SH_RS00005 SM00382 ATPases associated with a variety of cellular activities SH_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SH_RS00010 SM00480 DNA polymerase III beta subunit SH_RS00025 SM00387 Histidine kinase-like ATPases SH_RS00025 SM00433 TopoisomeraseII SH_RS00030 SM00434 DNA Topoisomerase IV SH_RS00065 SM00267 diguanylate cyclase SH_RS00080 SM00788 Adenylosuccinate synthetase SH_RS00100 SM00448 cheY-homologous receiver domain SH_RS00100 SM00862 Transcriptional regulatory protein, C terminal SH_RS00105 SM00091 PAS domain SH_RS00105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH_RS00105 SM00387 Histidine kinase-like ATPases SH_RS00105 SM00388 His Kinase A (phosphoacceptor) domain SH_RS00120 SM00849 Metallo-beta-lactamase superfamily SH_RS00150 SM00448 cheY-homologous receiver domain SH_RS00150 SM00862 Transcriptional regulatory protein, C terminal SH_RS00155 SM00387 Histidine kinase-like ATPases SH_RS00155 SM00388 His Kinase A (phosphoacceptor) domain SH_RS00255 SM00857 Resolvase, N terminal domain SH_RS00285 SM00487 DEAD-like helicases superfamily SH_RS00325 SM00642 Alpha-amylase domain SH_RS00330 SM00354 helix_turn _helix lactose operon repressor SH_RS00335 SM00342 helix_turn_helix, arabinose operon control protein SH_RS00360 SM00382 ATPases associated with a variety of cellular activities SH_RS00385 SM00382 ATPases associated with a variety of cellular activities SH_RS00420 SM00422 helix_turn_helix, mercury resistance SH_RS00435 SM00829 Enoylreductase SH_RS00450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS00455 SM00226 Low molecular weight phosphatase family SH_RS00465 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS00485 SM00226 Low molecular weight phosphatase family SH_RS00495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS00515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS00595 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS00600 SM00382 ATPases associated with a variety of cellular activities SH_RS00640 SM00382 ATPases associated with a variety of cellular activities SH_RS00645 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH_RS00675 SM00382 ATPases associated with a variety of cellular activities SH_RS00680 SM00382 ATPases associated with a variety of cellular activities SH_RS00705 SM00422 helix_turn_helix, mercury resistance SH_RS00715 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS00735 SM00382 ATPases associated with a variety of cellular activities SH_RS00790 SM00354 helix_turn _helix lactose operon repressor SH_RS00805 SM00382 ATPases associated with a variety of cellular activities SH_RS00900 SM00534 ATPase domain of DNA mismatch repair MUTS family SH_RS00980 SM00829 Enoylreductase SH_RS00985 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS01025 SM00861 Transketolase, pyrimidine binding domain SH_RS01105 SM00382 ATPases associated with a variety of cellular activities SH_RS01135 SM00530 Helix-turn-helix XRE-family like proteins SH_RS01145 SM00422 helix_turn_helix, mercury resistance SH_RS01195 SM00530 Helix-turn-helix XRE-family like proteins SH_RS01215 SM00506 Appr-1"-p processing enzyme SH_RS01235 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS01235 SM00876 Biotin and Thiamin Synthesis associated domain SH_RS01295 SM01130 SH_RS01295 SH_RS01325 SM00382 ATPases associated with a variety of cellular activities SH_RS01330 SM00382 ATPases associated with a variety of cellular activities SH_RS01380 SM00450 Rhodanese Homology Domain SH_RS01415 SM00382 ATPases associated with a variety of cellular activities SH_RS01430 SM00382 ATPases associated with a variety of cellular activities SH_RS01440 SM00530 Helix-turn-helix XRE-family like proteins SH_RS01470 SM00062 Bacterial periplasmic substrate-binding proteins SH_RS01475 SM00382 ATPases associated with a variety of cellular activities SH_RS01550 SM00957 SecA DEAD-like domain SH_RS01550 SM00958 SecA preprotein cross-linking domain SH_RS01565 SM00387 Histidine