terminal domain CYD28_RS04605 PF00005 ABC transporter CYD28_RS04605 PF12848 ABC transporter CYD28_RS04610 PF02629 CoA binding domain CYD28_RS04610 PF06971 Putative DNA-binding protein N-terminus CYD28_RS04615 PF04143 Sulphur transport CYD28_RS04620 PF01206 Sulfurtransferase TusA CYD28_RS04625 PF00909 Ammonium Transporter Family CYD28_RS04630 PF00356 Bacterial regulatory proteins, lacI family CYD28_RS04630 PF13407 Periplasmic binding protein domain CYD28_RS04635 PF00251 Glycosyl hydrolases family 32 N-terminal domain CYD28_RS04635 PF08244 Glycosyl hydrolases family 32 C terminal CYD28_RS04640 PF00294 pfkB family carbohydrate kinase CYD28_RS04645 PF04397 LytTr DNA-binding domain CYD28_RS04645 PF00072 Response regulator receiver domain CYD28_RS04660 PF04647 Accessory gene regulator B CYD28_RS04665 PF00795 Carbon-nitrogen hydrolase CYD28_RS04680 PF02517 CPBP intramembrane metalloprotease CYD28_RS04685 PF00166 Chaperonin 10 Kd subunit CYD28_RS04690 PF00118 TCP-1/cpn60 chaperonin family CYD28_RS04695 PF14659 Phage integrase, N-terminal SAM-like domain CYD28_RS04695 PF00589 Phage integrase family CYD28_RS04755 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS04760 PF00005 ABC transporter CYD28_RS04770 PF00005 ABC transporter CYD28_RS04810 PF10282 Lactonase, 7-bladed beta-propeller CYD28_RS04815 PF00171 Aldehyde dehydrogenase family CYD28_RS04820 PF02833 DHHA2 domain CYD28_RS04820 PF01368 DHH family CYD28_RS04825 PF00857 Isochorismatase family CYD28_RS04835 PF01817 Chorismate mutase type II CYD28_RS04835 PF00800 Prephenate dehydratase CYD28_RS04840 PF02898 Nitric oxide synthase, oxygenase domain CYD28_RS04845 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CYD28_RS04845 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CYD28_RS04845 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CYD28_RS04850 PF02540 NAD synthase CYD28_RS04855 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CYD28_RS04860 PF14044 NETI protein CYD28_RS04865 PF10397 Adenylosuccinate lyase C-terminus CYD28_RS04865 PF00206 Lyase CYD28_RS04870 PF01371 Trp repressor protein CYD28_RS04875 PF01884 PcrB family CYD28_RS04880 PF13361 UvrD-like helicase C-terminal domain CYD28_RS04880 PF00580 UvrD/REP helicase N-terminal domain CYD28_RS04885 PF01653 NAD-dependent DNA ligase adenylation domain CYD28_RS04885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CYD28_RS04885 PF12826 Helix-hairpin-helix motif CYD28_RS04885 PF00533 BRCA1 C Terminus (BRCT) domain CYD28_RS04885 PF03120 NAD-dependent DNA ligase OB-fold domain CYD28_RS04890 PF07537 CamS sex pheromone cAM373 precursor CYD28_RS04895 PF00474 Sodium:solute symporter family CYD28_RS04900 PF02686 Glu-tRNAGln amidotransferase C subunit CYD28_RS04905 PF01425 Amidase CYD28_RS04910 PF02637 GatB domain CYD28_RS04910 PF02934 GatB/GatE catalytic domain CYD28_RS04915 PF00781 Diacylglycerol kinase catalytic domain CYD28_RS04920 PF05958 tRNA (Uracil-5-)-methyltransferase CYD28_RS04930 PF00817 impB/mucB/samB family CYD28_RS04930 PF11799 impB/mucB/samB family C-terminal domain CYD28_RS04940 PF00210 Ferritin-like domain CYD28_RS04945 PF08353 Domain of unknown function (DUF1727) CYD28_RS04945 PF08245 Mur ligase middle domain CYD28_RS04950 PF07685 CobB/CobQ-like glutamine amidotransferase domain CYD28_RS04955 PF06081 Aromatic acid exporter family member 1 CYD28_RS04960 PF00557 Metallopeptidase family M24 CYD28_RS04965 PF00106 short chain dehydrogenase CYD28_RS04985 PF07730 Histidine kinase CYD28_RS04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS04990 PF00072 Response regulator receiver domain CYD28_RS04990 PF00196 Bacterial regulatory proteins, luxR family CYD28_RS04995 PF03631 Virulence factor BrkB CYD28_RS05005 PF01451 Low molecular weight phosphotyrosine protein phosphatase CYD28_RS05010 PF06569 Protein of unknown function (DUF1128) CYD28_RS05015 PF02073 Thermophilic metalloprotease (M29) CYD28_RS05020 PF03061 Thioesterase superfamily CYD28_RS05030 PF04055 Radical SAM superfamily CYD28_RS05030 PF08756 YfkB-like domain CYD28_RS05040 PF01965 DJ-1/PfpI family CYD28_RS05045 PF00912 Transglycosylase CYD28_RS05050 PF02631 RecX family CYD28_RS05060 PF00005 ABC transporter CYD28_RS05060 PF01476 LysM domain CYD28_RS05070 PF04307 LexA-binding, inner membrane-associated putative hydrolase CYD28_RS05075 PF00730 HhH-GPD superfamily base excision DNA repair protein CYD28_RS05075 PF14815 NUDIX domain CYD28_RS05080 PF04167 Protein of unknown function (DUF402) CYD28_RS05085 PF00664 ABC transporter transmembrane region CYD28_RS05085 PF00005 ABC transporter CYD28_RS05090 PF06081 Aromatic acid exporter family member 1 CYD28_RS05095 PF00202 Aminotransferase class-III CYD28_RS05100 PF00578 AhpC/TSA family CYD28_RS05105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS05105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS05110 PF01475 Ferric uptake regulator family CYD28_RS05270 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS05275 PF00005 ABC transporter CYD28_RS05280 PF08331 Domain of unknown function (DUF1730) CYD28_RS05285 PF00588 SpoU rRNA Methylase family CYD28_RS05290 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYD28_RS05305 PF00206 Lyase CYD28_RS05305 PF10415 Fumarase C C-terminus CYD28_RS05310 PF01479 S4 domain CYD28_RS05310 PF00849 RNA pseudouridylate synthase CYD28_RS05315 PF07730 Histidine kinase CYD28_RS05315 PF13185 GAF domain CYD28_RS05320 PF00196 Bacterial regulatory proteins, luxR family CYD28_RS05320 PF00072 Response regulator receiver domain CYD28_RS05330 PF04286 Protein of unknown function (DUF445) CYD28_RS05335 PF06133 Control of competence regulator ComK, YlbF/YmcA CYD28_RS05345 PF13514 AAA domain CYD28_RS05350 PF01966 HD domain CYD28_RS05350 PF01336 OB-fold nucleic acid binding domain CYD28_RS05355 PF00639 PPIC-type PPIASE domain CYD28_RS05370 PF01230 HIT domain CYD28_RS05375 PF00005 ABC transporter CYD28_RS05380 PF05975 Bacterial ABC transporter protein EcsB CYD28_RS05400 PF01208 Uroporphyrinogen decarboxylase (URO-D) CYD28_RS05405 PF00762 Ferrochelatase CYD28_RS05410 PF01593 Flavin containing amine oxidoreductase CYD28_RS05420 PF01610 Transposase CYD28_RS05420 PF13683 Integrase core domain CYD28_RS05465 PF13193 AMP-binding enzyme C-terminal domain CYD28_RS05465 PF00501 AMP-binding enzyme CYD28_RS05475 PF01809 Putative membrane protein insertion efficiency factor CYD28_RS05480 PF00293 NUDIX domain CYD28_RS05485 PF00326 Prolyl oligopeptidase family CYD28_RS05490 PF01293 Phosphoenolpyruvate carboxykinase CYD28_RS05495 PF02773 S-adenosylmethionine synthetase, C-terminal domain CYD28_RS05495 PF02772 S-adenosylmethionine synthetase, central domain CYD28_RS05495 PF00438 S-adenosylmethionine synthetase, N-terminal domain CYD28_RS05505 PF00248 Aldo/keto reductase family CYD28_RS05510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CYD28_RS05515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CYD28_RS05525 PF00923 Transaldolase/Fructose-6-phosphate aldolase CYD28_RS05540 PF00196 Bacterial regulatory proteins, luxR family CYD28_RS05540 PF04542 Sigma-70 region 2 CYD28_RS05550 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CYD28_RS05550 PF13457 GW (Gly-Tryp) dipeptide domain CYD28_RS05555 PF01610 Transposase CYD28_RS05555 PF13683 Integrase core domain CYD28_RS05565 PF01872 RibD C-terminal domain CYD28_RS05565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYD28_RS05570 PF00677 Lumazine binding domain CYD28_RS05575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CYD28_RS05575 PF00925 GTP cyclohydrolase II CYD28_RS05580 PF00885 6,7-dimethyl-8-ribityllumazine synthase CYD28_RS05585 PF01619 Proline dehydrogenase CYD28_RS05590 PF12146 Serine aminopeptidase, S33 CYD28_RS05600 PF00872 Transposase, Mutator family CYD28_RS05605 PF01047 MarR family CYD28_RS05610 PF06962 Putative rRNA methylase CYD28_RS05615 PF16199 Radical_SAM C-terminal domain CYD28_RS05615 PF04055 Radical SAM superfamily CYD28_RS05620 PF07690 Major Facilitator Superfamily CYD28_RS05625 PF09334 tRNA synthetases class I (M) CYD28_RS05625 PF13603 Leucyl-tRNA synthetase, Domain 2 CYD28_RS05625 PF08264 Anticodon-binding domain of tRNA CYD28_RS05625 PF00133 tRNA synthetases class I (I, L, M and V) CYD28_RS05635 PF01468 GA module CYD28_RS05635 PF04650 YSIRK type signal peptide CYD28_RS05635 PF07564 Domain of Unknown Function (DUF1542) CYD28_RS05650 PF01943 Polysaccharide biosynthesis protein CYD28_RS05650 PF14667 Polysaccharide biosynthesis C-terminal domain CYD28_RS05655 PF01479 S4 domain CYD28_RS05655 PF00849 RNA pseudouridylate synthase CYD28_RS05665 PF01546 Peptidase family M20/M25/M40 CYD28_RS05670 PF01063 Amino-transferase class IV CYD28_RS05675 PF01636 Phosphotransferase enzyme family CYD28_RS05680 PF02390 Putative methyltransferase CYD28_RS05685 PF01610 Transposase CYD28_RS05685 PF13683 Integrase core domain CYD28_RS05690 PF00753 Metallo-beta-lactamase superfamily CYD28_RS05700 PF05343 M42 glutamyl aminopeptidase CYD28_RS05705 PF00085 Thioredoxin CYD28_RS05710 PF07285 Protein of unknown function (DUF1444) CYD28_RS05715 PF14794 Domain of unknown function (DUF4479) CYD28_RS05715 PF01588 Putative tRNA binding domain CYD28_RS05720 PF09397 Ftsk gamma domain CYD28_RS05720 PF17854 FtsK alpha domain CYD28_RS05720 PF01580 FtsK/SpoIIIE family CYD28_RS05725 PF08245 Mur ligase middle domain CYD28_RS05725 PF02875 Mur ligase family, glutamate ligase domain CYD28_RS05725 PF01225 Mur ligase family, catalytic domain CYD28_RS05730 PF06103 Bacterial protein of unknown function (DUF948) CYD28_RS05740 PF00793 DAHP synthetase I family CYD28_RS05740 PF01817 Chorismate mutase type II CYD28_RS05745 PF00356 Bacterial regulatory proteins, lacI family CYD28_RS05750 PF00850 Histone deacetylase domain CYD28_RS05755 PF00583 Acetyltransferase (GNAT) family CYD28_RS05760 PF13193 AMP-binding enzyme C-terminal domain CYD28_RS05760 PF00501 AMP-binding enzyme CYD28_RS05775 PF00186 Dihydrofolate reductase CYD28_RS05780 PF01268 Formate--tetrahydrofolate ligase CYD28_RS05785 PF00912 Transglycosylase CYD28_RS05785 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS05790 PF01479 S4 domain CYD28_RS05790 PF00579 tRNA synthetases class I (W and Y) CYD28_RS05800 PF07690 Major Facilitator Superfamily CYD28_RS05805 PF13180 PDZ domain CYD28_RS05810 PF01553 Acyltransferase CYD28_RS05815 PF00367 phosphotransferase system, EIIB CYD28_RS05815 PF02378 Phosphotransferase system, EIIC CYD28_RS05825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS05825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS05825 PF01842 ACT domain CYD28_RS05830 PF00266 Aminotransferase class-V CYD28_RS05835 PF02566 OsmC-like protein CYD28_RS05840 PF03009 Glycerophosphoryl diester phosphodiesterase family CYD28_RS05845 PF01479 S4 domain CYD28_RS05845 PF00163 Ribosomal protein S4/S9 N-terminal domain CYD28_RS05855 PF13185 GAF domain CYD28_RS05860 PF06160 Septation ring formation regulator, EzrA CYD28_RS05865 PF00266 Aminotransferase class-V CYD28_RS05870 PF02568 Thiamine biosynthesis protein (ThiI) CYD28_RS05870 PF02926 THUMP domain CYD28_RS05875 PF01925 Sulfite exporter TauE/SafE CYD28_RS05880 PF08534 Redoxin CYD28_RS05885 PF02384 N-6 DNA