locus-tag class description SH_RS00005 PF11638 DnaA N-terminal domain SH_RS00005 PF00308 Bacterial dnaA protein SH_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SH_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SH_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SH_RS00010 PF02767 DNA polymerase III beta subunit, central domain SH_RS00020 PF02463 RecF/RecN/SMC N terminal domain SH_RS00025 PF01751 Toprim domain SH_RS00025 PF00204 DNA gyrase B SH_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus SH_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller SH_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A SH_RS00035 PF01256 Carbohydrate kinase SH_RS00040 PF02403 Seryl-tRNA synthetase N-terminal domain SH_RS00040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH_RS00045 PF03591 AzlC protein SH_RS00055 PF00561 alpha/beta hydrolase fold SH_RS00065 PF02272 DHHA1 domain SH_RS00065 PF01368 DHH family SH_RS00070 PF03948 Ribosomal protein L9, C-terminal domain SH_RS00070 PF01281 Ribosomal protein L9, N-terminal domain SH_RS00075 PF03796 DnaB-like helicase C terminal domain SH_RS00075 PF00772 DnaB-like helicase N terminal domain SH_RS00080 PF00709 Adenylosuccinate synthetase SH_RS00100 PF00486 Transcriptional regulatory protein, C terminal SH_RS00100 PF00072 Response regulator receiver domain SH_RS00105 PF00989 PAS fold SH_RS00105 PF00512 His Kinase A (phospho-acceptor) domain SH_RS00105 PF00672 HAMP domain SH_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS00110 PF07435 YycH protein SH_RS00120 PF00753 Metallo-beta-lactamase superfamily SH_RS00125 PF02590 Predicted SPOUT methyltransferase SH_RS00135 PF13610 DDE domain SH_RS00145 PF13683 Integrase core domain SH_RS00145 PF01610 Transposase SH_RS00150 PF00072 Response regulator receiver domain SH_RS00150 PF00486 Transcriptional regulatory protein, C terminal SH_RS00155 PF13493 Domain of unknown function (DUF4118) SH_RS00155 PF02702 Osmosensitive K+ channel His kinase sensor domain SH_RS00155 PF00512 His Kinase A (phospho-acceptor) domain SH_RS00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS00165 PF03814 Potassium-transporting ATPase A subunit SH_RS00175 PF02669 K+-transporting ATPase, c chain SH_RS00185 PF01925 Sulfite exporter TauE/SafE SH_RS00190 PF04650 YSIRK type signal peptide SH_RS00190 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SH_RS00190 PF17210 SdrD B-like domain SH_RS00190 PF00746 LPXTG cell wall anchor motif SH_RS00190 PF17961 Bacterial Ig domain SH_RS00190 PF04650 YSIRK type signal peptide SH_RS00190 PF17961 Bacterial Ig domain SH_RS00190 PF00746 LPXTG cell wall anchor motif SH_RS00190 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SH_RS00190 PF17210 SdrD B-like domain SH_RS00195 PF00534 Glycosyl transferases group 1 SH_RS00205 PF03060 Nitronate monooxygenase SH_RS00210 PF03466 LysR substrate binding domain SH_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS00215 PF06779 Uncharacterised MFS-type transporter YbfB SH_RS00255 PF02796 Helix-turn-helix domain of resolvase SH_RS00255 PF00239 Resolvase, N terminal domain SH_RS00285 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH_RS00285 PF18766 SWI2/SNF2 ATPase SH_RS00285 PF11867 Domain of unknown function (DUF3387) SH_RS00290 PF01420 Type I restriction modification DNA specificity domain SH_RS00295 PF02384 N-6 DNA Methylase SH_RS00310 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH_RS00315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS00315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS00320 PF00083 Sugar (and other) transporter SH_RS00325 PF16657 Maltogenic Amylase, C-terminal domain SH_RS00325 PF00128 Alpha amylase, catalytic domain SH_RS00330 PF00356 Bacterial regulatory proteins, lacI family SH_RS00335 PF02311 AraC-like ligand binding domain SH_RS00335 PF12833 Helix-turn-helix domain SH_RS00345 PF13610 DDE domain SH_RS00355 PF01610 Transposase SH_RS00355 PF13683 Integrase core domain SH_RS00360 PF00005 ABC transporter SH_RS00390 PF13610 DDE domain SH_RS00400 PF03009 Glycerophosphoryl diester phosphodiesterase family SH_RS00405 PF01575 MaoC like domain SH_RS00410 PF05223 NTF2-like N-terminal transpeptidase domain SH_RS00410 PF00905 Penicillin binding protein transpeptidase domain SH_RS00410 PF03717 Penicillin-binding Protein dimerisation domain SH_RS00415 PF13610 DDE domain SH_RS00420 PF13411 MerR HTH family regulatory protein SH_RS00430 PF13460 NAD(P)H-binding SH_RS00435 PF16884 N-terminal domain of oxidoreductase SH_RS00435 PF00107 Zinc-binding dehydrogenase SH_RS00450 PF01022 Bacterial regulatory protein, arsR family SH_RS00455 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH_RS00460 PF02040 Arsenical pump membrane protein SH_RS00465 PF01022 Bacterial regulatory protein, arsR family SH_RS00475 PF07731 Multicopper oxidase SH_RS00475 PF07732 Multicopper oxidase SH_RS00480 PF07563 Protein of unknown function (DUF1541) SH_RS00485 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH_RS00490 PF02040 Arsenical pump membrane protein SH_RS00495 PF01022 Bacterial regulatory protein, arsR family SH_RS00500 PF02374 Anion-transporting ATPase SH_RS00505 PF06953 Arsenical resistance operon trans-acting repressor ArsD SH_RS00515 PF01022 Bacterial regulatory protein, arsR family SH_RS00530 PF18766 SWI2/SNF2 ATPase SH_RS00530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH_RS00530 PF12008 Type I restriction and modification enzyme - subunit R C terminal SH_RS00535 PF13610 DDE domain SH_RS00540 PF04507 Csa1 family SH_RS00545 PF00924 Mechanosensitive ion channel SH_RS00560 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH_RS00560 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH_RS00565 PF01297 Zinc-uptake complex component A periplasmic SH_RS00575 PF02525 Flavodoxin-like fold SH_RS00585 PF07687 Peptidase dimerisation domain SH_RS00585 PF01546 Peptidase family M20/M25/M40 SH_RS00595 PF03129 Anticodon binding domain SH_RS00595 PF02824 TGS domain SH_RS00595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH_RS00595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS00600 PF00005 ABC transporter SH_RS00620 PF01757 Acyltransferase family SH_RS00625 PF00535 Glycosyl transferase family 2 SH_RS00625 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 SH_RS00630 PF01297 Zinc-uptake complex component A periplasmic SH_RS00635 PF00950 ABC 3 transport family SH_RS00640 PF00005 ABC transporter SH_RS00645 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH_RS00645 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH_RS00650 PF05525 Branched-chain amino acid transport protein SH_RS00660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH_RS00665 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS00670 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS00675 PF00005 ABC transporter SH_RS00675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH_RS00680 PF00005 ABC transporter SH_RS00700 PF07690 Major Facilitator Superfamily SH_RS00705 PF13411 MerR HTH family regulatory protein SH_RS00715 PF00571 CBS domain SH_RS00715 PF03471 Transporter associated domain SH_RS00715 PF01595 Cyclin M transmembrane N-terminal domain SH_RS00725 PF01872 RibD C-terminal domain SH_RS00735 PF00005 ABC transporter SH_RS00740 PF00324 Amino acid permease SH_RS00745 PF00881 Nitroreductase family SH_RS00765 PF04650 YSIRK type signal peptide SH_RS00790 PF00356 Bacterial regulatory proteins, lacI family SH_RS00795 PF00294 pfkB family carbohydrate kinase SH_RS00800 PF05025 RbsD / FucU transport protein family SH_RS00805 PF00005 ABC transporter SH_RS00810 PF02653 Branched-chain amino acid transport system / permease component SH_RS00815 PF13407 Periplasmic binding protein domain SH_RS00820 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH_RS00820 PF02558 Ketopantoate reductase PanE/ApbA SH_RS00825 PF02548 Ketopantoate hydroxymethyltransferase SH_RS00830 PF02569 Pantoate-beta-alanine ligase SH_RS00835 PF02261 Aspartate decarboxylase SH_RS00845 PF02557 D-alanyl-D-alanine carboxypeptidase SH_RS00850 PF01418 Helix-turn-helix domain, rpiR family SH_RS00850 PF01380 SIS domain SH_RS00855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH_RS00860 PF02378 Phosphotransferase system, EIIC SH_RS00865 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH_RS00880 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH_RS00890 PF05656 Protein of unknown function (DUF805) SH_RS00900 PF00488 MutS domain V SH_RS00900 PF05192 MutS domain III SH_RS00900 PF05188 MutS domain II SH_RS00900 PF01624 MutS domain I SH_RS00900 PF05190 MutS family domain IV SH_RS00905 PF11208 Protein of unknown function (DUF2992) SH_RS00910 PF02040 Arsenical pump membrane protein SH_RS00915 PF03606 C4-dicarboxylate anaerobic carrier SH_RS00930 PF12867 DinB superfamily SH_RS00950 PF07690 Major Facilitator Superfamily SH_RS00970 PF00890 FAD binding domain SH_RS00975 PF00171 Aldehyde dehydrogenase family SH_RS00980 PF00107 Zinc-binding dehydrogenase SH_RS00980 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS00985 PF01047 MarR family SH_RS00990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS00990 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS01005 PF00155 Aminotransferase class I and II SH_RS01015 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS01015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS01020 PF00676 Dehydrogenase E1 component SH_RS01025 PF02780 Transketolase, C-terminal domain SH_RS01025 PF02779 Transketolase, pyrimidine binding domain SH_RS01030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH_RS01030 PF00364 Biotin-requiring enzyme SH_RS01030 PF02817 e3 binding domain SH_RS01035 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS01035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS01040 PF03551 Transcriptional regulator PadR-like family SH_RS01060 PF08125 Mannitol dehydrogenase C-terminal domain SH_RS01060 PF01232 Mannitol dehydrogenase Rossmann domain SH_RS01065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH_RS01070 PF00874 PRD domain SH_RS01070 PF08279 HTH domain SH_RS01070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH_RS01070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH_RS01070 PF05043 Mga helix-turn-helix domain SH_RS01075 PF02378 Phosphotransferase system, EIIC SH_RS01075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH_RS01085 PF00892 EamA-like transporter family SH_RS01095 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SH_RS01145 PF13411 MerR HTH family regulatory protein SH_RS01150 PF02525 Flavodoxin-like fold SH_RS01170 PF05154 TM2 domain SH_RS01180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH_RS01180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH_RS01185 PF00696 Amino acid kinase family SH_RS01195 PF01381 Helix-turn-helix SH_RS01205 PF10437 Bacterial lipoate protein ligase C-terminus SH_RS01205 PF03099 Biotin/lipoate A/B protein ligase family SH_RS01215 PF01661 Macro domain SH_RS01220 PF01597 Glycine cleavage H-protein SH_RS01225 PF00296 Luciferase-like monooxygenase SH_RS01230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH_RS01235 