kinase-like ATPases SH_RS01665 SM00047 Lysozyme subfamily 2 SH_RS01720 SM00354 helix_turn _helix lactose operon repressor SH_RS01725 SM00849 Metallo-beta-lactamase superfamily SH_RS01730 SM00829 Enoylreductase SH_RS01740 SM00854 Bacterial capsule synthesis protein PGA_cap SH_RS01750 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS01865 SM00098 Alkaline phosphatase homologues SH_RS01870 SM00448 cheY-homologous receiver domain SH_RS01870 SM00862 Transcriptional regulatory protein, C terminal SH_RS01875 SM00387 Histidine kinase-like ATPases SH_RS01880 SM00382 ATPases associated with a variety of cellular activities SH_RS01995 SM00342 helix_turn_helix, arabinose operon control protein SH_RS02300 SM01266 SH_RS02300 SH_RS02405 SM00829 Enoylreductase SH_RS02435 SM00342 helix_turn_helix, arabinose operon control protein SH_RS02455 SM00854 Bacterial capsule synthesis protein PGA_cap SH_RS02520 SM00062 Bacterial periplasmic substrate-binding proteins SH_RS02545 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS02630 SM00954 Region found in RelA / SpoT proteins SH_RS02640 SM00422 helix_turn_helix, mercury resistance SH_RS02645 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH_RS02645 SM00895 SH_RS02645 SH_RS02670 SM00927 DNA mismatch repair enzyme MutH SH_RS02695 SM00822 SH_RS02695 SH_RS02755 SM00382 ATPases associated with a variety of cellular activities SH_RS02765 SM00387 Histidine kinase-like ATPases SH_RS02765 SM00388 His Kinase A (phosphoacceptor) domain SH_RS02770 SM00448 cheY-homologous receiver domain SH_RS02770 SM00862 Transcriptional regulatory protein, C terminal SH_RS02800 SM00829 Enoylreductase SH_RS02805 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS02805 SM00382 ATPases associated with a variety of cellular activities SH_RS02835 SM00448 cheY-homologous receiver domain SH_RS02835 SM00850 LytTr DNA-binding domain SH_RS02840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH_RS02840 SM00387 Histidine kinase-like ATPases SH_RS02900 SM00871 Bacterial transcription activator, effector binding domain SH_RS02950 SM00855 Phosphoglycerate mutase family SH_RS02960 SM00062 Bacterial periplasmic substrate-binding proteins SH_RS02960 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH_RS02970 SM00382 ATPases associated with a variety of cellular activities SH_RS02995 SM00867 YceI-like domain SH_RS03035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH_RS03060 SM00387 Histidine kinase-like ATPases SH_RS03065 SM00421 helix_turn_helix, Lux Regulon SH_RS03065 SM00448 cheY-homologous receiver domain SH_RS03080 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS03105 SM00342 helix_turn_helix, arabinose operon control protein SH_RS03135 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS03170 SM00829 Enoylreductase SH_RS03230 SM00850 LytTr DNA-binding domain SH_RS03235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH_RS03235 SM00387 Histidine kinase-like ATPases SH_RS03235 SM00388 His Kinase A (phosphoacceptor) domain SH_RS03240 SM00448 cheY-homologous receiver domain SH_RS03240 SM00862 Transcriptional regulatory protein, C terminal SH_RS03250 SM00382 ATPases associated with a variety of cellular activities SH_RS03260 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS03330 SM00530 Helix-turn-helix XRE-family like proteins SH_RS03390 SM00903 Flavin reductase like domain SH_RS03470 SM00420 helix_turn_helix, Deoxyribose operon repressor SH_RS03485 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH_RS03485 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH_RS03500 SM00047 Lysozyme subfamily 2 SH_RS03560 SM00342 helix_turn_helix, arabinose operon control protein SH_RS03620 SM00382 ATPases associated with a variety of cellular activities SH_RS03630 SM00852 Probable molybdopterin binding domain SH_RS03640 SM00852 Probable molybdopterin binding domain SH_RS03665 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS03680 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS03725 