locus-tag class description CYD28_RS00005 ENOG4105CI4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) CYD28_RS00010 ENOG4105CZ8 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (By similarity) CYD28_RS00015 ENOG410848D S4 domain protein YaaA CYD28_RS00020 ENOG4105C3X it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity) CYD28_RS00025 ENOG4105C7D DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity) CYD28_RS00030 ENOG4105C24 DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity) CYD28_RS00035 ENOG4105DR1 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (By similarity) CYD28_RS00040 ENOG4105CGR Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (By similarity) CYD28_RS00045 ENOG4108UMN azlc family CYD28_RS00055 ENOG4105DWV Homoserine O-trans-acetylase CYD28_RS00065 ENOG4105BZR domain protein CYD28_RS00070 ENOG4105K9Q Binds to the 23S rRNA (By similarity) CYD28_RS00075 ENOG4105CDU Replicative dna helicase CYD28_RS00080 ENOG4105C91 Plays an important role in the de novo pathway of purine nucleotide biosynthesis CYD28_RS00095 ENOG4105CK6 Two component transcriptional regulator (Winged helix family CYD28_RS00100 ENOG4105BZU Histidine kinase CYD28_RS00115 ENOG4105Q2H domain protein CYD28_RS00120 ENOG4108UXA Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (By similarity) CYD28_RS00125 ENOG4107QMH DNA methylase CYD28_RS00170 ENOG4105D9N nucleoside CYD28_RS00210 ENOG4105KTU Transcriptional regulator, arsr family CYD28_RS00220 ENOG4105C59 p-type ATPase CYD28_RS00225 ENOG4108JMX Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid (By similarity) CYD28_RS00230 ENOG4105HF9 Inherit from COG: pyridine nucleotide-disulfide oxidoreductase CYD28_RS00235 ENOG4105XTG Pfam:DUF156 CYD28_RS00240 ENOG41087NI Sulfite exporter TauE/SafE CYD28_RS00250 ENOG41090UD (LipO)protein CYD28_RS00255 ENOG4108KD5 ADP-ribosylation crystallin J1 CYD28_RS00265 ENOG4105DE4 1-phosphofructokinase CYD28_RS00315 ENOG4108UXE Protein tyrosine phosphatase CYD28_RS00335 ENOG4107RVG penicillin-binding protein CYD28_RS00340 ENOG4108ZMQ domain protein CYD28_RS00345 ENOG4108QXE glycerophosphoryl diester phosphodiesterase CYD28_RS00355 ENOG4105F99 Hydroxymethylglutaryl-CoA synthase CYD28_RS00370 ENOG41090UD (LipO)protein CYD28_RS00395 ENOG4105W1Y Transcriptional regulator CYD28_RS00410 ENOG4105CJH Alcohol dehydrogenase zinc-binding domain protein CYD28_RS00430 ENOG4108UXE Protein tyrosine phosphatase CYD28_RS00450 ENOG4105D8X mechanosensitive ion channel CYD28_RS00465 ENOG4105CKI cobalamin synthesis protein CYD28_RS00470 ENOG4105DSE periplasmic solute binding protein CYD28_RS00480 ENOG4107YCK Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (By similarity) CYD28_RS00500 ENOG4105C22 threonyL-tRNA synthetase CYD28_RS00525 ENOG4105H93 Acyltransferase family CYD28_RS00535 ENOG4105DSE periplasmic solute binding protein CYD28_RS00540 ENOG4105CC5 ABC transporter CYD28_RS00545 ENOG4105DIK (ABC) transporter CYD28_RS00550 ENOG4105CKI cobalamin synthesis protein CYD28_RS00555 ENOG4105CWM branched-chain amino acid transport system II carrier protein CYD28_RS00570 ENOG4105DEF Extracellular solute-binding protein, family 5 CYD28_RS00580 ENOG4105C2T Binding-protein-dependent transport systems, inner membrane component CYD28_RS00585 ENOG4108JQ5 ABC transporter CYD28_RS00590 ENOG4105EFJ Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS00615 ENOG4105VUF Transcriptional regulator CYD28_RS00625 ENOG4105C37 (CBS) domain CYD28_RS00630 ENOG4108Z40 Transcriptional regulator CYD28_RS00635 ENOG4108RYK Nad-dependent epimerase dehydratase CYD28_RS00660 ENOG4105C85 amino acid CYD28_RS00685 ENOG4105J1V Triacylglycerol lipase CYD28_RS00710 ENOG4105ETE Transcriptional regulator (LacI family CYD28_RS00715 ENOG4108RVA ribokinase CYD28_RS00720 ENOG4105MRB Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose (By similarity) CYD28_RS00725 ENOG4105C2J ABC transporter CYD28_RS00730 ENOG4105CNN ABC, transporter CYD28_RS00735 ENOG4105E9V Periplasmic binding protein LacI transcriptional regulator CYD28_RS00745 ENOG4105CCG Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate (By similarity) CYD28_RS00750 ENOG4108IAA Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate (By similarity) CYD28_RS00755 ENOG4108Z2X Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine (By similarity) CYD28_RS00765 ENOG4108VXD carboxy-peptidase CYD28_RS00770 ENOG4106KNT transcriptional regulator CYD28_RS00775 ENOG4105VZJ PTS System CYD28_RS00780 ENOG4105CK1 PTS System CYD28_RS00785 ENOG4105VCP PTS System CYD28_RS00800 ENOG4105RD7 BadF BadG BcrA BcrD CYD28_RS00810 ENOG4105KAF membrAne CYD28_RS00820 ENOG4105D86 that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity) CYD28_RS00825 ENOG4105G7B Protein of unknown function (DUF2992) CYD28_RS00835 ENOG4108K2R Glutathione-regulated potassium-efflux system ancillary protein CYD28_RS00855 ENOG4108YYS metal-dependent hydrolase (By similarity) CYD28_RS00870 ENOG4105IE8 Alpha-ketoglutarate permease CYD28_RS00875 ENOG4105CHR reductase CYD28_RS00895 ENOG4105C26 Dehydrogenase CYD28_RS00900 ENOG4105CPQ Dehydrogenase CYD28_RS00905 ENOG4105K56 Transcriptional regulator CYD28_RS00925 ENOG4105C87 Aminotransferase class I and II CYD28_RS00940 ENOG4107RUY (E1 component), alpha subunit CYD28_RS00950 ENOG4107QKR Dehydrogenase CYD28_RS00960 ENOG4105K7K Transcriptional regulator CYD28_RS00970 ENOG4105CHR reductase CYD28_RS00975 ENOG4107SQ3 mannitol-1-phosphate 5-dehydrogenase CYD28_RS00980 ENOG4105DTZ bifunctional PTS system fructose-specific transporter subunit IIA HPr protein CYD28_RS00985 ENOG4105ETD TRANSCRIPTIONal CYD28_RS00990 ENOG4105CTS PTS system mannitol-specific CYD28_RS01005 ENOG4105VES Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) CYD28_RS01010 ENOG4105FR1 rard protein CYD28_RS01020 ENOG4107SJB teichoic acid biosynthesis CYD28_RS01035 ENOG4105C3X it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity) CYD28_RS01075 ENOG4105W1Y Transcriptional regulator CYD28_RS01100 ENOG4105YB8 TM2 domain containing protein CYD28_RS01110 ENOG4105DBV ornithine carbamoyltransferase CYD28_RS01115 ENOG4105C5B carbamate kinase CYD28_RS01125 ENOG41081XE plasmid maintenance system antidote protein, xre family CYD28_RS01155 ENOG4105DEN Luciferase family CYD28_RS01165 ENOG4105CZF Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism (By similarity) CYD28_RS01175 ENOG4107QPK )-transporter CYD28_RS01180 ENOG4105JHY Membrane CYD28_RS01185 ENOG4105CFM UPF0317 protein CYD28_RS01200 ENOG4105CE4 GlcNAc 6-P deacetylase CYD28_RS01210 ENOG4105CKA Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion (By similarity) CYD28_RS01215 ENOG4105C9S Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P) (By similarity) CYD28_RS01220 ENOG4106KNT transcriptional regulator CYD28_RS01225 ENOG4105DKQ ROK family CYD28_RS01230 ENOG4107SCR N-acetylneuraminate lyase CYD28_RS01235 ENOG4107RJ1 sodium solute CYD28_RS01260 ENOG4105EFJ Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS01265 ENOG4105C3U ABC transporter CYD28_RS01280 ENOG4107RNA Nickel ABC transporter, periplasmic nickel-binding protein CYD28_RS01285 ENOG4108KN7 Removes 5-oxoproline from various penultimate amino acid residues except L-proline (By similarity) CYD28_RS01305 ENOG4107QHE Choloylglycine hydrolase CYD28_RS01315 ENOG4105C72 UPF0176 protein CYD28_RS01320 ENOG4108TY5 Exhibits lactonase activity. Acts in cells with perturbed membrane integrity and is possibly related to the membrane homeostasis CYD28_RS01325 ENOG4107QSU Phosphoglucomutase phosphomannomutase alpha beta alpha domain CYD28_RS01345 ENOG4105CCI Myosin-Cross-Reactive Antigen CYD28_RS01365 ENOG4105CJ1 ABC, transporter CYD28_RS01375 ENOG4105VZ8 Transcriptional regulator CYD28_RS01380 ENOG41062ES Transcriptional regulator CYD28_RS01385 ENOG4108Q5Y Membrane CYD28_RS01390 ENOG4105F27 Major Facilitator CYD28_RS01400 ENOG4107RNS bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase 3'-nucleotidase periplasmic CYD28_RS01410 ENOG4105D5T phosphonate abc transporter CYD28_RS01445 ENOG4106YAG Part of the accessory SecA2 SecY2 system specifically required for export of CYD28_RS01450 ENOG4108XJK accessory Sec system protein Asp1 CYD28_RS01455 ENOG41089G2 accessory Sec system protein Asp2 CYD28_RS01460 ENOG4106E62 Accessory Sec system protein Asp3 CYD28_RS01465 ENOG4108MGR Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (By similarity) CYD28_RS01470 ENOG4108NMT An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon (By similarity) CYD28_RS01505 ENOG4108HW8 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity) CYD28_RS01525 ENOG4105E5M Multidrug resistance protein D CYD28_RS01540 ENOG4105EYF MMPL domain protein CYD28_RS01545 ENOG4105DUM transcriptional regulator, lysR family CYD28_RS01550 ENOG4105DDT Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP (By similarity) CYD28_RS01560 ENOG4105CSX c4-dicarboxylate anaerobic carrier CYD28_RS01565 ENOG4105CI1 PTS System CYD28_RS01570 ENOG4108S4A n-acetylmuramoyl-l-alanine amidase CYD28_RS01570 ENOG4108S4A n-acetylmuramoyl-l-alanine amidase CYD28_RS01605 ENOG4105CEU Arginine dihydrolase CYD28_RS01615 ENOG4105IJS Transcriptional regulator CYD28_RS01625 ENOG4105ETE Transcriptional regulator (LacI family CYD28_RS01635 ENOG4107QPD alcohol dehydrogenase CYD28_RS01640 ENOG4106AKJ CYD28_RS01650 ENOG4107RA9 decarboxylase CYD28_RS01660 ENOG4108V3G Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (By similarity) CYD28_RS01700 ENOG4105EAG UDP-N-acetylglucosamine 2-epimerase CYD28_RS01725 ENOG4106CD9 glycosyl transferase group 1 CYD28_RS01730 ENOG4105D3Q Sugar transferase CYD28_RS01745 ENOG4105EAG UDP-N-acetylglucosamine 2-epimerase CYD28_RS01750 ENOG4108KGH TRANSCRIPTIONal CYD28_RS01755 ENOG4105G6Z alkaline phosphatase CYD28_RS01800 ENOG4105ET3 Reduction of activated sulfate into sulfite (By similarity) CYD28_RS01805 ENOG4107EER Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component (By similarity) CYD28_RS01810 ENOG4105ET1 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate (By similarity) CYD28_RS01815 ENOG4105CB8 Multifunctional enzyme that catalyzes the SAM-dependent methylation of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 and then position C-12 or C-18 to form trimethylpyrrocorphin 2. It also catalyzes the conversion of precorrin-2 into siroheme. This reaction consists of the NAD- dependent oxidation of precorrin-2 into sirohydrochlorin and its subsequent ferrochelation into siroheme (By similarity) CYD28_RS01820 ENOG4108Z73 Siroheme synthase CYD28_RS01825 ENOG410635A Membrane CYD28_RS01830 ENOG4107RIQ Sulfate adenylate transferase CYD28_RS01835 ENOG4108I67 Catalyzes the synthesis of activated sulfate (By similarity) CYD28_RS01855 ENOG4105DS2 Anaerobic c4-dicarboxylate transporter CYD28_RS01860 ENOG4105C94 Transporter CYD28_RS01865 ENOG4105TRT Transcriptional regulator CYD28_RS01870 ENOG4105C26 Dehydrogenase CYD28_RS01875 ENOG4105CZ6 Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine (By similarity) CYD28_RS01910 ENOG4108IQF Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA (By similarity) CYD28_RS01920 ENOG4107RSM transcriptional regulator CYD28_RS01930 ENOG4108HRN Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate (By similarity) CYD28_RS01935 ENOG4105CF9 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation (By similarity) CYD28_RS01940 ENOG4105DWT malate dehydrogenase (quinone) CYD28_RS01950 ENOG4105CS2 ec 3.2.1.21 CYD28_RS01970 ENOG4105WYW fructose-bisphosphate aldolase CYD28_RS01975 ENOG4105CC8 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism (By similarity) CYD28_RS02000 ENOG4105D01 (LipO)protein CYD28_RS02005 ENOG4108JPW Aminotransferase CYD28_RS02010 ENOG4105CUB amino acid CYD28_RS02020 ENOG4107FQX Alpha-acetolactate decarboxylase CYD28_RS02065 ENOG4107QYT Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (By similarity) CYD28_RS02070 ENOG4105FGM Fructosamine kinase CYD28_RS02105 ENOG41079Y2 Catalyzes the coenzyme F420-dependent oxidation of glucose 6-phosphate (G6P) to 6-phosphogluconolactone CYD28_RS02115 ENOG41061JJ Peptidase family M23 CYD28_RS02125 ENOG4105CSR polyphosphate kinase 2 CYD28_RS02140 ENOG4105EWK phytoene CYD28_RS02145 ENOG41076QQ Glycosyl transferase, family 2 CYD28_RS02150 ENOG4105FE1 phytoene synthase CYD28_RS02155 ENOG4105EWK phytoene CYD28_RS02170 ENOG41082MP copper ion binding protein CYD28_RS02175 ENOG4105C59 p-type ATPase CYD28_RS02185 ENOG4105CYX Short-chain dehydrogenase reductase Sdr CYD28_RS02190 ENOG4108UW5 maltose o-acetyltransferase CYD28_RS02195 ENOG4105C26 Dehydrogenase CYD28_RS02215 ENOG4105D7N magnesium and cobalt transport protein CorA CYD28_RS02225 ENOG4105K85 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated (By similarity) CYD28_RS02230 ENOG4105F99 Hydroxymethylglutaryl-CoA synthase CYD28_RS02235 ENOG4105CHU acetyl-coa acetyltransferase CYD28_RS02245 ENOG41068JE domain protein CYD28_RS02255 ENOG4105CMU LysR family (Transcriptional regulator CYD28_RS02265 ENOG4105VAW lrga family CYD28_RS02270 ENOG41067MG lrgb family CYD28_RS02285 ENOG4105CI1 PTS System CYD28_RS02290 ENOG4105CPQ Dehydrogenase CYD28_RS02300 ENOG4105XXY Thioredoxin CYD28_RS02305 ENOG4105C80 Catalyzes the reversible oxidation of malate to oxaloacetate (By similarity) CYD28_RS02315 ENOG4108UZ3 Transporter CYD28_RS02325 ENOG4108MCI Transcriptional regulator, ARAC family CYD28_RS02335 ENOG4105N98 Capsule biosynthesis protein capB CYD28_RS02355 ENOG4105CMG Carbohydrate kinase CYD28_RS02370 ENOG4105EJQ L-serine dehydratase CYD28_RS02380 ENOG4108Z7F N-acetyltransferase CYD28_RS02385 ENOG4108Z6X (sortase) family CYD28_RS02390 ENOG4108AZI Catalyzes the hydrolysis of 4-amino-2-methyl-5- hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2- methyl-5-hydroxymethylpyrimidine phosphate (HMP-P) (By similarity) CYD28_RS02405 ENOG4105C26 Dehydrogenase CYD28_RS02415 ENOG4108TKW Glyoxalase Bleomycin resistance protein (Dioxygenase CYD28_RS02430 ENOG4105C26 Dehydrogenase CYD28_RS02435 ENOG41090MY MarR family Transcriptional regulator CYD28_RS02445 ENOG4105DA2 glyoxalase bleomycin resistance protein dioxygenase CYD28_RS02450 ENOG4105FBA Phospholipase Carboxylesterase CYD28_RS02455 ENOG4108K88 Membrane CYD28_RS02465 ENOG4105DMC D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 CYD28_RS02470 ENOG4107T5V SNARE associated Golgi CYD28_RS02475 ENOG4105D06 uba thif-type nad fad binding protein CYD28_RS02480 ENOG4105CA8 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S (By similarity) CYD28_RS02485 ENOG4105CA8 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S (By similarity) CYD28_RS02490 ENOG41080HI glycine oxidase CYD28_RS02500 ENOG4105DJB Major Facilitator Superfamily CYD28_RS02515 ENOG4105NRR Uncharacterized protein conserved in bacteria (DUF2188) CYD28_RS02535 ENOG4105G3Z GntR family transcriptional regulator CYD28_RS02540 ENOG4105CMG Carbohydrate kinase CYD28_RS02545 ENOG4105C6Z Gluconate CYD28_RS02555 ENOG4105C3Y UTP-glucose-1-phosphate uridylyltransferase CYD28_RS02560 ENOG4105M6F mutator MutT protein CYD28_RS02585 ENOG4105EMU Dehydrogenase CYD28_RS02595 ENOG4105CUU Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) (By similarity) CYD28_RS02600 ENOG4107R33 ppx gppa phosphatase CYD28_RS02605 ENOG4105CFC Transporter CYD28_RS02610 ENOG41061TZ Short-chain dehydrogenase reductase Sdr CYD28_RS02615 ENOG4105CN9 Peptidase m42 family protein CYD28_RS02630 ENOG4105CBC glutamate synthase CYD28_RS02645 ENOG41083J0 (ABC) transporter CYD28_RS02650 ENOG4105C4B ABC transporter, permease CYD28_RS02660 ENOG4105DPZ Two component transcriptional regulator (Winged helix family CYD28_RS02670 ENOG4105F27 Major Facilitator CYD28_RS02675 ENOG4105EBR Carboxylesterase CYD28_RS02680 ENOG4107QTZ amino acid CYD28_RS02685 ENOG4105CZ9 Domain of unknown function (DU1801) CYD28_RS02710 ENOG4105R40 Glycine betaine carnitine choline CYD28_RS02715 ENOG41067MG lrgb family CYD28_RS02720 ENOG4105Z9F murein hydrolase regulator LrgA CYD28_RS02725 ENOG4105DY9 regulatoR CYD28_RS02730 ENOG4108HRK Histidine kinase CYD28_RS02740 ENOG4108JZF Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity) CYD28_RS02745 ENOG4105R3P Inner membrane protein yagU CYD28_RS02755 ENOG4105DHW Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins CYD28_RS02765 ENOG4105C0X amino acid CYD28_RS02770 ENOG4107SUZ Sodium/hydrogen exchanger family CYD28_RS02775 ENOG4105C85 amino acid CYD28_RS02795 ENOG4105DVA methyltransferase CYD28_RS02800 ENOG4105FJH Di-iron-containing protein involved in the repair of iron-sulfur clusters damaged by oxidative and nitrosative stress conditions (By similarity) CYD28_RS02805 ENOG4105C2C drug resistance transporter, Bcr CflA CYD28_RS02815 ENOG4105BZW Glycerate kinase CYD28_RS02840 ENOG4105DKJ Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity) CYD28_RS02855 ENOG4105EAB amino acid AbC transporter CYD28_RS02860 ENOG4105DRP amino acid AbC transporter CYD28_RS02865 ENOG4105CDA abc transporter atp-binding protein CYD28_RS02885 ENOG4105DSE periplasmic solute binding protein CYD28_RS02890 ENOG4108YYC ycei family CYD28_RS02915 ENOG4108IFG nitrite reductase, (NAD(P)H) CYD28_RS02920 ENOG4105KH3 nitrite reductase (NAD(P)h) small subunit CYD28_RS02925 ENOG4105CB8 Multifunctional enzyme that catalyzes the SAM-dependent methylation of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 and then position C-12 or C-18 to form trimethylpyrrocorphin 2. It also catalyzes the conversion of precorrin-2 into siroheme. This reaction consists of the NAD- dependent oxidation of precorrin-2 into sirohydrochlorin and its subsequent ferrochelation into siroheme (By similarity) CYD28_RS02935 ENOG4108IUE nitrate reductase beta subunit CYD28_RS02940 ENOG4105R3A Nitrate reductase CYD28_RS02955 ENOG4105BZU Histidine kinase CYD28_RS02960 ENOG4105WH1 Two component transcriptional regulator luxr family CYD28_RS02965 ENOG4105DQQ Major facilitator superfamily MFS_1 CYD28_RS02975 ENOG4105K56 Transcriptional regulator CYD28_RS03000 ENOG410606W general stress protein CYD28_RS03005 ENOG4108DMH HTH_ARAC CYD28_RS03030 ENOG4105ECB domain protein CYD28_RS03060 ENOG4105CAY ferredoxin--nadp reductase CYD28_RS03065 ENOG4105KEG ribosomal-protein-alanine acetyltransferase CYD28_RS03075 ENOG410650H (LipO)protein CYD28_RS03080 ENOG4105DBE peroxidase CYD28_RS03085 ENOG4107SJW iron permease, FTR1 CYD28_RS03090 ENOG4105DCX Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides (By similarity) CYD28_RS03095 ENOG41067S4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system (By similarity) CYD28_RS03105 ENOG4107SJB teichoic acid biosynthesis CYD28_RS03115 ENOG4108I69 Glycosyl transferases group 1 CYD28_RS03120 ENOG4105DWT malate dehydrogenase (quinone) CYD28_RS03135 ENOG4105BZU Histidine kinase CYD28_RS03140 ENOG4105EFI regulatoR CYD28_RS03145 ENOG4105I2S Part of the ABC transporter complex hrt involved in hemin import. Responsible for the translocation of the substrate across the membrane (By similarity) CYD28_RS03150 ENOG4105CQU Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (By similarity) CYD28_RS03160 ENOG41062A4 Transcriptional regulator CYD28_RS03165 ENOG4105T65 Membrane-associated protein CYD28_RS03170 ENOG4105C2C drug resistance transporter, Bcr CflA CYD28_RS03180 ENOG4105CW7 secretion protein, HlyD family CYD28_RS03185 ENOG4105C0R drug resistance transporter emrb qaca subfamily CYD28_RS03210 ENOG4105D7N magnesium and cobalt transport protein CorA CYD28_RS03215 ENOG4106UJV Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) (By similarity) CYD28_RS03220 ENOG4105D6U Sodium Glutamate Symporter CYD28_RS03225 ENOG4108VX5 3-methyladenine DNA glycosylase CYD28_RS03240 ENOG4105KK4 UPF0060 membrane protein CYD28_RS03245 ENOG4105ENN converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose (By similarity) CYD28_RS03250 ENOG4108RPX mosc domain containing protein CYD28_RS03255 ENOG4105E66 phosphoriboisomerase A CYD28_RS03265 ENOG4106E7R Lysostaphin resistance protein A CYD28_RS03270 ENOG41088SP formiminoglutamate hydrolase CYD28_RS03280 ENOG4105CH2 amidohydrolase CYD28_RS03285 ENOG4105CYX Short-chain dehydrogenase reductase Sdr CYD28_RS03290 ENOG4107XC4 flavin reductase domain protein, FMN-binding CYD28_RS03305 ENOG4108Q3X Transcriptional regulator CYD28_RS03310 ENOG4105CI1 PTS System CYD28_RS03320 ENOG4107YBY Hydrolase CYD28_RS03350 ENOG4108PSC Represses the expression of the murPQ operon involved in the uptake and degradation of N-acetylmuramic acid (MurNAc). Binds to two adjacent inverted repeats within the operator region. MurNAc 6-phosphate, the substrate of MurQ, is the specific inducer that weakens binding of MurR to the operator (By similarity) CYD28_RS03355 ENOG4105C5Y PTS System CYD28_RS03360 ENOG4105E15 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate CYD28_RS03375 ENOG4105D29 Helix-turn-helix type 11 domain protein CYD28_RS03385 ENOG4108KGH TRANSCRIPTIONal CYD28_RS03390 ENOG4108JB9 formate dehydrogenase CYD28_RS03395 ENOG4105CHN ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (By similarity) CYD28_RS03415 ENOG4105C5I Dehydrogenase CYD28_RS03420 ENOG41080TC multidrug resistance protein CYD28_RS03445 ENOG4105DFD Na H antiporter CYD28_RS03455 ENOG41068JE domain protein CYD28_RS03490 ENOG4105FDT acyl-CoA dehydrogenase CYD28_RS03500 ENOG4105DU0 nucleoside hydrolase CYD28_RS03505 ENOG4107ZYJ bioY protein CYD28_RS03515 ENOG4107H9G Necessary for formate dehydrogenase activity (By similarity) CYD28_RS03520 ENOG4108S6J ABC transporter, periplasmic molybdate-binding protein CYD28_RS03525 ENOG4105E0C molybdate abc transporter CYD28_RS03530 ENOG4105CGB Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS03535 ENOG4105D06 uba thif-type nad fad binding protein CYD28_RS03540 ENOG4105EPU Molybdenum cofactor synthesis domain protein CYD28_RS03545 ENOG4108YXW Together with MoaA, is involved in the conversion of 5'- GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin precursor Z) (By similarity) CYD28_RS03560 ENOG4108ZAF Molybdopterin CYD28_RS03570 ENOG41082CS Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor (By similarity) CYD28_RS03575 ENOG4105CM1 Catalyzes, together with MoaC, the conversion of 5'-GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin precursor Z) (By similarity) CYD28_RS03605 ENOG4108TV1 Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor (By similarity) CYD28_RS03625 ENOG4107EXU Short-chain dehydrogenase reductase Sdr CYD28_RS03630 ENOG4105CSC Glucose uptake protein CYD28_RS03640 ENOG4105C9U ATP-dependent DNA helicase RecQ CYD28_RS03645 ENOG4105C7N Xanthine uracil vitamin C permease CYD28_RS03655 ENOG4108Z10 Involved in the binding of tRNA to the ribosomes (By similarity) CYD28_RS03660 ENOG4105EEE One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity) CYD28_RS03665 ENOG4106U5A One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) CYD28_RS03670 ENOG41080UE One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (By similarity) CYD28_RS03675 ENOG4105CFD One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity CYD28_RS03680 ENOG4105K7S Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (By similarity) CYD28_RS03685 ENOG4105KAP The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (By similarity) CYD28_RS03690 ENOG4105CKE Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (By similarity) CYD28_RS03695 ENOG4108R70 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (By similarity) CYD28_RS03700 ENOG41082SA 50s ribosomal protein l29 CYD28_RS03705 ENOG4105K87 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal CYD28_RS03710 ENOG4108UNN Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome (By similarity) CYD28_RS03715 ENOG4105KAR One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit (By similarity) CYD28_RS03720 ENOG4105CW6 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits CYD28_RS03730 ENOG4108UJY One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (By similarity) CYD28_RS03735 ENOG4108R5J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity) CYD28_RS03740 ENOG4105K4C This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (By similarity) CYD28_RS03745 ENOG4108RA9 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (By similarity) CYD28_RS03750 ENOG4105VPB 50S ribosomal protein L30 CYD28_RS03755 ENOG4108UZ0 Binds to the 23S rRNA (By similarity) CYD28_RS03760 ENOG4105CGG The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (By similarity) CYD28_RS03765 ENOG4105CC8 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism (By similarity) CYD28_RS03770 ENOG4105K9U however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 (By similarity) CYD28_RS03775 ENOG41067V7 50S ribosomal protein L36 CYD28_RS03780 ENOG4108Z04 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits CYD28_RS03790 ENOG4105CTF DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) CYD28_RS03795 ENOG4108ZT0 50S ribosomal protein l17 CYD28_RS03800 ENOG4108JJB ABC transporter CYD28_RS03805 ENOG4108JJB ABC transporter CYD28_RS03815 ENOG4105DI7 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (By similarity) CYD28_RS03820 ENOG4108UM5 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity) CYD28_RS03825 ENOG4108UJD 30S ribosomal protein S9 CYD28_RS03830 ENOG4105NDF NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. May also have NAD-dependent lysine demalonylase and desuccinylase activity (By similarity) CYD28_RS03835 ENOG4105E98 transcriptional regulator DeoR family CYD28_RS03855 ENOG4105DE4 1-phosphofructokinase CYD28_RS03860 ENOG4105D2M Aldolase CYD28_RS03865 ENOG4105VCP PTS System CYD28_RS03870 ENOG4105CK1 PTS System CYD28_RS03875 ENOG4105CS2 ec 3.2.1.21 CYD28_RS03885 ENOG4105DEN Luciferase family CYD28_RS03890 ENOG4105CIS alcohol dehydrogenase CYD28_RS03895 ENOG4105C94 Transporter CYD28_RS03910 ENOG4105VBF alkaline shock protein CYD28_RS03925 ENOG4107SFI Major Facilitator superfamily CYD28_RS03935 ENOG4106M28 alanine racemase domain protein CYD28_RS03940 ENOG4108HUF Transporter CYD28_RS03945 ENOG4105DQ5 transport system permease protein CYD28_RS03950 ENOG4108U1V ABC transporter, permease CYD28_RS03955 ENOG4105DWD nucleoside recognition domain protein CYD28_RS03960 ENOG4106EQQ Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the oxo-bilirubin chromophore staphylobilin (a mixture of the linear tetrapyrroles 5-oxo-delta- bilirubin and 15-oxo-beta-bilirubin) in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron (By similarity) CYD28_RS03965 ENOG4107DUR UPF0457 protein CYD28_RS03970 ENOG4107K5X Membrane-bound metal-dependent hydrolase CYD28_RS03975 ENOG4108MYC UTP-glucose-1-phosphate uridylyltransferase CYD28_RS03980 ENOG4108UT2 hemolysin iii CYD28_RS04000 ENOG4105D1F ATP-binding protein CYD28_RS04055 ENOG4105C8B TIGR00159 family CYD28_RS04065 ENOG4107QJF Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (By similarity) CYD28_RS04075 ENOG4105DKW ABC transporter CYD28_RS04100 ENOG4105PGM cation diffusion facilitator family transporter CYD28_RS04105 ENOG4105KTU Transcriptional regulator, arsr family CYD28_RS04115 ENOG4105DG6 mannose-6-phosphate isomerase CYD28_RS04140 ENOG4108RMU ferritin dps family protein CYD28_RS04145 ENOG4105D3A purine nucleoside phosphorylase DeoD-type CYD28_RS04150 ENOG4105FCI Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate (By similarity) CYD28_RS04155 ENOG4105CMW The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity) CYD28_RS04160 ENOG4105CZG Phosphotransfer between the C1 and C5 carbon atoms of pentose (By similarity) CYD28_RS04170 ENOG4106762 Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) (By similarity) CYD28_RS04190 ENOG4105HNY Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (By similarity) CYD28_RS04205 ENOG4105C8D Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (By similarity) CYD28_RS04215 ENOG4105D2N Aldolase CYD28_RS04220 ENOG4105CDF Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (By similarity) CYD28_RS04230 ENOG4105C26 Dehydrogenase CYD28_RS04235 ENOG4105C4P Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template (By similarity) CYD28_RS04240 ENOG41082DI 50s ribosomal protein l31 CYD28_RS04245 ENOG4107104 thymidine kinase CYD28_RS04250 ENOG4105C8K Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (By similarity) CYD28_RS04255 ENOG4105EQY Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif (By similarity) CYD28_RS04260 ENOG4105EK0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (By similarity) CYD28_RS04265 ENOG4107WAU Protein tyrosine phosphatase CYD28_RS04270 ENOG4108UIC UPF0340 protein CYD28_RS04275 ENOG4105C65 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (By similarity) CYD28_RS04280 ENOG4105CZ5 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (By similarity) CYD28_RS04285 ENOG4105EAG UDP-N-acetylglucosamine 2-epimerase CYD28_RS04295 ENOG4107RFS it plays a direct role in the translocation of protons across the membrane (By similarity) CYD28_RS04300 ENOG4105WS6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity) CYD28_RS04305 ENOG4107ZFM Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) (By similarity) CYD28_RS04310 ENOG4107YZM F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity) CYD28_RS04315 ENOG4105CDG Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (By similarity) CYD28_RS04320 ENOG4105J80 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (By similarity) CYD28_RS04325 ENOG4105C4J Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (By similarity) CYD28_RS04330 ENOG4105KNM Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity) CYD28_RS04340 ENOG4105CDF Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine (By similarity) CYD28_RS04345 ENOG4108YXN Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs (By similarity) CYD28_RS04365 ENOG4105JH5 thiaminase II CYD28_RS04375 ENOG4105C4U 4-methyl-5-beta-hydroxyethylthiazole kinase CYD28_RS04380 ENOG4108UV6 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) (By similarity) CYD28_RS04385 ENOG4107XQC Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins (By similarity) CYD28_RS04400 ENOG4105CQX Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol (By similarity) CYD28_RS04405 ENOG4105VPX protein, conserved in bacteria CYD28_RS04430 ENOG4105CPF Cell wall formation (By similarity) CYD28_RS04435 ENOG4107EES Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide the precursor of murein (By similarity) CYD28_RS04440 ENOG4105C1J atp-dependent rna helicase CYD28_RS04450 ENOG4105CKV Membrane CYD28_RS04460 ENOG41082V8 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein (By similarity) CYD28_RS04465 ENOG4105CJ4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (By similarity) CYD28_RS04475 ENOG4108YZM Toxic component of a toxin-antitoxin (TA) module (By similarity) CYD28_RS04480 ENOG4107SGM protein serine threonine phosphatase CYD28_RS04485 ENOG4105WN5 stage II sporulation protein CYD28_RS04490 ENOG4108ZBE Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti-anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition (By similarity) CYD28_RS04540 ENOG4105C7B Threonine dehydratase CYD28_RS04545 ENOG4105MQS Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (By similarity) CYD28_RS04550 ENOG4105CQI Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (By similarity) CYD28_RS04555 ENOG4105C0C Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (By similarity) CYD28_RS04560 ENOG4105CYQ Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) (By similarity) CYD28_RS04565 ENOG4105C6M Alpha-keto-beta-hydroxylacyl reductoisomerase CYD28_RS04570 ENOG4108ZP8 Acetolactate synthase small subunit CYD28_RS04575 ENOG4105C7K acetolactate synthase CYD28_RS04580 ENOG4105C01 Dihydroxy-acid dehydratase CYD28_RS04585 ENOG4105K8N protein family UPF0079, ATPase CYD28_RS04590 ENOG41072GX Peptidase M22 Glycoprotease CYD28_RS04595 ENOG410801F ribosomal-protein-alanine acetyltransferase CYD28_RS04600 ENOG4105CPM Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (By similarity) CYD28_RS04605 ENOG4105C5H ABC transporter CYD28_RS04610 ENOG4105FF6 Modulates transcription in response to changes in cellular NADH NAD( ) redox state (By similarity) CYD28_RS04615 ENOG4105CUC YeeE YedE family protein CYD28_RS04625 ENOG4105BZU Histidine kinase CYD28_RS04645 ENOG4108WCX response regulator CYD28_RS04660 ENOG410695V Essential for the production of a quorum sensing system signal molecule, the autoinducing peptide (AIP). This quorum sensing system is responsible for the regulation of the expression of virulence factor genes. Involved in the proteolytic processing of AgrD, the precursor of AIP (By similarity) CYD28_RS04665 ENOG4105CQP nitrilase cyanide hydratase and apolipoprotein n-acyltransferase CYD28_RS04685 ENOG4105K5Y Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter (By similarity) CYD28_RS04690 ENOG4105CJ9 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity) CYD28_RS04695 ENOG4105VTR Integrase CYD28_RS04755 ENOG410811P TRANSCRIPTIONAl REGULATOR GntR family CYD28_RS04770 ENOG4105CJ1 ABC, transporter CYD28_RS04810 ENOG4105HHQ 6-phosphogluconolactonase (EC 3.1.1.31) CYD28_RS04815 ENOG4105C26 Dehydrogenase CYD28_RS04820 ENOG4105E2M Manganese-dependent inorganic pyrophosphatase CYD28_RS04845 ENOG4105DAP Nicotinate phosphoribosyltransferase CYD28_RS04850 ENOG4107RA1 nh(3)-dependent nad( ) synthetase CYD28_RS04855 ENOG4108U5N UPF0316 protein CYD28_RS04865 ENOG4105C83 adenylosuccinate lyase CYD28_RS04870 ENOG4105KGF protein, YerC YecD CYD28_RS04875 ENOG4108RTE 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales (By similarity) CYD28_RS04880 ENOG4105C4R Atp-dependent dna helicase CYD28_RS04885 ENOG4105C77 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (By similarity) CYD28_RS04900 ENOG4105VB5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (By similarity) CYD28_RS04905 ENOG4105C3P Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (By similarity) CYD28_RS04910 ENOG4105CHT Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (By similarity) CYD28_RS04915 ENOG4105CBD Diacylglycerol kinase CYD28_RS04920 ENOG4105BZT Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA (By similarity) CYD28_RS04930 ENOG4105CQ3 Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity) CYD28_RS04940 ENOG41090A1 ferritin CYD28_RS04955 ENOG4108V3A UPF0421 protein CYD28_RS04960 ENOG4105CA1 Removes the N-terminal methionine from nascent proteins (By similarity) CYD28_RS04965 ENOG4105EMU Dehydrogenase CYD28_RS04985 ENOG4105ENE Histidine kinase CYD28_RS04990 ENOG4105WH1 Two component transcriptional regulator luxr family CYD28_RS04995 ENOG4107U9T Pfam:Ribonuclease_BN CYD28_RS05005 ENOG4107ZCW Low molecular weight phosphotyrosine protein