PF04055 Radical SAM superfamily SH_RS01235 PF06968 Biotin and Thiamin Synthesis associated domain SH_RS01245 PF00939 Sodium:sulfate symporter transmembrane region SH_RS01250 PF05684 Protein of unknown function (DUF819) SH_RS01255 PF07286 Protein of unknown function (DUF1445) SH_RS01260 PF02028 BCCT, betaine/carnitine/choline family transporter SH_RS01265 PF01979 Amidohydrolase family SH_RS01275 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH_RS01280 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH_RS01285 PF01418 Helix-turn-helix domain, rpiR family SH_RS01285 PF01380 SIS domain SH_RS01290 PF00480 ROK family SH_RS01295 PF00701 Dihydrodipicolinate synthetase family SH_RS01300 PF00474 Sodium:solute symporter family SH_RS01320 PF02517 CPBP intramembrane metalloprotease SH_RS01325 PF00005 ABC transporter SH_RS01330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH_RS01330 PF00005 ABC transporter SH_RS01335 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS01340 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS01350 PF01470 Pyroglutamyl peptidase SH_RS01365 PF07690 Major Facilitator Superfamily SH_RS01370 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family SH_RS01380 PF17773 UPF0176 acylphosphatase like domain SH_RS01380 PF00581 Rhodanese-like domain SH_RS01380 PF12368 Rhodanase C-terminal SH_RS01385 PF08450 SMP-30/Gluconolactonase/LRE-like region SH_RS01390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH_RS01390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH_RS01390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH_RS01390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH_RS01410 PF06100 MCRA family SH_RS01415 PF17755 UvrA DNA-binding domain SH_RS01415 PF17760 UvrA interaction domain SH_RS01430 PF00005 ABC transporter SH_RS01440 PF01381 Helix-turn-helix SH_RS01445 PF02082 Transcriptional regulator SH_RS01450 PF00892 EamA-like transporter family SH_RS01455 PF07690 Major Facilitator Superfamily SH_RS01465 PF00149 Calcineurin-like phosphoesterase SH_RS01465 PF02872 5'-nucleotidase, C-terminal domain SH_RS01475 PF00005 ABC transporter SH_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS01485 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS01495 PF01610 Transposase SH_RS01495 PF13683 Integrase core domain SH_RS01530 PF00344 SecY translocase SH_RS01535 PF16993 Accessory Sec system protein Asp1 SH_RS01540 PF16929 Accessory Sec system GspB-transporter SH_RS01545 PF15432 Accessory Sec secretory system ASP3 SH_RS01550 PF07517 SecA DEAD-like domain SH_RS01550 PF01043 SecA preprotein cross-linking domain SH_RS01550 PF07516 SecA Wing and Scaffold domain SH_RS01555 PF00534 Glycosyl transferases group 1 SH_RS01565 PF00512 His Kinase A (phospho-acceptor) domain SH_RS01565 PF00672 HAMP domain SH_RS01580 PF00872 Transposase, Mutator family SH_RS01595 PF01625 Peptide methionine sulfoxide reductase SH_RS01605 PF13683 Integrase core domain SH_RS01605 PF01610 Transposase SH_RS01615 PF00296 Luciferase-like monooxygenase SH_RS01620 PF07690 Major Facilitator Superfamily SH_RS01630 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH_RS01635 PF03176 MMPL family SH_RS01640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS01640 PF03466 LysR substrate binding domain SH_RS01645 PF00149 Calcineurin-like phosphoesterase SH_RS01650 PF01468 GA module SH_RS01655 PF03606 C4-dicarboxylate anaerobic carrier SH_RS01660 PF00367 phosphotransferase system, EIIB SH_RS01660 PF02378 Phosphotransferase system, EIIC SH_RS01660 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH_RS01665 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH_RS01665 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH_RS01665 PF05257 CHAP domain SH_RS01665 PF05257 CHAP domain SH_RS01670 PF01061 ABC-2 type transporter SH_RS01695 PF02863 Arginine repressor, C-terminal domain SH_RS01695 PF01316 Arginine repressor, DNA binding domain SH_RS01705 PF13520 Amino acid permease SH_RS01710 PF00027 Cyclic nucleotide-binding domain SH_RS01720 PF00356 Bacterial regulatory proteins, lacI family SH_RS01725 PF00753 Metallo-beta-lactamase superfamily SH_RS01730 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS01730 PF00107 Zinc-binding dehydrogenase SH_RS01735 PF13630 SdpI/YhfL protein family SH_RS01740 PF09587 Bacterial capsule synthesis protein PGA_cap SH_RS01745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH_RS01745 PF00205 Thiamine pyrophosphate enzyme, central domain SH_RS01745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS01755 PF13683 Integrase core domain SH_RS01755 PF01610 Transposase SH_RS01790 PF02397 Bacterial sugar transferase SH_RS01795 PF02525 Flavodoxin-like fold SH_RS01800 PF02706 Chain length determinant protein SH_RS01805 PF13614 AAA domain SH_RS01815 PF02719 Polysaccharide biosynthesis protein SH_RS01820 PF02719 Polysaccharide biosynthesis protein SH_RS01820 PF08485 Polysaccharide biosynthesis protein C-terminal SH_RS01825 PF01370 NAD dependent epimerase/dehydratase family SH_RS01830 PF02350 UDP-N-acetylglucosamine 2-epimerase SH_RS01855 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH_RS01860 PF03816 Cell envelope-related transcriptional attenuator domain SH_RS01865 PF00245 Alkaline phosphatase SH_RS01870 PF00486 Transcriptional regulatory protein, C terminal SH_RS01870 PF00072 Response regulator receiver domain SH_RS01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS01880 PF00005 ABC transporter SH_RS01915 PF01507 Phosphoadenosine phosphosulfate reductase family SH_RS01920 PF00258 Flavodoxin SH_RS01920 PF00667 FAD binding domain SH_RS01920 PF00175 Oxidoreductase NAD-binding domain SH_RS01925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH_RS01925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH_RS01930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH_RS01935 PF14824 Sirohaem biosynthesis protein central SH_RS01940 PF01925 Sulfite exporter TauE/SafE SH_RS01945 PF14306 PUA-like domain SH_RS01945 PF01747 ATP-sulfurylase SH_RS01955 PF03600 Citrate transporter SH_RS01970 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH_RS01975 PF02028 BCCT, betaine/carnitine/choline family transporter SH_RS01985 PF00171 Aldehyde dehydrogenase family SH_RS01990 PF05199 GMC oxidoreductase SH_RS01990 PF00732 GMC oxidoreductase SH_RS01995 PF12833 Helix-turn-helix domain SH_RS02000 PF07687 Peptidase dimerisation domain SH_RS02000 PF01546 Peptidase family M20/M25/M40 SH_RS02005 PF07690 Major Facilitator Superfamily SH_RS02010 PF07687 Peptidase dimerisation domain SH_RS02010 PF01546 Peptidase family M20/M25/M40 SH_RS02025 PF00501 AMP-binding enzyme SH_RS02025 PF13193 AMP-binding enzyme C-terminal domain SH_RS02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS02035 PF03466 LysR substrate binding domain SH_RS02045 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH_RS02045 PF00391 PEP-utilising enzyme, mobile domain SH_RS02045 PF02896 PEP-utilising enzyme, TIM barrel domain SH_RS02050 PF03618 Kinase/pyrophosphorylase SH_RS02055 PF06039 Malate:quinone oxidoreductase (Mqo) SH_RS02075 PF00274 Fructose-bisphosphate aldolase class-I SH_RS02080 PF05191 Adenylate kinase, active site lid SH_RS02110 PF03180 NLPA lipoprotein SH_RS02115 PF00202 Aminotransferase class-III SH_RS02120 PF13520 Amino acid permease SH_RS02125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH_RS02125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS02125 PF00205 Thiamine pyrophosphate enzyme, central domain SH_RS02130 PF03306 Alpha-acetolactate decarboxylase SH_RS02160 PF02677 Epoxyqueuosine reductase QueH SH_RS02170 PF01180 Dihydroorotate dehydrogenase SH_RS02175 PF03881 Fructosamine kinase SH_RS02190 PF00561 alpha/beta hydrolase fold SH_RS02210 PF05979 Bacterial protein of unknown function (DUF896) SH_RS02215 PF00296 Luciferase-like monooxygenase SH_RS02225 PF01551 Peptidase family M23 SH_RS02235 PF03976 Polyphosphate kinase 2 (PPK2) SH_RS02250 PF01593 Flavin containing amine oxidoreductase SH_RS02255 PF00535 Glycosyl transferase family 2 SH_RS02265 PF01593 Flavin containing amine oxidoreductase SH_RS02270 PF00155 Aminotransferase class I and II SH_RS02275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS02275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS02280 PF00403 Heavy-metal-associated domain SH_RS02285 PF00403 Heavy-metal-associated domain SH_RS02300 PF14602 Hexapeptide repeat of succinyl-transferase SH_RS02300 PF12464 Maltose acetyltransferase SH_RS02305 PF00171 Aldehyde dehydrogenase family SH_RS02310 PF01610 Transposase SH_RS02310 PF13683 Integrase core domain SH_RS02330 PF01544 CorA-like Mg2+ transporter protein SH_RS02340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH_RS02340 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH_RS02345 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SH_RS02345 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SH_RS02350 PF00108 Thiolase, N-terminal domain SH_RS02350 PF02803 Thiolase, C-terminal domain SH_RS02355 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SH_RS02360 PF01476 LysM domain SH_RS02360 PF05257 CHAP domain SH_RS02370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS02370 PF03466 LysR substrate binding domain SH_RS02380 PF03788 LrgA family SH_RS02385 PF04172 LrgB-like family SH_RS02390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS02390 PF00205 Thiamine pyrophosphate enzyme, central domain SH_RS02390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH_RS02395 PF01610 Transposase SH_RS02395 PF13683 Integrase core domain SH_RS02400 PF00367 phosphotransferase system, EIIB SH_RS02400 PF02378 Phosphotransferase system, EIIC SH_RS02400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH_RS02405 PF00107 Zinc-binding dehydrogenase SH_RS02405 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS02415 PF00085 Thioredoxin SH_RS02420 PF00056 lactate/malate dehydrogenase, NAD binding domain SH_RS02420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH_RS02425 PF07859 alpha/beta hydrolase fold SH_RS02430 PF00892 EamA-like transporter family SH_RS02435 PF02311 AraC-like ligand binding domain SH_RS02435 PF12833 Helix-turn-helix domain SH_RS02445 PF08245 Mur ligase middle domain SH_RS02450 PF14102 Capsule biosynthesis CapC SH_RS02465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH_RS02465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH_RS02475 PF01842 ACT domain SH_RS02475 PF03315 Serine dehydratase beta chain SH_RS02480 PF03313 Serine dehydratase alpha chain SH_RS02495 PF04203 Sortase domain SH_RS02505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS02505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS02510 PF00881 Nitroreductase family SH_RS02515 PF00171 Aldehyde dehydrogenase family SH_RS02525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH_RS02540 PF00171 Aldehyde dehydrogenase family SH_RS02545 PF01047 MarR family SH_RS02550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH_RS02555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH_RS02560 PF01738 Dienelactone hydrolase