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH_RS03725 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH_RS03725 SM00493 SH_RS03725 SH_RS03740 SM01403 SH_RS03740 SH_RS03760 SM01382 SH_RS03760 SH_RS03760 SM01383 SH_RS03760 SH_RS03775 SM00322 K homology RNA-binding domain SH_RS03795 SM01374 SH_RS03795 SH_RS03800 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH_RS03855 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS03875 SM00662 RNA polymerases D SH_RS03890 SM00382 ATPases associated with a variety of cellular activities SH_RS03895 SM00382 ATPases associated with a variety of cellular activities SH_RS03925 SM00420 helix_turn_helix, Deoxyribose operon repressor SH_RS03925 SM01134 SH_RS03925 SH_RS03950 SM01133 SH_RS03950 SH_RS03980 SM00829 Enoylreductase SH_RS04165 SM00382 ATPases associated with a variety of cellular activities SH_RS04195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS04235 SM01133 SH_RS04235 SH_RS04240 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH_RS04320 SM00357 Cold shock protein domain SH_RS04320 SM00382 ATPases associated with a variety of cellular activities SH_RS04320 SM00959 Rho termination factor, N-terminal domain SH_RS04335 SM00937 SH_RS04335 SH_RS04350 SM00226 Low molecular weight phosphatase family SH_RS04410 SM00382 ATPases associated with a variety of cellular activities SH_RS04480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS04485 SM00155 Phospholipase D. Active site motifs. SH_RS04520 SM00487 DEAD-like helicases superfamily SH_RS04520 SM00490 helicase superfamily c-terminal domain SH_RS04545 SM01005 Alanine racemase, C-terminal domain SH_RS04560 SM00331 Sigma factor PP2C-like phosphatases SH_RS04560 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SH_RS04580 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS04580 SM00732 Likely ribonuclease with RNase H fold. SH_RS04585 SM00731 SprT homologues. SH_RS04635 SM01329 SH_RS04635 SH_RS04640 SM00917 LeuA allosteric (dimerisation) domain SH_RS04685 SM00382 ATPases associated with a variety of cellular activities SH_RS04690 SM00881 CoA binding domain SH_RS04710 SM00354 helix_turn _helix lactose operon repressor SH_RS04715 SM00640 Glycosyl hydrolases family 32 SH_RS04725 SM00448 cheY-homologous receiver domain SH_RS04725 SM00850 LytTr DNA-binding domain SH_RS04735 SM00794 Staphylococcal AgrD protein SH_RS04740 SM00793 Accessory gene regulator B SH_RS04765 SM00883 Chaperonin 10 Kd subunit SH_RS04840 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH_RS04845 SM00382 ATPases associated with a variety of cellular activities SH_RS04855 SM00382 ATPases associated with a variety of cellular activities SH_RS04900 SM01131 SH_RS04900 SH_RS04910 SM00710 Parallel beta-helix repeats SH_RS04940 SM00998 Adenylosuccinate lyase C-terminus SH_RS04960 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH_RS04960 SM00292 breast cancer carboxy-terminal domain SH_RS04960 SM00532 Ligase N family SH_RS04990 SM00845 GatB domain SH_RS04995 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH_RS05015 SM00479 SH_RS05015 SH_RS05065 SM00387 Histidine kinase-like ATPases SH_RS05070 SM00421 helix_turn_helix, Lux Regulon SH_RS05070 SM00448 cheY-homologous receiver domain SH_RS05090 SM00226 Low molecular weight phosphatase family SH_RS05160 SM00478 endonuclease III SH_RS05170 SM00382 ATPases associated with a variety of cellular activities SH_RS05365 SM00062 Bacterial periplasmic substrate-binding proteins SH_RS05365 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH_RS05370 SM00382 ATPases associated with a variety of cellular activities SH_RS05375 SM00567 E-Z type HEAT repeats SH_RS05410 SM00421 helix_turn_helix, Lux Regulon SH_RS05410 SM00448 cheY-homologous receiver domain SH_RS05415 SM00530 Helix-turn-helix XRE-family like proteins SH_RS05440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS05465 SM00382 ATPases associated with a variety of cellular activities SH_RS05550 