Methylase CYD28_RS05890 PF00871 Acetokinase family CYD28_RS05895 PF00582 Universal stress protein family CYD28_RS05900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CYD28_RS05900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CYD28_RS05905 PF00557 Metallopeptidase family M24 CYD28_RS05905 PF01321 Creatinase/Prolidase N-terminal domain CYD28_RS05920 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS05920 PF03061 Thioesterase superfamily CYD28_RS05920 PF07085 DRTGG domain CYD28_RS05920 PF00571 CBS domain CYD28_RS05925 PF02272 DHHA1 domain CYD28_RS05925 PF01368 DHH family CYD28_RS05930 PF01336 OB-fold nucleic acid binding domain CYD28_RS05930 PF14579 Helix-hairpin-helix motif CYD28_RS05930 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYD28_RS05930 PF02811 PHP domain CYD28_RS05930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYD28_RS05935 PF00390 Malic enzyme, N-terminal domain CYD28_RS05935 PF03949 Malic enzyme, NAD binding domain CYD28_RS05940 PF17848 Acetyl-coA carboxylase zinc finger domain CYD28_RS05940 PF01039 Carboxyl transferase domain CYD28_RS05945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CYD28_RS05950 PF00365 Phosphofructokinase CYD28_RS05955 PF00391 PEP-utilising enzyme, mobile domain CYD28_RS05955 PF02887 Pyruvate kinase, alpha/beta domain CYD28_RS05955 PF00224 Pyruvate kinase, barrel domain CYD28_RS05960 PF01207 Dihydrouridine synthase (Dus) CYD28_RS05965 PF00324 Amino acid permease CYD28_RS05970 PF00285 Citrate synthase, C-terminal domain CYD28_RS05975 PF00180 Isocitrate/isopropylmalate dehydrogenase CYD28_RS05980 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS05980 PF00072 Response regulator receiver domain CYD28_RS05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS05985 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS05985 PF00989 PAS fold CYD28_RS05985 PF16736 Single Cache-like CYD28_RS05990 PF00476 DNA polymerase family A CYD28_RS05990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CYD28_RS05990 PF01367 5'-3' exonuclease, C-terminal SAM fold CYD28_RS05995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CYD28_RS05995 PF06827 Zinc finger found in FPG and IleRS CYD28_RS05995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CYD28_RS06000 PF01121 Dephospho-CoA kinase CYD28_RS06005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYD28_RS06005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYD28_RS06010 PF03477 ATP cone domain CYD28_RS06020 PF01695 IstB-like ATP binding protein CYD28_RS06020 PF07319 Primosomal protein DnaI N-terminus CYD28_RS06025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYD28_RS06025 PF03129 Anticodon binding domain CYD28_RS06025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS06025 PF02824 TGS domain CYD28_RS06030 PF00324 Amino acid permease CYD28_RS06035 PF05198 Translation initiation factor IF-3, N-terminal domain CYD28_RS06035 PF00707 Translation initiation factor IF-3, C-terminal domain CYD28_RS06040 PF01632 Ribosomal protein L35 CYD28_RS06045 PF00453 Ribosomal protein L20 CYD28_RS06060 PF05698 Bacterial trigger factor protein (TF) C-terminus CYD28_RS06060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYD28_RS06060 PF05697 Bacterial trigger factor protein (TF) CYD28_RS06065 PF06689 ClpX C4-type zinc finger CYD28_RS06065 PF10431 C-terminal, D2-small domain, of ClpB protein CYD28_RS06065 PF07724 AAA domain (Cdc48 subfamily) CYD28_RS06070 PF01610 Transposase CYD28_RS06070 PF13683 Integrase core domain CYD28_RS06075 PF01926 50S ribosome-binding GTPase CYD28_RS06080 PF01488 Shikimate / quinate 5-dehydrogenase CYD28_RS06080 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CYD28_RS06080 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CYD28_RS06085 PF01578 Cytochrome C assembly protein CYD28_RS06090 PF03900 Porphobilinogen deaminase, C-terminal domain CYD28_RS06090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CYD28_RS06100 PF00490 Delta-aminolevulinic acid dehydratase CYD28_RS06105 PF00202 Aminotransferase class-III CYD28_RS06115 PF03352 Methyladenine glycosylase CYD28_RS06120 PF00133 tRNA synthetases class I (I, L, M and V) CYD28_RS06120 PF10458 Valyl tRNA synthetase tRNA binding arm CYD28_RS06120 PF08264 Anticodon-binding domain of tRNA CYD28_RS06125 PF08245 Mur ligase middle domain CYD28_RS06125 PF02875 Mur ligase family, glutamate ligase domain CYD28_RS06135 PF04002 RadC-like JAB domain CYD28_RS06160 PF04085 rod shape-determining protein MreC CYD28_RS06170 PF00829 Ribosomal prokaryotic L21 protein CYD28_RS06175 PF04327 Cysteine protease Prp CYD28_RS06180 PF01016 Ribosomal L27 protein CYD28_RS06185 PF01018 GTP1/OBG CYD28_RS06185 PF01926 50S ribosome-binding GTPase CYD28_RS06185 PF09269 Domain of unknown function (DUF1967) CYD28_RS06195 PF01330 RuvA N terminal domain CYD28_RS06195 PF07499 RuvA, C-terminal domain CYD28_RS06200 PF17864 RuvB AAA lid domain CYD28_RS06200 PF05491 RuvB C-terminal winged helix domain CYD28_RS06200 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYD28_RS06205 PF02547 Queuosine biosynthesis protein CYD28_RS06210 PF01702 Queuine tRNA-ribosyltransferase CYD28_RS06215 PF02699 Preprotein translocase subunit CYD28_RS06220 PF02355 Protein export membrane protein CYD28_RS06220 PF07549 SecD/SecF GG Motif CYD28_RS06225 PF01368 DHH family CYD28_RS06225 PF17768 RecJ OB domain CYD28_RS06225 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CYD28_RS06225 PF02272 DHHA1 domain CYD28_RS06230 PF00156 Phosphoribosyl transferase domain CYD28_RS06235 PF04607 Region found in RelA / SpoT proteins CYD28_RS06235 PF13291 ACT domain CYD28_RS06235 PF02824 TGS domain CYD28_RS06240 PF02580 D-Tyr-tRNA(Tyr) deacylase CYD28_RS06245 PF08239 Bacterial SH3 domain CYD28_RS06245 PF01520 N-acetylmuramoyl-L-alanine amidase CYD28_RS06250 PF03129 Anticodon binding domain CYD28_RS06250 PF13393 Histidyl-tRNA synthetase CYD28_RS06255 PF01336 OB-fold nucleic acid binding domain CYD28_RS06255 PF00152 tRNA synthetases class II (D, K and N) CYD28_RS06255 PF02938 GAD domain CYD28_RS06265 PF00899 ThiF family CYD28_RS06270 PF16193 AAA C-terminal domain CYD28_RS06270 PF12002 MgsA AAA+ ATPase C terminal CYD28_RS06270 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYD28_RS06275 PF02082 Transcriptional regulator CYD28_RS06280 PF00296 Luciferase-like monooxygenase CYD28_RS06285 PF00266 Aminotransferase class-V CYD28_RS06300 PF14490 Helix-hairpin-helix containing domain CYD28_RS06300 PF13538 UvrD-like helicase C-terminal domain CYD28_RS06300 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CYD28_RS06305 PF02272 DHHA1 domain CYD28_RS06305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS06305 PF01411 tRNA synthetases class II (A) CYD28_RS06310 PF06135 IreB regulatory phosphoprotein CYD28_RS06315 PF03652 Holliday junction resolvase CYD28_RS06320 PF06949 Protein of unknown function (DUF1292) CYD28_RS06330 PF01136 Peptidase family U32 CYD28_RS06335 PF01136 Peptidase family U32 CYD28_RS06335 PF16325 Peptidase family U32 C-terminal domain CYD28_RS06340 PF00485 Phosphoribulokinase / Uridine kinase family CYD28_RS06345 PF03449 Transcription elongation factor, N-terminal CYD28_RS06345 PF01272 Transcription elongation factor, GreA/GreB, C-term CYD28_RS06350 PF02682 Carboxyltransferase domain, subdomain C and D CYD28_RS06355 PF02626 Carboxyltransferase domain, subdomain A and B CYD28_RS06360 PF00364 Biotin-requiring enzyme CYD28_RS06365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYD28_RS06365 PF00289 Biotin carboxylase, N-terminal domain CYD28_RS06365 PF02785 Biotin carboxylase C-terminal domain CYD28_RS06370 PF03746 LamB/YcsF family CYD28_RS06375 PF01566 Natural resistance-associated macrophage protein CYD28_RS06380 PF01048 Phosphorylase superfamily CYD28_RS06390 PF01926 50S ribosome-binding GTPase CYD28_RS06395 PF01488 Shikimate / quinate 5-dehydrogenase CYD28_RS06395 PF08501 Shikimate dehydrogenase substrate binding domain CYD28_RS06395 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CYD28_RS06400 PF01985 CRS1 / YhbY (CRM) domain CYD28_RS06405 PF01467 Cytidylyltransferase-like CYD28_RS06410 PF01966 HD domain CYD28_RS06420 PF13649 Methyltransferase domain CYD28_RS06425 PF10531 SLBB domain CYD28_RS06430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYD28_RS06435 PF13567 Domain of unknown function (DUF4131) CYD28_RS06435 PF00753 Metallo-beta-lactamase superfamily CYD28_RS06435 PF03772 Competence protein CYD28_RS06440 PF06144 DNA polymerase III, delta subunit CYD28_RS06450 PF01649 Ribosomal protein S20 CYD28_RS06455 PF03144 Elongation factor Tu domain 2 CYD28_RS06455 PF06421 GTP-binding protein LepA C-terminus CYD28_RS06455 PF00679 Elongation factor G C-terminus CYD28_RS06455 PF00009 Elongation factor Tu GTP binding domain CYD28_RS06460 PF06969 HemN C-terminal domain CYD28_RS06460 PF04055 Radical SAM superfamily CYD28_RS06465 PF01628 HrcA protein C terminal domain CYD28_RS06470 PF01025 GrpE CYD28_RS06475 PF00012 Hsp70 protein CYD28_RS06480 PF01556 DnaJ C terminal domain CYD28_RS06480 PF00226 DnaJ domain CYD28_RS06480 PF00684 DnaJ central domain CYD28_RS06490 PF04452 RNA methyltransferase CYD28_RS06495 PF00919 Uncharacterized protein family UPF0004 CYD28_RS06495 PF04055 Radical SAM superfamily CYD28_RS06495 PF01938 TRAM domain CYD28_RS06500 PF01165 Ribosomal protein S21 CYD28_RS06505 PF01957 NfeD-like C-terminal, partner-binding CYD28_RS06505 PF01972 Serine dehydrogenase proteinase CYD28_RS06510 PF12127 SigmaW regulon antibacterial CYD28_RS06520 PF02562 PhoH-like protein CYD28_RS06525 PF02130 Uncharacterized protein family UPF0054 CYD28_RS06530 PF01219 Prokaryotic diacylglycerol kinase CYD28_RS06535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYD28_RS06540 PF01926 50S ribosome-binding GTPase CYD28_RS06540 PF07650 KH domain CYD28_RS06545 PF02565 Recombination protein O C terminal CYD28_RS06545 PF11967 Recombination protein O N terminal CYD28_RS06550 PF03129 Anticodon binding domain CYD28_RS06550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYD28_RS06555 PF00571 CBS domain CYD28_RS06555 PF08279 HTH domain CYD28_RS06560 PF03618 Kinase/pyrophosphorylase CYD28_RS06565 PF01807 CHC2 zinc finger CYD28_RS06565 PF08275 DNA primase catalytic core, N-terminal domain CYD28_RS06565 PF00772 DnaB-like helicase N terminal domain CYD28_RS06570 PF03979 Sigma-70 factor, region 1.1 CYD28_RS06570 PF00140 Sigma-70 factor, region 1.2 CYD28_RS06570 PF04542 Sigma-70 region 2 CYD28_RS06570 PF04539 Sigma-70 region 3 CYD28_RS06570 PF04545 Sigma-70, region 4 CYD28_RS06575 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CYD28_RS06580 PF01784 NIF3 (NGG1p interacting factor 3) CYD28_RS06585 PF00271 Helicase conserved C-terminal domain CYD28_RS06585 PF00270 DEAD/DEAH box helicase CYD28_RS06590 PF01261 Xylose isomerase-like TIM barrel CYD28_RS06595 PF00005 ABC transporter CYD28_RS06600 PF00950 ABC 3 transport family CYD28_RS06605 PF01475 Ferric uptake regulator family CYD28_RS06610 PF00872 Transposase, Mutator family CYD28_RS06615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CYD28_RS06615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CYD28_RS06620 PF03717 