CYD28_RS00005 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CYD28_RS00010 SM00480 DNA polymerase III beta subunit CYD28_RS00025 SM00387 Histidine kinase-like ATPases CYD28_RS00025 SM00433 TopoisomeraseII CYD28_RS00030 SM00434 DNA Topoisomerase IV CYD28_RS00065 SM00267 diguanylate cyclase CYD28_RS00080 SM00788 Adenylosuccinate synthetase CYD28_RS00095 SM00448 cheY-homologous receiver domain CYD28_RS00095 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS00100 SM00091 PAS domain CYD28_RS00100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYD28_RS00100 SM00387 Histidine kinase-like ATPases CYD28_RS00100 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS00115 SM00849 Metallo-beta-lactamase superfamily CYD28_RS00140 SM00487 DEAD-like helicases superfamily CYD28_RS00140 SM00490 helicase superfamily c-terminal domain CYD28_RS00190 SM00857 Resolvase, N terminal domain CYD28_RS00210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS00225 SM00450 Rhodanese Homology Domain CYD28_RS00225 SM00849 Metallo-beta-lactamase superfamily CYD28_RS00230 SM00450 Rhodanese Homology Domain CYD28_RS00310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS00315 SM00226 Low molecular weight phosphatase family CYD28_RS00325 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS00395 SM00422 helix_turn_helix, mercury resistance CYD28_RS00410 SM00829 Enoylreductase CYD28_RS00425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS00430 SM00226 Low molecular weight phosphatase family CYD28_RS00440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS00500 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS00505 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00545 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00550 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYD28_RS00585 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00590 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00615 SM00422 helix_turn_helix, mercury resistance CYD28_RS00625 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS00655 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00710 SM00354 helix_turn _helix lactose operon repressor CYD28_RS00725 SM00382 ATPases associated with a variety of cellular activities CYD28_RS00820 SM00534 ATPase domain of DNA mismatch repair MUTS family CYD28_RS00900 SM00829 Enoylreductase CYD28_RS00905 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS00945 SM00861 Transketolase, pyrimidine binding domain CYD28_RS01065 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS01075 SM00422 helix_turn_helix, mercury resistance CYD28_RS01100 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS01125 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS01145 SM00506 Appr-1"-p processing enzyme CYD28_RS01165 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS01165 SM00876 Biotin and Thiamin Synthesis associated domain CYD28_RS01230 SM01130 CYD28_RS01230 CYD28_RS01260 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01265 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01315 SM00450 Rhodanese Homology Domain CYD28_RS01350 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01365 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01375 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS01405 SM00062 Bacterial periplasmic substrate-binding proteins CYD28_RS01410 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01465 SM00957 SecA DEAD-like domain CYD28_RS01465 SM00958 SecA preprotein cross-linking domain CYD28_RS01480 SM00387 Histidine kinase-like ATPases CYD28_RS01485 SM00448 cheY-homologous receiver domain CYD28_RS01485 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS01570 SM00047 Lysozyme subfamily 2 CYD28_RS01625 SM00354 helix_turn _helix lactose operon repressor CYD28_RS01635 SM00829 Enoylreductase CYD28_RS01645 SM00854 Bacterial capsule synthesis protein PGA_cap CYD28_RS01655 