SM01234 SH_RS05550 SH_RS05625 SM00047 Lysozyme subfamily 2 SH_RS05680 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS05695 SM00450 Rhodanese Homology Domain SH_RS05720 SM00363 S4 RNA-binding domain SH_RS05750 SM00849 Metallo-beta-lactamase superfamily SH_RS05780 SM00843 SH_RS05780 SH_RS05800 SM00830 Chorismate mutase type II SH_RS05805 SM00354 helix_turn _helix lactose operon repressor SH_RS05835 SM00363 S4 RNA-binding domain SH_RS05840 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS05855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH_RS05860 SM00563 Phosphate acyltransferases SH_RS05900 SM00363 S4 RNA-binding domain SH_RS05900 SM01390 SH_RS05900 SH_RS05920 SM00981 SH_RS05920 SH_RS05950 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH_RS05950 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH_RS05960 SM00849 Metallo-beta-lactamase superfamily SH_RS05970 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS05980 SM00481 DNA polymerase alpha chain like domain SH_RS05985 SM00919 Malic enzyme, NAD binding domain SH_RS05985 SM01274 SH_RS05985 SH_RS06025 SM01329 SH_RS06025 SH_RS06030 SM00448 cheY-homologous receiver domain SH_RS06030 SM00862 Transcriptional regulatory protein, C terminal SH_RS06035 SM00091 PAS domain SH_RS06035 SM00387 Histidine kinase-like ATPases SH_RS06035 SM00388 His Kinase A (phosphoacceptor) domain SH_RS06040 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH_RS06040 SM00474 3'-5' exonuclease SH_RS06040 SM00475 5'-3' exonuclease SH_RS06040 SM00482 DNA polymerase A domain SH_RS06045 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH_RS06045 SM01232 SH_RS06045 SH_RS06055 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH_RS06075 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS06115 SM00382 ATPases associated with a variety of cellular activities SH_RS06115 SM00994 ClpX C4-type zinc finger SH_RS06115 SM01086 C-terminal, D2-small domain, of ClpB protein SH_RS06155 SM01004 Delta-aminolevulinic acid dehydratase SH_RS06240 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH_RS06245 SM00382 ATPases associated with a variety of cellular activities SH_RS06260 SM01323 SH_RS06260 SH_RS06280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS06280 SM00954 Region found in RelA / SpoT proteins SH_RS06290 SM00287 Bacterial SH3 domain homologues SH_RS06290 SM00646 SH_RS06290 SH_RS06310 SM00382 ATPases associated with a variety of cellular activities SH_RS06335 SM00028 Tetratricopeptide repeats SH_RS06340 SM00382 ATPases associated with a variety of cellular activities SH_RS06345 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS06355 SM00732 Likely ribonuclease with RNase H fold. SH_RS06390 SM00796 Allophanate hydrolase subunit 1 SH_RS06395 SM00797 Allophanate hydrolase subunit 2 SH_RS06405 SM00878 Biotin carboxylase C-terminal domain SH_RS06440 SM01103 SH_RS06440 SH_RS06450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS06465 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH_RS06475 SM00849 Metallo-beta-lactamase superfamily SH_RS06495 SM00838 Elongation factor G C-terminus SH_RS06500 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS06520 SM00271 DnaJ molecular chaperone homology domain SH_RS06535 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS06595 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS06605 SM00400 zinc finger SH_RS06605 SM00493 SH_RS06605 SH_RS06625 SM00487 DEAD-like helicases superfamily SH_RS06625 SM00490 helicase superfamily c-terminal domain SH_RS06630 SM00518 AP endonuclease family 2 SH_RS06635 SM00382 ATPases associated with a variety of cellular activities SH_RS06690 SM00849 Metallo-beta-lactamase superfamily SH_RS06750 SM00450 Rhodanese Homology Domain SH_RS06775 SM00841 Elongation factor P, C-terminal SH_RS06775 SM01185 SH_RS06775 SH_RS06785 SM00878 Biotin carboxylase C-terminal domain SH_RS06835 SM00861 Transketolase, pyrimidine binding domain SH_RS06865 SM01350 SH_RS06865 SH_RS06870 SM00354 