family SH_RS02575 PF06874 Firmicute fructose-1,6-bisphosphatase SH_RS02580 PF09335 SNARE associated Golgi protein SH_RS02585 PF00899 ThiF family SH_RS02590 PF05690 Thiazole biosynthesis protein ThiG SH_RS02595 PF02597 ThiS family SH_RS02595 PF05690 Thiazole biosynthesis protein ThiG SH_RS02600 PF01266 FAD dependent oxidoreductase SH_RS02610 PF07690 Major Facilitator Superfamily SH_RS02625 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) SH_RS02630 PF04607 Region found in RelA / SpoT proteins SH_RS02645 PF00392 Bacterial regulatory proteins, gntR family SH_RS02645 PF07729 FCD domain SH_RS02650 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH_RS02650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH_RS02655 PF02447 GntP family permease SH_RS02665 PF00483 Nucleotidyl transferase SH_RS02670 PF02976 DNA mismatch repair enzyme MutH SH_RS02675 PF00145 C-5 cytosine-specific DNA methylase SH_RS02695 PF00106 short chain dehydrogenase SH_RS02700 PF01546 Peptidase family M20/M25/M40 SH_RS02700 PF07687 Peptidase dimerisation domain SH_RS02705 PF02503 Polyphosphate kinase middle domain SH_RS02705 PF17941 Polyphosphate kinase C-terminal domain 1 SH_RS02705 PF13089 Polyphosphate kinase N-terminal domain SH_RS02705 PF13090 Polyphosphate kinase C-terminal domain 2 SH_RS02710 PF02541 Ppx/GppA phosphatase family SH_RS02715 PF03806 AbgT putative transporter family SH_RS02725 PF05343 M42 glutamyl aminopeptidase SH_RS02735 PF01053 Cys/Met metabolism PLP-dependent enzyme SH_RS02740 PF01645 Conserved region in glutamate synthase SH_RS02755 PF00005 ABC transporter SH_RS02760 PF03649 Uncharacterised protein family (UPF0014) SH_RS02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS02765 PF00512 His Kinase A (phospho-acceptor) domain SH_RS02770 PF00486 Transcriptional regulatory protein, C terminal SH_RS02770 PF00072 Response regulator receiver domain SH_RS02780 PF07690 Major Facilitator Superfamily SH_RS02785 PF00135 Carboxylesterase family SH_RS02790 PF13520 Amino acid permease SH_RS02795 PF08818 Domain of unknown function (DU1801) SH_RS02800 PF00107 Zinc-binding dehydrogenase SH_RS02800 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS02805 PF00571 CBS domain SH_RS02805 PF00005 ABC transporter SH_RS02810 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS02815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH_RS02820 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS02825 PF04172 LrgB-like family SH_RS02830 PF03788 LrgA family SH_RS02835 PF04397 LytTr DNA-binding domain SH_RS02835 PF00072 Response regulator receiver domain SH_RS02840 PF06580 Histidine kinase SH_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS02840 PF07694 5TMR of 5TMR-LYT SH_RS02845 PF07690 Major Facilitator Superfamily SH_RS02850 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH_RS02850 PF02558 Ketopantoate reductase PanE/ApbA SH_RS02855 PF07274 Protein of unknown function (DUF1440) SH_RS02865 PF02096 60Kd inner membrane protein SH_RS02870 PF00144 Beta-lactamase SH_RS02875 PF13520 Amino acid permease SH_RS02880 PF00999 Sodium/hydrogen exchanger family SH_RS02885 PF00324 Amino acid permease SH_RS02905 PF13649 Methyltransferase domain SH_RS02910 PF04405 Domain of Unknown function (DUF542) SH_RS02910 PF01814 Hemerythrin HHE cation binding domain SH_RS02915 PF07690 Major Facilitator Superfamily SH_RS02925 PF02595 Glycerate kinase family SH_RS02940 PF16916 Dimerisation domain of Zinc Transporter SH_RS02940 PF01545 Cation efflux family SH_RS02950 PF00300 Histidine phosphatase superfamily (branch 1) SH_RS02955 PF07690 Major Facilitator Superfamily SH_RS02960 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH_RS02965 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS02970 PF00005 ABC transporter SH_RS02975 PF02388 FemAB family SH_RS02990 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH_RS02990 PF01297 Zinc-uptake complex component A periplasmic SH_RS02995 PF04264 YceI-like domain SH_RS03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS03020 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH_RS03020 PF04324 BFD-like [2Fe-2S] binding domain SH_RS03020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH_RS03020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH_RS03025 PF00355 Rieske [2Fe-2S] domain SH_RS03030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH_RS03035 PF01568 Molydopterin dinucleotide binding domain SH_RS03035 PF00384 Molybdopterin oxidoreductase SH_RS03035 PF14710 Respiratory nitrate reductase alpha N-terminal SH_RS03040 PF14711 Respiratory nitrate reductase beta C-terminal SH_RS03040 PF13247 4Fe-4S dicluster domain SH_RS03045 PF02613 Nitrate reductase delta subunit SH_RS03050 PF02665 Nitrate reductase gamma subunit SH_RS03060 PF07730 Histidine kinase SH_RS03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS03065 PF00196 Bacterial regulatory proteins, luxR family SH_RS03065 PF00072 Response regulator receiver domain SH_RS03070 PF07690 Major Facilitator Superfamily SH_RS03075 PF00011 Hsp20/alpha crystallin family SH_RS03080 PF01047 MarR family SH_RS03090 PF00375 Sodium:dicarboxylate symporter family SH_RS03100 PF16242 Pyridoxamine 5'-phosphate oxidase like SH_RS03105 PF12833 Helix-turn-helix domain SH_RS03115 PF02378 Phosphotransferase system, EIIC SH_RS03115 PF00367 phosphotransferase system, EIIB SH_RS03160 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS03165 PF00583 Acetyltransferase (GNAT) family SH_RS03170 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS03170 PF00107 Zinc-binding dehydrogenase SH_RS03175 PF09375 Imelysin SH_RS03180 PF10518 TAT (twin-arginine translocation) pathway signal sequence SH_RS03180 PF04261 Dyp-type peroxidase family SH_RS03185 PF03239 Iron permease FTR1 family SH_RS03190 PF00902 Sec-independent protein translocase protein (TatC) SH_RS03195 PF02416 mttA/Hcf106 family SH_RS03200 PF13673 Acetyltransferase (GNAT) domain SH_RS03205 PF00535 Glycosyl transferase family 2 SH_RS03205 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SH_RS03210 PF02652 L-lactate permease SH_RS03215 PF11380 Stealth protein CR2, conserved region 2 SH_RS03215 PF00534 Glycosyl transferases group 1 SH_RS03215 PF17102 Stealth protein CR3, conserved region 3 SH_RS03215 PF17103 Stealth protein CR4, conserved region 4 SH_RS03215 PF17101 Stealth protein CR1, conserved region 1 SH_RS03220 PF06039 Malate:quinone oxidoreductase (Mqo) SH_RS03230 PF04397 LytTr DNA-binding domain SH_RS03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS03235 PF00672 HAMP domain SH_RS03235 PF00512 His Kinase A (phospho-acceptor) domain SH_RS03240 PF00486 Transcriptional regulatory protein, C terminal SH_RS03240 PF00072 Response regulator receiver domain SH_RS03245 PF02687 FtsX-like permease family SH_RS03250 PF00005 ABC transporter SH_RS03260 PF12802 MarR family SH_RS03270 PF07690 Major Facilitator Superfamily SH_RS03285 PF07690 Major Facilitator Superfamily SH_RS03310 PF01544 CorA-like Mg2+ transporter protein SH_RS03315 PF01070 FMN-dependent dehydrogenase SH_RS03320 PF03616 Sodium/glutamate symporter SH_RS03325 PF02245 Methylpurine-DNA glycosylase (MPG) SH_RS03330 PF01381 Helix-turn-helix SH_RS03340 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH_RS03345 PF01263 Aldose 1-epimerase SH_RS03350 PF03473 MOSC domain SH_RS03350 PF03475 3-alpha domain SH_RS03355 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH_RS03360 PF01610 Transposase SH_RS03360 PF13683 Integrase core domain SH_RS03365 PF02517 CPBP intramembrane metalloprotease SH_RS03370 PF00491 Arginase family SH_RS03380 PF07687 Peptidase dimerisation domain SH_RS03380 PF01546 Peptidase family M20/M25/M40 SH_RS03390 PF01613 Flavin reductase like domain SH_RS03405 PF01418 Helix-turn-helix domain, rpiR family SH_RS03405 PF01380 SIS domain SH_RS03410 PF02378 Phosphotransferase system, EIIC SH_RS03410 PF00367 phosphotransferase system, EIIB SH_RS03420 PF13419 Haloacid dehalogenase-like hydrolase SH_RS03440 PF00324 Amino acid permease SH_RS03445 PF01418 Helix-turn-helix domain, rpiR family SH_RS03445 PF01380 SIS domain SH_RS03450 PF00367 phosphotransferase system, EIIB SH_RS03450 PF02378 Phosphotransferase system, EIIC SH_RS03455 PF01380 SIS domain SH_RS03470 PF13280 WYL domain SH_RS03470 PF08279 HTH domain SH_RS03480 PF03816 Cell envelope-related transcriptional attenuator domain SH_RS03485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH_RS03485 PF01568 Molydopterin dinucleotide binding domain SH_RS03485 PF00384 Molybdopterin oxidoreductase SH_RS03485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH_RS03485 PF12838 4Fe-4S dicluster domain SH_RS03490 PF07724 AAA domain (Cdc48 subfamily) SH_RS03490 PF10431 C-terminal, D2-small domain, of ClpB protein SH_RS03490 PF06689 ClpX C4-type zinc finger SH_RS03505 PF01494 FAD binding domain SH_RS03510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS03510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS03515 PF00893 Small Multidrug Resistance protein SH_RS03520 PF00893 Small Multidrug Resistance protein SH_RS03525 PF05257 CHAP domain SH_RS03535 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain SH_RS03535 PF02558 Ketopantoate reductase PanE/ApbA SH_RS03540 PF03553 Na+/H+ antiporter family SH_RS03545 PF13610 DDE domain SH_RS03555 PF05257 CHAP domain SH_RS03580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain SH_RS03580 PF02770 Acyl-CoA dehydrogenase, middle domain SH_RS03580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH_RS03585 PF01497 Periplasmic binding protein SH_RS03590 PF01156 Inosine-uridine preferring nucleoside hydrolase SH_RS03595 PF02632 BioY family SH_RS03605 PF02634 FdhD/NarQ family SH_RS03615 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS03620 PF00005 ABC transporter SH_RS03620 PF03459 TOBE domain SH_RS03625 PF00899 ThiF family SH_RS03630 PF00994 Probable molybdopterin binding domain SH_RS03635 PF01967 MoaC family SH_RS03640 PF03454 MoeA C-terminal region (domain IV) SH_RS03640 PF00994 Probable molybdopterin binding domain SH_RS03640 PF03453 MoeA N-terminal region (domain I and II) SH_RS03650 PF02391 MoaE protein SH_RS03655 PF02597 ThiS family SH_RS03660 PF12804 MobA-like NTP transferase domain SH_RS03665 PF06463 Molybdenum Cofactor Synthesis C SH_RS03665 PF04055 Radical SAM superfamily SH_RS03670 PF01047 MarR family SH_RS03680 PF01047 MarR family SH_RS03690 PF02388 FemAB family SH_RS03695 PF00873 AcrB/AcrD/AcrF family SH_RS03715 PF06800 Sugar transport protein SH_RS03725 PF01751 Toprim domain SH_RS03725 PF01131 DNA topoisomerase SH_RS03730 PF00860 Permease family SH_RS03740 PF00338 Ribosomal protein S10p/S20e SH_RS03745 PF00297 Ribosomal protein L3 SH_RS03750 PF00573 Ribosomal protein L4/L1 family SH_RS03755 PF00276 Ribosomal protein L23 SH_RS03760 PF00181 Ribosomal Proteins L2, RNA binding domain SH_RS03760 PF03947 Ribosomal Proteins L2, C-terminal domain SH_RS03765 PF00203 Ribosomal protein S19 SH_RS03770 PF00237 Ribosomal protein L22p/L17e SH_RS03775 PF07650 KH domain SH_RS03775 PF00189 Ribosomal protein S3, C-terminal domain SH_RS03780 PF00252 Ribosomal protein L16p/L10e