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS01740 SM00984 UDP binding domain CYD28_RS01755 SM00098 Alkaline phosphatase homologues CYD28_RS01760 SM00448 cheY-homologous receiver domain CYD28_RS01760 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS01765 SM00387 Histidine kinase-like ATPases CYD28_RS01770 SM00382 ATPases associated with a variety of cellular activities CYD28_RS01880 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS01945 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYD28_RS01945 SM00866 CYD28_RS01945 CYD28_RS02190 SM01266 CYD28_RS02190 CYD28_RS02290 SM00829 Enoylreductase CYD28_RS02325 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS02345 SM00854 Bacterial capsule synthesis protein PGA_cap CYD28_RS02410 SM00062 Bacterial periplasmic substrate-binding proteins CYD28_RS02435 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS02520 SM00954 Region found in RelA / SpoT proteins CYD28_RS02530 SM00422 helix_turn_helix, mercury resistance CYD28_RS02535 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYD28_RS02535 SM00895 CYD28_RS02535 CYD28_RS02645 SM00382 ATPases associated with a variety of cellular activities CYD28_RS02655 SM00387 Histidine kinase-like ATPases CYD28_RS02655 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS02660 SM00448 cheY-homologous receiver domain CYD28_RS02660 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS02690 SM00829 Enoylreductase CYD28_RS02695 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS02695 SM00382 ATPases associated with a variety of cellular activities CYD28_RS02725 SM00448 cheY-homologous receiver domain CYD28_RS02725 SM00850 LytTr DNA-binding domain CYD28_RS02730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CYD28_RS02730 SM00387 Histidine kinase-like ATPases CYD28_RS02790 SM00871 Bacterial transcription activator, effector binding domain CYD28_RS02840 SM00855 Phosphoglycerate mutase family CYD28_RS02855 SM00062 Bacterial periplasmic substrate-binding proteins CYD28_RS02855 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CYD28_RS02865 SM00382 ATPases associated with a variety of cellular activities CYD28_RS02890 SM00867 YceI-like domain CYD28_RS02930 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CYD28_RS02955 SM00387 Histidine kinase-like ATPases CYD28_RS02960 SM00421 helix_turn_helix, Lux Regulon CYD28_RS02960 SM00448 cheY-homologous receiver domain CYD28_RS02975 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS03005 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS03035 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS03070 SM00829 Enoylreductase CYD28_RS03130 SM00850 LytTr DNA-binding domain CYD28_RS03135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYD28_RS03135 SM00387 Histidine kinase-like ATPases CYD28_RS03135 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS03140 SM00448 cheY-homologous receiver domain CYD28_RS03140 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS03150 SM00382 ATPases associated with a variety of cellular activities CYD28_RS03160 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS03230 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS03290 SM00903 Flavin reductase like domain CYD28_RS03375 SM00420 helix_turn_helix, Deoxyribose operon repressor CYD28_RS03390 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CYD28_RS03390 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CYD28_RS03405 SM00047 Lysozyme subfamily 2 CYD28_RS03470 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS03530 SM00382 ATPases associated with a variety of cellular activities CYD28_RS03540 SM00852 Probable molybdopterin binding domain CYD28_RS03550 SM00852 Probable molybdopterin binding domain CYD28_RS03575 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS03590 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS03640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CYD28_RS03640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CYD28_RS03640 