helix_turn _helix lactose operon repressor SH_RS06875 SM00642 Alpha-amylase domain SH_RS06880 SM00342 helix_turn_helix, arabinose operon control protein SH_RS06880 SM00871 Bacterial transcription activator, effector binding domain SH_RS06900 SM00822 SH_RS06900 SH_RS06945 SM00363 S4 RNA-binding domain SH_RS06950 SM00448 cheY-homologous receiver domain SH_RS06950 SM00862 Transcriptional regulatory protein, C terminal SH_RS06955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH_RS06955 SM00387 Histidine kinase-like ATPases SH_RS06955 SM00388 His Kinase A (phosphoacceptor) domain SH_RS06975 SM00487 DEAD-like helicases superfamily SH_RS06975 SM00490 helicase superfamily c-terminal domain SH_RS06980 SM00257 Lysin motif SH_RS06990 SM00870 SH_RS06990 SH_RS07000 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS07015 SM00411 bacterial (prokaryotic) histone like domain SH_RS07040 SM00562 SH_RS07040 SH_RS07060 SM00028 Tetratricopeptide repeats SH_RS07065 SM00914 SH_RS07065 SH_RS07100 SM00479 SH_RS07100 SH_RS07100 SM00491 SH_RS07100 SH_RS07115 SM00478 endonuclease III SH_RS07115 SM00525 SH_RS07115 SH_RS07150 SM00981 SH_RS07150 SH_RS07165 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH_RS07165 SM00475 5'-3' exonuclease SH_RS07190 SM00932 Scaffold protein Nfu/NifU N terminal SH_RS07195 SM00567 E-Z type HEAT repeats SH_RS07195 SM00932 Scaffold protein Nfu/NifU N terminal SH_RS07240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH_RS07240 SM00245 tail specific protease SH_RS07255 SM00014 Acid phosphatase homologues SH_RS07260 SM00448 cheY-homologous receiver domain SH_RS07260 SM00862 Transcriptional regulatory protein, C terminal SH_RS07265 SM00387 Histidine kinase-like ATPases SH_RS07265 SM00388 His Kinase A (phosphoacceptor) domain SH_RS07270 SM00861 Transketolase, pyrimidine binding domain SH_RS07300 SM00382 ATPases associated with a variety of cellular activities SH_RS07305 SM00327 von Willebrand factor (vWF) type A domain SH_RS07340 SM00357 Cold shock protein domain SH_RS07355 SM01005 Alanine racemase, C-terminal domain SH_RS07375 SM01130 SH_RS07375 SH_RS07380 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH_RS07390 SM00382 ATPases associated with a variety of cellular activities SH_RS07415 SM00382 ATPases associated with a variety of cellular activities SH_RS07540 SM01061 CAT RNA binding domain SH_RS07550 SM00434 DNA Topoisomerase IV SH_RS07555 SM00387 Histidine kinase-like ATPases SH_RS07555 SM00433 TopoisomeraseII SH_RS07560 SM01207 SH_RS07560 SH_RS07610 SM00861 Transketolase, pyrimidine binding domain SH_RS07635 SM01240 SH_RS07635 SH_RS07650 SM01060 SH_RS07650 SH_RS07700 SM00318 Staphylococcal nuclease homologues SH_RS07715 SM00421 helix_turn_helix, Lux Regulon SH_RS07715 SM00448 cheY-homologous receiver domain SH_RS07730 SM00382 ATPases associated with a variety of cellular activities SH_RS07735 SM00155 Phospholipase D. Active site motifs. SH_RS07785 SM01230 SH_RS07785 SH_RS07790 SM00422 helix_turn_helix, mercury resistance SH_RS07865 SM00853 MutL C terminal dimerisation domain SH_RS07865 SM01340 SH_RS07865 SH_RS07870 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH_RS07870 SM00534 ATPase domain of DNA mismatch repair MUTS family SH_RS07885 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS07920 SM00322 K homology RNA-binding domain SH_RS07920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS07925 SM00382 ATPases associated with a variety of cellular activities SH_RS07930 SM00852 Probable molybdopterin binding domain SH_RS07965 SM00866 SH_RS07965 SH_RS07970 SM00382 ATPases associated with a variety of cellular activities SH_RS07970 SM00843 SH_RS07970 SH_RS07975 SM00849 Metallo-beta-lactamase superfamily SH_RS07980 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS07980 SM00322 K homology RNA-binding domain SH_RS07985 SM01387 SH_RS07985 SH_RS07990 SM00904 Riboflavin kinase SH_RS08025 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS08025 SM00322 K homology