SH_RS03785 PF00831 Ribosomal L29 protein SH_RS03790 PF00366 Ribosomal protein S17 SH_RS03795 PF00238 Ribosomal protein L14p/L23e SH_RS03800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH_RS03800 PF00467 KOW motif SH_RS03805 PF00673 ribosomal L5P family C-terminus SH_RS03805 PF00281 Ribosomal protein L5 SH_RS03810 PF00253 Ribosomal protein S14p/S29e SH_RS03815 PF00410 Ribosomal protein S8 SH_RS03820 PF00347 Ribosomal protein L6 SH_RS03825 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH_RS03830 PF03719 Ribosomal protein S5, C-terminal domain SH_RS03830 PF00333 Ribosomal protein S5, N-terminal domain SH_RS03835 PF00327 Ribosomal protein L30p/L7e SH_RS03840 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH_RS03845 PF00344 SecY translocase SH_RS03850 PF05191 Adenylate kinase, active site lid SH_RS03855 PF01176 Translation initiation factor 1A / IF-1 SH_RS03860 PF00444 Ribosomal protein L36 SH_RS03865 PF00416 Ribosomal protein S13/S18 SH_RS03870 PF00411 Ribosomal protein S11 SH_RS03875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH_RS03875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH_RS03875 PF01000 RNA polymerase Rpb3/RpoA insert domain SH_RS03880 PF01196 Ribosomal protein L17 SH_RS03885 PF01610 Transposase SH_RS03885 PF13683 Integrase core domain SH_RS03890 PF00005 ABC transporter SH_RS03895 PF00005 ABC transporter SH_RS03900 PF02361 Cobalt transport protein SH_RS03905 PF01416 tRNA pseudouridine synthase SH_RS03910 PF00572 Ribosomal protein L13 SH_RS03915 PF00380 Ribosomal protein S9/S16 SH_RS03920 PF02146 Sir2 family SH_RS03925 PF00455 DeoR C terminal sensor domain SH_RS03925 PF08220 DeoR-like helix-turn-helix domain SH_RS03935 PF02502 Ribose/Galactose Isomerase SH_RS03940 PF02502 Ribose/Galactose Isomerase SH_RS03945 PF00294 pfkB family carbohydrate kinase SH_RS03950 PF01791 DeoC/LacD family aldolase SH_RS03955 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH_RS03960 PF02378 Phosphotransferase system, EIIC SH_RS03960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH_RS03965 PF00232 Glycosyl hydrolase family 1 SH_RS03975 PF00296 Luciferase-like monooxygenase SH_RS03980 PF00107 Zinc-binding dehydrogenase SH_RS03980 PF08240 Alcohol dehydrogenase GroES-like domain SH_RS03985 PF02028 BCCT, betaine/carnitine/choline family transporter SH_RS04000 PF03780 Asp23 family, cell envelope-related function SH_RS04010 PF04183 IucA / IucC family SH_RS04010 PF06276 Ferric iron reductase FhuF-like transporter SH_RS04015 PF05977 Transmembrane secretion effector SH_RS04020 PF04183 IucA / IucC family SH_RS04020 PF06276 Ferric iron reductase FhuF-like transporter SH_RS04025 PF01168 Alanine racemase, N-terminal domain SH_RS04030 PF01497 Periplasmic binding protein SH_RS04035 PF01032 FecCD transport family SH_RS04040 PF01032 FecCD transport family SH_RS04045 PF07670 Nucleoside recognition SH_RS04050 PF03992 Antibiotic biosynthesis monooxygenase SH_RS04060 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH_RS04065 PF01704 UTP--glucose-1-phosphate uridylyltransferase SH_RS04070 PF03006 Haemolysin-III related SH_RS04075 PF07690 Major Facilitator Superfamily SH_RS04080 PF17080 Multidrug Resistance efflux pump SH_RS04085 PF07690 Major Facilitator Superfamily SH_RS04090 PF10609 NUBPL iron-transfer P-loop NTPase SH_RS04095 PF13683 Integrase core domain SH_RS04095 PF01610 Transposase SH_RS04145 PF02457 DisA bacterial checkpoint controller nucleotide-binding SH_RS04155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH_RS04155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH_RS04155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH_RS04155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH_RS04160 PF01380 SIS domain SH_RS04165 PF00005 ABC transporter SH_RS04190 PF01545 Cation efflux family SH_RS04190 PF16916 Dimerisation domain of Zinc Transporter SH_RS04195 PF01022 Bacterial regulatory protein, arsR family SH_RS04200 PF13460 NAD(P)H-binding SH_RS04205 PF01238 Phosphomannose isomerase type I SH_RS04225 PF00210 Ferritin-like domain SH_RS04230 PF01048 Phosphorylase superfamily SH_RS04235 PF01791 DeoC/LacD family aldolase SH_RS04240 PF02885 Glycosyl transferase family, helical bundle domain SH_RS04240 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH_RS04240 PF00591 Glycosyl transferase family, a/b domain SH_RS04245 PF01676 Metalloenzyme superfamily SH_RS04255 PF02664 S-Ribosylhomocysteinase (LuxS) SH_RS04275 PF03630 Fumble SH_RS04285 PF05066 HB1, ASXL, restriction endonuclease HTH domain SH_RS04290 PF00117 Glutamine amidotransferase class-I SH_RS04290 PF06418 CTP synthase N-terminus SH_RS04300 PF01116 Fructose-bisphosphate aldolase class-II SH_RS04305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH_RS04315 PF00171 Aldehyde dehydrogenase family SH_RS04320 PF07498 Rho termination factor, N-terminal domain SH_RS04320 PF07497 Rho termination factor, RNA-binding domain SH_RS04320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH_RS04325 PF01197 Ribosomal protein L31 SH_RS04330 PF00265 Thymidine kinase SH_RS04335 PF00472 RF-1 domain SH_RS04335 PF03462 PCRF domain SH_RS04340 PF05175 Methyltransferase small domain SH_RS04340 PF17827 PrmC N-terminal domain SH_RS04345 PF01300 Telomere recombination SH_RS04345 PF03481 Putative GTP-binding controlling metal-binding SH_RS04350 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH_RS04355 PF04260 Protein of unknown function (DUF436) SH_RS04360 PF00464 Serine hydroxymethyltransferase SH_RS04370 PF02350 UDP-N-acetylglucosamine 2-epimerase SH_RS04380 PF00119 ATP synthase A chain SH_RS04385 PF00137 ATP synthase subunit C SH_RS04390 PF00430 ATP synthase B/B' CF(0) SH_RS04395 PF00213 ATP synthase delta (OSCP) subunit SH_RS04400 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH_RS04400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH_RS04400 PF00306 ATP synthase alpha/beta chain, C terminal domain SH_RS04405 PF00231 ATP synthase SH_RS04410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH_RS04410 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH_RS04415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH_RS04415 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH_RS04425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH_RS04430 PF07977 FabA-like domain SH_RS04440 PF00436 Single-strand binding protein family SH_RS04445 PF06737 Transglycosylase-like domain SH_RS04450 PF03070 TENA/THI-4/PQQC family SH_RS04455 PF08543 Phosphomethylpyrimidine kinase SH_RS04460 PF02110 Hydroxyethylthiazole kinase family SH_RS04465 PF02581 Thiamine monophosphate synthase SH_RS04470 PF02096 60Kd inner membrane protein SH_RS04475 PF01610 Transposase SH_RS04475 PF13683 Integrase core domain SH_RS04480 PF01966 HD domain SH_RS04485 PF13396 Phospholipase_D-nuclease N-terminal SH_RS04485 PF13091 PLD-like domain SH_RS04490 PF02583 Metal-sensitive transcriptional repressor SH_RS04505 PF01098 Cell cycle protein SH_RS04510 PF07478 D-ala D-ala ligase C-terminus SH_RS04510 PF01820 D-ala D-ala ligase N-terminus SH_RS04515 PF01225 Mur ligase family, catalytic domain SH_RS04515 PF02875 Mur ligase family, glutamate ligase domain SH_RS04515 PF08245 Mur ligase middle domain SH_RS04520 PF00270 DEAD/DEAH box helicase SH_RS04520 PF00271 Helicase conserved C-terminal domain SH_RS04530 PF03703 Bacterial PH domain SH_RS04535 PF03703 Bacterial PH domain SH_RS04540 PF01648 4'-phosphopantetheinyl transferase superfamily SH_RS04545 PF00842 Alanine racemase, C-terminal domain SH_RS04545 PF01168 Alanine racemase, N-terminal domain SH_RS04555 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH_RS04560 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain SH_RS04560 PF07228 Stage II sporulation protein E (SpoIIE) SH_RS04565 PF01740 STAS domain SH_RS04570 PF13581 Histidine kinase-like ATPase domain SH_RS04575 PF04545 Sigma-70, region 4 SH_RS04575 PF04539 Sigma-70 region 3 SH_RS04575 PF04542 Sigma-70 region 2 SH_RS04580 PF00575 S1 RNA binding domain SH_RS04580 PF17674 HHH domain SH_RS04580 PF09371 Tex-like protein N-terminal domain SH_RS04580 PF16921 Tex protein YqgF-like domain SH_RS04585 PF10263 SprT-like family SH_RS04585 PF17283 SprT-like zinc ribbon domain SH_RS04620 PF00585 C-terminal regulatory domain of Threonine dehydratase SH_RS04620 PF00291 Pyridoxal-phosphate dependent enzyme SH_RS04625 PF00694 Aconitase C-terminal domain SH_RS04630 PF00330 Aconitase family (aconitate hydratase) SH_RS04635 PF00180 Isocitrate/isopropylmalate dehydrogenase SH_RS04640 PF00682 HMGL-like SH_RS04640 PF08502 LeuA allosteric (dimerisation) domain SH_RS04645 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH_RS04645 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH_RS04650 PF10369 Small subunit of acetolactate synthase SH_RS04655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS04655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH_RS04655 PF00205 Thiamine pyrophosphate enzyme, central domain SH_RS04660 PF00920 Dehydratase family SH_RS04665 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH_RS04670 PF00814 Glycoprotease family SH_RS04675 PF00583 Acetyltransferase (GNAT) family SH_RS04680 PF00814 Glycoprotease family SH_RS04685 PF12848 ABC transporter SH_RS04685 PF00005 ABC transporter SH_RS04685 PF16326 ABC transporter C-terminal domain SH_RS04690 PF06971 Putative DNA-binding protein N-terminus SH_RS04690 PF02629 CoA binding domain SH_RS04695 PF04143 Sulphur transport SH_RS04700 PF01206 Sulfurtransferase TusA SH_RS04705 PF00909 Ammonium Transporter Family SH_RS04710 PF00356 Bacterial regulatory proteins, lacI family SH_RS04710 PF13407 Periplasmic binding protein domain SH_RS04715 PF00251 Glycosyl hydrolases family 32 N-terminal domain SH_RS04715 PF08244 Glycosyl hydrolases family 32 C terminal SH_RS04720 PF00294 pfkB family carbohydrate kinase SH_RS04725 PF00072 Response regulator receiver domain SH_RS04725 PF04397 LytTr DNA-binding domain SH_RS04740 PF04647 Accessory gene regulator B SH_RS04745 PF00795 Carbon-nitrogen hydrolase SH_RS04760 PF02517 CPBP intramembrane metalloprotease SH_RS04765 PF00166 Chaperonin 10 Kd subunit SH_RS04770 PF00118 TCP-1/cpn60 chaperonin family SH_RS04775 PF00589 Phage integrase family SH_RS04775 PF14659 Phage integrase, N-terminal SAM-like domain SH_RS04780 PF00872 Transposase, Mutator family SH_RS04795 PF00872 Transposase, Mutator family SH_RS04840 PF00392 Bacterial regulatory proteins, gntR family SH_RS04845 PF00005 ABC transporter SH_RS04855 PF00005 ABC transporter SH_RS04890 PF10282 Lactonase, 7-bladed beta-propeller SH_RS04895 PF00171 Aldehyde dehydrogenase family SH_RS04900 PF01368 DHH family SH_RS04900 PF02833 DHHA2 domain SH_RS04905 PF00857 Isochorismatase family SH_RS04915 PF00800 Prephenate dehydratase SH_RS04915 PF01817 Chorismate mutase type II SH_RS04920 PF02898 Nitric oxide synthase, oxygenase domain SH_RS04925 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH_RS04925 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SH_RS04925 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH_RS04930 PF02540 NAD synthase SH_RS04935 