SM00493 CYD28_RS03640 CYD28_RS03655 SM01403 CYD28_RS03655 CYD28_RS03675 SM01382 CYD28_RS03675 CYD28_RS03675 SM01383 CYD28_RS03675 CYD28_RS03690 SM00322 K homology RNA-binding domain CYD28_RS03710 SM01374 CYD28_RS03710 CYD28_RS03715 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYD28_RS03770 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS03790 SM00662 RNA polymerases D CYD28_RS03800 SM00382 ATPases associated with a variety of cellular activities CYD28_RS03805 SM00382 ATPases associated with a variety of cellular activities CYD28_RS03835 SM00420 helix_turn_helix, Deoxyribose operon repressor CYD28_RS03835 SM01134 CYD28_RS03835 CYD28_RS03860 SM01133 CYD28_RS03860 CYD28_RS03890 SM00829 Enoylreductase CYD28_RS04075 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS04150 SM01133 CYD28_RS04150 CYD28_RS04155 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CYD28_RS04235 SM00357 Cold shock protein domain CYD28_RS04235 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04235 SM00959 Rho termination factor, N-terminal domain CYD28_RS04250 SM00937 CYD28_RS04250 CYD28_RS04265 SM00226 Low molecular weight phosphatase family CYD28_RS04325 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS04400 SM00155 Phospholipase D. Active site motifs. CYD28_RS04440 SM00487 DEAD-like helicases superfamily CYD28_RS04440 SM00490 helicase superfamily c-terminal domain CYD28_RS04465 SM01005 Alanine racemase, C-terminal domain CYD28_RS04480 SM00331 Sigma factor PP2C-like phosphatases CYD28_RS04480 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CYD28_RS04500 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS04500 SM00732 Likely ribonuclease with RNase H fold. CYD28_RS04505 SM00731 SprT homologues. CYD28_RS04555 SM01329 CYD28_RS04555 CYD28_RS04560 SM00917 LeuA allosteric (dimerisation) domain CYD28_RS04605 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04610 SM00881 CoA binding domain CYD28_RS04630 SM00354 helix_turn _helix lactose operon repressor CYD28_RS04635 SM00640 Glycosyl hydrolases family 32 CYD28_RS04645 SM00448 cheY-homologous receiver domain CYD28_RS04645 SM00850 LytTr DNA-binding domain CYD28_RS04655 SM00794 Staphylococcal AgrD protein CYD28_RS04660 SM00793 Accessory gene regulator B CYD28_RS04685 SM00883 Chaperonin 10 Kd subunit CYD28_RS04755 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYD28_RS04760 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04770 SM00382 ATPases associated with a variety of cellular activities CYD28_RS04820 SM01131 CYD28_RS04820 CYD28_RS04830 SM00710 Parallel beta-helix repeats CYD28_RS04865 SM00998 Adenylosuccinate lyase C-terminus CYD28_RS04885 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYD28_RS04885 SM00292 breast cancer carboxy-terminal domain CYD28_RS04885 SM00532 Ligase N family CYD28_RS04910 SM00845 GatB domain CYD28_RS04915 SM00046 Diacylglycerol kinase catalytic domain (presumed) CYD28_RS04935 SM00479 CYD28_RS04935 CYD28_RS04985 SM00387 Histidine kinase-like ATPases CYD28_RS04990 SM00421 helix_turn_helix, Lux Regulon CYD28_RS04990 SM00448 cheY-homologous receiver domain CYD28_RS05005 SM00226 Low molecular weight phosphatase family CYD28_RS05075 SM00478 endonuclease III CYD28_RS05085 SM00382 ATPases associated with a variety of cellular activities CYD28_RS05270 SM00062 Bacterial periplasmic substrate-binding proteins CYD28_RS05270 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CYD28_RS05275 SM00382 ATPases associated with a variety of cellular activities CYD28_RS05280 SM00567 E-Z type HEAT repeats CYD28_RS05320 SM00421 helix_turn_helix, Lux Regulon CYD28_RS05320 SM00448 cheY-homologous receiver domain CYD28_RS05325 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS05350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS05375 SM00382 ATPases associated with a variety of cellular activities CYD28_RS05475 SM01234 CYD28_RS05475 CYD28_RS05550 