RNA-binding domain SH_RS08035 SM00479 SH_RS08035 SH_RS08035 SM00481 DNA polymerase alpha chain like domain SH_RS08085 SM00382 ATPases associated with a variety of cellular activities SH_RS08085 SM01086 C-terminal, D2-small domain, of ClpB protein SH_RS08105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH_RS08105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH_RS08105 SM00493 SH_RS08105 SH_RS08120 SM00881 CoA binding domain SH_RS08170 SM00382 ATPases associated with a variety of cellular activities SH_RS08170 SM00962 SRP54-type protein, GTPase domain SH_RS08170 SM00963 SRP54-type protein, helical bundle domain SH_RS08180 SM00382 ATPases associated with a variety of cellular activities SH_RS08180 SM00962 SRP54-type protein, GTPase domain SH_RS08180 SM00963 SRP54-type protein, helical bundle domain SH_RS08185 SM00968 SMC proteins Flexible Hinge Domain SH_RS08190 SM00358 Double-stranded RNA binding motif SH_RS08190 SM00535 Ribonuclease III family SH_RS08200 SM00822 SH_RS08200 SH_RS08205 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH_RS08220 SM00487 DEAD-like helicases superfamily SH_RS08220 SM00490 helicase superfamily c-terminal domain SH_RS08225 SM00318 Staphylococcal nuclease homologues SH_RS08225 SM00894 Excalibur calcium-binding domain SH_RS08230 SM01120 SH_RS08230 SH_RS08230 SM01121 SH_RS08230 SH_RS08245 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SH_RS08260 SM00220 Serine/Threonine protein kinases, catalytic domain SH_RS08260 SM00740 SH_RS08260 SH_RS08265 SM00331 Sigma factor PP2C-like phosphatases SH_RS08265 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SH_RS08295 SM00487 DEAD-like helicases superfamily SH_RS08295 SM00490 helicase superfamily c-terminal domain SH_RS08305 SM01409 SH_RS08305 SH_RS08310 SM00072 Guanylate kinase homologues. SH_RS08335 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH_RS08340 SM00851 MGS-like domain SH_RS08340 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH_RS08340 SM01209 SH_RS08340 SH_RS08345 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH_RS08370 SM00363 S4 RNA-binding domain SH_RS08405 SM00363 S4 RNA-binding domain SH_RS08430 SM00864 Tubulin/FtsZ family, GTPase domain SH_RS08430 SM00865 Tubulin/FtsZ family, C-terminal domain SH_RS08435 SM00842 Cell division protein FtsA SH_RS08455 SM00740 SH_RS08455 SH_RS08530 SM00646 SH_RS08530 SH_RS08605 SM00857 Resolvase, N terminal domain SH_RS08680 SM00507 HNH nucleases SH_RS08690 SM00487 DEAD-like helicases superfamily SH_RS08695 SM00990 SH_RS08695 SH_RS08795 SM00530 Helix-turn-helix XRE-family like proteins SH_RS08800 SM00530 Helix-turn-helix XRE-family like proteins SH_RS08850 SM00465 GIY-YIG type nucleases (URI domain) SH_RS08860 SM00463 Small MutS-related domain SH_RS08860 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH_RS08860 SM00534 ATPase domain of DNA mismatch repair MUTS family SH_RS08865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH_RS08865 SM00481 DNA polymerase alpha chain like domain SH_RS08865 SM00483 DNA polymerase X family SH_RS08885 SM00873 B3/4 domain SH_RS08885 SM00874 tRNA synthetase B5 domain SH_RS08885 SM00896 Ferredoxin-fold anticodon binding domain SH_RS08895 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH_RS08965 SM00878 Biotin carboxylase C-terminal domain SH_RS08990 SM00838 Elongation factor G C-terminus SH_RS09040 SM00382 ATPases associated with a variety of cellular activities SH_RS09045 SM00530 Helix-turn-helix XRE-family like proteins SH_RS09065 SM00861 Transketolase, pyrimidine binding domain SH_RS09090 SM00849 Metallo-beta-lactamase superfamily SH_RS09160 SM00382 ATPases associated with a variety of cellular activities SH_RS09170 SM01209 SH_RS09170 SH_RS09170 SM01210 SH_RS09170 SH_RS09175 SM00798 AICARFT/IMPCHase bienzyme SH_RS09175 SM00851 MGS-like domain SH_RS09200 SM01211 SH_RS09200 SH_RS09220 SM01001 AIR carboxylase SH_RS09300 SM00047 Lysozyme subfamily 2 SH_RS09300 SM00644 SH_RS09300 SH_RS09310 