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SH_RS04940 PF00206 Lyase SH_RS04940 PF10397 Adenylosuccinate lyase C-terminus SH_RS04945 PF01371 Trp repressor protein SH_RS04950 PF01884 PcrB family SH_RS04955 PF13361 UvrD-like helicase C-terminal domain SH_RS04955 PF00580 UvrD/REP helicase N-terminal domain SH_RS04960 PF12826 Helix-hairpin-helix motif SH_RS04960 PF00533 BRCA1 C Terminus (BRCT) domain SH_RS04960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH_RS04960 PF03120 NAD-dependent DNA ligase OB-fold domain SH_RS04960 PF01653 NAD-dependent DNA ligase adenylation domain SH_RS04965 PF07537 CamS sex pheromone cAM373 precursor SH_RS04970 PF01610 Transposase SH_RS04970 PF13683 Integrase core domain SH_RS04975 PF00474 Sodium:solute symporter family SH_RS04980 PF02686 Glu-tRNAGln amidotransferase C subunit SH_RS04985 PF01425 Amidase SH_RS04990 PF02637 GatB domain SH_RS04990 PF02934 GatB/GatE catalytic domain SH_RS04995 PF00781 Diacylglycerol kinase catalytic domain SH_RS05000 PF05958 tRNA (Uracil-5-)-methyltransferase SH_RS05010 PF00817 impB/mucB/samB family SH_RS05010 PF11799 impB/mucB/samB family C-terminal domain SH_RS05020 PF00210 Ferritin-like domain SH_RS05025 PF08245 Mur ligase middle domain SH_RS05025 PF08353 Domain of unknown function (DUF1727) SH_RS05030 PF07685 CobB/CobQ-like glutamine amidotransferase domain SH_RS05035 PF06081 Aromatic acid exporter family member 1 SH_RS05040 PF00557 Metallopeptidase family M24 SH_RS05045 PF00106 short chain dehydrogenase SH_RS05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS05065 PF07730 Histidine kinase SH_RS05070 PF00072 Response regulator receiver domain SH_RS05070 PF00196 Bacterial regulatory proteins, luxR family SH_RS05075 PF13683 Integrase core domain SH_RS05075 PF01610 Transposase SH_RS05080 PF03631 Virulence factor BrkB SH_RS05090 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH_RS05095 PF06569 Protein of unknown function (DUF1128) SH_RS05100 PF02073 Thermophilic metalloprotease (M29) SH_RS05105 PF03061 Thioesterase superfamily SH_RS05115 PF04055 Radical SAM superfamily SH_RS05115 PF08756 YfkB-like domain SH_RS05120 PF01965 DJ-1/PfpI family SH_RS05125 PF00912 Transglycosylase SH_RS05130 PF02631 RecX family SH_RS05140 PF00005 ABC transporter SH_RS05140 PF01476 LysM domain SH_RS05150 PF00872 Transposase, Mutator family SH_RS05155 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH_RS05160 PF14815 NUDIX domain SH_RS05160 PF00730 HhH-GPD superfamily base excision DNA repair protein SH_RS05165 PF04167 Protein of unknown function (DUF402) SH_RS05170 PF00005 ABC transporter SH_RS05170 PF00664 ABC transporter transmembrane region SH_RS05175 PF06081 Aromatic acid exporter family member 1 SH_RS05180 PF00202 Aminotransferase class-III SH_RS05185 PF00578 AhpC/TSA family SH_RS05190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS05190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS05195 PF00872 Transposase, Mutator family SH_RS05205 PF01475 Ferric uptake regulator family SH_RS05365 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS05370 PF00005 ABC transporter SH_RS05375 PF08331 Domain of unknown function (DUF1730) SH_RS05380 PF00588 SpoU rRNA Methylase family SH_RS05385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH_RS05395 PF00206 Lyase SH_RS05395 PF10415 Fumarase C C-terminus SH_RS05400 PF01479 S4 domain SH_RS05400 PF00849 RNA pseudouridylate synthase SH_RS05405 PF07730 Histidine kinase SH_RS05405 PF13185 GAF domain SH_RS05410 PF00196 Bacterial regulatory proteins, luxR family SH_RS05410 PF00072 Response regulator receiver domain SH_RS05420 PF04286 Protein of unknown function (DUF445) SH_RS05425 PF06133 Control of competence regulator ComK, YlbF/YmcA SH_RS05435 PF13514 AAA domain SH_RS05440 PF01966 HD domain SH_RS05440 PF01336 OB-fold nucleic acid binding domain SH_RS05445 PF00639 PPIC-type PPIASE domain SH_RS05460 PF01230 HIT domain SH_RS05465 PF00005 ABC transporter SH_RS05470 PF05975 Bacterial ABC transporter protein EcsB SH_RS05480 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH_RS05485 PF00762 Ferrochelatase SH_RS05490 PF01593 Flavin containing amine oxidoreductase SH_RS05540 PF00501 AMP-binding enzyme SH_RS05540 PF13193 AMP-binding enzyme C-terminal domain SH_RS05550 PF01809 Putative membrane protein insertion efficiency factor SH_RS05555 PF00293 NUDIX domain SH_RS05560 PF00326 Prolyl oligopeptidase family SH_RS05565 PF01293 Phosphoenolpyruvate carboxykinase SH_RS05570 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH_RS05570 PF02772 S-adenosylmethionine synthetase, central domain SH_RS05570 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH_RS05580 PF00248 Aldo/keto reductase family SH_RS05585 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH_RS05590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH_RS05600 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH_RS05615 PF04542 Sigma-70 region 2 SH_RS05615 PF00196 Bacterial regulatory proteins, luxR family SH_RS05625 PF13457 GW (Gly-Tryp) dipeptide domain SH_RS05625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH_RS05630 PF01610 Transposase SH_RS05630 PF13683 Integrase core domain SH_RS05640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH_RS05640 PF01872 RibD C-terminal domain SH_RS05645 PF00677 Lumazine binding domain SH_RS05650 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH_RS05650 PF00925 GTP cyclohydrolase II SH_RS05655 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH_RS05660 PF01619 Proline dehydrogenase SH_RS05665 PF12146 Serine aminopeptidase, S33 SH_RS05675 PF06962 Putative rRNA methylase SH_RS05680 PF04055 Radical SAM superfamily SH_RS05680 PF16199 Radical_SAM C-terminal domain SH_RS05685 PF07690 Major Facilitator Superfamily SH_RS05690 PF08264 Anticodon-binding domain of tRNA SH_RS05690 PF00133 tRNA synthetases class I (I, L, M and V) SH_RS05690 PF13603 Leucyl-tRNA synthetase, Domain 2 SH_RS05690 PF09334 tRNA synthetases class I (M) SH_RS05700 PF07564 Domain of Unknown Function (DUF1542) SH_RS05700 PF01468 GA module SH_RS05700 PF04650 YSIRK type signal peptide SH_RS05715 PF14667 Polysaccharide biosynthesis C-terminal domain SH_RS05715 PF01943 Polysaccharide biosynthesis protein SH_RS05720 PF00849 RNA pseudouridylate synthase SH_RS05720 PF01479 S4 domain SH_RS05730 PF01546 Peptidase family M20/M25/M40 SH_RS05735 PF01063 Amino-transferase class IV SH_RS05740 PF01636 Phosphotransferase enzyme family SH_RS05745 PF02390 Putative methyltransferase SH_RS05750 PF00753 Metallo-beta-lactamase superfamily SH_RS05760 PF05343 M42 glutamyl aminopeptidase SH_RS05765 PF00085 Thioredoxin SH_RS05770 PF07285 Protein of unknown function (DUF1444) SH_RS05775 PF14794 Domain of unknown function (DUF4479) SH_RS05775 PF01588 Putative tRNA binding domain SH_RS05780 PF09397 Ftsk gamma domain SH_RS05780 PF01580 FtsK/SpoIIIE family SH_RS05780 PF17854 FtsK alpha domain SH_RS05785 PF08245 Mur ligase middle domain SH_RS05785 PF01225 Mur ligase family, catalytic domain SH_RS05785 PF02875 Mur ligase family, glutamate ligase domain SH_RS05790 PF06103 Bacterial protein of unknown function (DUF948) SH_RS05800 PF00793 DAHP synthetase I family SH_RS05800 PF01817 Chorismate mutase type II SH_RS05805 PF00356 Bacterial regulatory proteins, lacI family SH_RS05810 PF00850 Histone deacetylase domain SH_RS05815 PF00583 Acetyltransferase (GNAT) family SH_RS05820 PF00501 AMP-binding enzyme SH_RS05820 PF13193 AMP-binding enzyme C-terminal domain SH_RS05825 PF01268 Formate--tetrahydrofolate ligase SH_RS05830 PF00905 Penicillin binding protein transpeptidase domain SH_RS05830 PF00912 Transglycosylase SH_RS05835 PF01479 S4 domain SH_RS05835 PF00579 tRNA synthetases class I (W and Y) SH_RS05845 PF07690 Major Facilitator Superfamily SH_RS05850 PF13683 Integrase core domain SH_RS05850 PF01610 Transposase SH_RS05855 PF13180 PDZ domain SH_RS05860 PF01553 Acyltransferase SH_RS05865 PF02378 Phosphotransferase system, EIIC SH_RS05865 PF00367 phosphotransferase system, EIIB SH_RS05875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS05875 PF01842 ACT domain SH_RS05875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS05880 PF00266 Aminotransferase class-V SH_RS05885 PF02566 OsmC-like protein SH_RS05890 PF03009 Glycerophosphoryl diester phosphodiesterase family SH_RS05900 PF00163 Ribosomal protein S4/S9 N-terminal domain SH_RS05900 PF01479 S4 domain SH_RS05905 PF13185 GAF domain SH_RS05910 PF06160 Septation ring formation regulator, EzrA SH_RS05915 PF00266 Aminotransferase class-V SH_RS05920 PF02568 Thiamine biosynthesis protein (ThiI) SH_RS05920 PF02926 THUMP domain SH_RS05925 PF01925 Sulfite exporter TauE/SafE SH_RS05930 PF08534 Redoxin SH_RS05935 PF02384 N-6 DNA Methylase SH_RS05940 PF00871 Acetokinase family SH_RS05945 PF00582 Universal stress protein family SH_RS05950 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH_RS05950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH_RS05955 PF01321 Creatinase/Prolidase N-terminal domain SH_RS05955 PF00557 Metallopeptidase family M24 SH_RS05970 PF07085 DRTGG domain SH_RS05970 PF00392 Bacterial regulatory proteins, gntR family SH_RS05970 PF00571 CBS domain SH_RS05970 PF03061 Thioesterase superfamily SH_RS05975 PF02272 DHHA1 domain SH_RS05975 PF01368 DHH family SH_RS05980 PF02811 PHP domain SH_RS05980 PF14579 Helix-hairpin-helix motif SH_RS05980 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH_RS05980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH_RS05980 PF01336 OB-fold nucleic acid binding domain SH_RS05985 PF03949 Malic enzyme, NAD binding domain SH_RS05985 PF00390 Malic enzyme, N-terminal domain SH_RS05990 PF01039 Carboxyl transferase domain SH_RS05990 PF17848 Acetyl-coA carboxylase zinc finger domain SH_RS05995 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH_RS06000 PF00365 Phosphofructokinase SH_RS06005 PF00391 PEP-utilising enzyme, mobile domain SH_RS06005 PF02887 Pyruvate kinase, alpha/beta domain SH_RS06005 PF00224 Pyruvate kinase, barrel domain SH_RS06010 PF01207 Dihydrouridine synthase (Dus) SH_RS06015 PF00324 Amino acid permease SH_RS06020 PF00285 Citrate synthase, C-terminal domain SH_RS06025 PF00180 Isocitrate/isopropylmalate dehydrogenase SH_RS06030 PF00486 Transcriptional regulatory protein, C terminal SH_RS06030 PF00072 Response regulator receiver domain SH_RS06035 PF00512 His Kinase A (phospho-acceptor) domain SH_RS06035 PF00989 PAS fold SH_RS06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS06035 PF16736 Single Cache-like SH_RS06040 PF00476 DNA polymerase family A SH_RS06040 PF01367 5'-3' exonuclease, C-terminal SAM fold SH_RS06040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH_RS06045 PF06827 Zinc finger found in FPG and IleRS SH_RS06045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH_RS06045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH_RS06050 PF01121 Dephospho-CoA kinase SH_RS06055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH_RS06055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH_RS06060 PF03477 ATP cone domain SH_RS06070 PF07319 Primosomal protein DnaI N-terminus SH_RS06070 PF01695 IstB-like