phosphatase CYD28_RS05020 ENOG4108S4H thioesterase Superfamily protein CYD28_RS05040 ENOG4108Z0Z intracellular protease Pfpi family CYD28_RS05045 ENOG4105BZ4 penicillin-binding protein CYD28_RS05050 ENOG410902V Modulates RecA activity (By similarity) CYD28_RS05060 ENOG4105EY8 ABC transporter CYD28_RS05070 ENOG41067AE Membrane-bound metal-dependent hydrolase CYD28_RS05075 ENOG4105CEN a g-specific adenine glycosylase CYD28_RS05080 ENOG4105EVI UPF0374 protein CYD28_RS05090 ENOG4107NBY Membrane CYD28_RS05095 ENOG4105CDM Glutamate-1-semialdehyde aminotransferase CYD28_RS05100 ENOG4108YXY alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen CYD28_RS05105 ENOG4105C5I Dehydrogenase CYD28_RS05110 ENOG4105G5W regulator Fur family CYD28_RS05270 ENOG4105E5Q amino acid AbC transporter CYD28_RS05275 ENOG4105CDA abc transporter atp-binding protein CYD28_RS05280 ENOG4105EH2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) (By similarity) CYD28_RS05290 ENOG4105CKA Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion (By similarity) CYD28_RS05305 ENOG4105C9Q fumarate hydratase class II CYD28_RS05310 ENOG4108YBP pseudouridine synthase CYD28_RS05315 ENOG4105BZU Histidine kinase CYD28_RS05320 ENOG4105WH1 Two component transcriptional regulator luxr family CYD28_RS05330 ENOG4108UH6 UPF0754 membrane protein CYD28_RS05335 ENOG4105WZB UPF0342 protein CYD28_RS05345 ENOG4106D4I domain protein CYD28_RS05350 ENOG4105EQI Metal Dependent Phosphohydrolase CYD28_RS05355 ENOG4107UUG Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins (By similarity) CYD28_RS05370 ENOG4105K59 histidine triad (HIT) protein CYD28_RS05400 ENOG4105CFZ Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (By similarity) CYD28_RS05405 ENOG4107TTW Catalyzes the ferrous insertion into protoporphyrin IX (By similarity) CYD28_RS05410 ENOG4105C1Q protoporphyrinogen oxidase CYD28_RS05465 ENOG4105CEY Amp-dependent synthetase and ligase CYD28_RS05475 ENOG4105VAS Could be involved in insertion of integral membrane proteins into the membrane (By similarity) CYD28_RS05480 ENOG4105EJF Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (By similarity) CYD28_RS05490 ENOG4105DJ1 Phosphoenolpyruvate Carboxylase CYD28_RS05495 ENOG4105CPH Catalyzes the formation of S-adenosylmethionine from methionine and ATP CYD28_RS05510 ENOG4106A8V Protein CrcB homolog CYD28_RS05515 ENOG4106A8V Protein CrcB homolog CYD28_RS05525 ENOG4105CW3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (By similarity) CYD28_RS05550 ENOG4108FQ0 the rest of the oligosaccharide is released intact. Cleaves the peptidoglycan connecting the daughter cells at the end of the cell division cycle, resulting in the separation of the two newly divided cells. Acts as an autolysin in penicillin-induced lysis CYD28_RS05565 ENOG4105D1W Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate (By similarity) CYD28_RS05570 ENOG4108R6K riboflavin synthase, subunit alpha CYD28_RS05575 ENOG4105C66 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity) CYD28_RS05580 ENOG4108UTT Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (By similarity) CYD28_RS05590 ENOG4105E8V Alpha Beta Hydrolase Fold protein CYD28_RS05615 ENOG4105N5T Radical SAM Protein CYD28_RS05620 ENOG410605W Major Facilitator CYD28_RS05625 ENOG4105C8T Leucyl-tRNA synthetase CYD28_RS05645 ENOG4105CBX hi0933 family CYD28_RS05655 ENOG4105I08 Pseudouridine synthase CYD28_RS05665 ENOG4107QSE Dipeptidase CYD28_RS05670 ENOG4105F0I Aminotransferase CYD28_RS05675 ENOG4108V15 phosphotransferase enzyme family CYD28_RS05680 ENOG4105CZ1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (By similarity) CYD28_RS05690 ENOG4105C8F Beta-lactamase domain protein CYD28_RS05710 ENOG4108NKM UPF0354 protein CYD28_RS05715 ENOG4108VDD TRNA binding domain protein CYD28_RS05725 ENOG4105DFU Cell wall formation (By similarity) CYD28_RS05730 ENOG4105MQN general stress protein CYD28_RS05740 ENOG4105CXR Phospho-2-dehydro-3-deoxyoctonate aldolase CYD28_RS05745 ENOG4105ETE Transcriptional regulator (LacI family CYD28_RS05755 ENOG4105F1V Acetoin utilization protein CYD28_RS05780 ENOG4105CKU formyltetrahydrofolate synthetase CYD28_RS05790 ENOG4105DA0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) (By similarity) CYD28_RS05800 ENOG4105C0R drug resistance transporter emrb qaca subfamily CYD28_RS05805 ENOG4105C0H protease CYD28_RS05810 ENOG4105F6E Acyl-transferase CYD28_RS05825 ENOG4108JQ1 Dehydrogenase CYD28_RS05835 ENOG4108X3M OsmC Ohr family protein CYD28_RS05840 ENOG4108QXE glycerophosphoryl diester phosphodiesterase CYD28_RS05845 ENOG4105G6W One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (By similarity) CYD28_RS05865 ENOG4105C3J Cysteine desulfurase CYD28_RS05870 ENOG4105D8I Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS (By similarity) CYD28_RS05875 ENOG4105EJ9 Membrane CYD28_RS05880 ENOG4108V1J Has antioxidant activity. Could remove peroxides or H(2)O(2) (By similarity) CYD28_RS05890 ENOG4105C6H Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction (By similarity) CYD28_RS05895 ENOG4107YZX Universal stress protein CYD28_RS05900 ENOG4105DCF alanine dehydrogenase CYD28_RS05905 ENOG4105DC7 peptidase M24 CYD28_RS05910 ENOG4105E8R UPF0173 metal-dependent hydrolase CYD28_RS05925 ENOG4105SFS phosphoesterase RecJ domain protein CYD28_RS05930 ENOG4105C0B DNA polymerase III (alpha subunit) CYD28_RS05935 ENOG4105C6K Malic enzyme CYD28_RS05940 ENOG4107QTG Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA (By similarity) CYD28_RS05945 ENOG4107QM9 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA (By similarity) CYD28_RS05950 ENOG4105CTQ phosphohexokinase CYD28_RS05955 ENOG4105CA9 Pyruvate kinase CYD28_RS05970 ENOG4105BZN citrate synthase CYD28_RS05975 ENOG4108HMX isocitrate dehydrogenase (NADP) CYD28_RS05980 ENOG4105DPZ Two component transcriptional regulator (Winged helix family CYD28_RS05985 ENOG4105BZU Histidine kinase CYD28_RS05990 ENOG4105C2M dna polymerase I CYD28_RS05995 ENOG4105ERD Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity) CYD28_RS06000 ENOG4108ZQD Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A (By similarity) CYD28_RS06005 ENOG4105C17 glyceraldehyde-3-phosphate dehydrogenase CYD28_RS06010 ENOG4108Z11 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes (By similarity) CYD28_RS06025 ENOG4105C22 threonyL-tRNA synthetase CYD28_RS06030 ENOG4108IQI permease CYD28_RS06035 ENOG4108UUX IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (By similarity) CYD28_RS06040 ENOG4105VJV 50s ribosomal protein L35 CYD28_RS06045 ENOG4108YZX Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity) CYD28_RS06050 ENOG4105U6W MutT NUDIX family protein CYD28_RS06060 ENOG4105DEA Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation CYD28_RS06065 ENOG4105CHN ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (By similarity) CYD28_RS06075 ENOG4105WHM Necessary for normal cell division and for the maintenance of normal septation (By similarity) CYD28_RS06080 ENOG4105C7E Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) (By similarity) CYD28_RS06090 ENOG4105D6W Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (By similarity) CYD28_RS06100 ENOG4105D52 delta-aminolevulinic acid dehydratase CYD28_RS06105 ENOG4105CDM Glutamate-1-semialdehyde aminotransferase CYD28_RS06115 ENOG4108R3E Dna-3-methyladenine glycosylase i CYD28_RS06120 ENOG4105CA4 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner (By similarity) CYD28_RS06125 ENOG4105DPM folylpolyglutamate synthase Dihydrofolate synthase CYD28_RS06135 ENOG4105W5Q DNA repair protein (RadC CYD28_RS06160 ENOG4105N3I Involved in formation and maintenance of cell shape (By similarity) CYD28_RS06170 ENOG4105KK9 This protein binds to 23S rRNA in the presence of protein L20 (By similarity) CYD28_RS06175 ENOG4105X36 (ribosomal) protein CYD28_RS06180 ENOG4105K46 50S ribosomal protein l27 CYD28_RS06185 ENOG4105C9R An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control CYD28_RS06190 ENOG41090I5 UPF0735 ACT domain-containing protein CYD28_RS06195 ENOG4105KA4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (By similarity) CYD28_RS06200 ENOG4105CKJ The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (By similarity) CYD28_RS06205 ENOG4105E2N Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity) CYD28_RS06210 ENOG4105C6U Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (By similarity) CYD28_RS06215 ENOG4105VIE preprotein translocase, subunit YajC CYD28_RS06220 ENOG4105C3D Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (By similarity) CYD28_RS06225 ENOG4105C2R Single-stranded-DNA-specific exonuclease (RecJ) CYD28_RS06230 ENOG4109003 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis (By similarity) CYD28_RS06235 ENOG4105CWR In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity) CYD28_RS06240 ENOG4108YYA Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity) CYD28_RS06245 ENOG4105C5C n-acetylmuramoyl-l-alanine amidase CYD28_RS06250 ENOG4105CUT histidyl-tRNA synthetase CYD28_RS06255 ENOG4105C9M aspartyl-trna synthetase CYD28_RS06265 ENOG4105CUZ uba thif-type nad fad binding protein CYD28_RS06270 ENOG4105D1H recombination factor protein RarA CYD28_RS06280 ENOG4105DEN Luciferase family CYD28_RS06285 ENOG4105C3J Cysteine desulfurase CYD28_RS06290 ENOG4105CCJ Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (By similarity) CYD28_RS06300 ENOG4105C7H Helicase, RecD TraA family CYD28_RS06305 ENOG4105CIM Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (By similarity) CYD28_RS06310 ENOG4105VBH UPF0297 protein CYD28_RS06315 ENOG4108Z08 Could be a nuclease that resolves Holliday junction intermediates in genetic recombination (By similarity) CYD28_RS06320 ENOG4105VPH UPF0473 protein CYD28_RS06330 ENOG4105XYU peptidase (U32 family) CYD28_RS06335 ENOG4105CFP Peptidase U32 CYD28_RS06340 ENOG4105DBI uridine monophosphokinase CYD28_RS06345 ENOG4108UKH Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides (By similarity) CYD28_RS06350 ENOG4105P4J Allophanate hydrolase, subunit 1 CYD28_RS06360 ENOG4105KM4 Acetyl-CoA carboxylase, biotin carboxyl carrier protein CYD28_RS06365 ENOG4105CER acetyl-CoA carboxylase biotin carboxylase CYD28_RS06370 ENOG4105E7W lamb ycsf family protein CYD28_RS06375 ENOG4105C5A transporter CYD28_RS06380 ENOG4105DUF Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively (By similarity) CYD28_RS06385 ENOG4108WJV had superfamily (subfamily IIIa) phosphatase CYD28_RS06390 ENOG4105CQW ribosome biogenesis GTPase YqeH CYD28_RS06395 ENOG4105E2X shikimate dehydrogenase CYD28_RS06400 ENOG410812S Rna-binding protein CYD28_RS06405 ENOG4108Z1W Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (By similarity) CYD28_RS06410 ENOG4108WF2 Metal Dependent Phosphohydrolase CYD28_RS06415 ENOG4105KEM Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (By similarity) CYD28_RS06420 ENOG4108D32 Methyltransferase CYD28_RS06425 ENOG4105KQC Competence protein CYD28_RS06430 ENOG4108UK2 deaminase CYD28_RS06435 ENOG4105EGY DNA internalization-related competence protein ComEC Rec2 CYD28_RS06440 ENOG4105TQK DNA polymerase iii, delta' subunit CYD28_RS06450 ENOG4105KQV Binds directly to 16S ribosomal RNA (By similarity) CYD28_RS06455 ENOG4105C4S Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (By similarity) CYD28_RS06460 ENOG4105CSA Coproporphyrinogen iii oxidase CYD28_RS06465 ENOG4105CI8 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons (By similarity) CYD28_RS06470 ENOG4105K90 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ CYD28_RS06475 