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS09365 SM00914 SH_RS09365 SH_RS09420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH_RS09480 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS09480 SM00924 MgtE intracellular N domain SH_RS09495 SM00954 Region found in RelA / SpoT proteins SH_RS09505 SM01118 SH_RS09505 SH_RS09565 SM00382 ATPases associated with a variety of cellular activities SH_RS09570 SM00382 ATPases associated with a variety of cellular activities SH_RS09590 SM00825 Beta-ketoacyl synthase SH_RS09605 SM00382 ATPases associated with a variety of cellular activities SH_RS09605 SM01086 C-terminal, D2-small domain, of ClpB protein SH_RS09685 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH_RS09700 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS09710 SM01298 SH_RS09710 SH_RS09855 SM00729 Elongator protein 3, MiaB family, Radical SAM SH_RS09910 SM00382 ATPases associated with a variety of cellular activities SH_RS09940 SM00382 ATPases associated with a variety of cellular activities SH_RS09940 SM00930 SH_RS09940 SH_RS09950 SM00493 SH_RS09950 SH_RS09995 SM00855 Phosphoglycerate mutase family SH_RS10080 SM00871 Bacterial transcription activator, effector binding domain SH_RS10140 SM00885 D5 N terminal like SH_RS10145 SM00942 Primase C terminal 1 (PriCT-1) SH_RS10175 SM00530 Helix-turn-helix XRE-family like proteins SH_RS10180 SM00530 Helix-turn-helix XRE-family like proteins SH_RS10200 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS10200 SM00357 Cold shock protein domain SH_RS10200 SM00955 SH_RS10200 SH_RS10220 SM01192 SH_RS10220 SH_RS10220 SM01193 SH_RS10220 SH_RS10240 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH_RS10300 SM00028 Tetratricopeptide repeats SH_RS10325 SM00487 DEAD-like helicases superfamily SH_RS10325 SM00490 helicase superfamily c-terminal domain SH_RS10345 SM00257 Lysin motif SH_RS10350 SM00937 SH_RS10350 SH_RS10355 SM00957 SecA DEAD-like domain SH_RS10355 SM00958 SecA preprotein cross-linking domain SH_RS10370 SM00487 DEAD-like helicases superfamily SH_RS10370 SM00490 helicase superfamily c-terminal domain SH_RS10390 SM00267 diguanylate cyclase SH_RS10450 SM00382 ATPases associated with a variety of cellular activities SH_RS10495 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH_RS10520 SM00382 ATPases associated with a variety of cellular activities SH_RS10525 SM00341 Helicase and RNase D C-terminal SH_RS10525 SM00487 DEAD-like helicases superfamily SH_RS10525 SM00490 helicase superfamily c-terminal domain SH_RS10525 SM00956 SH_RS10525 SH_RS10530 SM00382 ATPases associated with a variety of cellular activities SH_RS10555 SM00797 Allophanate hydrolase subunit 2 SH_RS10560 SM00796 Allophanate hydrolase subunit 1 SH_RS10620 SM01091 Transporter associated domain SH_RS10635 SM00420 helix_turn_helix, Deoxyribose operon repressor SH_RS10635 SM01134 SH_RS10635 SH_RS10685 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH_RS10690 SM00347 helix_turn_helix multiple antibiotic resistance protein SH_RS10695 SM00382 ATPases associated with a variety of cellular activities SH_RS10700 SM00382 ATPases associated with a variety of cellular activities SH_RS10790 SM00342 helix_turn_helix, arabinose operon control protein SH_RS10800 SM00257 Lysin motif SH_RS10820 SM00382 ATPases associated with a variety of cellular activities SH_RS10825 SM00387 Histidine kinase-like ATPases SH_RS10830 SM00448 cheY-homologous receiver domain SH_RS10830 SM00862 Transcriptional regulatory protein, C terminal SH_RS10865 SM01120 SH_RS10865 SH_RS10885 SM00382 ATPases associated with a variety of cellular activities SH_RS10910 SM00382 ATPases associated with a variety of cellular activities SH_RS10940 SM00382 ATPases associated with a variety of cellular activities SH_RS10955 SM00529 Helix-turn-helix diphteria tox regulatory element SH_RS10955 SM00899 SH_RS10955 SH_RS11095 SM00422 helix_turn_helix, mercury resistance SH_RS11100 SM00478 endonuclease III SH_RS11105 SM00836 