Penicillin-binding Protein dimerisation domain CYD28_RS06620 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS06625 PF00471 Ribosomal protein L33 CYD28_RS06630 PF01812 5-formyltetrahydrofolate cyclo-ligase family CYD28_RS06640 PF06014 Bacterial protein of unknown function (DUF910) CYD28_RS06645 PF00480 ROK family CYD28_RS06650 PF01910 Thiamine-binding protein CYD28_RS06655 PF00753 Metallo-beta-lactamase superfamily CYD28_RS06660 PF00437 Type II/IV secretion system protein CYD28_RS06665 PF00482 Type II secretion system (T2SS), protein F CYD28_RS06670 PF07963 Prokaryotic N-terminal methylation motif CYD28_RS06695 PF01202 Shikimate kinase CYD28_RS06700 PF08669 Glycine cleavage T-protein C-terminal barrel domain CYD28_RS06700 PF01571 Aminomethyltransferase folate-binding domain CYD28_RS06705 PF02347 Glycine cleavage system P-protein CYD28_RS06710 PF00266 Aminotransferase class-V CYD28_RS06715 PF00581 Rhodanese-like domain CYD28_RS06720 PF03099 Biotin/lipoate A/B protein ligase family CYD28_RS06735 PF01321 Creatinase/Prolidase N-terminal domain CYD28_RS06735 PF00557 Metallopeptidase family M24 CYD28_RS06740 PF01132 Elongation factor P (EF-P) OB domain CYD28_RS06740 PF08207 Elongation factor P (EF-P) KOW-like domain CYD28_RS06740 PF09285 Elongation factor P, C-terminal CYD28_RS06745 PF00364 Biotin-requiring enzyme CYD28_RS06750 PF00289 Biotin carboxylase, N-terminal domain CYD28_RS06750 PF02785 Biotin carboxylase C-terminal domain CYD28_RS06750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYD28_RS06755 PF03780 Asp23 family, cell envelope-related function CYD28_RS06760 PF01029 NusB family CYD28_RS06765 PF13742 OB-fold nucleic acid binding domain CYD28_RS06765 PF02601 Exonuclease VII, large subunit CYD28_RS06770 PF02609 Exonuclease VII small subunit CYD28_RS06775 PF00348 Polyprenyl synthetase CYD28_RS06780 PF01316 Arginine repressor, DNA binding domain CYD28_RS06780 PF02863 Arginine repressor, C-terminal domain CYD28_RS06785 PF13476 AAA domain CYD28_RS06790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS06790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS06795 PF00676 Dehydrogenase E1 component CYD28_RS06800 PF02779 Transketolase, pyrimidine binding domain CYD28_RS06800 PF02780 Transketolase, C-terminal domain CYD28_RS06805 PF02817 e3 binding domain CYD28_RS06805 PF00364 Biotin-requiring enzyme CYD28_RS06805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYD28_RS06810 PF06491 Disulphide isomerase CYD28_RS06815 PF11728 Putative aromatic acid exporter C-terminal domain CYD28_RS06815 PF06081 Aromatic acid exporter family member 1 CYD28_RS06825 PF01546 Peptidase family M20/M25/M40 CYD28_RS06825 PF07687 Peptidase dimerisation domain CYD28_RS06830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CYD28_RS06830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CYD28_RS06835 PF00356 Bacterial regulatory proteins, lacI family CYD28_RS06840 PF00128 Alpha amylase, catalytic domain CYD28_RS06840 PF16657 Maltogenic Amylase, C-terminal domain CYD28_RS06850 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CYD28_RS06850 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CYD28_RS06855 PF12706 Beta-lactamase superfamily domain CYD28_RS06860 PF03807 NADP oxidoreductase coenzyme F420-dependent CYD28_RS06860 PF14748 Pyrroline-5-carboxylate reductase dimerisation CYD28_RS06865 PF00106 short chain dehydrogenase CYD28_RS06875 PF00248 Aldo/keto reductase family CYD28_RS06880 PF00293 NUDIX domain CYD28_RS06885 PF01475 Ferric uptake regulator family CYD28_RS06890 PF02899 Phage integrase, N-terminal SAM-like domain CYD28_RS06890 PF00589 Phage integrase family CYD28_RS06900 PF02616 Segregation and condensation protein ScpA CYD28_RS06905 PF04079 Segregation and condensation complex subunit ScpB CYD28_RS06915 PF00072 Response regulator receiver domain CYD28_RS06915 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS06920 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS06920 PF18698 Histidine kinase sensor domain CYD28_RS06920 PF00672 HAMP domain CYD28_RS06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS06925 PF12822 ECF transporter, substrate-specific component CYD28_RS06940 PF00270 DEAD/DEAH box helicase CYD28_RS06940 PF00271 Helicase conserved C-terminal domain CYD28_RS06945 PF01476 LysM domain CYD28_RS06960 PF17763 Glutaminase/Asparaginase C-terminal domain CYD28_RS06960 PF00710 Asparaginase, N-terminal CYD28_RS06965 PF02224 Cytidylate kinase CYD28_RS06970 PF00575 S1 RNA binding domain CYD28_RS06975 PF01926 50S ribosome-binding GTPase CYD28_RS06975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYD28_RS06980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CYD28_RS06980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CYD28_RS06985 PF00216 Bacterial DNA-binding protein CYD28_RS07000 PF01209 ubiE/COQ5 methyltransferase family CYD28_RS07005 PF00348 Polyprenyl synthetase CYD28_RS07010 PF00334 Nucleoside diphosphate kinase CYD28_RS07015 PF01264 Chorismate synthase CYD28_RS07020 PF01761 3-dehydroquinate synthase CYD28_RS07025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYD28_RS07035 PF08864 UPF0302 domain CYD28_RS07035 PF08858 IDEAL domain CYD28_RS07040 PF07187 Protein of unknown function (DUF1405) CYD28_RS07045 PF04298 Putative neutral zinc metallopeptidase CYD28_RS07050 PF03819 MazG nucleotide pyrophosphohydrolase domain CYD28_RS07055 PF13439 Glycosyltransferase Family 4 CYD28_RS07055 PF00534 Glycosyl transferases group 1 CYD28_RS07060 PF13735 tRNA nucleotidyltransferase domain 2 putative CYD28_RS07060 PF12627 Probable RNA and SrmB- binding site of polymerase A CYD28_RS07060 PF01743 Poly A polymerase head domain CYD28_RS07065 PF08279 HTH domain CYD28_RS07065 PF02237 Biotin protein ligase C terminal domain CYD28_RS07065 PF03099 Biotin/lipoate A/B protein ligase family CYD28_RS07070 PF00929 Exonuclease CYD28_RS07070 PF04851 Type III restriction enzyme, res subunit CYD28_RS07070 PF13307 Helicase C-terminal domain CYD28_RS07075 PF01336 OB-fold nucleic acid binding domain CYD28_RS07075 PF00152 tRNA synthetases class II (D, K and N) CYD28_RS07080 PF07261 Replication initiation and membrane attachment CYD28_RS07085 PF00730 HhH-GPD superfamily base excision DNA repair protein CYD28_RS07085 PF00633 Helix-hairpin-helix motif CYD28_RS07085 PF10576 Iron-sulfur binding domain of endonuclease III CYD28_RS07095 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS07095 PF00912 Transglycosylase CYD28_RS07100 PF03838 Recombination protein U CYD28_RS07110 PF06908 YspA SLOG family CYD28_RS07115 PF05103 DivIVA protein CYD28_RS07125 PF01170 Putative RNA methylase family UPF0020 CYD28_RS07125 PF02926 THUMP domain CYD28_RS07135 PF00350 Dynamin family CYD28_RS07140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CYD28_RS07140 PF01367 5'-3' exonuclease, C-terminal SAM fold CYD28_RS07145 PF01468 GA module CYD28_RS07145 PF07564 Domain of Unknown Function (DUF1542) CYD28_RS07145 PF04650 YSIRK type signal peptide CYD28_RS07150 PF04650 YSIRK type signal peptide CYD28_RS07150 PF07564 Domain of Unknown Function (DUF1542) CYD28_RS07150 PF01468 GA module CYD28_RS07165 PF02592 Putative vitamin uptake transporter CYD28_RS07175 PF13769 Virulence factor CYD28_RS07175 PF08712 Scaffold protein Nfu/NifU N terminal CYD28_RS07180 PF13769 Virulence factor CYD28_RS07180 PF08712 Scaffold protein Nfu/NifU N terminal CYD28_RS07185 PF06491 Disulphide isomerase CYD28_RS07190 PF00303 Thymidylate synthase CYD28_RS07195 PF00186 Dihydrofolate reductase CYD28_RS07200 PF02645 Uncharacterised protein, DegV family COG1307 CYD28_RS07205 PF01625 Peptide methionine sulfoxide reductase CYD28_RS07210 PF01641 SelR domain CYD28_RS07215 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CYD28_RS07220 PF06855 YozE SAM-like fold CYD28_RS07225 PF01471 Putative peptidoglycan binding domain CYD28_RS07225 PF03572 Peptidase family S41 CYD28_RS07225 PF17820 PDZ domain CYD28_RS07235 PF03033 Glycosyltransferase family 28 N-terminal domain CYD28_RS07235 PF04101 Glycosyltransferase family 28 C-terminal domain CYD28_RS07240 PF01569 PAP2 superfamily CYD28_RS07245 PF00072 Response regulator receiver domain CYD28_RS07245 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS07250 PF18719 ArlS sensor domain CYD28_RS07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS07250 PF00512 His Kinase A (phospho-acceptor) domain CYD28_RS07255 PF00676 Dehydrogenase E1 component CYD28_RS07255 PF16870 2-oxoglutarate dehydrogenase C-terminal CYD28_RS07255 PF02779 Transketolase, pyrimidine binding domain CYD28_RS07260 PF02817 e3 binding domain CYD28_RS07260 PF00364 Biotin-requiring enzyme CYD28_RS07260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYD28_RS07280 PF07728 AAA domain (dynein-related subfamily) CYD28_RS07280 PF08406 CbbQ/NirQ/NorQ C-terminal CYD28_RS07285 PF00092 von Willebrand factor type A domain CYD28_RS07290 PF05525 Branched-chain amino acid transport protein CYD28_RS07295 PF05816 Toxic anion resistance protein (TelA) CYD28_RS07305 PF00708 Acylphosphatase CYD28_RS07315 PF00313 'Cold-shock' DNA-binding domain CYD28_RS07320 PF13683 Integrase core domain CYD28_RS07320 PF01610 Transposase CYD28_RS07325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYD28_RS07325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CYD28_RS07330 PF01168 Alanine racemase, N-terminal domain CYD28_RS07330 PF00842 Alanine racemase, C-terminal domain CYD28_RS07335 PF01546 Peptidase family M20/M25/M40 CYD28_RS07340 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CYD28_RS07340 PF00132 Bacterial transferase hexapeptide (six repeats) CYD28_RS07340 PF14602 Hexapeptide repeat of succinyl-transferase CYD28_RS07345 PF01113 Dihydrodipicolinate reductase, N-terminus CYD28_RS07345 PF05173 Dihydrodipicolinate reductase, C-terminus CYD28_RS07350 PF00701 Dihydrodipicolinate synthetase family CYD28_RS07355 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYD28_RS07355 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYD28_RS07360 PF13840 ACT domain CYD28_RS07360 PF00696 Amino acid kinase family CYD28_RS07365 PF12848 ABC transporter CYD28_RS07365 PF00005 ABC transporter CYD28_RS07370 PF17783 CvfB-like winged helix domain CYD28_RS07370 PF13509 S1 domain CYD28_RS07375 PF12849 PBP superfamily domain CYD28_RS07380 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS07385 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS07390 PF00005 ABC transporter CYD28_RS07395 PF01895 PhoU domain CYD28_RS07400 PF08439 Oligopeptidase F CYD28_RS07400 PF01432 Peptidase family M3 CYD28_RS07410 PF01497 Periplasmic binding protein CYD28_RS07420 PF02388 FemAB family CYD28_RS07425 PF02388 FemAB family CYD28_RS07435 PF00290 Tryptophan synthase alpha chain CYD28_RS07440 PF00291 Pyridoxal-phosphate dependent enzyme CYD28_RS07445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CYD28_RS07450 PF00218 Indole-3-glycerol phosphate synthase CYD28_RS07455 PF00591 Glycosyl transferase family, a/b domain CYD28_RS07460 PF00117 Glutamine amidotransferase class-I CYD28_RS07465 PF04715 Anthranilate synthase component I, N terminal region CYD28_RS07465 PF00425 chorismate binding enzyme