ATP binding protein SH_RS06075 PF03129 Anticodon binding domain SH_RS06075 PF02824 TGS domain SH_RS06075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH_RS06075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS06080 PF00324 Amino acid permease SH_RS06085 PF00707 Translation initiation factor IF-3, C-terminal domain SH_RS06085 PF05198 Translation initiation factor IF-3, N-terminal domain SH_RS06090 PF01632 Ribosomal protein L35 SH_RS06095 PF00453 Ribosomal protein L20 SH_RS06110 PF05697 Bacterial trigger factor protein (TF) SH_RS06110 PF05698 Bacterial trigger factor protein (TF) C-terminus SH_RS06110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH_RS06115 PF10431 C-terminal, D2-small domain, of ClpB protein SH_RS06115 PF07724 AAA domain (Cdc48 subfamily) SH_RS06115 PF06689 ClpX C4-type zinc finger SH_RS06120 PF01610 Transposase SH_RS06120 PF13683 Integrase core domain SH_RS06130 PF01926 50S ribosome-binding GTPase SH_RS06135 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH_RS06135 PF01488 Shikimate / quinate 5-dehydrogenase SH_RS06135 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH_RS06140 PF01578 Cytochrome C assembly protein SH_RS06145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH_RS06145 PF03900 Porphobilinogen deaminase, C-terminal domain SH_RS06155 PF00490 Delta-aminolevulinic acid dehydratase SH_RS06160 PF00202 Aminotransferase class-III SH_RS06170 PF03352 Methyladenine glycosylase SH_RS06175 PF08264 Anticodon-binding domain of tRNA SH_RS06175 PF00133 tRNA synthetases class I (I, L, M and V) SH_RS06175 PF10458 Valyl tRNA synthetase tRNA binding arm SH_RS06180 PF08245 Mur ligase middle domain SH_RS06180 PF02875 Mur ligase family, glutamate ligase domain SH_RS06185 PF04002 RadC-like JAB domain SH_RS06205 PF04085 rod shape-determining protein MreC SH_RS06215 PF00829 Ribosomal prokaryotic L21 protein SH_RS06220 PF04327 Cysteine protease Prp SH_RS06225 PF01016 Ribosomal L27 protein SH_RS06230 PF01926 50S ribosome-binding GTPase SH_RS06230 PF01018 GTP1/OBG SH_RS06230 PF09269 Domain of unknown function (DUF1967) SH_RS06240 PF07499 RuvA, C-terminal domain SH_RS06240 PF01330 RuvA N terminal domain SH_RS06245 PF17864 RuvB AAA lid domain SH_RS06245 PF05491 RuvB C-terminal winged helix domain SH_RS06245 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH_RS06250 PF02547 Queuosine biosynthesis protein SH_RS06255 PF01702 Queuine tRNA-ribosyltransferase SH_RS06260 PF02699 Preprotein translocase subunit SH_RS06265 PF07549 SecD/SecF GG Motif SH_RS06265 PF02355 Protein export membrane protein SH_RS06270 PF01368 DHH family SH_RS06270 PF02272 DHHA1 domain SH_RS06270 PF17768 RecJ OB domain SH_RS06270 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SH_RS06275 PF00156 Phosphoribosyl transferase domain SH_RS06280 PF02824 TGS domain SH_RS06280 PF04607 Region found in RelA / SpoT proteins SH_RS06280 PF13291 ACT domain SH_RS06285 PF02580 D-Tyr-tRNA(Tyr) deacylase SH_RS06290 PF01520 N-acetylmuramoyl-L-alanine amidase SH_RS06290 PF08239 Bacterial SH3 domain SH_RS06295 PF03129 Anticodon binding domain SH_RS06295 PF13393 Histidyl-tRNA synthetase SH_RS06300 PF00152 tRNA synthetases class II (D, K and N) SH_RS06300 PF02938 GAD domain SH_RS06300 PF01336 OB-fold nucleic acid binding domain SH_RS06305 PF00899 ThiF family SH_RS06310 PF16193 AAA C-terminal domain SH_RS06310 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH_RS06310 PF12002 MgsA AAA+ ATPase C terminal SH_RS06315 PF02082 Transcriptional regulator SH_RS06320 PF00296 Luciferase-like monooxygenase SH_RS06325 PF00266 Aminotransferase class-V SH_RS06340 PF13538 UvrD-like helicase C-terminal domain SH_RS06340 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SH_RS06340 PF14490 Helix-hairpin-helix containing domain SH_RS06345 PF02272 DHHA1 domain SH_RS06345 PF01411 tRNA synthetases class II (A) SH_RS06345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH_RS06350 PF06135 IreB regulatory phosphoprotein SH_RS06355 PF03652 Holliday junction resolvase SH_RS06360 PF06949 Protein of unknown function (DUF1292) SH_RS06370 PF01136 Peptidase family U32 SH_RS06375 PF16325 Peptidase family U32 C-terminal domain SH_RS06375 PF01136 Peptidase family U32 SH_RS06380 PF00485 Phosphoribulokinase / Uridine kinase family SH_RS06385 PF01272 Transcription elongation factor, GreA/GreB, C-term SH_RS06385 PF03449 Transcription elongation factor, N-terminal SH_RS06390 PF02682 Carboxyltransferase domain, subdomain C and D SH_RS06395 PF02626 Carboxyltransferase domain, subdomain A and B SH_RS06400 PF00364 Biotin-requiring enzyme SH_RS06405 PF00289 Biotin carboxylase, N-terminal domain SH_RS06405 PF02785 Biotin carboxylase C-terminal domain SH_RS06405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH_RS06410 PF03746 LamB/YcsF family SH_RS06415 PF01566 Natural resistance-associated macrophage protein SH_RS06420 PF01048 Phosphorylase superfamily SH_RS06430 PF01926 50S ribosome-binding GTPase SH_RS06435 PF01488 Shikimate / quinate 5-dehydrogenase SH_RS06435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH_RS06435 PF08501 Shikimate dehydrogenase substrate binding domain SH_RS06440 PF01985 CRS1 / YhbY (CRM) domain SH_RS06445 PF01467 Cytidylyltransferase-like SH_RS06450 PF01966 HD domain SH_RS06460 PF13649 Methyltransferase domain SH_RS06465 PF10531 SLBB domain SH_RS06470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH_RS06475 PF03772 Competence protein SH_RS06475 PF00753 Metallo-beta-lactamase superfamily SH_RS06475 PF13567 Domain of unknown function (DUF4131) SH_RS06480 PF06144 DNA polymerase III, delta subunit SH_RS06490 PF01649 Ribosomal protein S20 SH_RS06495 PF06421 GTP-binding protein LepA C-terminus SH_RS06495 PF00679 Elongation factor G C-terminus SH_RS06495 PF03144 Elongation factor Tu domain 2 SH_RS06495 PF00009 Elongation factor Tu GTP binding domain SH_RS06500 PF06969 HemN C-terminal domain SH_RS06500 PF04055 Radical SAM superfamily SH_RS06505 PF01628 HrcA protein C terminal domain SH_RS06510 PF01025 GrpE SH_RS06515 PF00012 Hsp70 protein SH_RS06520 PF00684 DnaJ central domain SH_RS06520 PF01556 DnaJ C terminal domain SH_RS06520 PF00226 DnaJ domain SH_RS06530 PF04452 RNA methyltransferase SH_RS06535 PF00919 Uncharacterized protein family UPF0004 SH_RS06535 PF04055 Radical SAM superfamily SH_RS06535 PF01938 TRAM domain SH_RS06540 PF01165 Ribosomal protein S21 SH_RS06545 PF01957 NfeD-like C-terminal, partner-binding SH_RS06545 PF01972 Serine dehydrogenase proteinase SH_RS06550 PF12127 SigmaW regulon antibacterial SH_RS06560 PF02562 PhoH-like protein SH_RS06565 PF02130 Uncharacterized protein family UPF0054 SH_RS06570 PF01219 Prokaryotic diacylglycerol kinase SH_RS06575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH_RS06580 PF07650 KH domain SH_RS06580 PF01926 50S ribosome-binding GTPase SH_RS06585 PF02565 Recombination protein O C terminal SH_RS06585 PF11967 Recombination protein O N terminal SH_RS06590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH_RS06590 PF03129 Anticodon binding domain SH_RS06595 PF08279 HTH domain SH_RS06595 PF00571 CBS domain SH_RS06600 PF03618 Kinase/pyrophosphorylase SH_RS06605 PF08275 DNA primase catalytic core, N-terminal domain SH_RS06605 PF01807 CHC2 zinc finger SH_RS06605 PF00772 DnaB-like helicase N terminal domain SH_RS06610 PF03979 Sigma-70 factor, region 1.1 SH_RS06610 PF04545 Sigma-70, region 4 SH_RS06610 PF04539 Sigma-70 region 3 SH_RS06610 PF04542 Sigma-70 region 2 SH_RS06610 PF00140 Sigma-70 factor, region 1.2 SH_RS06615 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SH_RS06620 PF01784 NIF3 (NGG1p interacting factor 3) SH_RS06625 PF00270 DEAD/DEAH box helicase SH_RS06625 PF00271 Helicase conserved C-terminal domain SH_RS06630 PF01261 Xylose isomerase-like TIM barrel SH_RS06635 PF00005 ABC transporter SH_RS06640 PF00950 ABC 3 transport family SH_RS06645 PF01475 Ferric uptake regulator family SH_RS06650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH_RS06650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH_RS06655 PF03717 Penicillin-binding Protein dimerisation domain SH_RS06655 PF00905 Penicillin binding protein transpeptidase domain SH_RS06660 PF00471 Ribosomal protein L33 SH_RS06665 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH_RS06675 PF06014 Bacterial protein of unknown function (DUF910) SH_RS06680 PF00480 ROK family SH_RS06685 PF01910 Thiamine-binding protein SH_RS06690 PF00753 Metallo-beta-lactamase superfamily SH_RS06695 PF00437 Type II/IV secretion system protein SH_RS06700 PF00482 Type II secretion system (T2SS), protein F SH_RS06705 PF07963 Prokaryotic N-terminal methylation motif SH_RS06730 PF01202 Shikimate kinase SH_RS06735 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH_RS06735 PF01571 Aminomethyltransferase folate-binding domain SH_RS06740 PF02347 Glycine cleavage system P-protein SH_RS06745 PF00266 Aminotransferase class-V SH_RS06750 PF00581 Rhodanese-like domain SH_RS06755 PF03099 Biotin/lipoate A/B protein ligase family SH_RS06770 PF00557 Metallopeptidase family M24 SH_RS06770 PF01321 Creatinase/Prolidase N-terminal domain SH_RS06775 PF01132 Elongation factor P (EF-P) OB domain SH_RS06775 PF08207 Elongation factor P (EF-P) KOW-like domain SH_RS06775 PF09285 Elongation factor P, C-terminal SH_RS06780 PF00364 Biotin-requiring enzyme SH_RS06785 PF02785 Biotin carboxylase C-terminal domain SH_RS06785 PF00289 Biotin carboxylase, N-terminal domain SH_RS06785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH_RS06790 PF03780 Asp23 family, cell envelope-related function SH_RS06795 PF01029 NusB family SH_RS06800 PF13742 OB-fold nucleic acid binding domain SH_RS06800 PF02601 Exonuclease VII, large subunit SH_RS06805 PF02609 Exonuclease VII small subunit SH_RS06810 PF00348 Polyprenyl synthetase SH_RS06815 PF01316 Arginine repressor, DNA binding domain SH_RS06815 PF02863 Arginine repressor, C-terminal domain SH_RS06820 PF13476 AAA domain SH_RS06825 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS06825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS06830 PF00676 Dehydrogenase E1 component SH_RS06835 PF02779 Transketolase, pyrimidine binding domain SH_RS06835 PF02780 Transketolase, C-terminal domain SH_RS06840 PF00364 Biotin-requiring enzyme SH_RS06840 PF02817 e3 binding domain SH_RS06840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH_RS06845 PF06491 Disulphide isomerase SH_RS06850 PF06081 Aromatic acid exporter family member 1 SH_RS06850 PF11728 Putative aromatic acid exporter C-terminal domain SH_RS06860 PF07687 Peptidase dimerisation domain SH_RS06860 PF01546 Peptidase family M20/M25/M40 SH_RS06865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH_RS06865 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH_RS06870 PF00356 Bacterial regulatory proteins, lacI family SH_RS06875 PF16657 Maltogenic Amylase, C-terminal domain SH_RS06875 PF00128 Alpha amylase, catalytic domain SH_RS06885 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH_RS06885 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH_RS06890 PF12706 Beta-lactamase superfamily domain SH_RS06895 PF03807 