ENOG4105CFG Acts as a chaperone (By similarity) CYD28_RS06480 ENOG4105BZ5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity) CYD28_RS06485 ENOG4105F59 Methylates ribosomal protein L11 (By similarity) CYD28_RS06490 ENOG4107TVK Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity) CYD28_RS06495 ENOG4105CIW Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (By similarity) CYD28_RS06505 ENOG4105F7J membrane-bound serine protease CYD28_RS06510 ENOG4105DI5 UPF0365 protein CYD28_RS06520 ENOG4105C9A Phoh family CYD28_RS06525 ENOG4105KGE Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA (By similarity) CYD28_RS06530 ENOG4107YR5 Diacylglycerol kinase CYD28_RS06540 ENOG4105CWT An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (By similarity) CYD28_RS06545 ENOG4108SAY Involved in DNA repair and RecF pathway recombination (By similarity) CYD28_RS06550 ENOG4105D9H Catalyzes the attachment of glycine to tRNA(Gly) (By similarity) CYD28_RS06560 ENOG4105CF9 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation (By similarity) CYD28_RS06570 ENOG4105DG1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (By similarity) CYD28_RS06580 ENOG4105EGD dinuclear metal center protein, YbgI family CYD28_RS06585 ENOG4105C1J atp-dependent rna helicase CYD28_RS06590 ENOG4105EFU Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (By similarity) CYD28_RS06595 ENOG4105FDK ABC transporter CYD28_RS06605 ENOG4105N80 Ferric uptake regulator, Fur family CYD28_RS06615 ENOG4105CK4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) CYD28_RS06620 ENOG4107RF6 penicillin-binding protein CYD28_RS06625 ENOG4105WDJ 50S ribosomal protein L33 CYD28_RS06630 ENOG4105MK2 5-formyltetrahydrofolate cyclo-ligase CYD28_RS06655 ENOG4105C5X domain protein CYD28_RS06670 ENOG4106855 Competence protein CYD28_RS06695 ENOG4105KHV Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity) CYD28_RS06700 ENOG4105D43 The glycine cleavage system catalyzes the degradation of glycine (By similarity) CYD28_RS06705 ENOG4107QK8 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor CYD28_RS06710 ENOG4107RGW The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor CYD28_RS06715 ENOG4105WZW rhodanese family CYD28_RS06720 ENOG4107S5Z Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domain of GcvH, an intermediate carrier during protein lipoylation (By similarity) CYD28_RS06735 ENOG4105DC7 peptidase M24 CYD28_RS06740 ENOG4105DRH Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (By similarity) CYD28_RS06750 ENOG4105CER acetyl-CoA carboxylase biotin carboxylase CYD28_RS06755 ENOG4108ZSR alkaline shock protein CYD28_RS06760 ENOG4105M7K Involved in the transcription termination process (By similarity) CYD28_RS06765 ENOG4105DVS Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (By similarity) CYD28_RS06770 ENOG41067QG Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (By similarity) CYD28_RS06780 ENOG4105XBY Regulates arginine biosynthesis genes (By similarity) CYD28_RS06785 ENOG4105C4F May be involved in recombinational repair of damaged DNA (By similarity) CYD28_RS06800 ENOG4105CPP Dehydrogenase, E1 component CYD28_RS06805 ENOG4105C7S Dehydrogenase CYD28_RS06810 ENOG4108Y6J UPF0403 protein CYD28_RS06815 ENOG4108QEG Membrane CYD28_RS06825 ENOG4105D42 Cleaves the N-terminal amino acid of tripeptides (By similarity) CYD28_RS06830 ENOG4105C7Q Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH (By similarity) CYD28_RS06850 ENOG4105D8W glucose-6-phosphate 1-dehydrogenase CYD28_RS06855 ENOG4105IES Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA (By similarity) CYD28_RS06860 ENOG4105II7 pyrroline-5-carboxylate reductase CYD28_RS06865 ENOG4105E1F short-chain dehydrogenase reductase CYD28_RS06875 ENOG4105CPC Aldo Keto reductase CYD28_RS06880 ENOG4108YZ4 nudix hydrolase CYD28_RS06885 ENOG4105I3K Ferric uptake regulator, Fur family CYD28_RS06890 ENOG4105C13 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity) CYD28_RS06900 ENOG4108KVX Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves (By similarity) CYD28_RS06905 ENOG4105K8I Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves (By similarity) CYD28_RS06915 ENOG4105CK6 Two component transcriptional regulator (Winged helix family CYD28_RS06920 ENOG4105BZU Histidine kinase CYD28_RS06940 ENOG4105C9U ATP-dependent DNA helicase RecQ CYD28_RS06945 ENOG4106BU8 elastin-binding protein ebpS CYD28_RS06955 ENOG4105E4T pyridine nucleotide-disulfide oxidoreductase CYD28_RS06960 ENOG4105HDK L-asparaginase CYD28_RS06965 ENOG4105CAT Cytidine monophosphate kinase CYD28_RS06970 ENOG4105CAV thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity) CYD28_RS06975 ENOG4105DKZ GTPase that plays an essential role in the late steps of ribosome biogenesis (By similarity) CYD28_RS06980 ENOG4105CSF NADPH-dependent glycerol-3-phosphate dehydrogenase CYD28_RS06985 ENOG4105K70 DNA-binding protein CYD28_RS07000 ENOG4105DDZ Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) (By similarity) CYD28_RS07005 ENOG4105EAH synthase CYD28_RS07010 ENOG4108UGX Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity) CYD28_RS07015 ENOG4105D10 5-enolpyruvylshikimate-3-phosphate phospholyase CYD28_RS07020 ENOG4105D49 3-dehydroquinate synthase CYD28_RS07025 ENOG4105CMY 5-enolpyruvylshikimate-3-phosphate synthase CYD28_RS07035 ENOG4105QKB UPF0302 protein CYD28_RS07050 ENOG4108ZPQ MazG nucleotide pyrophosphohydrolase CYD28_RS07055 ENOG4105CPK Glycosyl transferase (Group 1 CYD28_RS07060 ENOG4105D4J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate CYD28_RS07070 ENOG4105DVT helicase CYD28_RS07075 ENOG4105C5S asparaginyl-tRNA synthetase CYD28_RS07085 ENOG4105CSM endonuclease III CYD28_RS07095 ENOG4105BZ4 penicillin-binding protein CYD28_RS07100 ENOG4108UI2 Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation (By similarity) CYD28_RS07110 ENOG4108UKS UPF0398 protein CYD28_RS07115 ENOG4105XWG Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation (By similarity) CYD28_RS07125 ENOG4105C4H Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA (By similarity) CYD28_RS07135 ENOG410890F Dynamin family CYD28_RS07175 ENOG4106QQ5 PBS lyase HEAT domain protein repeat-containing protein CYD28_RS07180 ENOG4106QQ5 PBS lyase HEAT domain protein repeat-containing protein CYD28_RS07185 ENOG4108Y6J UPF0403 protein CYD28_RS07190 ENOG4105C0V Provides the sole de novo source of dTMP for DNA biosynthesis (By similarity) CYD28_RS07195 ENOG4108YYV Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis (By similarity) CYD28_RS07205 ENOG4108HW8 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity) CYD28_RS07210 ENOG4105E0X reductase CYD28_RS07215 ENOG4105C5Y PTS System CYD28_RS07220 ENOG4106E6V UPF0346 protein CYD28_RS07225 ENOG4105CN1 protease CYD28_RS07235 ENOG4105DVQ Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (By similarity) CYD28_RS07240 ENOG410841Q phosphoesterase PA-phosphatase related protein CYD28_RS07245 ENOG4105CK6 Two component transcriptional regulator (Winged helix family CYD28_RS07250 ENOG4105GR3 Histidine kinase CYD28_RS07255 ENOG4105C7P 2-oxoglutarate dehydrogenase, E1 CYD28_RS07260 ENOG4105C7S Dehydrogenase CYD28_RS07280 ENOG4105GMT ATPase associated with various cellular activities aaa_5 CYD28_RS07285 ENOG4107T89 von Willebrand factor, type A CYD28_RS07290 ENOG4105CWM branched-chain amino acid transport system II carrier protein CYD28_RS07295 ENOG4105CDW Resistance protein CYD28_RS07305 ENOG410855V Acylphosphatase CYD28_RS07315 ENOG4105VEQ Cold shock protein CYD28_RS07325 ENOG4105CU5 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (By similarity) CYD28_RS07330 ENOG4108XFP Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (By similarity) CYD28_RS07335 ENOG4105CH2 amidohydrolase CYD28_RS07340 ENOG4105DMJ Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate (By similarity) CYD28_RS07345 ENOG4105DUK Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (By similarity) CYD28_RS07350 ENOG4105CDP Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (By similarity) CYD28_RS07355 ENOG4105CM3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (By similarity) CYD28_RS07365 ENOG4105C5H ABC transporter CYD28_RS07370 ENOG4105QNR S1 RNA binding domain protein CYD28_RS07375 ENOG4105CVA phosphate CYD28_RS07380 ENOG4105C8U phosphate abc transporter CYD28_RS07385 ENOG4105E2Z phosphate ABC transporter (Permease CYD28_RS07390 ENOG4105BZY Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS07395 ENOG4108UTW Plays a role in the regulation of phosphate uptake CYD28_RS07400 ENOG4105DPN Oligoendopeptidase f CYD28_RS07415 ENOG4108KP7 hydrolase CYD28_RS07420 ENOG4108TV1 Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor (By similarity) CYD28_RS07425 ENOG4108RMH femAB family CYD28_RS07435 ENOG4105F6H The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate (By similarity) CYD28_RS07445 ENOG4108ZGB N-(5'-phosphoribosyl)anthranilate isomerase CYD28_RS07450 ENOG4105DK0 Indole-3-glycerol phosphate synthase CYD28_RS07455 ENOG4108I0Q anthranilate phosphoribosyltransferase CYD28_RS07460 ENOG4105DDQ anthranilate synthase CYD28_RS07465 ENOG4105CRQ synthase (Component I) CYD28_RS07470 ENOG4105DER m42 family CYD28_RS07475 ENOG4105EVN Prephenate dehydrogenase CYD28_RS07480 ENOG4105CQ3 Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity) CYD28_RS07485 ENOG41069HH 4-oxalocrotonate tautomerase CYD28_RS07490 ENOG4108RCF TRANSCRIPTIONal CYD28_RS07495 ENOG4108HW8 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity) CYD28_RS07500 ENOG4105FF5 Membrane CYD28_RS07510 ENOG4105CID antiterminator CYD28_RS07520 ENOG4105C24 DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity) CYD28_RS07525 ENOG4105C7D DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity) CYD28_RS07530 ENOG4105K7Z Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP (By similarity) CYD28_RS07545 ENOG4108I0Z Aconitate hydratase CYD28_RS07550 ENOG4105C94 Transporter CYD28_RS07555 ENOG4105M2E Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell (By similarity) CYD28_RS07560 ENOG4105EYH Exonuclease CYD28_RS07565 ENOG4107RFY SbcCD D subunit CYD28_RS07585 ENOG4105VPS UPF0291 protein CYD28_RS07595 ENOG4105DS7 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair (By similarity) CYD28_RS07600 ENOG4106UY4 Inherit from COG: Scp-like extracellular CYD28_RS07605 ENOG4107SJ1 Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides (By similarity) CYD28_RS07610 ENOG41082QR Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (By similarity) CYD28_RS07620 ENOG4105CH6 catalase CYD28_RS07625 ENOG4108IQI permease CYD28_RS07640 ENOG4105D5I Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate (By similarity) CYD28_RS07645 ENOG4108IYI Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine (By similarity) CYD28_RS07650 ENOG4105D6E homoserine dehydrogenase CYD28_RS07655 ENOG4105CFH Aspartokinase CYD28_RS07685 ENOG4108S01 response regulator CYD28_RS07690 ENOG4105BZU Histidine kinase CYD28_RS07700 ENOG4108M15 ABC transporter CYD28_RS07705 ENOG4105CQX Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol (By similarity) CYD28_RS07775 ENOG4105XSJ toxin secretion phage lysis holin CYD28_RS07810 ENOG4108FKH Transglycosylase SLT domain CYD28_RS07855 ENOG4105CCQ Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity) CYD28_RS07940 ENOG4106CVF DNA replication protein CYD28_RS07965 ENOG4108UUM single-stranded DNA-binding protein CYD28_RS08025 ENOG4105C5F glutamine synthetase CYD28_RS08030 ENOG4105KV4 Transcriptional regulator CYD28_RS08035 ENOG4105CXI aluminum