CYD28_RS07470 PF05343 M42 glutamyl aminopeptidase CYD28_RS07475 PF02153 Prephenate dehydrogenase CYD28_RS07480 PF11798 IMS family HHH motif CYD28_RS07480 PF00817 impB/mucB/samB family CYD28_RS07480 PF11799 impB/mucB/samB family C-terminal domain CYD28_RS07485 PF01361 Tautomerase enzyme CYD28_RS07490 PF03816 Cell envelope-related transcriptional attenuator domain CYD28_RS07495 PF01625 Peptide methionine sulfoxide reductase CYD28_RS07500 PF09924 Uncharacterised conserved protein (DUF2156) CYD28_RS07500 PF03706 Lysylphosphatidylglycerol synthase TM region CYD28_RS07505 PF01594 AI-2E family transporter CYD28_RS07510 PF00874 PRD domain CYD28_RS07510 PF03123 CAT RNA binding domain CYD28_RS07515 PF01235 Sodium:alanine symporter family CYD28_RS07520 PF00521 DNA gyrase/topoisomerase IV, subunit A CYD28_RS07520 PF03989 DNA gyrase C-terminal domain, beta-propeller CYD28_RS07525 PF00986 DNA gyrase B subunit, carboxyl terminus CYD28_RS07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS07525 PF00204 DNA gyrase B CYD28_RS07525 PF01751 Toprim domain CYD28_RS07530 PF02660 Glycerol-3-phosphate acyltransferase CYD28_RS07540 PF03061 Thioesterase superfamily CYD28_RS07545 PF00694 Aconitase C-terminal domain CYD28_RS07545 PF00330 Aconitase family (aconitate hydratase) CYD28_RS07550 PF02028 BCCT, betaine/carnitine/choline family transporter CYD28_RS07555 PF01741 Large-conductance mechanosensitive channel, MscL CYD28_RS07560 PF13476 AAA domain CYD28_RS07565 PF00149 Calcineurin-like phosphoesterase CYD28_RS07570 PF07301 Protein of unknown function (DUF1453) CYD28_RS07580 PF00456 Transketolase, thiamine diphosphate binding domain CYD28_RS07580 PF02779 Transketolase, pyrimidine binding domain CYD28_RS07580 PF02780 Transketolase, C-terminal domain CYD28_RS07585 PF05979 Bacterial protein of unknown function (DUF896) CYD28_RS07595 PF01726 LexA DNA binding domain CYD28_RS07595 PF00717 Peptidase S24-like CYD28_RS07600 PF00188 Cysteine-rich secretory protein family CYD28_RS07600 PF14504 CAP-associated N-terminal CYD28_RS07605 PF00478 IMP dehydrogenase / GMP reductase domain CYD28_RS07610 PF00253 Ribosomal protein S14p/S29e CYD28_RS07615 PF00471 Ribosomal protein L33 CYD28_RS07620 PF06628 Catalase-related immune-responsive CYD28_RS07620 PF00199 Catalase CYD28_RS07625 PF00324 Amino acid permease CYD28_RS07640 PF00288 GHMP kinases N terminal domain CYD28_RS07640 PF08544 GHMP kinases C terminal CYD28_RS07645 PF00291 Pyridoxal-phosphate dependent enzyme CYD28_RS07650 PF03447 Homoserine dehydrogenase, NAD binding domain CYD28_RS07650 PF00742 Homoserine dehydrogenase CYD28_RS07650 PF01842 ACT domain CYD28_RS07655 PF13840 ACT domain CYD28_RS07655 PF00696 Amino acid kinase family CYD28_RS07670 PF00565 Staphylococcal nuclease homologue CYD28_RS07685 PF00072 Response regulator receiver domain CYD28_RS07685 PF00196 Bacterial regulatory proteins, luxR family CYD28_RS07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS07690 PF07730 Histidine kinase CYD28_RS07700 PF00005 ABC transporter CYD28_RS07705 PF13091 PLD-like domain CYD28_RS07705 PF13396 Phospholipase_D-nuclease N-terminal CYD28_RS07775 PF05105 Bacteriophage holin family CYD28_RS07810 PF01464 Transglycosylase SLT domain CYD28_RS07855 PF00574 Clp protease CYD28_RS07940 PF01695 IstB-like ATP binding protein CYD28_RS07965 PF00436 Single-strand binding protein family CYD28_RS08005 PF00872 Transposase, Mutator family CYD28_RS08025 PF00120 Glutamine synthetase, catalytic domain CYD28_RS08025 PF03951 Glutamine synthetase, beta-Grasp domain CYD28_RS08030 PF13411 MerR HTH family regulatory protein CYD28_RS08035 PF06838 Methionine gamma-lyase CYD28_RS08040 PF16360 GTP-binding GTPase Middle Region CYD28_RS08040 PF13167 GTP-binding GTPase N-terminal CYD28_RS08040 PF01926 50S ribosome-binding GTPase CYD28_RS08045 PF00255 Glutathione peroxidase CYD28_RS08050 PF17209 Hfq protein CYD28_RS08065 PF01266 FAD dependent oxidoreductase CYD28_RS08065 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CYD28_RS08070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYD28_RS08070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYD28_RS08075 PF00230 Major intrinsic protein CYD28_RS08085 PF01119 DNA mismatch repair protein, C-terminal domain CYD28_RS08085 PF08676 MutL C terminal dimerisation domain CYD28_RS08090 PF01624 MutS domain I CYD28_RS08090 PF05188 MutS domain II CYD28_RS08090 PF05190 MutS family domain IV CYD28_RS08090 PF05192 MutS domain III CYD28_RS08090 PF00488 MutS domain V CYD28_RS08100 PF06133 Control of competence regulator ComK, YlbF/YmcA CYD28_RS08105 PF04055 Radical SAM superfamily CYD28_RS08105 PF00919 Uncharacterized protein family UPF0004 CYD28_RS08105 PF01938 TRAM domain CYD28_RS08115 PF05908 Poly-gamma-glutamate hydrolase CYD28_RS08120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS08125 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CYD28_RS08125 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CYD28_RS08125 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CYD28_RS08130 PF13277 YmdB-like protein CYD28_RS08140 PF01966 HD domain CYD28_RS08140 PF00013 KH domain CYD28_RS08140 PF12072 Domain of unknown function (DUF3552) CYD28_RS08145 PF00872 Transposase, Mutator family CYD28_RS08150 PF01636 Phosphotransferase enzyme family CYD28_RS08155 PF00583 Acetyltransferase (GNAT) family CYD28_RS08160 PF00872 Transposase, Mutator family CYD28_RS08165 PF00154 recA bacterial DNA recombination protein CYD28_RS08170 PF02464 Competence-damaged protein CYD28_RS08170 PF18146 Damage-inducible protein CinA KH domain CYD28_RS08170 PF00994 Probable molybdopterin binding domain CYD28_RS08175 PF01066 CDP-alcohol phosphatidyltransferase CYD28_RS08185 PF11868 Protein of unknown function (DUF3388) CYD28_RS08195 PF05193 Peptidase M16 inactive domain CYD28_RS08195 PF00675 Insulinase (Peptidase family M16) CYD28_RS08200 PF05193 Peptidase M16 inactive domain CYD28_RS08205 PF07702 UTRA domain CYD28_RS08205 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS08210 PF17854 FtsK alpha domain CYD28_RS08210 PF09397 Ftsk gamma domain CYD28_RS08210 PF01580 FtsK/SpoIIIE family CYD28_RS08215 PF00753 Metallo-beta-lactamase superfamily CYD28_RS08215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYD28_RS08215 PF17770 Ribonuclease J C-terminal domain CYD28_RS08220 PF03725 3' exoribonuclease family, domain 2 CYD28_RS08220 PF00575 S1 RNA binding domain CYD28_RS08220 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CYD28_RS08220 PF00013 KH domain CYD28_RS08220 PF01138 3' exoribonuclease family, domain 1 CYD28_RS08225 PF00312 Ribosomal protein S15 CYD28_RS08230 PF01687 Riboflavin kinase CYD28_RS08230 PF06574 FAD synthetase CYD28_RS08235 PF16198 tRNA pseudouridylate synthase B C-terminal domain CYD28_RS08235 PF01509 TruB family pseudouridylate synthase (N terminal domain) CYD28_RS08240 PF02033 Ribosome-binding factor A CYD28_RS08245 PF11987 Translation-initiation factor 2 CYD28_RS08245 PF04760 Translation initiation factor IF-2, N-terminal region CYD28_RS08245 PF00009 Elongation factor Tu GTP binding domain CYD28_RS08250 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CYD28_RS08255 PF04296 Protein of unknown function (DUF448) CYD28_RS08260 PF00575 S1 RNA binding domain CYD28_RS08260 PF08529 NusA N-terminal domain CYD28_RS08260 PF13184 NusA-like KH domain CYD28_RS08265 PF02576 RimP N-terminal domain CYD28_RS08265 PF17384 RimP C-terminal SH3 domain CYD28_RS08270 PF14480 DNA polymerase III polC-type N-terminus I CYD28_RS08270 PF11490 DNA polymerase III polC-type N-terminus II CYD28_RS08270 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYD28_RS08270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYD28_RS08270 PF14579 Helix-hairpin-helix motif CYD28_RS08270 PF02811 PHP domain CYD28_RS08270 PF00929 Exonuclease CYD28_RS08275 PF03129 Anticodon binding domain CYD28_RS08275 PF04073 Aminoacyl-tRNA editing domain CYD28_RS08275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYD28_RS08280 PF13180 PDZ domain CYD28_RS08280 PF02163 Peptidase family M50 CYD28_RS08290 PF01255 Putative undecaprenyl diphosphate synthase CYD28_RS08295 PF01765 Ribosome recycling factor CYD28_RS08300 PF00696 Amino acid kinase family CYD28_RS08305 PF00889 Elongation factor TS CYD28_RS08310 PF00318 Ribosomal protein S2 CYD28_RS08315 PF08222 CodY helix-turn-helix domain CYD28_RS08315 PF06018 CodY GAF-like domain CYD28_RS08320 PF10431 C-terminal, D2-small domain, of ClpB protein CYD28_RS08320 PF07724 AAA domain (Cdc48 subfamily) CYD28_RS08325 PF00227 Proteasome subunit CYD28_RS08330 PF00589 Phage integrase family CYD28_RS08330 PF02899 Phage integrase, N-terminal SAM-like domain CYD28_RS08335 PF01134 Glucose inhibited division protein A CYD28_RS08340 PF01131 DNA topoisomerase CYD28_RS08340 PF01751 Toprim domain CYD28_RS08340 PF01396 Topoisomerase DNA binding C4 zinc finger CYD28_RS08345 PF02481 DNA recombination-mediator protein A CYD28_RS08350 PF02388 FemAB family CYD28_RS08355 PF00549 CoA-ligase CYD28_RS08355 PF02629 CoA binding domain CYD28_RS08360 PF08442 ATP-grasp domain CYD28_RS08360 PF00549 CoA-ligase CYD28_RS08365 PF01351 Ribonuclease HII CYD28_RS08370 PF01926 50S ribosome-binding GTPase CYD28_RS08375 PF09586 Bacterial membrane protein YfhO CYD28_RS08385 PF01245 Ribosomal protein L19 CYD28_RS08390 PF01746 tRNA (Guanine-1)-methyltransferase CYD28_RS08395 PF05239 PRC-barrel domain CYD28_RS08395 PF01782 RimM N-terminal domain CYD28_RS08400 PF00886 Ribosomal protein S16 CYD28_RS08405 PF02881 SRP54-type protein, helical bundle domain CYD28_RS08405 PF00448 SRP54-type protein, GTPase domain CYD28_RS08405 PF02978 Signal peptide binding domain CYD28_RS08410 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CYD28_RS08415 PF00448 SRP54-type protein, GTPase domain CYD28_RS08415 PF02881 SRP54-type protein, helical bundle domain CYD28_RS08420 PF06470 SMC proteins Flexible Hinge Domain CYD28_RS08420 PF02463 RecF/RecN/SMC N terminal domain CYD28_RS08425 PF00035 Double-stranded RNA binding motif CYD28_RS08425 PF14622 Ribonuclease-III-like CYD28_RS08430 PF00550 Phosphopantetheine attachment site CYD28_RS08440 PF00698 Acyl transferase domain CYD28_RS08445 PF02504 Fatty acid synthesis protein CYD28_RS08450 PF01575 MaoC like domain CYD28_RS08455 PF17191 RecG wedge domain CYD28_RS08455 PF00270 DEAD/DEAH box helicase CYD28_RS08455 PF00271 Helicase conserved C-terminal domain CYD28_RS08460 PF00565 Staphylococcal nuclease homologue CYD28_RS08465 PF13684 Dihydroxyacetone kinase family CYD28_RS08465 PF02734 DAK2 domain CYD28_RS08470 PF03780 Asp23 family, cell envelope-related function CYD28_RS08475 PF00830 Ribosomal L28 family CYD28_RS08480 PF04263 Thiamin pyrophosphokinase, catalytic domain CYD28_RS08480 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain CYD28_RS08485 PF00834 Ribulose-phosphate 3 epimerase family CYD28_RS08490 PF16745 RsgA N-terminal domain CYD28_RS08490 PF03193 RsgA GTPase CYD28_RS08495 PF00069 Protein kinase domain CYD28_RS08495 PF03793 PASTA domain CYD28_RS08505 PF04055 Radical SAM superfamily CYD28_RS08510 PF01189 16S rRNA methyltransferase RsmB/F CYD28_RS08510 PF01029 NusB family CYD28_RS08515 PF02911 