SM00047 Lysozyme subfamily 2 CYD28_RS05605 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS05615 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS05630 SM00450 Rhodanese Homology Domain CYD28_RS05655 SM00363 S4 RNA-binding domain CYD28_RS05690 SM00849 Metallo-beta-lactamase superfamily CYD28_RS05720 SM00843 CYD28_RS05720 CYD28_RS05740 SM00830 Chorismate mutase type II CYD28_RS05745 SM00354 helix_turn _helix lactose operon repressor CYD28_RS05790 SM00363 S4 RNA-binding domain CYD28_RS05795 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS05805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYD28_RS05810 SM00563 Phosphate acyltransferases CYD28_RS05845 SM00363 S4 RNA-binding domain CYD28_RS05845 SM01390 CYD28_RS05845 CYD28_RS05870 SM00981 CYD28_RS05870 CYD28_RS05900 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CYD28_RS05900 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CYD28_RS05910 SM00849 Metallo-beta-lactamase superfamily CYD28_RS05920 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS05930 SM00481 DNA polymerase alpha chain like domain CYD28_RS05935 SM00919 Malic enzyme, NAD binding domain CYD28_RS05935 SM01274 CYD28_RS05935 CYD28_RS05975 SM01329 CYD28_RS05975 CYD28_RS05980 SM00448 cheY-homologous receiver domain CYD28_RS05980 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS05985 SM00091 PAS domain CYD28_RS05985 SM00387 Histidine kinase-like ATPases CYD28_RS05985 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS05990 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CYD28_RS05990 SM00474 3'-5' exonuclease CYD28_RS05990 SM00475 5'-3' exonuclease CYD28_RS05990 SM00482 DNA polymerase A domain CYD28_RS05995 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CYD28_RS05995 SM01232 CYD28_RS05995 CYD28_RS06005 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYD28_RS06025 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS06065 SM00382 ATPases associated with a variety of cellular activities CYD28_RS06065 SM00994 ClpX C4-type zinc finger CYD28_RS06065 SM01086 C-terminal, D2-small domain, of ClpB protein CYD28_RS06100 SM01004 Delta-aminolevulinic acid dehydratase CYD28_RS06195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYD28_RS06200 SM00382 ATPases associated with a variety of cellular activities CYD28_RS06215 SM01323 CYD28_RS06215 CYD28_RS06235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS06235 SM00954 Region found in RelA / SpoT proteins CYD28_RS06245 SM00287 Bacterial SH3 domain homologues CYD28_RS06245 SM00646 CYD28_RS06245 CYD28_RS06270 SM00382 ATPases associated with a variety of cellular activities CYD28_RS06295 SM00028 Tetratricopeptide repeats CYD28_RS06300 SM00382 ATPases associated with a variety of cellular activities CYD28_RS06305 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CYD28_RS06315 SM00732 Likely ribonuclease with RNase H fold. CYD28_RS06350 SM00796 Allophanate hydrolase subunit 1 CYD28_RS06355 SM00797 Allophanate hydrolase subunit 2 CYD28_RS06365 SM00878 Biotin carboxylase C-terminal domain CYD28_RS06400 SM01103 CYD28_RS06400 CYD28_RS06410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS06425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYD28_RS06435 SM00849 Metallo-beta-lactamase superfamily CYD28_RS06455 SM00838 Elongation factor G C-terminus CYD28_RS06460 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS06480 SM00271 DnaJ molecular chaperone homology domain CYD28_RS06495 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS06555 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS06565 SM00400 zinc finger CYD28_RS06565 SM00493 CYD28_RS06565 CYD28_RS06585 SM00487 DEAD-like helicases superfamily CYD28_RS06585 SM00490 helicase superfamily c-terminal domain CYD28_RS06590 SM00518 AP endonuclease family 2 CYD28_RS06595 SM00382 ATPases associated with a variety of cellular activities CYD28_RS06655 SM00849 Metallo-beta-lactamase superfamily