DALR anticodon binding domain SH_RS11105 SM01016 Arginyl tRNA synthetase N terminal dom SH_RS11135 SM00382 ATPases associated with a variety of cellular activities SH_RS11140 SM00091 PAS domain SH_RS11140 SM00382 ATPases associated with a variety of cellular activities SH_RS11160 SM00857 Resolvase, N terminal domain SH_RS11165 SM00857 Resolvase, N terminal domain SH_RS11180 SM00530 Helix-turn-helix XRE-family like proteins SH_RS11215 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH_RS11230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH_RS11255 SM00287 Bacterial SH3 domain homologues SH_RS11255 SM00644 SH_RS11255 SH_RS11275 SM00047 Lysozyme subfamily 2 SH_RS11300 SM00710 Parallel beta-helix repeats SH_RS11355 SM00959 Rho termination factor, N-terminal domain SH_RS11495 SM00530 Helix-turn-helix XRE-family like proteins SH_RS11555 SM00530 Helix-turn-helix XRE-family like proteins SH_RS11560 SM00857 Resolvase, N terminal domain SH_RS11570 SM00357 Cold shock protein domain SH_RS11635 SM00986 Uracil DNA glycosylase superfamily SH_RS11635 SM00987 UreE urease accessory protein, C-terminal domain SH_RS11680 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH_RS11845 SM00838 Elongation factor G C-terminus SH_RS11845 SM00889 Elongation factor G, domain IV SH_RS11865 SM00663 RNA polymerase I subunit A N-terminus SH_RS11900 SM00649 Ribosomal protein L11/L12 SH_RS11905 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH_RS11905 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH_RS11930 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH_RS11935 SM00535 Ribonuclease III family SH_RS11940 SM00840 SH_RS11940 SH_RS11955 SM00670 Large family of predicted nucleotide-binding domains SH_RS11960 SM00382 ATPases associated with a variety of cellular activities SH_RS11965 SM00382 ATPases associated with a variety of cellular activities SH_RS11965 SM01086 C-terminal, D2-small domain, of ClpB protein SH_RS12000 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH_RS12085 SM00905 Dihydroneopterin aldolase SH_RS12105 SM00382 ATPases associated with a variety of cellular activities SH_RS12115 SM00977 TilS substrate C-terminal domain SH_RS12120 SM00316 Ribosomal protein S1-like RNA-binding domain SH_RS12130 SM00363 S4 RNA-binding domain SH_RS12145 SM00487 DEAD-like helicases superfamily SH_RS12145 SM00490 helicase superfamily c-terminal domain SH_RS12145 SM00982 SH_RS12145 SH_RS12145 SM01058 CarD-like/TRCF domain SH_RS12160 SM01400 SH_RS12160 SH_RS12195 SM00650 Ribosomal RNA adenine dimethylases SH_RS12200 SM00493 SH_RS12200 SH_RS12220 SM00465 GIY-YIG type nucleases (URI domain) SH_RS12280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH_RS12280 SM00493 SH_RS12280 SH_RS12290 SM00382 ATPases associated with a variety of cellular activities SH_RS12300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH_RS12300 SM00866 SH_RS12300 SH_RS12305 SM00642 Alpha-amylase domain SH_RS12360 SM00257 Lysin motif SH_RS12410 SM00014 Acid phosphatase homologues SH_RS12485 SM00513 Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation SH_RS12515 SM00116 Domain in cystathionine beta-synthase and other proteins. SH_RS12515 SM01240 SH_RS12515 SH_RS12575 SM00855 Phosphoglycerate mutase family SH_RS12590 SM01321 SH_RS12590 SH_RS12640 SM00857 Resolvase, N terminal domain SH_RS12660 SM00382 ATPases associated with a variety of cellular activities SH_RS12745 SM00470 ParB-like nuclease domain SH_RS12780 SM00382 ATPases associated with a variety of cellular activities SH_RS12830 SM00342 helix_turn_helix, arabinose operon control protein SH_RS12845 SM00382 ATPases associated with a variety of cellular activities SH_RS12885 SM00382 ATPases associated with a variety of cellular activities SH_RS12905 SM00530 Helix-turn-helix XRE-family like proteins SH_RS12925 SM00470 ParB-like nuclease domain SH_RS12935 SM01228 SH_RS12935 SH_RS12960 SM00760 Bacterial dnaA protein helix-turn-helix domain SH_RS13045 SM00507 HNH nucleases