Formyl transferase, C-terminal domain CYD28_RS08515 PF00551 Formyl transferase CYD28_RS08520 PF01327 Polypeptide deformylase CYD28_RS08530 PF04851 Type III restriction enzyme, res subunit CYD28_RS08530 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CYD28_RS08530 PF00271 Helicase conserved C-terminal domain CYD28_RS08530 PF18074 Primosomal protein N C-terminal domain CYD28_RS08530 PF17764 3′ DNA-binding domain (3′BD) CYD28_RS08535 PF02441 Flavoprotein CYD28_RS08535 PF04127 DNA / pantothenate metabolism flavoprotein CYD28_RS08540 PF01192 RNA polymerase Rpb6 CYD28_RS08545 PF00625 Guanylate kinase CYD28_RS08550 PF05670 NFACT protein RNA binding domain CYD28_RS08565 PF00156 Phosphoribosyl transferase domain CYD28_RS08570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYD28_RS08575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYD28_RS08575 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYD28_RS08575 PF02142 MGS-like domain CYD28_RS08580 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CYD28_RS08580 PF00117 Glutamine amidotransferase class-I CYD28_RS08585 PF01979 Amidohydrolase family CYD28_RS08590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYD28_RS08590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYD28_RS08595 PF00860 Permease family CYD28_RS08600 PF00156 Phosphoribosyl transferase domain CYD28_RS08605 PF00849 RNA pseudouridylate synthase CYD28_RS08605 PF01479 S4 domain CYD28_RS08610 PF01252 Signal peptidase (SPase) II CYD28_RS08615 PF05257 CHAP domain CYD28_RS08615 PF01476 LysM domain CYD28_RS08625 PF11066 Protein of unknown function (DUF2867) CYD28_RS08625 PF13460 NAD(P)H-binding CYD28_RS08630 PF06827 Zinc finger found in FPG and IleRS CYD28_RS08630 PF08264 Anticodon-binding domain of tRNA CYD28_RS08630 PF00133 tRNA synthetases class I (I, L, M and V) CYD28_RS08635 PF05103 DivIVA protein CYD28_RS08645 PF02325 YGGT family CYD28_RS08650 PF04472 Cell division protein SepF CYD28_RS08655 PF01168 Alanine racemase, N-terminal domain CYD28_RS08660 PF02578 Multi-copper polyphenol oxidoreductase laccase CYD28_RS08665 PF12327 FtsZ family, C-terminal domain CYD28_RS08665 PF00091 Tubulin/FtsZ family, GTPase domain CYD28_RS08670 PF02491 SHS2 domain inserted in FTSA CYD28_RS08675 PF08478 POTRA domain, FtsQ-type CYD28_RS08675 PF03799 Cell division protein FtsQ CYD28_RS08680 PF08245 Mur ligase middle domain CYD28_RS08680 PF02875 Mur ligase family, glutamate ligase domain CYD28_RS08685 PF00953 Glycosyl transferase family 4 CYD28_RS08690 PF03793 PASTA domain CYD28_RS08690 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS08690 PF03717 Penicillin-binding Protein dimerisation domain CYD28_RS08695 PF04977 Septum formation initiator CYD28_RS08700 PF01795 MraW methylase family CYD28_RS08705 PF02381 MraZ protein, putative antitoxin-like CYD28_RS08710 PF10079 Bacillithiol biosynthesis BshC CYD28_RS08720 PF13419 Haloacid dehalogenase-like hydrolase CYD28_RS08725 PF05480 Staphylococcus haemolytic protein CYD28_RS08730 PF05480 Staphylococcus haemolytic protein CYD28_RS08735 PF05480 Staphylococcus haemolytic protein CYD28_RS08740 PF05480 Staphylococcus haemolytic protein CYD28_RS08745 PF05480 Staphylococcus haemolytic protein CYD28_RS08755 PF12850 Calcineurin-like phosphoesterase superfamily domain CYD28_RS08760 PF01725 Ham1 family CYD28_RS08765 PF01177 Asp/Glu/Hydantoin racemase CYD28_RS08770 PF13183 4Fe-4S dicluster domain CYD28_RS08770 PF13085 2Fe-2S iron-sulfur cluster binding domain CYD28_RS08775 PF00890 FAD binding domain CYD28_RS08775 PF02910 Fumarate reductase flavoprotein C-term CYD28_RS08780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CYD28_RS08785 PF01541 GIY-YIG catalytic domain CYD28_RS08785 PF08459 UvrC Helix-hairpin-helix N-terminal CYD28_RS08785 PF02151 UvrB/uvrC motif CYD28_RS08790 PF00085 Thioredoxin CYD28_RS08795 PF00488 MutS domain V CYD28_RS08795 PF01713 Smr domain CYD28_RS08800 PF02811 PHP domain CYD28_RS08800 PF14716 Helix-hairpin-helix domain CYD28_RS08800 PF14791 DNA polymerase beta thumb CYD28_RS08810 PF05164 Cell division protein ZapA CYD28_RS08815 PF01351 Ribonuclease HII CYD28_RS08815 PF11858 Domain of unknown function (DUF3378) CYD28_RS08820 PF01588 Putative tRNA binding domain CYD28_RS08820 PF03483 B3/4 domain CYD28_RS08820 PF03484 tRNA synthetase B5 domain CYD28_RS08820 PF03147 Ferredoxin-fold anticodon binding domain CYD28_RS08820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CYD28_RS08825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CYD28_RS08825 PF01409 tRNA synthetases class II core domain (F) CYD28_RS08830 PF00588 SpoU rRNA Methylase family CYD28_RS08830 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYD28_RS08835 PF01783 Ribosomal L32p protein family CYD28_RS08850 PF05636 HIGH Nucleotidyl Transferase CYD28_RS08855 PF01467 Cytidylyltransferase-like CYD28_RS08870 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CYD28_RS08875 PF03009 Glycerophosphoryl diester phosphodiesterase family CYD28_RS08880 PF06133 Control of competence regulator ComK, YlbF/YmcA CYD28_RS08885 PF14504 CAP-associated N-terminal CYD28_RS08885 PF00188 Cysteine-rich secretory protein family CYD28_RS08895 PF01040 UbiA prenyltransferase family CYD28_RS08900 PF02628 Cytochrome oxidase assembly protein CYD28_RS08905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYD28_RS08905 PF00364 Biotin-requiring enzyme CYD28_RS08905 PF00289 Biotin carboxylase, N-terminal domain CYD28_RS08905 PF02436 Conserved carboxylase domain CYD28_RS08905 PF02785 Biotin carboxylase C-terminal domain CYD28_RS08905 PF00682 HMGL-like CYD28_RS08910 PF01098 Cell cycle protein CYD28_RS08915 PF07408 Protein of unknown function (DUF1507) CYD28_RS08925 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) CYD28_RS08930 PF03144 Elongation factor Tu domain 2 CYD28_RS08930 PF00009 Elongation factor Tu GTP binding domain CYD28_RS08930 PF14492 Elongation Factor G, domain II CYD28_RS08930 PF00679 Elongation factor G C-terminus CYD28_RS08940 PF00459 Inositol monophosphatase family CYD28_RS08945 PF06335 Protein of unknown function (DUF1054) CYD28_RS08950 PF01566 Natural resistance-associated macrophage protein CYD28_RS08965 PF13416 Bacterial extracellular solute-binding protein CYD28_RS08970 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS08975 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS08980 PF08402 TOBE domain CYD28_RS08980 PF00005 ABC transporter CYD28_RS08985 PF01381 Helix-turn-helix CYD28_RS08985 PF06114 IrrE N-terminal-like domain CYD28_RS08985 PF09856 Predicted transcriptional regulator (DUF2083) CYD28_RS08990 PF05256 Uncharacterised protein family (UPF0223) CYD28_RS08995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS08995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS09000 PF00364 Biotin-requiring enzyme CYD28_RS09000 PF02817 e3 binding domain CYD28_RS09000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYD28_RS09005 PF02779 Transketolase, pyrimidine binding domain CYD28_RS09005 PF02780 Transketolase, C-terminal domain CYD28_RS09010 PF00676 Dehydrogenase E1 component CYD28_RS09020 PF01327 Polypeptide deformylase CYD28_RS09025 PF07288 Protein of unknown function (DUF1447) CYD28_RS09030 PF00753 Metallo-beta-lactamase superfamily CYD28_RS09030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CYD28_RS09030 PF17770 Ribonuclease J C-terminal domain CYD28_RS09040 PF04304 Protein of unknown function (DUF454) CYD28_RS09045 PF02080 TrkA-C domain CYD28_RS09045 PF02254 TrkA-N domain CYD28_RS09050 PF02322 Cytochrome bd terminal oxidase subunit II CYD28_RS09055 PF01654 Cytochrome bd terminal oxidase subunit I CYD28_RS09075 PF00391 PEP-utilising enzyme, mobile domain CYD28_RS09075 PF02896 PEP-utilising enzyme, TIM barrel domain CYD28_RS09075 PF05524 PEP-utilising enzyme, N-terminal CYD28_RS09080 PF00381 PTS HPr component phosphorylation site CYD28_RS09090 PF17785 PUA-like domain CYD28_RS09090 PF10672 S-adenosylmethionine-dependent methyltransferase CYD28_RS09110 PF00005 ABC transporter CYD28_RS09115 PF02361 Cobalt transport protein CYD28_RS09120 PF02843 Phosphoribosylglycinamide synthetase, C domain CYD28_RS09120 PF02844 Phosphoribosylglycinamide synthetase, N domain CYD28_RS09120 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CYD28_RS09125 PF02142 MGS-like domain CYD28_RS09125 PF01808 AICARFT/IMPCHase bienzyme CYD28_RS09130 PF00551 Formyl transferase CYD28_RS09135 PF00586 AIR synthase related protein, N-terminal domain CYD28_RS09135 PF02769 AIR synthase related protein, C-terminal domain CYD28_RS09140 PF00156 Phosphoribosyl transferase domain CYD28_RS09140 PF13537 Glutamine amidotransferase domain CYD28_RS09145 PF00586 AIR synthase related protein, N-terminal domain CYD28_RS09145 PF02769 AIR synthase related protein, C-terminal domain CYD28_RS09145 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CYD28_RS09155 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CYD28_RS09160 PF01259 SAICAR synthetase CYD28_RS09165 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CYD28_RS09165 PF02222 ATP-grasp domain CYD28_RS09165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS09170 PF00731 AIR carboxylase CYD28_RS09175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CYD28_RS09175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CYD28_RS09190 PF00175 Oxidoreductase NAD-binding domain CYD28_RS09190 PF00970 Oxidoreductase FAD-binding domain CYD28_RS09190 PF00042 Globin CYD28_RS09200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CYD28_RS09200 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CYD28_RS09205 PF00115 Cytochrome C and Quinol oxidase polypeptide I CYD28_RS09210 PF00510 Cytochrome c oxidase subunit III CYD28_RS09215 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CYD28_RS09220 PF01156 Inosine-uridine preferring nucleoside hydrolase CYD28_RS09225 PF00144 Beta-lactamase CYD28_RS09230 PF03816 Cell envelope-related transcriptional attenuator domain CYD28_RS09235 PF10804 Protein of unknown function (DUF2538) CYD28_RS09240 PF13673 Acetyltransferase (GNAT) domain CYD28_RS09245 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CYD28_RS09245 PF13457 GW (Gly-Tryp) dipeptide domain CYD28_RS09260 PF01757 Acyltransferase family CYD28_RS09265 PF00155 Aminotransferase class I and II CYD28_RS09270 PF00378 Enoyl-CoA hydratase/isomerase CYD28_RS09275 PF12697 Alpha/beta hydrolase family CYD28_RS09280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYD28_RS09280 PF16582 Middle domain of thiamine pyrophosphate CYD28_RS09280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYD28_RS09285 PF00425 chorismate binding enzyme CYD28_RS09290 PF01040 UbiA prenyltransferase family CYD28_RS09340 PF03099 Biotin/lipoate A/B protein ligase family CYD28_RS09340 PF10437 Bacterial lipoate protein ligase C-terminus CYD28_RS09345 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) CYD28_RS09365 PF02386 Cation transport protein CYD28_RS09370 PF13180 PDZ domain CYD28_RS09375 PF03741 Integral membrane protein TerC family CYD28_RS09380 PF16658 Class II release factor RF3, C-terminal domain CYD28_RS09380 PF03144 Elongation factor Tu domain 2 CYD28_RS09380 