CYD28_RS06715 SM00450 Rhodanese Homology Domain CYD28_RS06740 SM00841 Elongation factor P, C-terminal CYD28_RS06740 SM01185 CYD28_RS06740 CYD28_RS06750 SM00878 Biotin carboxylase C-terminal domain CYD28_RS06800 SM00861 Transketolase, pyrimidine binding domain CYD28_RS06830 SM01350 CYD28_RS06830 CYD28_RS06835 SM00354 helix_turn _helix lactose operon repressor CYD28_RS06840 SM00642 Alpha-amylase domain CYD28_RS06845 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS06845 SM00871 Bacterial transcription activator, effector binding domain CYD28_RS06865 SM00822 CYD28_RS06865 CYD28_RS06915 SM00448 cheY-homologous receiver domain CYD28_RS06915 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS06920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CYD28_RS06920 SM00387 Histidine kinase-like ATPases CYD28_RS06920 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS06940 SM00487 DEAD-like helicases superfamily CYD28_RS06940 SM00490 helicase superfamily c-terminal domain CYD28_RS06945 SM00257 Lysin motif CYD28_RS06960 SM00870 CYD28_RS06960 CYD28_RS06970 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS06985 SM00411 bacterial (prokaryotic) histone like domain CYD28_RS07010 SM00562 CYD28_RS07010 CYD28_RS07035 SM00914 CYD28_RS07035 CYD28_RS07070 SM00479 CYD28_RS07070 CYD28_RS07070 SM00491 CYD28_RS07070 CYD28_RS07085 SM00478 endonuclease III CYD28_RS07085 SM00525 CYD28_RS07085 CYD28_RS07125 SM00981 CYD28_RS07125 CYD28_RS07140 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CYD28_RS07140 SM00475 5'-3' exonuclease CYD28_RS07175 SM00932 Scaffold protein Nfu/NifU N terminal CYD28_RS07180 SM00567 E-Z type HEAT repeats CYD28_RS07180 SM00932 Scaffold protein Nfu/NifU N terminal CYD28_RS07225 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYD28_RS07225 SM00245 tail specific protease CYD28_RS07240 SM00014 Acid phosphatase homologues CYD28_RS07245 SM00448 cheY-homologous receiver domain CYD28_RS07245 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS07250 SM00387 Histidine kinase-like ATPases CYD28_RS07250 SM00388 His Kinase A (phosphoacceptor) domain CYD28_RS07255 SM00861 Transketolase, pyrimidine binding domain CYD28_RS07280 SM00382 ATPases associated with a variety of cellular activities CYD28_RS07285 SM00327 von Willebrand factor (vWF) type A domain CYD28_RS07315 SM00357 Cold shock protein domain CYD28_RS07330 SM01005 Alanine racemase, C-terminal domain CYD28_RS07350 SM01130 CYD28_RS07350 CYD28_RS07355 SM00859 Semialdehyde dehydrogenase, NAD binding domain CYD28_RS07365 SM00382 ATPases associated with a variety of cellular activities CYD28_RS07390 SM00382 ATPases associated with a variety of cellular activities CYD28_RS07510 SM01061 CAT RNA binding domain CYD28_RS07520 SM00434 DNA Topoisomerase IV CYD28_RS07525 SM00387 Histidine kinase-like ATPases CYD28_RS07525 SM00433 TopoisomeraseII CYD28_RS07530 SM01207 CYD28_RS07530 CYD28_RS07580 SM00861 Transketolase, pyrimidine binding domain CYD28_RS07605 SM01240 CYD28_RS07605 CYD28_RS07620 SM01060 CYD28_RS07620 CYD28_RS07670 SM00318 Staphylococcal nuclease homologues CYD28_RS07685 SM00421 helix_turn_helix, Lux Regulon CYD28_RS07685 SM00448 cheY-homologous receiver domain CYD28_RS07700 SM00382 ATPases associated with a variety of cellular activities CYD28_RS07705 SM00155 Phospholipase D. Active site motifs. CYD28_RS07770 SM00644 CYD28_RS07770 CYD28_RS07875 SM00507 HNH nucleases CYD28_RS07910 SM00497 Intron encoded nuclease repeat motif CYD28_RS07995 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS08000 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS08025 SM01230 CYD28_RS08025 CYD28_RS08030 SM00422 helix_turn_helix, mercury resistance CYD28_RS08085 SM00853 MutL C terminal dimerisation domain CYD28_RS08085 SM01340 CYD28_RS08085 CYD28_RS08090 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYD28_RS08090 SM00534 ATPase domain of DNA mismatch repair MUTS family CYD28_RS08105 