resistance protein CYD28_RS08040 ENOG4105C1N GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (By similarity) CYD28_RS08045 ENOG4108V06 Glutathione peroxidase CYD28_RS08050 ENOG4105KW8 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (By similarity) CYD28_RS08055 ENOG4105DKX Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (By similarity) CYD28_RS08065 ENOG4105C6V Glycerol-3-phosphate dehydrogenase CYD28_RS08070 ENOG4108HMR Key enzyme in the regulation of glycerol uptake and metabolism (By similarity) CYD28_RS08085 ENOG4105DC6 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity) CYD28_RS08090 ENOG4105D86 that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity) CYD28_RS08105 ENOG4105CIW Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (By similarity) CYD28_RS08115 ENOG4105K7W phage-related replication protein CYD28_RS08120 ENOG4105DQU oxidoreductase, subunit beta CYD28_RS08125 ENOG4105DI2 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein CYD28_RS08130 ENOG4105D48 metallophosphoesterase CYD28_RS08140 ENOG4105E4Y Endoribonuclease that initiates mRNA decay (By similarity) CYD28_RS08155 ENOG4105KEG ribosomal-protein-alanine acetyltransferase CYD28_RS08165 ENOG4105C68 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (By similarity) CYD28_RS08170 ENOG4105CEV competence damage-inducible protein CYD28_RS08175 ENOG4105BZQ cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase CYD28_RS08190 ENOG4108RKS Short-chain dehydrogenase reductase Sdr CYD28_RS08205 ENOG4105FDP GntR family transcriptional regulator CYD28_RS08210 ENOG4105CNU cell division protein FtsK CYD28_RS08215 ENOG4105CN5 Metallo-Beta-Lactamase CYD28_RS08220 ENOG4105C62 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction (By similarity) CYD28_RS08225 ENOG4105K77 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (By similarity) CYD28_RS08230 ENOG4105DTN riboflavin biosynthesis protein ribF CYD28_RS08235 ENOG4105D0T Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity) CYD28_RS08240 ENOG4105KG7 Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA (By similarity) CYD28_RS08250 ENOG4105VHM ribosomal protein CYD28_RS08255 ENOG4105VZN Nucleic-acid-binding protein implicated in transcription termination CYD28_RS08260 ENOG4105CHV Transcription elongation factor NusA CYD28_RS08265 ENOG4105K7D Required for maturation of 30S ribosomal subunits (By similarity) CYD28_RS08270 ENOG4105DE5 Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity) CYD28_RS08275 ENOG4105C90 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS (By similarity) CYD28_RS08285 ENOG4105KNE Phosphatidate cytidylyltransferase CYD28_RS08290 ENOG4105CR3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids (By similarity) CYD28_RS08295 ENOG4108VCV Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (By similarity) CYD28_RS08300 ENOG4105C41 Catalyzes the reversible phosphorylation of UMP to UDP (By similarity) CYD28_RS08305 ENOG4105CU7 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity) CYD28_RS08310 ENOG4105CE9 30S ribosomal protein S2 CYD28_RS08315 ENOG4105EUM DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor (By similarity) CYD28_RS08320 ENOG4105C4N this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis (By similarity) CYD28_RS08325 ENOG4108R5P Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery (By similarity) CYD28_RS08330 ENOG4105C13 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity) CYD28_RS08335 ENOG4107QXI Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs (By similarity) CYD28_RS08340 ENOG4105C73 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity) CYD28_RS08345 ENOG4105C79 DNA protecting protein DprA CYD28_RS08355 ENOG4105CH8 Succinyl-CoA ligase ADP-forming subunit alpha CYD28_RS08360 ENOG4105CMV Succinyl-CoA synthetase subunit beta CYD28_RS08365 ENOG4108UH2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarity) CYD28_RS08375 ENOG4105EJV Membrane CYD28_RS08385 ENOG4108YY1 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity) CYD28_RS08390 ENOG4105D6X Specifically methylates guanosine-37 in various tRNAs (By similarity) CYD28_RS08395 ENOG4107Z8R An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity) CYD28_RS08400 ENOG4105K5M 30s ribosomal protein S16 CYD28_RS08410 ENOG4105VBN Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein (By similarity) CYD28_RS08415 ENOG4105CCP Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) CYD28_RS08420 ENOG4105CDB Required for chromosome condensation and partitioning (By similarity) CYD28_RS08425 ENOG4108ZBM Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity) CYD28_RS08430 ENOG4105VNB Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) CYD28_RS08435 ENOG4105CHR reductase CYD28_RS08440 ENOG4105CJF Malonyl coA-acyl carrier protein transacylase CYD28_RS08445 ENOG4105C6B Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA (By similarity) CYD28_RS08450 ENOG4108VVV Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism (By similarity) CYD28_RS08455 ENOG4105CB5 ATP-dependent DNA helicase recG CYD28_RS08460 ENOG4107Y9E nuclease CYD28_RS08465 ENOG4105DP4 dak2 domain fusion protein ylov CYD28_RS08470 ENOG4108ZAA Alkaline-shock protein CYD28_RS08475 ENOG4105VB9 50S ribosomal protein l28 CYD28_RS08480 ENOG4105FJ0 thiamine CYD28_RS08485 ENOG4105DJV ribulose-phosphate 3-epimerase CYD28_RS08490 ENOG4105E06 May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (By similarity) CYD28_RS08500 ENOG4108ZF3 Phosphatase CYD28_RS08505 ENOG4105C55 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs CYD28_RS08510 ENOG4105CYJ ribosomal RNA small subunit methyltransferase B CYD28_RS08515 ENOG4105CAE Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (By similarity) CYD28_RS08520 ENOG4108Z02 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity) CYD28_RS08530 ENOG4105C25 Primosomal protein n' CYD28_RS08535 ENOG4105CJS Phosphopantothenoylcysteine decarboxylase CYD28_RS08540 ENOG41067UH Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity) CYD28_RS08545 ENOG4108UHA Essential for recycling GMP and indirectly, cGMP (By similarity) CYD28_RS08550 ENOG4105F23 Fibronectin-binding protein CYD28_RS08565 ENOG41065E1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) (By similarity) CYD28_RS08570 ENOG4106EG9 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity) CYD28_RS08575 ENOG4105CU6 carbamoyl-phosphate synthetase ammonia chain CYD28_RS08580 ENOG4105C1M carbamoyl-phosphate synthetase glutamine chain CYD28_RS08585 ENOG4105CD3 dihydroorotase CYD28_RS08590 ENOG4105CXT aspartate transcarbamylase CYD28_RS08600 ENOG4108UK1 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant (By similarity) CYD28_RS08605 ENOG4105C34 Pseudouridine synthase CYD28_RS08610 ENOG4105M02 This protein specifically catalyzes the removal of signal peptides from prolipoproteins (By similarity) CYD28_RS08615 ENOG4105VRS hydrolase family 18 CYD28_RS08625 ENOG4105CGD Nad-dependent epimerase dehydratase CYD28_RS08630 ENOG4105C07 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) (By similarity) CYD28_RS08645 ENOG41067XK integral membrane protein CYD28_RS08650 ENOG4105VR5 Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA (By similarity) CYD28_RS08655 ENOG4105DFA alanine racemase domain protein CYD28_RS08660 ENOG4105DBW Multi-copper polyphenol oxidoreductase laccase CYD28_RS08665 ENOG4105CDK Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity (By similarity) CYD28_RS08670 ENOG4105CIT This protein may be involved in anomalous filament growth. May be a component of the septum (By similarity) CYD28_RS08675 ENOG4108W8M Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex (By similarity) CYD28_RS08680 ENOG4105DMZ Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (By similarity) CYD28_RS08685 ENOG4105CPY First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity) CYD28_RS08690 ENOG4105CJN penicillin-binding protein CYD28_RS08695 ENOG41068DC Essential cell division protein (By similarity) CYD28_RS08700 ENOG4105CGJ Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (By similarity) CYD28_RS08705 ENOG4108V6E Cell division protein mraZ CYD28_RS08710 ENOG41074B2 UPF0747 protein CYD28_RS08715 ENOG4108YG3 N-acetyltransferase CYD28_RS08760 ENOG4108V82 Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP dITP to their respective monophosphate derivatives. Might exclude non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions (By similarity) CYD28_RS08765 ENOG4105F03 Provides the (R)-glutamate required for cell wall biosynthesis (By similarity) CYD28_RS08770 ENOG4105E33 succinate dehydrogenase CYD28_RS08780 ENOG4108NU2 Succinate dehydrogenase cytochrome b558 subunit CYD28_RS08785 ENOG4105CII The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision (By similarity) CYD28_RS08790 ENOG4105K63 Thioredoxin CYD28_RS08795 ENOG4105C98 muts2 protein CYD28_RS08800 ENOG4105DCG PHP domain protein CYD28_RS08810 ENOG410687F Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division (By similarity) CYD28_RS08815 ENOG4107FSS Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarity) CYD28_RS08820 ENOG4105C6A phenylalanyl-tRNA synthetase (beta subunit) CYD28_RS08825 ENOG4105CSS phenylalanyl-tRNA synthetase (alpha subunit) CYD28_RS08830 ENOG4108RWN rrna methyltransferase CYD28_RS08835 ENOG41067VY 50S ribosomal protein L32 CYD28_RS08850 ENOG4105CDE UPF0348 protein CYD28_RS08855 ENOG4108ZEF Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity) CYD28_RS08860 ENOG4106H78 methyltransferase CYD28_RS08870 ENOG4105WUC UPF0298 protein CYD28_RS08885 ENOG4106UY4 Inherit from COG: Scp-like extracellular CYD28_RS08895 ENOG4105F1R Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group (By similarity) CYD28_RS08900 ENOG4107SGF Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group (By similarity) CYD28_RS08905 ENOG4108JIJ Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second (By similarity) CYD28_RS08910 ENOG4105CNI cell division protein FtsW CYD28_RS08915 ENOG4105ZPI UPF0358 protein CYD28_RS08930 ENOG4105CI3 gtp-binding protein typa CYD28_RS08940 ENOG4105ECY inositol monophosphatase CYD28_RS08945 ENOG4108WQ8 UPF0637 protein CYD28_RS08950 ENOG4105C56 H( )-stimulated, divalent metal cation uptake system (By similarity) CYD28_RS08965 ENOG4107RUE extracellular solute-binding protein family 1 CYD28_RS08970 ENOG4105D38 putrescine abc transporter CYD28_RS08980 ENOG4105C53 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS08985 ENOG4105CFF transcriptional regulator CYD28_RS08990 ENOG4105WBI UPF0223 protein CYD28_RS08995 ENOG4107QN2 dihydrolipoyl dehydrogenase CYD28_RS09000 ENOG4105C7S Dehydrogenase CYD28_RS09005 ENOG4105CPP Dehydrogenase, E1 component CYD28_RS09020 ENOG4108Z02 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity) CYD28_RS09025 ENOG4106148 UPF0356 protein CYD28_RS09030 ENOG4105CN5 Metallo-Beta-Lactamase CYD28_RS09040 ENOG4105WD1 Membrane CYD28_RS09045 ENOG4107ZYR domain protein CYD28_RS09075 ENOG4105BZ3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) (By similarity) CYD28_RS09080 ENOG4105KRI phosphocarrier protein (HPr CYD28_RS09090 ENOG4105DR4 Methyltransferase CYD28_RS09110 ENOG4108JJB ABC transporter CYD28_RS09115 ENOG4105EK6 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates (By similarity) CYD28_RS09120 ENOG4105C12 Phosphoribosylglycinamide synthetase CYD28_RS09125 ENOG4105DC1 bifunctional purine biosynthesis protein purh CYD28_RS09130 ENOG4108V3E phosphoribosylglycinamide formyltransferase CYD28_RS09135 ENOG4105CXB phosphoribosylaminoimidazole