PF00009 Elongation factor Tu GTP binding domain CYD28_RS09390 PF02875 Mur ligase family, glutamate ligase domain CYD28_RS09390 PF01225 Mur ligase family, catalytic domain CYD28_RS09390 PF08245 Mur ligase middle domain CYD28_RS09395 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CYD28_RS09395 PF04101 Glycosyltransferase family 28 C-terminal domain CYD28_RS09400 PF07690 Major Facilitator Superfamily CYD28_RS09405 PF01610 Transposase CYD28_RS09405 PF13683 Integrase core domain CYD28_RS09415 PF00756 Putative esterase CYD28_RS09420 PF01594 AI-2E family transporter CYD28_RS09430 PF02080 TrkA-C domain CYD28_RS09430 PF00999 Sodium/hydrogen exchanger family CYD28_RS09430 PF02254 TrkA-N domain CYD28_RS09435 PF03448 MgtE intracellular N domain CYD28_RS09435 PF00571 CBS domain CYD28_RS09435 PF01769 Divalent cation transporter CYD28_RS09440 PF00849 RNA pseudouridylate synthase CYD28_RS09445 PF01513 ATP-NAD kinase CYD28_RS09450 PF04607 Region found in RelA / SpoT proteins CYD28_RS09460 PF01928 CYTH domain CYD28_RS09465 PF01152 Bacterial-like globin CYD28_RS09475 PF08439 Oligopeptidase F CYD28_RS09475 PF01432 Peptidase family M3 CYD28_RS09485 PF05389 Negative regulator of genetic competence (MecA) CYD28_RS09490 PF03960 ArsC family CYD28_RS09495 PF00579 tRNA synthetases class I (W and Y) CYD28_RS09505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYD28_RS09510 PF00005 ABC transporter CYD28_RS09510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYD28_RS09515 PF00005 ABC transporter CYD28_RS09515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYD28_RS09520 PF12911 N-terminal TM domain of oligopeptide transport permease C CYD28_RS09520 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS09525 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS09535 PF02801 Beta-ketoacyl synthase, C-terminal domain CYD28_RS09535 PF00109 Beta-ketoacyl synthase, N-terminal domain CYD28_RS09540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CYD28_RS09540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CYD28_RS09550 PF10431 C-terminal, D2-small domain, of ClpB protein CYD28_RS09550 PF00004 ATPase family associated with various cellular activities (AAA) CYD28_RS09550 PF07724 AAA domain (Cdc48 subfamily) CYD28_RS09550 PF02861 Clp amino terminal domain, pathogenicity island component CYD28_RS09550 PF17871 AAA lid domain CYD28_RS09555 PF01757 Acyltransferase family CYD28_RS09560 PF01883 Iron-sulfur cluster assembly protein CYD28_RS09570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS09570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS09575 PF07457 Protein of unknown function (DUF1516) CYD28_RS09585 PF01557 Fumarylacetoacetate (FAA) hydrolase family CYD28_RS09590 PF13361 UvrD-like helicase C-terminal domain CYD28_RS09590 PF12705 PD-(D/E)XK nuclease superfamily CYD28_RS09590 PF00580 UvrD/REP helicase N-terminal domain CYD28_RS09595 PF13361 UvrD-like helicase C-terminal domain CYD28_RS09595 PF12705 PD-(D/E)XK nuclease superfamily CYD28_RS09600 PF10502 Signal peptidase, peptidase S26 CYD28_RS09605 PF10502 Signal peptidase, peptidase S26 CYD28_RS09610 PF09335 SNARE associated Golgi protein CYD28_RS09615 PF00342 Phosphoglucose isomerase CYD28_RS09620 PF00764 Arginosuccinate synthase CYD28_RS09625 PF00206 Lyase CYD28_RS09625 PF14698 Argininosuccinate lyase C-terminal CYD28_RS09630 PF03009 Glycerophosphoryl diester phosphodiesterase family CYD28_RS09635 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CYD28_RS09635 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CYD28_RS09640 PF00202 Aminotransferase class-III CYD28_RS09645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CYD28_RS09650 PF00575 S1 RNA binding domain CYD28_RS09655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYD28_RS09665 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYD28_RS09665 PF00361 Proton-conducting membrane transporter CYD28_RS09665 PF13244 Domain of unknown function (DUF4040) CYD28_RS09670 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CYD28_RS09675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYD28_RS09680 PF00361 Proton-conducting membrane transporter CYD28_RS09685 PF01899 Na+/H+ ion antiporter subunit CYD28_RS09690 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CYD28_RS09695 PF03334 Na+/H+ antiporter subunit CYD28_RS09705 PF03061 Thioesterase superfamily CYD28_RS09710 PF13726 Na+-H+ antiporter family CYD28_RS09710 PF03553 Na+/H+ antiporter family CYD28_RS09715 PF00883 Cytosol aminopeptidase family, catalytic domain CYD28_RS09715 PF02789 Cytosol aminopeptidase family, N-terminal domain CYD28_RS09720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS09725 PF01521 Iron-sulphur cluster biosynthesis CYD28_RS09730 PF07293 Protein of unknown function (DUF1450) CYD28_RS09735 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS09740 PF07315 Protein of unknown function (DUF1462) CYD28_RS09745 PF01106 NifU-like domain CYD28_RS09755 PF04914 DltD protein CYD28_RS09760 PF00550 Phosphopantetheine attachment site CYD28_RS09765 PF03062 MBOAT, membrane-bound O-acyltransferase family CYD28_RS09770 PF13193 AMP-binding enzyme C-terminal domain CYD28_RS09770 PF00501 AMP-binding enzyme CYD28_RS09780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYD28_RS09780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYD28_RS09785 PF13344 Haloacid dehalogenase-like hydrolase CYD28_RS09790 PF01934 Protein of unknown function DUF86 CYD28_RS09800 PF06265 Protein of unknown function (DUF1027) CYD28_RS09805 PF04055 Radical SAM superfamily CYD28_RS09805 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CYD28_RS09810 PF02872 5'-nucleotidase, C-terminal domain CYD28_RS09815 PF01925 Sulfite exporter TauE/SafE CYD28_RS09820 PF01904 Protein of unknown function DUF72 CYD28_RS09825 PF03060 Nitronate monooxygenase CYD28_RS09835 PF01458 Uncharacterized protein family (UPF0051) CYD28_RS09840 PF01592 NifU-like N terminal domain CYD28_RS09845 PF00266 Aminotransferase class-V CYD28_RS09850 PF01458 Uncharacterized protein family (UPF0051) CYD28_RS09855 PF00005 ABC transporter CYD28_RS09870 PF05532 CsbD-like CYD28_RS09875 PF03180 NLPA lipoprotein CYD28_RS09880 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS09885 PF09383 NIL domain CYD28_RS09885 PF00005 ABC transporter CYD28_RS09895 PF01751 Toprim domain CYD28_RS09900 PF01597 Glycine cleavage H-protein CYD28_RS09905 PF03960 ArsC family CYD28_RS09910 PF00085 Thioredoxin CYD28_RS09920 PF01487 Type I 3-dehydroquinase CYD28_RS09925 PF02566 OsmC-like protein CYD28_RS09935 PF01810 LysE type translocator CYD28_RS09940 PF00300 Histidine phosphatase superfamily (branch 1) CYD28_RS09980 PF00583 Acetyltransferase (GNAT) family CYD28_RS09985 PF05908 Poly-gamma-glutamate hydrolase CYD28_RS10015 PF01668 SmpB protein CYD28_RS10020 PF08206 Ribonuclease B OB domain CYD28_RS10020 PF00773 RNB domain CYD28_RS10020 PF00575 S1 RNA binding domain CYD28_RS10020 PF17876 Cold shock domain CYD28_RS10025 PF12146 Serine aminopeptidase, S33 CYD28_RS10030 PF03840 Preprotein translocase SecG subunit CYD28_RS10040 PF00113 Enolase, C-terminal TIM barrel domain CYD28_RS10040 PF03952 Enolase, N-terminal domain CYD28_RS10045 PF01676 Metalloenzyme superfamily CYD28_RS10045 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CYD28_RS10050 PF00121 Triosephosphate isomerase CYD28_RS10055 PF00162 Phosphoglycerate kinase CYD28_RS10060 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYD28_RS10060 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYD28_RS10065 PF04198 Putative sugar-binding domain CYD28_RS10085 PF01370 NAD dependent epimerase/dehydratase family CYD28_RS10085 PF08338 Domain of unknown function (DUF1731) CYD28_RS10095 PF00574 Clp protease CYD28_RS10105 PF10298 WhiA N-terminal LAGLIDADG-like domain CYD28_RS10105 PF14527 WhiA LAGLIDADG-like domain CYD28_RS10105 PF02650 WhiA C-terminal HTH domain CYD28_RS10110 PF01933 Uncharacterised protein family UPF0052 CYD28_RS10115 PF03668 P-loop ATPase protein family CYD28_RS10120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS10130 PF14602 Hexapeptide repeat of succinyl-transferase CYD28_RS10135 PF01790 Prolipoprotein diacylglyceryl transferase CYD28_RS10140 PF02603 HPr Serine kinase N terminus CYD28_RS10140 PF07475 HPr Serine kinase C-terminal domain CYD28_RS10145 PF17760 UvrA interaction domain CYD28_RS10145 PF00005 ABC transporter CYD28_RS10145 PF17755 UvrA DNA-binding domain CYD28_RS10150 PF02151 UvrB/uvrC motif CYD28_RS10150 PF00271 Helicase conserved C-terminal domain CYD28_RS10150 PF04851 Type III restriction enzyme, res subunit CYD28_RS10150 PF17757 UvrB interaction domain CYD28_RS10150 PF12344 Ultra-violet resistance protein B CYD28_RS10165 PF00106 short chain dehydrogenase CYD28_RS10170 PF05257 CHAP domain CYD28_RS10170 PF01476 LysM domain CYD28_RS10180 PF02810 SEC-C motif CYD28_RS10180 PF07517 SecA DEAD-like domain CYD28_RS10180 PF07516 SecA Wing and Scaffold domain CYD28_RS10180 PF01043 SecA preprotein cross-linking domain CYD28_RS10185 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CYD28_RS10185 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CYD28_RS10195 PF04851 Type III restriction enzyme, res subunit CYD28_RS10195 PF00271 Helicase conserved C-terminal domain CYD28_RS10200 PF02645 Uncharacterised protein, DegV family COG1307 CYD28_RS10205 PF09186 Domain of unknown function (DUF1949) CYD28_RS10205 PF01205 Uncharacterized protein family UPF0029 CYD28_RS10210 PF00953 Glycosyl transferase family 4 CYD28_RS10215 PF00990 Diguanylate cyclase, GGDEF domain CYD28_RS10230 PF07687 Peptidase dimerisation domain CYD28_RS10230 PF01546 Peptidase family M20/M25/M40 CYD28_RS10235 PF02595 Glycerate kinase family CYD28_RS10255 PF01565 FAD binding domain CYD28_RS10255 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CYD28_RS10270 PF01497 Periplasmic binding protein CYD28_RS10275 PF00005 ABC transporter CYD28_RS10280 PF01032 FecCD transport family CYD28_RS10285 PF01032 FecCD transport family CYD28_RS10290 PF00268 Ribonucleotide reductase, small chain CYD28_RS10295 PF08343 Ribonucleotide reductase N-terminal CYD28_RS10295 PF00317 Ribonucleotide reductase, all-alpha domain CYD28_RS10295 PF02867 Ribonucleotide reductase, barrel domain CYD28_RS10300 PF07972 NrdI Flavodoxin like CYD28_RS10310 PF14489 QueF-like protein CYD28_RS10315 PF00854 POT family CYD28_RS10320 PF00781 Diacylglycerol kinase catalytic domain CYD28_RS10325 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) CYD28_RS10330 PF00155 Aminotransferase class I and II CYD28_RS10335 PF00854 POT family CYD28_RS10340 PF00528 Binding-protein-dependent transport system inner membrane component CYD28_RS10345 PF00005 ABC transporter CYD28_RS10345 PF00571 CBS domain CYD28_RS10350 PF00270 DEAD/DEAH box helicase CYD28_RS10350 PF00271 Helicase conserved C-terminal domain CYD28_RS10350 PF00570 HRDC domain CYD28_RS10350 PF16124 RecQ zinc-binding CYD28_RS10350 PF09382 RQC domain CYD28_RS10355 PF00005 ABC transporter CYD28_RS10355 PF12848 ABC transporter CYD28_RS10355 PF16326 ABC transporter C-terminal domain CYD28_RS10360 PF02535 ZIP Zinc transporter CYD28_RS10365 PF00884 Sulfatase