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS08140 SM00322 K homology RNA-binding domain CYD28_RS08140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS08165 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08170 SM00852 Probable molybdopterin binding domain CYD28_RS08205 SM00866 CYD28_RS08205 CYD28_RS08210 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08210 SM00843 CYD28_RS08210 CYD28_RS08215 SM00849 Metallo-beta-lactamase superfamily CYD28_RS08220 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS08220 SM00322 K homology RNA-binding domain CYD28_RS08225 SM01387 CYD28_RS08225 CYD28_RS08230 SM00904 Riboflavin kinase CYD28_RS08260 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS08260 SM00322 K homology RNA-binding domain CYD28_RS08270 SM00479 CYD28_RS08270 CYD28_RS08270 SM00481 DNA polymerase alpha chain like domain CYD28_RS08320 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08320 SM01086 C-terminal, D2-small domain, of ClpB protein CYD28_RS08340 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CYD28_RS08340 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CYD28_RS08340 SM00493 CYD28_RS08340 CYD28_RS08355 SM00881 CoA binding domain CYD28_RS08405 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08405 SM00962 SRP54-type protein, GTPase domain CYD28_RS08405 SM00963 SRP54-type protein, helical bundle domain CYD28_RS08415 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08415 SM00962 SRP54-type protein, GTPase domain CYD28_RS08415 SM00963 SRP54-type protein, helical bundle domain CYD28_RS08420 SM00968 SMC proteins Flexible Hinge Domain CYD28_RS08425 SM00358 Double-stranded RNA binding motif CYD28_RS08425 SM00535 Ribonuclease III family CYD28_RS08435 SM00822 CYD28_RS08435 CYD28_RS08440 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CYD28_RS08455 SM00487 DEAD-like helicases superfamily CYD28_RS08455 SM00490 helicase superfamily c-terminal domain CYD28_RS08460 SM00318 Staphylococcal nuclease homologues CYD28_RS08460 SM00894 Excalibur calcium-binding domain CYD28_RS08465 SM01120 CYD28_RS08465 CYD28_RS08465 SM01121 CYD28_RS08465 CYD28_RS08480 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CYD28_RS08495 SM00220 Serine/Threonine protein kinases, catalytic domain CYD28_RS08495 SM00740 CYD28_RS08495 CYD28_RS08500 SM00331 Sigma factor PP2C-like phosphatases CYD28_RS08500 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CYD28_RS08530 SM00487 DEAD-like helicases superfamily CYD28_RS08530 SM00490 helicase superfamily c-terminal domain CYD28_RS08540 SM01409 CYD28_RS08540 CYD28_RS08545 SM00072 Guanylate kinase homologues. CYD28_RS08570 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CYD28_RS08575 SM00851 MGS-like domain CYD28_RS08575 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CYD28_RS08575 SM01209 CYD28_RS08575 CYD28_RS08580 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CYD28_RS08605 SM00363 S4 RNA-binding domain CYD28_RS08640 SM00363 S4 RNA-binding domain CYD28_RS08665 SM00864 Tubulin/FtsZ family, GTPase domain CYD28_RS08665 SM00865 Tubulin/FtsZ family, C-terminal domain CYD28_RS08670 SM00842 Cell division protein FtsA CYD28_RS08690 SM00740 CYD28_RS08690 CYD28_RS08785 SM00465 GIY-YIG type nucleases (URI domain) CYD28_RS08795 SM00463 Small MutS-related domain CYD28_RS08795 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CYD28_RS08795 SM00534 ATPase domain of DNA mismatch repair MUTS family CYD28_RS08800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYD28_RS08800 SM00481 DNA polymerase alpha chain like domain CYD28_RS08800 SM00483 DNA polymerase X family CYD28_RS08820 SM00873 B3/4 domain CYD28_RS08820 SM00874 tRNA synthetase B5 domain CYD28_RS08820 SM00896 Ferredoxin-fold anticodon binding domain CYD28_RS08830 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYD28_RS08905 SM00878 Biotin carboxylase C-terminal domain CYD28_RS08930 SM00838 Elongation factor G C-terminus CYD28_RS08980 SM00382 