NADP oxidoreductase coenzyme F420-dependent SH_RS06895 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH_RS06900 PF00106 short chain dehydrogenase SH_RS06910 PF00248 Aldo/keto reductase family SH_RS06915 PF00293 NUDIX domain SH_RS06920 PF01475 Ferric uptake regulator family SH_RS06925 PF00589 Phage integrase family SH_RS06925 PF02899 Phage integrase, N-terminal SAM-like domain SH_RS06935 PF02616 Segregation and condensation protein ScpA SH_RS06940 PF04079 Segregation and condensation complex subunit ScpB SH_RS06945 PF01479 S4 domain SH_RS06945 PF00849 RNA pseudouridylate synthase SH_RS06950 PF00072 Response regulator receiver domain SH_RS06950 PF00486 Transcriptional regulatory protein, C terminal SH_RS06955 PF00672 HAMP domain SH_RS06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS06955 PF00512 His Kinase A (phospho-acceptor) domain SH_RS06955 PF18698 Histidine kinase sensor domain SH_RS06960 PF12822 ECF transporter, substrate-specific component SH_RS06975 PF00271 Helicase conserved C-terminal domain SH_RS06975 PF00270 DEAD/DEAH box helicase SH_RS06980 PF01476 LysM domain SH_RS06990 PF00710 Asparaginase, N-terminal SH_RS06990 PF17763 Glutaminase/Asparaginase C-terminal domain SH_RS06995 PF02224 Cytidylate kinase SH_RS07000 PF00575 S1 RNA binding domain SH_RS07005 PF01926 50S ribosome-binding GTPase SH_RS07005 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH_RS07010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH_RS07010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH_RS07015 PF00216 Bacterial DNA-binding protein SH_RS07030 PF01209 ubiE/COQ5 methyltransferase family SH_RS07035 PF00348 Polyprenyl synthetase SH_RS07040 PF00334 Nucleoside diphosphate kinase SH_RS07045 PF01264 Chorismate synthase SH_RS07050 PF01761 3-dehydroquinate synthase SH_RS07055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH_RS07065 PF08858 IDEAL domain SH_RS07065 PF08864 UPF0302 domain SH_RS07070 PF07187 Protein of unknown function (DUF1405) SH_RS07075 PF04298 Putative neutral zinc metallopeptidase SH_RS07080 PF03819 MazG nucleotide pyrophosphohydrolase domain SH_RS07085 PF00534 Glycosyl transferases group 1 SH_RS07085 PF13439 Glycosyltransferase Family 4 SH_RS07090 PF12627 Probable RNA and SrmB- binding site of polymerase A SH_RS07090 PF13735 tRNA nucleotidyltransferase domain 2 putative SH_RS07090 PF01743 Poly A polymerase head domain SH_RS07095 PF02237 Biotin protein ligase C terminal domain SH_RS07095 PF03099 Biotin/lipoate A/B protein ligase family SH_RS07095 PF08279 HTH domain SH_RS07100 PF04851 Type III restriction enzyme, res subunit SH_RS07100 PF00929 Exonuclease SH_RS07100 PF13307 Helicase C-terminal domain SH_RS07105 PF01336 OB-fold nucleic acid binding domain SH_RS07105 PF00152 tRNA synthetases class II (D, K and N) SH_RS07110 PF07261 Replication initiation and membrane attachment SH_RS07115 PF00633 Helix-hairpin-helix motif SH_RS07115 PF00730 HhH-GPD superfamily base excision DNA repair protein SH_RS07115 PF10576 Iron-sulfur binding domain of endonuclease III SH_RS07125 PF00912 Transglycosylase SH_RS07125 PF00905 Penicillin binding protein transpeptidase domain SH_RS07130 PF03838 Recombination protein U SH_RS07140 PF06908 YspA SLOG family SH_RS07145 PF05103 DivIVA protein SH_RS07150 PF01170 Putative RNA methylase family UPF0020 SH_RS07150 PF02926 THUMP domain SH_RS07160 PF00350 Dynamin family SH_RS07165 PF01367 5'-3' exonuclease, C-terminal SAM fold SH_RS07165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH_RS07170 PF04650 YSIRK type signal peptide SH_RS07170 PF01468 GA module SH_RS07170 PF07564 Domain of Unknown Function (DUF1542) SH_RS07175 PF04650 YSIRK type signal peptide SH_RS07175 PF07564 Domain of Unknown Function (DUF1542) SH_RS07175 PF01468 GA module SH_RS07185 PF02592 Putative vitamin uptake transporter SH_RS07190 PF13769 Virulence factor SH_RS07190 PF08712 Scaffold protein Nfu/NifU N terminal SH_RS07195 PF08712 Scaffold protein Nfu/NifU N terminal SH_RS07195 PF13769 Virulence factor SH_RS07200 PF06491 Disulphide isomerase SH_RS07205 PF00303 Thymidylate synthase SH_RS07210 PF00186 Dihydrofolate reductase SH_RS07215 PF02645 Uncharacterised protein, DegV family COG1307 SH_RS07220 PF01625 Peptide methionine sulfoxide reductase SH_RS07225 PF01641 SelR domain SH_RS07230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH_RS07235 PF06855 YozE SAM-like fold SH_RS07240 PF03572 Peptidase family S41 SH_RS07240 PF01471 Putative peptidoglycan binding domain SH_RS07240 PF17820 PDZ domain SH_RS07250 PF04101 Glycosyltransferase family 28 C-terminal domain SH_RS07250 PF03033 Glycosyltransferase family 28 N-terminal domain SH_RS07255 PF01569 PAP2 superfamily SH_RS07260 PF00072 Response regulator receiver domain SH_RS07260 PF00486 Transcriptional regulatory protein, C terminal SH_RS07265 PF18719 ArlS sensor domain SH_RS07265 PF00512 His Kinase A (phospho-acceptor) domain SH_RS07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS07270 PF02779 Transketolase, pyrimidine binding domain SH_RS07270 PF00676 Dehydrogenase E1 component SH_RS07270 PF16870 2-oxoglutarate dehydrogenase C-terminal SH_RS07275 PF00364 Biotin-requiring enzyme SH_RS07275 PF02817 e3 binding domain SH_RS07275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH_RS07285 PF00872 Transposase, Mutator family SH_RS07300 PF08406 CbbQ/NirQ/NorQ C-terminal SH_RS07300 PF07728 AAA domain (dynein-related subfamily) SH_RS07305 PF00092 von Willebrand factor type A domain SH_RS07310 PF05525 Branched-chain amino acid transport protein SH_RS07320 PF05816 Toxic anion resistance protein (TelA) SH_RS07330 PF00708 Acylphosphatase SH_RS07340 PF00313 'Cold-shock' DNA-binding domain SH_RS07350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH_RS07350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH_RS07355 PF01168 Alanine racemase, N-terminal domain SH_RS07355 PF00842 Alanine racemase, C-terminal domain SH_RS07360 PF01546 Peptidase family M20/M25/M40 SH_RS07365 PF00132 Bacterial transferase hexapeptide (six repeats) SH_RS07365 PF14602 Hexapeptide repeat of succinyl-transferase SH_RS07365 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SH_RS07370 PF05173 Dihydrodipicolinate reductase, C-terminus SH_RS07370 PF01113 Dihydrodipicolinate reductase, N-terminus SH_RS07375 PF00701 Dihydrodipicolinate synthetase family SH_RS07380 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH_RS07380 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH_RS07385 PF00696 Amino acid kinase family SH_RS07385 PF13840 ACT domain SH_RS07390 PF12848 ABC transporter SH_RS07390 PF00005 ABC transporter SH_RS07395 PF13509 S1 domain SH_RS07395 PF17783 CvfB-like winged helix domain SH_RS07400 PF12849 PBP superfamily domain SH_RS07405 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS07410 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS07415 PF00005 ABC transporter SH_RS07420 PF01895 PhoU domain SH_RS07425 PF01432 Peptidase family M3 SH_RS07425 PF08439 Oligopeptidase F SH_RS07435 PF01497 Periplasmic binding protein SH_RS07445 PF02388 FemAB family SH_RS07450 PF02388 FemAB family SH_RS07465 PF00290 Tryptophan synthase alpha chain SH_RS07470 PF00291 Pyridoxal-phosphate dependent enzyme SH_RS07475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH_RS07480 PF00218 Indole-3-glycerol phosphate synthase SH_RS07485 PF00591 Glycosyl transferase family, a/b domain SH_RS07490 PF00117 Glutamine amidotransferase class-I SH_RS07495 PF00425 chorismate binding enzyme SH_RS07495 PF04715 Anthranilate synthase component I, N terminal region SH_RS07500 PF05343 M42 glutamyl aminopeptidase SH_RS07505 PF02153 Prephenate dehydrogenase SH_RS07510 PF11799 impB/mucB/samB family C-terminal domain SH_RS07510 PF00817 impB/mucB/samB family SH_RS07510 PF11798 IMS family HHH motif SH_RS07515 PF01361 Tautomerase enzyme SH_RS07520 PF03816 Cell envelope-related transcriptional attenuator domain SH_RS07525 PF01625 Peptide methionine sulfoxide reductase SH_RS07530 PF03706 Lysylphosphatidylglycerol synthase TM region SH_RS07530 PF09924 Uncharacterised conserved protein (DUF2156) SH_RS07535 PF01594 AI-2E family transporter SH_RS07540 PF00874 PRD domain SH_RS07540 PF03123 CAT RNA binding domain SH_RS07545 PF01235 Sodium:alanine symporter family SH_RS07550 PF03989 DNA gyrase C-terminal domain, beta-propeller SH_RS07550 PF00521 DNA gyrase/topoisomerase IV, subunit A SH_RS07555 PF00204 DNA gyrase B SH_RS07555 PF01751 Toprim domain SH_RS07555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS07555 PF00986 DNA gyrase B subunit, carboxyl terminus SH_RS07560 PF02660 Glycerol-3-phosphate acyltransferase SH_RS07570 PF03061 Thioesterase superfamily SH_RS07575 PF00330 Aconitase family (aconitate hydratase) SH_RS07575 PF00694 Aconitase C-terminal domain SH_RS07580 PF02028 BCCT, betaine/carnitine/choline family transporter SH_RS07585 PF01741 Large-conductance mechanosensitive channel, MscL SH_RS07590 PF13476 AAA domain SH_RS07595 PF00149 Calcineurin-like phosphoesterase SH_RS07600 PF07301 Protein of unknown function (DUF1453) SH_RS07610 PF02780 Transketolase, C-terminal domain SH_RS07610 PF00456 Transketolase, thiamine diphosphate binding domain SH_RS07610 PF02779 Transketolase, pyrimidine binding domain SH_RS07615 PF05979 Bacterial protein of unknown function (DUF896) SH_RS07625 PF00717 Peptidase S24-like SH_RS07625 PF01726 LexA DNA binding domain SH_RS07630 PF14504 CAP-associated N-terminal SH_RS07630 PF00188 Cysteine-rich secretory protein family SH_RS07635 PF00478 IMP dehydrogenase / GMP reductase domain SH_RS07640 PF00253 Ribosomal protein S14p/S29e SH_RS07645 PF00471 Ribosomal protein L33 SH_RS07650 PF06628 Catalase-related immune-responsive SH_RS07650 PF00199 Catalase SH_RS07655 PF00324 Amino acid permease SH_RS07670 PF00288 GHMP kinases N terminal domain SH_RS07670 PF08544 GHMP kinases C terminal SH_RS07675 PF00291 Pyridoxal-phosphate dependent enzyme SH_RS07680 PF00742 Homoserine dehydrogenase SH_RS07680 PF03447 Homoserine dehydrogenase, NAD binding domain SH_RS07680 PF01842 ACT domain SH_RS07685 PF00696 Amino acid kinase family SH_RS07685 PF13840 ACT domain SH_RS07700 PF00565 Staphylococcal nuclease homologue SH_RS07715 PF00072 Response regulator receiver domain SH_RS07715 PF00196 Bacterial regulatory proteins, luxR family SH_RS07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS07720 PF07730 Histidine kinase SH_RS07730 PF00005 ABC transporter SH_RS07735 PF13396 Phospholipase_D-nuclease N-terminal SH_RS07735 PF13091 PLD-like domain SH_RS07785 PF00120 Glutamine synthetase, catalytic domain SH_RS07785 PF03951 Glutamine synthetase, beta-Grasp domain SH_RS07790 PF13411 MerR HTH family regulatory protein SH_RS07795 PF06838 Methionine gamma-lyase SH_RS07800 PF01926 50S ribosome-binding GTPase SH_RS07800 PF16360 GTP-binding GTPase Middle Region SH_RS07800 PF13167 GTP-binding GTPase N-terminal SH_RS07805 PF00255 Glutathione peroxidase SH_RS07810 PF17209 Hfq protein SH_RS07825 PF01266 FAD dependent oxidoreductase SH_RS07825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH_RS07830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH_RS07830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH_RS07835 