CYD28_RS10370 PF02626 Carboxyltransferase domain, subdomain A and B CYD28_RS10375 PF02682 Carboxyltransferase domain, subdomain C and D CYD28_RS10390 PF04715 Anthranilate synthase component I, N terminal region CYD28_RS10390 PF00425 chorismate binding enzyme CYD28_RS10395 PF00591 Glycosyl transferase family, a/b domain CYD28_RS10395 PF02885 Glycosyl transferase family, helical bundle domain CYD28_RS10395 PF00117 Glutamine amidotransferase class-I CYD28_RS10400 PF06508 Queuosine biosynthesis protein QueC CYD28_RS10405 PF01242 6-pyruvoyl tetrahydropterin synthase CYD28_RS10410 PF04055 Radical SAM superfamily CYD28_RS10420 PF00535 Glycosyl transferase family 2 CYD28_RS10425 PF13683 Integrase core domain CYD28_RS10425 PF01610 Transposase CYD28_RS10430 PF00248 Aldo/keto reductase family CYD28_RS10435 PF01595 Cyclin M transmembrane N-terminal domain CYD28_RS10435 PF03471 Transporter associated domain CYD28_RS10435 PF00571 CBS domain CYD28_RS10440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYD28_RS10440 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYD28_RS10445 PF00294 pfkB family carbohydrate kinase CYD28_RS10450 PF08220 DeoR-like helix-turn-helix domain CYD28_RS10450 PF00455 DeoR C terminal sensor domain CYD28_RS10455 PF04073 Aminoacyl-tRNA editing domain CYD28_RS10465 PF07690 Major Facilitator Superfamily CYD28_RS10495 PF00939 Sodium:sulfate symporter transmembrane region CYD28_RS10505 PF07683 Cobalamin synthesis protein cobW C-terminal domain CYD28_RS10505 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYD28_RS10510 PF01047 MarR family CYD28_RS10515 PF00664 ABC transporter transmembrane region CYD28_RS10515 PF00005 ABC transporter CYD28_RS10520 PF00005 ABC transporter CYD28_RS10520 PF00664 ABC transporter transmembrane region CYD28_RS10525 PF02673 Bacitracin resistance protein BacA CYD28_RS10535 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CYD28_RS10540 PF03641 Possible lysine decarboxylase CYD28_RS10545 PF13302 Acetyltransferase (GNAT) domain CYD28_RS10560 PF00583 Acetyltransferase (GNAT) family CYD28_RS10570 PF04306 Protein of unknown function (DUF456) CYD28_RS10575 PF07690 Major Facilitator Superfamily CYD28_RS10580 PF03466 LysR substrate binding domain CYD28_RS10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYD28_RS10590 PF01717 Cobalamin-independent synthase, Catalytic domain CYD28_RS10605 PF01709 Transcriptional regulator CYD28_RS10615 PF12833 Helix-turn-helix domain CYD28_RS10625 PF05257 CHAP domain CYD28_RS10625 PF01476 LysM domain CYD28_RS10630 PF01384 Phosphate transporter family CYD28_RS10635 PF01865 Protein of unknown function DUF47 CYD28_RS10640 PF02687 FtsX-like permease family CYD28_RS10645 PF00005 ABC transporter CYD28_RS10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYD28_RS10655 PF00486 Transcriptional regulatory protein, C terminal CYD28_RS10655 PF00072 Response regulator receiver domain CYD28_RS10660 PF01370 NAD dependent epimerase/dehydratase family CYD28_RS10670 PF07859 alpha/beta hydrolase fold CYD28_RS10685 PF03610 PTS system fructose IIA component CYD28_RS10690 PF02734 DAK2 domain CYD28_RS10695 PF02733 Dak1 domain CYD28_RS10700 PF01032 FecCD transport family CYD28_RS10705 PF01032 FecCD transport family CYD28_RS10710 PF00005 ABC transporter CYD28_RS10715 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CYD28_RS10715 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CYD28_RS10720 PF01773 Na+ dependent nucleoside transporter N-terminus CYD28_RS10720 PF07662 Na+ dependent nucleoside transporter C-terminus CYD28_RS10725 PF00535 Glycosyl transferase family 2 CYD28_RS10725 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CYD28_RS10735 PF00005 ABC transporter CYD28_RS10735 PF00664 ABC transporter transmembrane region CYD28_RS10740 PF00872 Transposase, Mutator family CYD28_RS10745 PF00768 D-alanyl-D-alanine carboxypeptidase CYD28_RS10745 PF07943 Penicillin-binding protein 5, C-terminal domain CYD28_RS10750 PF01467 Cytidylyltransferase-like CYD28_RS10755 PF00535 Glycosyl transferase family 2 CYD28_RS10760 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CYD28_RS10765 PF01061 ABC-2 type transporter CYD28_RS10770 PF00005 ABC transporter CYD28_RS10775 PF03808 Glycosyl transferase WecB/TagA/CpsF family CYD28_RS10785 PF13683 Integrase core domain CYD28_RS10785 PF01610 Transposase CYD28_RS10790 PF01325 Iron dependent repressor, N-terminal DNA binding domain CYD28_RS10790 PF18357 Diphteria toxin repressor SH3 domain CYD28_RS10790 PF02742 Iron dependent repressor, metal binding and dimerisation domain CYD28_RS10795 PF00999 Sodium/hydrogen exchanger family CYD28_RS10800 PF01546 Peptidase family M20/M25/M40 CYD28_RS10800 PF07687 Peptidase dimerisation domain CYD28_RS10815 PF03334 Na+/H+ antiporter subunit CYD28_RS10820 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CYD28_RS10825 PF01899 Na+/H+ ion antiporter subunit CYD28_RS10830 PF00361 Proton-conducting membrane transporter CYD28_RS10835 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CYD28_RS10840 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CYD28_RS10845 PF00361 Proton-conducting membrane transporter CYD28_RS10845 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYD28_RS10845 PF13244 Domain of unknown function (DUF4040) CYD28_RS10850 PF00589 Phage integrase family CYD28_RS10850 PF02899 Phage integrase, N-terminal SAM-like domain CYD28_RS10880 PF13683 Integrase core domain CYD28_RS10880 PF01610 Transposase CYD28_RS10885 PF00561 alpha/beta hydrolase fold CYD28_RS10905 PF13419 Haloacid dehalogenase-like hydrolase CYD28_RS10910 PF01032 FecCD transport family CYD28_RS10915 PF01497 Periplasmic binding protein CYD28_RS10930 PF00633 Helix-hairpin-helix motif CYD28_RS10930 PF00730 HhH-GPD superfamily base excision DNA repair protein CYD28_RS10930 PF10576 Iron-sulfur binding domain of endonuclease III CYD28_RS10935 PF00750 tRNA synthetases class I (R) CYD28_RS10935 PF05746 DALR anticodon binding domain CYD28_RS10935 PF03485 Arginyl tRNA synthetase N terminal domain CYD28_RS10980 PF00872 Transposase, Mutator family CYD28_RS10985 PF00583 Acetyltransferase (GNAT) family CYD28_RS10990 PF01636 Phosphotransferase enzyme family CYD28_RS10995 PF00872 Transposase, Mutator family CYD28_RS11005 PF00005 ABC transporter CYD28_RS11010 PF00005 ABC transporter CYD28_RS11015 PF01636 Phosphotransferase enzyme family CYD28_RS11020 PF00239 Resolvase, N terminal domain CYD28_RS11020 PF02796 Helix-turn-helix domain of resolvase CYD28_RS11025 PF08360 QacR-like protein, C-terminal region CYD28_RS11025 PF00440 Bacterial regulatory proteins, tetR family CYD28_RS11030 PF07690 Major Facilitator Superfamily CYD28_RS11040 PF00872 Transposase, Mutator family CYD28_RS11070 PF01022 Bacterial regulatory protein, arsR family CYD28_RS11075 PF13610 DDE domain CYD28_RS11080 PF08741 YwhD family CYD28_RS11085 PF01966 HD domain CYD28_RS11095 PF03358 NADPH-dependent FMN reductase CYD28_RS11100 PF00248 Aldo/keto reductase family CYD28_RS11110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYD28_RS11110 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS11115 PF00313 'Cold-shock' DNA-binding domain CYD28_RS11120 PF07293 Protein of unknown function (DUF1450) CYD28_RS11125 PF13683 Integrase core domain CYD28_RS11125 PF01610 Transposase CYD28_RS11130 PF00288 GHMP kinases N terminal domain CYD28_RS11130 PF08544 GHMP kinases C terminal CYD28_RS11140 PF08544 GHMP kinases C terminal CYD28_RS11140 PF00288 GHMP kinases N terminal domain CYD28_RS11145 PF03099 Biotin/lipoate A/B protein ligase family CYD28_RS11150 PF01515 Phosphate acetyl/butaryl transferase CYD28_RS11155 PF06778 Chlorite dismutase CYD28_RS11160 PF06738 Putative threonine/serine exporter CYD28_RS11170 PF13520 Amino acid permease CYD28_RS11175 PF04241 Protein of unknown function (DUF423) CYD28_RS11185 PF03167 Uracil DNA glycosylase superfamily CYD28_RS11190 PF08543 Phosphomethylpyrimidine kinase CYD28_RS11195 PF17412 Family of unknown function CYD28_RS11215 PF02803 Thiolase, C-terminal domain CYD28_RS11215 PF00108 Thiolase, N-terminal domain CYD28_RS11220 PF00501 AMP-binding enzyme CYD28_RS11220 PF13193 AMP-binding enzyme C-terminal domain CYD28_RS11225 PF09587 Bacterial capsule synthesis protein PGA_cap CYD28_RS11270 PF00872 Transposase, Mutator family CYD28_RS11275 PF01380 SIS domain CYD28_RS11280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYD28_RS11290 PF02585 GlcNAc-PI de-N-acetylase CYD28_RS11295 PF02649 Type I GTP cyclohydrolase folE2 CYD28_RS11325 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CYD28_RS11325 PF17961 Bacterial Ig domain CYD28_RS11325 PF00746 LPXTG cell wall anchor motif CYD28_RS11325 PF17210 SdrD B-like domain CYD28_RS11325 PF04650 YSIRK type signal peptide CYD28_RS11325 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CYD28_RS11325 PF00746 LPXTG cell wall anchor motif CYD28_RS11325 PF17210 SdrD B-like domain CYD28_RS11325 PF04650 YSIRK type signal peptide CYD28_RS11325 PF17961 Bacterial Ig domain CYD28_RS11335 PF03358 NADPH-dependent FMN reductase CYD28_RS11345 PF14437 MafB19-like deaminase CYD28_RS11350 PF01712 Deoxynucleoside kinase CYD28_RS11355 PF01712 Deoxynucleoside kinase CYD28_RS11360 PF13419 Haloacid dehalogenase-like hydrolase CYD28_RS11375 PF00583 Acetyltransferase (GNAT) family CYD28_RS11400 PF01063 Amino-transferase class IV CYD28_RS11405 PF01370 NAD dependent epimerase/dehydratase family CYD28_RS11410 PF02872 5'-nucleotidase, C-terminal domain CYD28_RS11410 PF00149 Calcineurin-like phosphoesterase CYD28_RS11415 PF02423 Ornithine cyclodeaminase/mu-crystallin family CYD28_RS11420 PF00293 NUDIX domain CYD28_RS11420 PF13344 Haloacid dehalogenase-like hydrolase CYD28_RS11430 PF00155 Aminotransferase class I and II CYD28_RS11435 PF01546 Peptidase family M20/M25/M40 CYD28_RS11435 PF07687 Peptidase dimerisation domain CYD28_RS11440 PF03143 Elongation factor Tu C-terminal domain CYD28_RS11440 PF03144 Elongation factor Tu domain 2 CYD28_RS11440 PF00009 Elongation factor Tu GTP binding domain CYD28_RS11445 PF03144 Elongation factor Tu domain 2 CYD28_RS11445 PF00009 Elongation factor Tu GTP binding domain CYD28_RS11445 PF03764 Elongation factor G, domain IV CYD28_RS11445 PF14492 Elongation Factor G, domain II CYD28_RS11445 PF00679 Elongation factor G C-terminus CYD28_RS11450 PF00177 Ribosomal protein S7p/S5e CYD28_RS11455 PF00164 Ribosomal protein S12/S23 CYD28_RS11460 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CYD28_RS11465 PF04998 RNA polymerase Rpb1, domain 5 CYD28_RS11465 PF05000 RNA polymerase Rpb1, domain 4 CYD28_RS11465 PF00623 RNA polymerase Rpb1, domain 2 CYD28_RS11465 PF04997 RNA polymerase Rpb1, domain 1 CYD28_RS11465 PF04983 RNA polymerase Rpb1, domain 3 CYD28_RS11470 PF00562 RNA polymerase Rpb2, domain 6 CYD28_RS11470 PF10385 RNA polymerase beta subunit external 1 domain CYD28_RS11470 PF04565 RNA polymerase Rpb2, domain 3 CYD28_RS11470 PF04560 RNA polymerase Rpb2, domain 7 CYD28_RS11470 PF04561 RNA polymerase Rpb2, domain 2 CYD28_RS11470 PF04563 RNA polymerase beta subunit CYD28_RS11475 PF05175 Methyltransferase small domain CYD28_RS11480 PF16320 Ribosomal protein L7/L12 dimerisation