ATPases associated with a variety of cellular activities CYD28_RS08985 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS09005 SM00861 Transketolase, pyrimidine binding domain CYD28_RS09030 SM00849 Metallo-beta-lactamase superfamily CYD28_RS09110 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09120 SM01209 CYD28_RS09120 CYD28_RS09120 SM01210 CYD28_RS09120 CYD28_RS09125 SM00798 AICARFT/IMPCHase bienzyme CYD28_RS09125 SM00851 MGS-like domain CYD28_RS09150 SM01211 CYD28_RS09150 CYD28_RS09170 SM01001 AIR carboxylase CYD28_RS09245 SM00047 Lysozyme subfamily 2 CYD28_RS09245 SM00644 CYD28_RS09245 CYD28_RS09250 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS09305 SM00914 CYD28_RS09305 CYD28_RS09370 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CYD28_RS09435 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS09435 SM00924 MgtE intracellular N domain CYD28_RS09450 SM00954 Region found in RelA / SpoT proteins CYD28_RS09460 SM01118 CYD28_RS09460 CYD28_RS09510 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09515 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09535 SM00825 Beta-ketoacyl synthase CYD28_RS09550 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09550 SM01086 C-terminal, D2-small domain, of ClpB protein CYD28_RS09635 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CYD28_RS09650 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS09660 SM01298 CYD28_RS09660 CYD28_RS09805 SM00729 Elongator protein 3, MiaB family, Radical SAM CYD28_RS09855 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09885 SM00382 ATPases associated with a variety of cellular activities CYD28_RS09885 SM00930 CYD28_RS09885 CYD28_RS09895 SM00493 CYD28_RS09895 CYD28_RS09940 SM00855 Phosphoglycerate mutase family CYD28_RS10020 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS10020 SM00357 Cold shock protein domain CYD28_RS10020 SM00955 CYD28_RS10020 CYD28_RS10040 SM01192 CYD28_RS10040 CYD28_RS10040 SM01193 CYD28_RS10040 CYD28_RS10060 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYD28_RS10125 SM00028 Tetratricopeptide repeats CYD28_RS10150 SM00487 DEAD-like helicases superfamily CYD28_RS10150 SM00490 helicase superfamily c-terminal domain CYD28_RS10170 SM00257 Lysin motif CYD28_RS10180 SM00957 SecA DEAD-like domain CYD28_RS10180 SM00958 SecA preprotein cross-linking domain CYD28_RS10195 SM00487 DEAD-like helicases superfamily CYD28_RS10195 SM00490 helicase superfamily c-terminal domain CYD28_RS10215 SM00267 diguanylate cyclase CYD28_RS10275 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10320 SM00046 Diacylglycerol kinase catalytic domain (presumed) CYD28_RS10345 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10350 SM00341 Helicase and RNase D C-terminal CYD28_RS10350 SM00487 DEAD-like helicases superfamily CYD28_RS10350 SM00490 helicase superfamily c-terminal domain CYD28_RS10350 SM00956 CYD28_RS10350 CYD28_RS10355 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10370 SM00797 Allophanate hydrolase subunit 2 CYD28_RS10375 SM00796 Allophanate hydrolase subunit 1 CYD28_RS10435 SM01091 Transporter associated domain CYD28_RS10450 SM00420 helix_turn_helix, Deoxyribose operon repressor CYD28_RS10450 SM01134 CYD28_RS10450 CYD28_RS10505 SM00833 Cobalamin synthesis protein cobW C-terminal domain CYD28_RS10510 SM00347 helix_turn_helix multiple antibiotic resistance protein CYD28_RS10515 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10520 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10615 SM00342 helix_turn_helix, arabinose operon control protein CYD28_RS10625 SM00257 Lysin motif CYD28_RS10645 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10650 SM00387 Histidine kinase-like ATPases CYD28_RS10655 SM00448 cheY-homologous receiver domain CYD28_RS10655 SM00862 Transcriptional regulatory protein, C terminal CYD28_RS10690 SM01120 CYD28_RS10690 CYD28_RS10710 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10735 