synthetase CYD28_RS09140 ENOG4105CBA glutamine phosphoribosylpyrophosphate amidotransferase CYD28_RS09145 ENOG4108JIU phosphoribosylformylglycinamidine synthase ii CYD28_RS09150 ENOG4105D21 Phosphoribosylformylglycinamidine synthase I CYD28_RS09155 ENOG4105VR9 phosphoribosylformylglycinamidine synthase CYD28_RS09160 ENOG4105C8V SAICAR synthetase CYD28_RS09165 ENOG4105CY8 phosphoribosylaminoimidazole carboxylase atpase subunit CYD28_RS09170 ENOG4108UM6 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) (By similarity) CYD28_RS09175 ENOG4105CN0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate (By similarity) CYD28_RS09200 ENOG4105E2S oxidase) subunit II CYD28_RS09205 ENOG4105BZ9 Cytochrome C oxidase, subunit I CYD28_RS09210 ENOG4105CCU oxidase (Subunit III) CYD28_RS09215 ENOG41060D1 Quinol oxidase CYD28_RS09225 ENOG4105FQP Beta-lactamase CYD28_RS09230 ENOG4108KGH TRANSCRIPTIONal CYD28_RS09240 ENOG41082BV acetyltransferase CYD28_RS09245 ENOG4108FQ0 the rest of the oligosaccharide is released intact. Cleaves the peptidoglycan connecting the daughter cells at the end of the cell division cycle, resulting in the separation of the two newly divided cells. Acts as an autolysin in penicillin-induced lysis CYD28_RS09260 ENOG4108TGC Acyltransferase CYD28_RS09265 ENOG4105CHM Aminotransferase CYD28_RS09270 ENOG4108IPT Naphthoate synthase CYD28_RS09275 ENOG4107J5P Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). Is also able to catalyze the hydrolysis of the thioester bond in palmitoyl-CoA in vitro (By similarity) CYD28_RS09280 ENOG4105C4A Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) (By similarity) CYD28_RS09285 ENOG4105E4F Isochorismate synthase CYD28_RS09290 ENOG4105EIS 1,4-dihydroxy-2-naphthoate octaprenyltransferase CYD28_RS09375 ENOG4107TS3 membrane protein, TerC CYD28_RS09380 ENOG4105C8A Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP (By similarity) CYD28_RS09390 ENOG4107EEN Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan (By similarity) CYD28_RS09395 ENOG4108QBV Monogalactosyldiacylglycerol synthase CYD28_RS09400 ENOG4108PK2 permease that is required for glycolipid anchoring of LTA. May facilitate the transport of diglucosyl- diacylglycerol (Glc2-DAG) from the inner to the outer leaflet of the cytoplasmic membrane, delivering Glc2-DAG as a substrate for LTA synthesis, thereby generating glycolipid-anchored LTA. Appears to play an important role in virulence CYD28_RS09420 ENOG4105C02 permease CYD28_RS09435 ENOG4105CJW magnesium transporter CYD28_RS09440 ENOG4105EMS pseudouridine synthase CYD28_RS09445 ENOG4105F91 Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus (By similarity) CYD28_RS09455 ENOG4106EFP UPF0738 protein CYD28_RS09460 ENOG4105MIX Adenylate cyclase CYD28_RS09465 ENOG4108Z18 K06886 hemoglobin CYD28_RS09470 ENOG4105T58 Dithiol-disulfide isomerase CYD28_RS09475 ENOG4105DPN Oligoendopeptidase f CYD28_RS09485 ENOG4108SQ7 Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis CYD28_RS09490 ENOG41090SU Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress (By similarity) CYD28_RS09495 ENOG4105C31 Tryptophanyl-tRNA synthetase CYD28_RS09505 ENOG4108J59 Extracellular solute-binding protein, family 5 CYD28_RS09510 ENOG4108JQ7 (ABC) transporter CYD28_RS09520 ENOG4105C2T Binding-protein-dependent transport systems, inner membrane component CYD28_RS09525 ENOG4105CJM Binding-protein-dependent transport systems, inner membrane component CYD28_RS09535 ENOG4105C0Q Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP (By similarity) CYD28_RS09540 ENOG4105CCZ Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids (By similarity) CYD28_RS09550 ENOG4105C2Z ATP-dependent CLP protease ATP-binding subunit CYD28_RS09565 ENOG4108KP7 hydrolase CYD28_RS09570 ENOG4107QMW pyridine nucleotide-disulfide oxidoreductase CYD28_RS09575 ENOG4106BKT UPF0344 protein CYD28_RS09585 ENOG4105ERH Fumarylacetoacetate hydrolase CYD28_RS09590 ENOG4107R2I The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domain is required for chi fragment generation CYD28_RS09595 ENOG4105C5N The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination CYD28_RS09615 ENOG4107QYV phosphohexose isomerase CYD28_RS09620 ENOG4105CDH Citrulline--aspartate ligase CYD28_RS09625 ENOG4105CH7 arginosuccinase CYD28_RS09630 ENOG4107VXM glycerophosphoryl diester phosphodiesterase CYD28_RS09635 ENOG4105D82 Glutamate dehydrogenase CYD28_RS09640 ENOG4105C8Y Acetylornithine aminotransferase CYD28_RS09645 ENOG4105CCY NADH flavin oxidoreductase, NADH oxidase CYD28_RS09650 ENOG41060GV RNA binding s1 domain protein CYD28_RS09655 ENOG4108R5K PPIases accelerate the folding of proteins (By similarity) CYD28_RS09665 ENOG4105D65 subunit l CYD28_RS09675 ENOG4105MKQ Monovalent cation H antiporter subunit C CYD28_RS09680 ENOG4108JPZ Monovalent cation H antiporter subunit D CYD28_RS09685 ENOG4105SC1 monovalent cation H antiporter subunit E CYD28_RS09690 ENOG4105W4C monovalent cation H antiporter subunit F CYD28_RS09695 ENOG4105KJM monovalent cation h antiporter subunit g CYD28_RS09705 ENOG4105KA0 thioesterase Superfamily protein CYD28_RS09710 ENOG4105D3Y Na H antiporter CYD28_RS09715 ENOG4105BZ6 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (By similarity) CYD28_RS09720 ENOG4105CEP NADH dehydrogenase CYD28_RS09725 ENOG4108YX9 iron--sulfur cluster insertion protein erpA CYD28_RS09730 ENOG4105ZKE UPF0349 protein CYD28_RS09745 ENOG41083MR nifu domain-containing protein CYD28_RS09755 ENOG4108M4D D-alanyl-lipoteichoic acid biosynthesis protein DltD CYD28_RS09760 ENOG4106C1H Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Activated D-alanyl-Dcp donates its D-alanyl substituent to membrane-associated LTA (By similarity) CYD28_RS09765 ENOG4105CK0 Membrane bOund o-acyl transferase mboat family protein CYD28_RS09770 ENOG4108IQD Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity) CYD28_RS09785 ENOG4105D4U had-superfamily hydrolase, subfamily iia CYD28_RS09800 ENOG4105MMD transcriptional regulator CYD28_RS09805 ENOG4105C0G Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives (By similarity) CYD28_RS09810 ENOG4107R8B 5'-nucleotidase CYD28_RS09820 ENOG4105I3N Conserved Protein CYD28_RS09825 ENOG4105EA8 2-Nitropropane dioxygenase CYD28_RS09835 ENOG4105DIW FeS assembly protein SUFB CYD28_RS09840 ENOG4108UNV SUF system FeS assembly protein, NifU family CYD28_RS09845 ENOG4105C9B Cysteine desulfurase CYD28_RS09850 ENOG4105JRK feS assembly protein SufD CYD28_RS09855 ENOG4105C3K feS assembly ATPase SufC CYD28_RS09870 ENOG41061M1 UPF0337 protein CYD28_RS09875 ENOG4105D01 (LipO)protein CYD28_RS09880 ENOG4108UMI ABC transporter, permease CYD28_RS09885 ENOG4108JEI Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (By similarity) CYD28_RS09900 ENOG4105KE9 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity) CYD28_RS09905 ENOG41080E8 Transcriptional regulator, Spx MgsR family CYD28_RS09910 ENOG4105SZ6 Thioredoxin CYD28_RS09920 ENOG4105FF2 Type I DHQase CYD28_RS09925 ENOG4108ZHJ Organic hydroperoxide resistance protein CYD28_RS09935 ENOG4108ZUB Lysine exporter protein (Lyse ygga) CYD28_RS09940 ENOG4105CVJ phosphoglycerate mutase CYD28_RS09980 ENOG4108RTV Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol (By similarity) CYD28_RS09985 ENOG4105K7W phage-related replication protein CYD28_RS10015 ENOG4108UH4 Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity) CYD28_RS10020 ENOG4105C40 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs (By similarity) CYD28_RS10030 ENOG4105XZU Preprotein translocase, subunit SecG CYD28_RS10040 ENOG4105C70 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (By similarity) CYD28_RS10045 ENOG4105CJI Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity) CYD28_RS10050 ENOG4105CP7 Triose-phosphate isomerase CYD28_RS10055 ENOG4105BZA Phosphoglycerate kinase CYD28_RS10060 ENOG4105C17 glyceraldehyde-3-phosphate dehydrogenase CYD28_RS10085 ENOG4105ECP epimerase CYD28_RS10095 ENOG4105CCQ Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity) CYD28_RS10105 ENOG4105CIE May be required for sporulation (By similarity) CYD28_RS10110 ENOG4105CHW UPF0052 protein CYD28_RS10115 ENOG4105C21 Displays ATPase and GTPase activities (By similarity) CYD28_RS10120 ENOG4105C3M thioredoxin reductase CYD28_RS10130 ENOG4108S4C acetyltransferase CYD28_RS10135 ENOG4105C3B Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (By similarity) CYD28_RS10140 ENOG4105D1C Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion (By similarity) CYD28_RS10145 ENOG4105C5U The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate (By similarity) CYD28_RS10150 ENOG4105CCW damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage (By similarity) CYD28_RS10165 ENOG4105E1F short-chain dehydrogenase reductase CYD28_RS10170 ENOG41068JE domain protein CYD28_RS10180 ENOG4105CI6 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving CYD28_RS10185 ENOG4105MS2 ribosomal subunit Interface protein CYD28_RS10190 ENOG41081UC Inherit from COG: Competence protein CYD28_RS10205 ENOG4108ZK7 protein family UPF0029, Impact, N-terminal protein CYD28_RS10210 ENOG4105ESV Glycosyl transferase, family 4 CYD28_RS10215 ENOG4105BZU Histidine kinase CYD28_RS10230 ENOG4105D42 Cleaves the N-terminal amino acid of tripeptides (By similarity) CYD28_RS10235 ENOG4105BZW Glycerate kinase CYD28_RS10255 ENOG4105D4A Cell wall formation (By similarity) CYD28_RS10275 ENOG4108IPW abc transporter atp-binding protein CYD28_RS10280 ENOG4105CM4 permease protein CYD28_RS10285 ENOG4105DHS permease protein CYD28_RS10290 ENOG4105E05 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity) CYD28_RS10295 ENOG4105BZH Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity) CYD28_RS10300 ENOG4105G3E Probably involved in ribonucleotide reductase function (By similarity) CYD28_RS10310 ENOG4105CSD Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) (By similarity) CYD28_RS10315 ENOG4105DUX Transporter CYD28_RS10320 ENOG4109050 May catalyze the ATP-dependent phosphorylation of lipids other than diacylglycerol (DAG) CYD28_RS10325 ENOG4108ZIE 5 nucleotidase deoxy cytosolic type C CYD28_RS10330 ENOG4105CIH Imidazole acetol-phosphate transaminase CYD28_RS10335 ENOG4105DUX Transporter CYD28_RS10340 ENOG4105E90 ABC transporter CYD28_RS10345 ENOG4108IJ8 ABC transporter CYD28_RS10350 ENOG4105C9U ATP-dependent DNA helicase RecQ CYD28_RS10355 ENOG4105C5H ABC transporter CYD28_RS10365 ENOG4105E0M Sulfatase CYD28_RS10370 ENOG4107R7A Allophanate hydrolase subunit 2 CYD28_RS10375 ENOG4105P4J Allophanate hydrolase, subunit 1 CYD28_RS10395 ENOG4105DDQ anthranilate synthase CYD28_RS10400 ENOG4105FD2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) (By similarity) CYD28_RS10405 ENOG4107ZAE 6-carboxy-5,6,7,8-tetrahydropterin synthase CYD28_RS10410 ENOG4105EIZ Catalyzes the conversion of 6-carboxy-5,6,7,8- tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG) (By similarity) CYD28_RS10420 ENOG4105CKK Glycosyl transferase, family 2 CYD28_RS10435 ENOG4105C37 (CBS) domain CYD28_RS10440 ENOG4105DM4 PTS System CYD28_RS10445 ENOG4105DE4 1-phosphofructokinase CYD28_RS10450 ENOG4105E98 transcriptional regulator DeoR family CYD28_RS10455 ENOG4108Z66 YbaK ebsC protein CYD28_RS10465 ENOG4105DP8 Major facilitator superfamily MFS_1 CYD28_RS10495 ENOG4107QPK )-transporter CYD28_RS10505 ENOG4105CKI cobalamin synthesis protein CYD28_RS10510 ENOG41083AI transcriptional regulator), MarR family CYD28_RS10515 ENOG4108JJ8 (ABC) transporter CYD28_RS10520 ENOG4108JJ9 ABC, transporter CYD28_RS10525 