domain CYD28_RS11480 PF00542 Ribosomal protein L7/L12 C-terminal domain CYD28_RS11485 PF00466 Ribosomal protein L10 CYD28_RS11490 PF13683 Integrase core domain CYD28_RS11490 PF01610 Transposase CYD28_RS11495 PF00687 Ribosomal protein L1p/L10e family CYD28_RS11500 PF03946 Ribosomal protein L11, N-terminal domain CYD28_RS11500 PF00298 Ribosomal protein L11, RNA binding domain CYD28_RS11505 PF02357 Transcription termination factor nusG CYD28_RS11510 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CYD28_RS11515 PF00471 Ribosomal protein L33 CYD28_RS11525 PF05991 YacP-like NYN domain CYD28_RS11530 PF00588 SpoU rRNA Methylase family CYD28_RS11530 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYD28_RS11535 PF00636 Ribonuclease III domain CYD28_RS11540 PF09190 DALR domain CYD28_RS11540 PF01406 tRNA synthetases class I (C) catalytic domain CYD28_RS11545 PF00132 Bacterial transferase hexapeptide (six repeats) CYD28_RS11550 PF00749 tRNA synthetases class I (E and Q), catalytic domain CYD28_RS11560 PF18073 Rubredoxin metal binding domain CYD28_RS11565 PF17871 AAA lid domain CYD28_RS11565 PF02861 Clp amino terminal domain, pathogenicity island component CYD28_RS11565 PF07724 AAA domain (Cdc48 subfamily) CYD28_RS11565 PF00004 ATPase family associated with various cellular activities (AAA) CYD28_RS11565 PF10431 C-terminal, D2-small domain, of ClpB protein CYD28_RS11570 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CYD28_RS11575 PF02151 UvrB/uvrC motif CYD28_RS11580 PF05848 CtsR N-terminal HTH domain CYD28_RS11580 PF17727 CtsR C-terminal dimerization domain CYD28_RS11585 PF01773 Na+ dependent nucleoside transporter N-terminus CYD28_RS11585 PF07662 Na+ dependent nucleoside transporter C-terminus CYD28_RS11590 PF01174 SNO glutamine amidotransferase family CYD28_RS11595 PF01680 SOR/SNZ family CYD28_RS11600 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS11600 PF00155 Aminotransferase class I and II CYD28_RS11605 PF07681 DoxX CYD28_RS11690 PF01336 OB-fold nucleic acid binding domain CYD28_RS11690 PF00152 tRNA synthetases class II (D, K and N) CYD28_RS11695 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CYD28_RS11700 PF02152 Dihydroneopterin aldolase CYD28_RS11705 PF00809 Pterin binding enzyme CYD28_RS11710 PF00291 Pyridoxal-phosphate dependent enzyme CYD28_RS11715 PF01430 Hsp33 protein CYD28_RS11720 PF01434 Peptidase family M41 CYD28_RS11720 PF06480 FtsH Extracellular CYD28_RS11720 PF17862 AAA+ lid domain CYD28_RS11720 PF00004 ATPase family associated with various cellular activities (AAA) CYD28_RS11725 PF00156 Phosphoribosyl transferase domain CYD28_RS11730 PF01171 PP-loop family CYD28_RS11730 PF11734 TilS substrate C-terminal domain CYD28_RS11735 PF00575 S1 RNA binding domain CYD28_RS11745 PF01479 S4 domain CYD28_RS11750 PF03819 MazG nucleotide pyrophosphohydrolase domain CYD28_RS11750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYD28_RS11755 PF14667 Polysaccharide biosynthesis C-terminal domain CYD28_RS11755 PF01943 Polysaccharide biosynthesis protein CYD28_RS11760 PF03461 TRCF domain CYD28_RS11760 PF00271 Helicase conserved C-terminal domain CYD28_RS11760 PF17757 UvrB interaction domain CYD28_RS11760 PF02559 CarD-like/TRCF domain CYD28_RS11760 PF00270 DEAD/DEAH box helicase CYD28_RS11765 PF01195 Peptidyl-tRNA hydrolase CYD28_RS11770 PF14693 Ribosomal protein TL5, C-terminal domain CYD28_RS11770 PF01386 Ribosomal L25p family CYD28_RS11775 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CYD28_RS11775 PF14572 Phosphoribosyl synthetase-associated domain CYD28_RS11780 PF00132 Bacterial transferase hexapeptide (six repeats) CYD28_RS11780 PF00483 Nucleotidyl transferase CYD28_RS11785 PF04026 SpoVG CYD28_RS11790 PF01042 Endoribonuclease L-PSP CYD28_RS11795 PF00156 Phosphoribosyl transferase domain CYD28_RS11795 PF09182 Bacterial purine repressor, N-terminal CYD28_RS11800 PF08544 GHMP kinases C terminal CYD28_RS11800 PF00288 GHMP kinases N terminal domain CYD28_RS11805 PF06257 Biofilm formation stimulator VEG CYD28_RS11810 PF00398 Ribosomal RNA adenine dimethylase CYD28_RS11815 PF13331 Domain of unknown function (DUF4093) CYD28_RS11815 PF01751 Toprim domain CYD28_RS11820 PF01026 TatD related DNase CYD28_RS11825 PF08264 Anticodon-binding domain of tRNA CYD28_RS11825 PF01588 Putative tRNA binding domain CYD28_RS11825 PF09334 tRNA synthetases class I (M) CYD28_RS11830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYD28_RS11835 PF01541 GIY-YIG catalytic domain CYD28_RS11840 PF05175 Methyltransferase small domain CYD28_RS11845 PF06156 Initiation control protein YabA CYD28_RS11850 PF04468 PSP1 C-terminal conserved region CYD28_RS11855 PF09115 DNA polymerase III, delta subunit, C terminal CYD28_RS11860 PF06153 Cyclic-di-AMP receptor CYD28_RS11865 PF02223 Thymidylate kinase CYD28_RS11870 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CYD28_RS11870 PF01276 Orn/Lys/Arg decarboxylase, major domain CYD28_RS11875 PF13302 Acetyltransferase (GNAT) domain CYD28_RS11895 PF02132 RecR protein CYD28_RS11895 PF13662 Toprim domain CYD28_RS11900 PF02575 YbaB/EbfC DNA-binding family CYD28_RS11905 PF12169 DNA polymerase III subunits gamma and tau domain III CYD28_RS11920 PF00392 Bacterial regulatory proteins, gntR family CYD28_RS11920 PF07702 UTRA domain CYD28_RS11925 PF00128 Alpha amylase, catalytic domain CYD28_RS11925 PF16657 Maltogenic Amylase, C-terminal domain CYD28_RS11930 PF02378 Phosphotransferase system, EIIC CYD28_RS11930 PF00367 phosphotransferase system, EIIB CYD28_RS11940 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CYD28_RS11940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS11945 PF04898 Glutamate synthase central domain CYD28_RS11945 PF00310 Glutamine amidotransferases class-II CYD28_RS11945 PF01645 Conserved region in glutamate synthase CYD28_RS11945 PF01493 GXGXG motif CYD28_RS11970 PF00293 NUDIX domain CYD28_RS11980 PF05257 CHAP domain CYD28_RS11980 PF01476 LysM domain CYD28_RS11985 PF01053 Cys/Met metabolism PLP-dependent enzyme CYD28_RS11990 PF00291 Pyridoxal-phosphate dependent enzyme CYD28_RS12005 PF00209 Sodium:neurotransmitter symporter family CYD28_RS12020 PF12146 Serine aminopeptidase, S33 CYD28_RS12030 PF01569 PAP2 superfamily CYD28_RS12040 PF10057 Uncharacterized conserved protein (DUF2294) CYD28_RS12045 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CYD28_RS12050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CYD28_RS12050 PF00361 Proton-conducting membrane transporter CYD28_RS12060 PF06993 Protein of unknown function (DUF1304) CYD28_RS12070 PF13673 Acetyltransferase (GNAT) domain CYD28_RS12075 PF02386 Cation transport protein CYD28_RS12085 PF03592 Terminase small subunit CYD28_RS12085 PF10668 Phage terminase small subunit CYD28_RS12100 PF13610 DDE domain CYD28_RS12105 PF01051 Initiator Replication protein CYD28_RS12115 PF13610 DDE domain CYD28_RS12140 PF01636 Phosphotransferase enzyme family CYD28_RS12145 PF00583 Acetyltransferase (GNAT) family CYD28_RS12165 PF13610 DDE domain CYD28_RS12170 PF01719 Plasmid replication protein CYD28_RS12175 PF00893 Small Multidrug Resistance protein CYD28_RS12180 PF13610 DDE domain CYD28_RS12190 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CYD28_RS12195 PF05569 BlaR1 peptidase M56 CYD28_RS12195 PF00905 Penicillin binding protein transpeptidase domain CYD28_RS12200 PF03965 Penicillinase repressor CYD28_RS12205 PF02796 Helix-turn-helix domain of resolvase CYD28_RS12205 PF00239 Resolvase, N terminal domain CYD28_RS12210 PF00171 Aldehyde dehydrogenase family CYD28_RS12220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CYD28_RS12275 PF01810 LysE type translocator CYD28_RS12280 PF00300 Histidine phosphatase superfamily (branch 1) CYD28_RS12290 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYD28_RS12290 PF13192 Thioredoxin domain CYD28_RS12295 PF00578 AhpC/TSA family CYD28_RS12305 PF00881 Nitroreductase family CYD28_RS12310 PF00375 Sodium:dicarboxylate symporter family CYD28_RS12325 PF11181 Heat induced stress protein YflT CYD28_RS12335 PF00860 Permease family CYD28_RS12340 PF00571 CBS domain CYD28_RS12340 PF00478 IMP dehydrogenase / GMP reductase domain CYD28_RS12345 PF00958 GMP synthase C terminal domain CYD28_RS12345 PF00117 Glutamine amidotransferase class-I CYD28_RS12350 PF00589 Phage integrase family CYD28_RS12350 PF14659 Phage integrase, N-terminal SAM-like domain CYD28_RS12370 PF13610 DDE domain CYD28_RS12395 PF13683 Integrase core domain CYD28_RS12395 PF01610 Transposase CYD28_RS12420 PF01084 Ribosomal protein S18 CYD28_RS12425 PF00436 Single-strand binding protein family CYD28_RS12430 PF01250 Ribosomal protein S6 CYD28_RS12445 PF01926 50S ribosome-binding GTPase CYD28_RS12445 PF06071 Protein of unknown function (DUF933) CYD28_RS12450 PF06107 Bacterial protein of unknown function (DUF951) CYD28_RS12455 PF00924 Mechanosensitive ion channel CYD28_RS12460 PF02195 ParB-like nuclease domain CYD28_RS12460 PF17762 HTH domain found in ParB protein CYD28_RS12465 PF01053 Cys/Met metabolism PLP-dependent enzyme CYD28_RS12470 PF01053 Cys/Met metabolism PLP-dependent enzyme CYD28_RS12475 PF02219 Methylenetetrahydrofolate reductase CYD28_RS12475 PF02574 Homocysteine S-methyltransferase CYD28_RS12480 PF08267 Cobalamin-independent synthase, N-terminal domain CYD28_RS12480 PF01717 Cobalamin-independent synthase, Catalytic domain CYD28_RS12495 PF12848 ABC transporter CYD28_RS12495 PF16326 ABC transporter C-terminal domain CYD28_RS12495 PF00005 ABC transporter CYD28_RS12505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYD28_RS12510 PF13302 Acetyltransferase (GNAT) domain CYD28_RS12525 PF10502 Signal peptidase, peptidase S26 CYD28_RS12535 PF00005 ABC transporter CYD28_RS12540 PF02687 FtsX-like permease family CYD28_RS12550 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CYD28_RS12550 PF04650 YSIRK type signal peptide CYD28_RS12550 PF17210 SdrD B-like domain CYD28_RS12550 PF00746 LPXTG cell wall anchor motif CYD28_RS12550 PF17961 Bacterial Ig domain CYD28_RS12575 PF17762 HTH domain found in ParB protein CYD28_RS12575 PF02195 ParB-like nuclease domain CYD28_RS12580 PF02527 rRNA small subunit methyltransferase G CYD28_RS12585 PF13932 GidA associated domain CYD28_RS12585 PF01134 Glucose inhibited division protein A CYD28_RS12590 PF10396 GTP-binding protein TrmE N-terminus CYD28_RS12590 PF12631 MnmE helical domain CYD28_RS12590 PF01926 50S ribosome-binding GTPase CYD28_RS12595 PF00825 Ribonuclease P CYD28_RS12600 PF00468 Ribosomal protein L34 CYD28_RS12635 PF01022 Bacterial regulatory protein, arsR family CYD28_RS12655 PF13977 BetI-type transcriptional repressor, C-terminal CYD28_RS12655 PF00440 Bacterial regulatory proteins, tetR family CYD28_RS12660 PF02796 Helix-turn-helix domain of resolvase CYD28_RS12660 PF00239 Resolvase, N terminal domain CYD28_RS12665 PF00665 Integrase core domain CYD28_RS12665 PF09299 Mu transposase, C-terminal CYD28_RS12670 PF13401 AAA domain CYD28_RS12675 PF02796 Helix-turn-helix domain of resolvase CYD28_RS12675 PF00239 Resolvase, N terminal domain CYD28_RS12690 PF01381 Helix-turn-helix CYD28_RS12725 PF05732 Firmicute plasmid replication protein (RepL)