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10770 SM00382 ATPases associated with a variety of cellular activities CYD28_RS10790 SM00529 Helix-turn-helix diphteria tox regulatory element CYD28_RS10790 SM00899 CYD28_RS10790 CYD28_RS10925 SM00422 helix_turn_helix, mercury resistance CYD28_RS10930 SM00478 endonuclease III CYD28_RS10935 SM00836 DALR anticodon binding domain CYD28_RS10935 SM01016 Arginyl tRNA synthetase N terminal dom CYD28_RS11005 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11010 SM00091 PAS domain CYD28_RS11010 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11020 SM00857 Resolvase, N terminal domain CYD28_RS11070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS11085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CYD28_RS11115 SM00357 Cold shock protein domain CYD28_RS11185 SM00986 Uracil DNA glycosylase superfamily CYD28_RS11185 SM00987 UreE urease accessory protein, C-terminal domain CYD28_RS11225 SM00854 Bacterial capsule synthesis protein PGA_cap CYD28_RS11280 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CYD28_RS11445 SM00838 Elongation factor G C-terminus CYD28_RS11445 SM00889 Elongation factor G, domain IV CYD28_RS11465 SM00663 RNA polymerase I subunit A N-terminus CYD28_RS11500 SM00649 Ribosomal protein L11/L12 CYD28_RS11505 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CYD28_RS11505 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CYD28_RS11530 SM00967 RNA 2'-O ribose methyltransferase substrate binding CYD28_RS11535 SM00535 Ribonuclease III family CYD28_RS11540 SM00840 CYD28_RS11540 CYD28_RS11555 SM00670 Large family of predicted nucleotide-binding domains CYD28_RS11560 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11565 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11565 SM01086 C-terminal, D2-small domain, of ClpB protein CYD28_RS11600 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYD28_RS11700 SM00905 Dihydroneopterin aldolase CYD28_RS11720 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11730 SM00977 TilS substrate C-terminal domain CYD28_RS11735 SM00316 Ribosomal protein S1-like RNA-binding domain CYD28_RS11745 SM00363 S4 RNA-binding domain CYD28_RS11760 SM00487 DEAD-like helicases superfamily CYD28_RS11760 SM00490 helicase superfamily c-terminal domain CYD28_RS11760 SM00982 CYD28_RS11760 CYD28_RS11760 SM01058 CarD-like/TRCF domain CYD28_RS11775 SM01400 CYD28_RS11775 CYD28_RS11810 SM00650 Ribosomal RNA adenine dimethylases CYD28_RS11815 SM00493 CYD28_RS11815 CYD28_RS11835 SM00465 GIY-YIG type nucleases (URI domain) CYD28_RS11895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CYD28_RS11895 SM00493 CYD28_RS11895 CYD28_RS11905 SM00382 ATPases associated with a variety of cellular activities CYD28_RS11920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CYD28_RS11920 SM00866 CYD28_RS11920 CYD28_RS11925 SM00642 Alpha-amylase domain CYD28_RS11980 SM00257 Lysin motif CYD28_RS12030 SM00014 Acid phosphatase homologues CYD28_RS12205 SM00857 Resolvase, N terminal domain CYD28_RS12280 SM00855 Phosphoglycerate mutase family CYD28_RS12340 SM00116 Domain in cystathionine beta-synthase and other proteins. CYD28_RS12340 SM01240 CYD28_RS12340 CYD28_RS12365 SM00513 Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation CYD28_RS12460 SM00470 ParB-like nuclease domain CYD28_RS12495 SM00382 ATPases associated with a variety of cellular activities CYD28_RS12535 SM00382 ATPases associated with a variety of cellular activities CYD28_RS12555 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS12575 SM00470 ParB-like nuclease domain CYD28_RS12585 SM01228 CYD28_RS12585 CYD28_RS12635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CYD28_RS12660 SM00857 Resolvase, N terminal domain CYD28_RS12675 SM00857 Resolvase, N terminal domain CYD28_RS12690 SM00530 Helix-turn-helix XRE-family like proteins CYD28_RS12725 SM00419 helix_turn_helix, cAMP Regulatory protein