ENOG4105DWR Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin (By similarity) CYD28_RS10535 ENOG4107XJU UPF0178 protein CYD28_RS10540 ENOG4108URH decarboxylase CYD28_RS10560 ENOG4105WQG acetyltransferase CYD28_RS10570 ENOG4105SXS Protein of unknown function (DUF456) CYD28_RS10605 ENOG4105CDY transcriptional regulatory protein CYD28_RS10615 ENOG4108DMH HTH_ARAC CYD28_RS10625 ENOG4105VRS hydrolase family 18 CYD28_RS10630 ENOG4105CJ3 phosphate transporter CYD28_RS10635 ENOG4107GRR phosphate transport regulator CYD28_RS10645 ENOG4105C19 ABC transporter CYD28_RS10650 ENOG4105EWM Histidine kinase CYD28_RS10655 ENOG4105CJZ response regulator CYD28_RS10675 ENOG4108K88 Membrane CYD28_RS10685 ENOG4105VDH Dihydroxyacetone kinase CYD28_RS10695 ENOG4105CMT Dihydroxyacetone kinase CYD28_RS10700 ENOG4105EHG Permease protein CYD28_RS10705 ENOG4105DQ5 transport system permease protein CYD28_RS10710 ENOG4105E0A ABC, transporter CYD28_RS10715 ENOG410749K Uncharacterized protein conserved in bacteria (DUF2179) CYD28_RS10725 ENOG4107SJB teichoic acid biosynthesis CYD28_RS10735 ENOG4105BZ1 (ABC) transporter CYD28_RS10750 ENOG4107YSK Glycerol-3-phosphate cytidylyltransferase CYD28_RS10770 ENOG4105EY8 ABC transporter CYD28_RS10775 ENOG4108UHC Glycosyl transferase, wecb taga cpsf family CYD28_RS10790 ENOG4107R5H iron (metal) dependent repressor, dtxr family CYD28_RS10795 ENOG4105EEQ Na H antiporter CYD28_RS10815 ENOG4105KJM monovalent cation h antiporter subunit g CYD28_RS10820 ENOG410684G monovalent cation H antiporter subunit F CYD28_RS10825 ENOG4105IMY monovalent cation H antiporter subunit E CYD28_RS10830 ENOG4108JPZ Monovalent cation H antiporter subunit D CYD28_RS10840 ENOG4108PMQ Na H antiporter MnhB subunit-related protein CYD28_RS10845 ENOG4105C8S subunit m CYD28_RS10905 ENOG4108VXP Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress (By similarity) CYD28_RS10910 ENOG4105EHG Permease protein CYD28_RS10915 ENOG4105JKQ Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC (By similarity) CYD28_RS10935 ENOG4105C75 arginyL-tRNA synthetase CYD28_RS10985 ENOG4105KEG ribosomal-protein-alanine acetyltransferase CYD28_RS11005 ENOG4105CJ1 ABC, transporter CYD28_RS11025 ENOG41062JF Transcriptional regulator CYD28_RS11030 ENOG4105C57 major facilitator superfamily CYD28_RS11080 ENOG4108XFG YwhD family CYD28_RS11085 ENOG4105DCI Phosphohydrolase CYD28_RS11095 ENOG4108WS4 fmn reductase CYD28_RS11100 ENOG4105CPC Aldo Keto reductase CYD28_RS11110 ENOG4107QN2 dihydrolipoyl dehydrogenase CYD28_RS11120 ENOG4105QAT UPF0741 protein CYD28_RS11145 ENOG4105JGI Catalyzes the amidotransfer (transamidation) of the octanoyl moiety from octanoyl-GcvH to the lipoyl domain of the E2 subunit of lipoate-dependent enzymes (By similarity) CYD28_RS11150 ENOG4108IJ2 phosphate acetyltransferase CYD28_RS11155 ENOG4107JTW chlorite dismutase CYD28_RS11160 ENOG4105DWK Membrane CYD28_RS11175 ENOG4105M08 Membrane CYD28_RS11185 ENOG4105D5S Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity) CYD28_RS11190 ENOG4105DWF phosphomethylpyrimidine kinase CYD28_RS11215 ENOG4105CHU acetyl-coa acetyltransferase CYD28_RS11220 ENOG4107F3J Amp-dependent synthetase and ligase CYD28_RS11275 ENOG41080HJ 6-phospho 3-hexuloisomerase CYD28_RS11280 ENOG4108VA3 3-hexulose-6-phosphate synthase CYD28_RS11290 ENOG4107YEI lmbE family CYD28_RS11295 ENOG4105DZA Converts GTP to 7,8-dihydroneopterin triphosphate (By similarity) CYD28_RS11335 ENOG4107YFT Nadph-dependent fmn reductase CYD28_RS11340 ENOG410667J hydrolase CYD28_RS11345 ENOG4108Z6B deaminase CYD28_RS11355 ENOG4105ZMH deoxynucleoside kinase CYD28_RS11360 ENOG4108VXP Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress (By similarity) CYD28_RS11400 ENOG4105CM2 brancheD-chain amino acid aminotransferase CYD28_RS11405 ENOG4105EXW epimerase dehydratase CYD28_RS11410 ENOG4105CGH 5'-nucleotidase CYD28_RS11430 ENOG4107EEK Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide (By similarity) CYD28_RS11440 ENOG4105CGV This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (By similarity) CYD28_RS11445 ENOG4105CEJ Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity) CYD28_RS11455 ENOG4108UKE Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit (By similarity) CYD28_RS11465 ENOG4105D27 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) CYD28_RS11470 ENOG4108IIJ DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity) CYD28_RS11475 ENOG4107Y49 methyltransferase CYD28_RS11480 ENOG4105KBC Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation (By similarity) CYD28_RS11485 ENOG4108VZM 50s ribosomal protein L10 CYD28_RS11495 ENOG4105C64 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity) CYD28_RS11500 ENOG4108UIK This protein binds directly to 23S ribosomal RNA (By similarity) CYD28_RS11505 ENOG4105E5V Participates in transcription elongation, termination and antitermination (By similarity) CYD28_RS11510 ENOG410683Z Preprotein translocase SecE subunit CYD28_RS11525 ENOG4105M0M Tetracycline resistance protein CYD28_RS11530 ENOG4105C2N RNA methyltransferase TrmH family group 3 CYD28_RS11535 ENOG4105KEB Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc) CYD28_RS11540 ENOG4105C8N cysteinyl-tRNA synthetase CYD28_RS11545 ENOG4105D7W serine acetyltransferase CYD28_RS11550 ENOG4105C20 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (By similarity) CYD28_RS11555 ENOG4105CTP PilT protein domain protein CYD28_RS11560 ENOG4105DNJ May play a role in the repair of endogenous alkylation damage (By similarity) CYD28_RS11565 ENOG4105C2Z ATP-dependent CLP protease ATP-binding subunit CYD28_RS11570 ENOG41066A3 ATP guanido phosphotransferase CYD28_RS11575 ENOG4108Z0C Uvrb UvrC protein CYD28_RS11580 ENOG4105KEX transcriptional regulator, ctsr CYD28_RS11585 ENOG4105D9N nucleoside CYD28_RS11590 ENOG4108UHX Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity) CYD28_RS11595 ENOG4105CD9 Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring (By similarity) CYD28_RS11600 ENOG4105C1I TRANSCRIPTIONAl REGULATOR GntR family CYD28_RS11690 ENOG4105CRK lysyL-tRNA synthetase CYD28_RS11695 ENOG4105K8U 2-Amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CYD28_RS11710 ENOG4105C6T cysteine synthase CYD28_RS11715 ENOG4105F4C Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress (By similarity) CYD28_RS11720 ENOG4105C3H Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity) CYD28_RS11725 ENOG4108UGV hypoxanthine phosphoribosyltransferase CYD28_RS11730 ENOG4105D3U Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (By similarity) CYD28_RS11735 ENOG41060GV RNA binding s1 domain protein CYD28_RS11745 ENOG41082I2 s4 domain protein CYD28_RS11750 ENOG4108IY2 MazG family CYD28_RS11760 ENOG4108JA2 transcriptioN-repair coupling factor CYD28_RS11765 ENOG4108ZPD The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (By similarity) CYD28_RS11770 ENOG4105KW6 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (By similarity) CYD28_RS11775 ENOG4105C5T Phosphoribosyl pyrophosphate synthase CYD28_RS11780 ENOG4105CAJ Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain (By similarity) CYD28_RS11785 ENOG4105K4W Could be involved in septation (By similarity) CYD28_RS11790 ENOG4105KME endoribonuclease L-psp CYD28_RS11795 ENOG4105DFT pur operon repressor CYD28_RS11800 ENOG4105CTR Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (By similarity) CYD28_RS11805 ENOG4105W42 Veg protein CYD28_RS11810 ENOG4105D1X Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (By similarity) CYD28_RS11815 ENOG4105HVR Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step (By similarity) CYD28_RS11820 ENOG4105F8V Hydrolase, tatD family CYD28_RS11825 ENOG4105CKH Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (By similarity) CYD28_RS11830 ENOG4105CU0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (By similarity) CYD28_RS11835 ENOG4105VC4 domain protein CYD28_RS11840 ENOG41060K3 Methyltransferase CYD28_RS11845 ENOG4105QD5 Involved in initiation control of chromosome replication (By similarity) CYD28_RS11850 ENOG4105MA4 psp1 domain protein CYD28_RS11855 ENOG4105FA2 dna polymerase iii CYD28_RS11860 ENOG4105X0R protein from nitrogen regulatory protein P-II CYD28_RS11865 ENOG4108ZMD Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity) CYD28_RS11870 ENOG4105CXN decarboxylase CYD28_RS11895 ENOG4105F3K May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (By similarity) CYD28_RS11900 ENOG410816I Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (By similarity) CYD28_RS11905 ENOG4105C6E dna polymerase iii CYD28_RS11920 ENOG4107414 GntR family transcriptional regulator CYD28_RS11925 ENOG4105CG3 alpha amylase, catalytic region CYD28_RS11930 ENOG4105C5Y PTS System CYD28_RS11940 ENOG4105BZ8 glutamate synthase CYD28_RS11945 ENOG4105CBC glutamate synthase CYD28_RS11980 ENOG41068JE domain protein CYD28_RS11985 ENOG4105C28 cystathionine CYD28_RS12005 ENOG4105C8J )-transporter CYD28_RS12030 ENOG410841Q phosphoesterase PA-phosphatase related protein CYD28_RS12040 ENOG4105GPN Uncharacterized conserved protein (DUF2294) CYD28_RS12045 ENOG4105EVH UPF0753 protein CYD28_RS12050 ENOG4108TWJ NADH dehydrogenase subunit 5 CYD28_RS12060 ENOG4105KA3 membrAne CYD28_RS12070 ENOG4105K5X acetyltransferase CYD28_RS12075 ENOG4105CZN Potassium uptake protein CYD28_RS12085 ENOG4108TFU terminase (Small subunit) CYD28_RS12145 ENOG4108U7W acetyltransferase CYD28_RS12210 ENOG4105C26 Dehydrogenase CYD28_RS12220 ENOG4105CCY NADH flavin oxidoreductase, NADH oxidase CYD28_RS12275 ENOG4105N14 lysine exporter protein LysE YggA CYD28_RS12280 ENOG4108TGR phosphatase CYD28_RS12290 ENOG4108JU3 Alkyl hydroperoxide reductase CYD28_RS12295 ENOG4105D3R alkyl hydroperoxide reductase CYD28_RS12305 ENOG4108DBC nitroreductase CYD28_RS12310 ENOG4107R6U sodium dicarboxylate symporter CYD28_RS12330 ENOG4108UPS Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis (By similarity) CYD28_RS12335 ENOG4105C2W permease CYD28_RS12340 ENOG4105CP4 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (By similarity) CYD28_RS12345 ENOG4105CM0 Catalyzes the synthesis of GMP from XMP (By similarity) CYD28_RS12420 ENOG4105VH8 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (By similarity) CYD28_RS12425 ENOG4108UUM single-stranded DNA-binding protein CYD28_RS12430 ENOG4108ZDX Binds together with S18 to 16S ribosomal RNA (By similarity) CYD28_RS12445 ENOG4105C3G gtp-binding protein CYD28_RS12450 ENOG4105VDK protein, conserved in bacteria CYD28_RS12455 ENOG4105D8X mechanosensitive ion channel CYD28_RS12460 ENOG4105FA0 parb-like partition protein CYD28_RS12465 ENOG4105C28 cystathionine CYD28_RS12470 ENOG4105C28 cystathionine CYD28_RS12480 ENOG4107QYE Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation (By similarity) CYD28_RS12495 ENOG4105C5H ABC transporter CYD28_RS12505 ENOG41090KQ Glyoxalase Bleomycin resistance protein (Dioxygenase CYD28_RS12525 ENOG4105C3F Signal peptidase i CYD28_RS12535 ENOG4105C19 ABC transporter CYD28_RS12580 ENOG4105D28 Specifically methylates the N7 position of a guanine in 16S rRNA (By similarity) CYD28_RS12585 ENOG4107RE5 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 (By similarity) CYD28_RS12590 ENOG4105C1H Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (By similarity) CYD28_RS12595 ENOG4105M7T RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme (By similarity) CYD28_RS12650 ENOG4105IIP Membrane CYD28_RS12655 ENOG4105W1N transcriptional regulator CYD28_RS12690 ENOG41081XE plasmid maintenance system antidote protein, xre family