PF00872 Transposase, Mutator family SH_RS07840 PF01636 Phosphotransferase enzyme family SH_RS07845 PF00583 Acetyltransferase (GNAT) family SH_RS07850 PF00872 Transposase, Mutator family SH_RS07855 PF00230 Major intrinsic protein SH_RS07865 PF01119 DNA mismatch repair protein, C-terminal domain SH_RS07865 PF08676 MutL C terminal dimerisation domain SH_RS07870 PF05192 MutS domain III SH_RS07870 PF05188 MutS domain II SH_RS07870 PF01624 MutS domain I SH_RS07870 PF00488 MutS domain V SH_RS07870 PF05190 MutS family domain IV SH_RS07880 PF06133 Control of competence regulator ComK, YlbF/YmcA SH_RS07885 PF04055 Radical SAM superfamily SH_RS07885 PF00919 Uncharacterized protein family UPF0004 SH_RS07885 PF01938 TRAM domain SH_RS07895 PF05908 Poly-gamma-glutamate hydrolase SH_RS07900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS07905 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH_RS07905 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH_RS07905 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH_RS07910 PF13277 YmdB-like protein SH_RS07920 PF12072 Domain of unknown function (DUF3552) SH_RS07920 PF00013 KH domain SH_RS07920 PF01966 HD domain SH_RS07925 PF00154 recA bacterial DNA recombination protein SH_RS07930 PF02464 Competence-damaged protein SH_RS07930 PF18146 Damage-inducible protein CinA KH domain SH_RS07930 PF00994 Probable molybdopterin binding domain SH_RS07935 PF01066 CDP-alcohol phosphatidyltransferase SH_RS07945 PF11868 Protein of unknown function (DUF3388) SH_RS07955 PF00675 Insulinase (Peptidase family M16) SH_RS07955 PF05193 Peptidase M16 inactive domain SH_RS07960 PF05193 Peptidase M16 inactive domain SH_RS07965 PF07702 UTRA domain SH_RS07965 PF00392 Bacterial regulatory proteins, gntR family SH_RS07970 PF01580 FtsK/SpoIIIE family SH_RS07970 PF09397 Ftsk gamma domain SH_RS07970 PF17854 FtsK alpha domain SH_RS07975 PF17770 Ribonuclease J C-terminal domain SH_RS07975 PF00753 Metallo-beta-lactamase superfamily SH_RS07975 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SH_RS07980 PF00575 S1 RNA binding domain SH_RS07980 PF00013 KH domain SH_RS07980 PF03725 3' exoribonuclease family, domain 2 SH_RS07980 PF01138 3' exoribonuclease family, domain 1 SH_RS07980 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH_RS07985 PF00312 Ribosomal protein S15 SH_RS07990 PF06574 FAD synthetase SH_RS07990 PF01687 Riboflavin kinase SH_RS07995 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH_RS07995 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH_RS08000 PF13683 Integrase core domain SH_RS08000 PF01610 Transposase SH_RS08005 PF02033 Ribosome-binding factor A SH_RS08010 PF11987 Translation-initiation factor 2 SH_RS08010 PF00009 Elongation factor Tu GTP binding domain SH_RS08010 PF04760 Translation initiation factor IF-2, N-terminal region SH_RS08015 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SH_RS08020 PF04296 Protein of unknown function (DUF448) SH_RS08025 PF00575 S1 RNA binding domain SH_RS08025 PF13184 NusA-like KH domain SH_RS08025 PF08529 NusA N-terminal domain SH_RS08030 PF02576 RimP N-terminal domain SH_RS08030 PF17384 RimP C-terminal SH3 domain SH_RS08035 PF14480 DNA polymerase III polC-type N-terminus I SH_RS08035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH_RS08035 PF00929 Exonuclease SH_RS08035 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH_RS08035 PF11490 DNA polymerase III polC-type N-terminus II SH_RS08035 PF02811 PHP domain SH_RS08035 PF14579 Helix-hairpin-helix motif SH_RS08040 PF04073 Aminoacyl-tRNA editing domain SH_RS08040 PF03129 Anticodon binding domain SH_RS08040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH_RS08045 PF02163 Peptidase family M50 SH_RS08045 PF13180 PDZ domain SH_RS08055 PF01255 Putative undecaprenyl diphosphate synthase SH_RS08060 PF01765 Ribosome recycling factor SH_RS08065 PF00696 Amino acid kinase family SH_RS08070 PF00889 Elongation factor TS SH_RS08075 PF00318 Ribosomal protein S2 SH_RS08080 PF06018 CodY GAF-like domain SH_RS08080 PF08222 CodY helix-turn-helix domain SH_RS08085 PF10431 C-terminal, D2-small domain, of ClpB protein SH_RS08085 PF07724 AAA domain (Cdc48 subfamily) SH_RS08090 PF00227 Proteasome subunit SH_RS08095 PF00589 Phage integrase family SH_RS08095 PF02899 Phage integrase, N-terminal SAM-like domain SH_RS08100 PF01134 Glucose inhibited division protein A SH_RS08105 PF01131 DNA topoisomerase SH_RS08105 PF01751 Toprim domain SH_RS08105 PF01396 Topoisomerase DNA binding C4 zinc finger SH_RS08110 PF02481 DNA recombination-mediator protein A SH_RS08115 PF02388 FemAB family SH_RS08120 PF00549 CoA-ligase SH_RS08120 PF02629 CoA binding domain SH_RS08125 PF00549 CoA-ligase SH_RS08125 PF08442 ATP-grasp domain SH_RS08130 PF01351 Ribonuclease HII SH_RS08135 PF01926 50S ribosome-binding GTPase SH_RS08140 PF09586 Bacterial membrane protein YfhO SH_RS08150 PF01245 Ribosomal protein L19 SH_RS08155 PF01746 tRNA (Guanine-1)-methyltransferase SH_RS08160 PF05239 PRC-barrel domain SH_RS08160 PF01782 RimM N-terminal domain SH_RS08165 PF00886 Ribosomal protein S16 SH_RS08170 PF02881 SRP54-type protein, helical bundle domain SH_RS08170 PF02978 Signal peptide binding domain SH_RS08170 PF00448 SRP54-type protein, GTPase domain SH_RS08175 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SH_RS08180 PF00448 SRP54-type protein, GTPase domain SH_RS08180 PF02881 SRP54-type protein, helical bundle domain SH_RS08185 PF06470 SMC proteins Flexible Hinge Domain SH_RS08185 PF02463 RecF/RecN/SMC N terminal domain SH_RS08190 PF14622 Ribonuclease-III-like SH_RS08190 PF00035 Double-stranded RNA binding motif SH_RS08195 PF00550 Phosphopantetheine attachment site SH_RS08205 PF00698 Acyl transferase domain SH_RS08210 PF02504 Fatty acid synthesis protein SH_RS08215 PF01575 MaoC like domain SH_RS08220 PF17191 RecG wedge domain SH_RS08220 PF00271 Helicase conserved C-terminal domain SH_RS08220 PF00270 DEAD/DEAH box helicase SH_RS08225 PF00565 Staphylococcal nuclease homologue SH_RS08230 PF13684 Dihydroxyacetone kinase family SH_RS08230 PF02734 DAK2 domain SH_RS08235 PF03780 Asp23 family, cell envelope-related function SH_RS08240 PF00830 Ribosomal L28 family SH_RS08245 PF04263 Thiamin pyrophosphokinase, catalytic domain SH_RS08245 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SH_RS08250 PF00834 Ribulose-phosphate 3 epimerase family SH_RS08255 PF16745 RsgA N-terminal domain SH_RS08255 PF03193 RsgA GTPase SH_RS08260 PF00069 Protein kinase domain SH_RS08260 PF03793 PASTA domain SH_RS08270 PF04055 Radical SAM superfamily SH_RS08275 PF01189 16S rRNA methyltransferase RsmB/F SH_RS08275 PF01029 NusB family SH_RS08280 PF02911 Formyl transferase, C-terminal domain SH_RS08280 PF00551 Formyl transferase SH_RS08285 PF01327 Polypeptide deformylase SH_RS08295 PF04851 Type III restriction enzyme, res subunit SH_RS08295 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH_RS08295 PF18074 Primosomal protein N C-terminal domain SH_RS08295 PF17764 3′ DNA-binding domain (3′BD) SH_RS08295 PF00271 Helicase conserved C-terminal domain SH_RS08300 PF02441 Flavoprotein SH_RS08300 PF04127 DNA / pantothenate metabolism flavoprotein SH_RS08305 PF01192 RNA polymerase Rpb6 SH_RS08310 PF00625 Guanylate kinase SH_RS08315 PF05670 NFACT protein RNA binding domain SH_RS08330 PF00156 Phosphoribosyl transferase domain SH_RS08335 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH_RS08340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH_RS08340 PF02142 MGS-like domain SH_RS08340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH_RS08345 PF00117 Glutamine amidotransferase class-I SH_RS08345 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH_RS08350 PF01979 Amidohydrolase family SH_RS08355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH_RS08355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH_RS08360 PF00860 Permease family SH_RS08365 PF00156 Phosphoribosyl transferase domain SH_RS08370 PF00849 RNA pseudouridylate synthase SH_RS08370 PF01479 S4 domain SH_RS08375 PF01252 Signal peptidase (SPase) II SH_RS08380 PF05257 CHAP domain SH_RS08380 PF01476 LysM domain SH_RS08390 PF11066 Protein of unknown function (DUF2867) SH_RS08390 PF13460 NAD(P)H-binding SH_RS08395 PF08264 Anticodon-binding domain of tRNA SH_RS08395 PF00133 tRNA synthetases class I (I, L, M and V) SH_RS08395 PF06827 Zinc finger found in FPG and IleRS SH_RS08400 PF05103 DivIVA protein SH_RS08410 PF02325 YGGT family SH_RS08415 PF04472 Cell division protein SepF SH_RS08420 PF01168 Alanine racemase, N-terminal domain SH_RS08425 PF02578 Multi-copper polyphenol oxidoreductase laccase SH_RS08430 PF12327 FtsZ family, C-terminal domain SH_RS08430 PF00091 Tubulin/FtsZ family, GTPase domain SH_RS08435 PF02491 SHS2 domain inserted in FTSA SH_RS08440 PF08478 POTRA domain, FtsQ-type SH_RS08440 PF03799 Cell division protein FtsQ SH_RS08445 PF02875 Mur ligase family, glutamate ligase domain SH_RS08445 PF08245 Mur ligase middle domain SH_RS08450 PF00953 Glycosyl transferase family 4 SH_RS08455 PF03717 Penicillin-binding Protein dimerisation domain SH_RS08455 PF00905 Penicillin binding protein transpeptidase domain SH_RS08455 PF03793 PASTA domain SH_RS08460 PF04977 Septum formation initiator SH_RS08465 PF01795 MraW methylase family SH_RS08470 PF02381 MraZ protein, putative antitoxin-like SH_RS08475 PF10079 Bacillithiol biosynthesis BshC SH_RS08485 PF13419 Haloacid dehalogenase-like hydrolase SH_RS08530 PF08460 Bacterial SH3 domain SH_RS08530 PF05257 CHAP domain SH_RS08530 PF01520 N-acetylmuramoyl-L-alanine amidase SH_RS08595 PF13401 AAA domain SH_RS08600 PF00665 Integrase core domain SH_RS08600 PF09299 Mu transposase, C-terminal SH_RS08605 PF00239 Resolvase, N terminal domain SH_RS08605 PF02796 Helix-turn-helix domain of resolvase SH_RS08610 PF03965 Penicillinase repressor SH_RS08615 PF00905 Penicillin binding protein transpeptidase domain SH_RS08615 PF05569 BlaR1 peptidase M56 SH_RS08620 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH_RS08750 PF00436 Single-strand binding protein family SH_RS08790 PF08346 AntA/AntB antirepressor SH_RS08790 PF10548 P22AR C-terminal domain SH_RS08800 PF01381 Helix-turn-helix SH_RS08815 PF14659 Phage integrase, N-terminal SAM-like domain SH_RS08815 PF00589 Phage integrase family SH_RS08820 PF12850 Calcineurin-like phosphoesterase superfamily domain SH_RS08825 PF01725 Ham1 family SH_RS08830 PF01177 Asp/Glu/Hydantoin racemase SH_RS08835 PF13183 4Fe-4S dicluster domain SH_RS08835 PF13085 2Fe-2S iron-sulfur cluster binding domain SH_RS08840 PF02910 Fumarate reductase flavoprotein C-term SH_RS08840 PF00890 FAD binding domain SH_RS08845 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH_RS08850 PF02151 UvrB/uvrC motif SH_RS08850 PF01541 GIY-YIG catalytic domain SH_RS08850 PF08459 UvrC Helix-hairpin-helix N-terminal SH_RS08855 PF00085 Thioredoxin SH_RS08860 PF00488 MutS domain V SH_RS08860 PF01713 Smr domain SH_RS08865 PF02811 PHP domain SH_RS08865 PF14716 Helix-hairpin-helix domain SH_RS08865 PF14791 DNA polymerase beta thumb SH_RS08875 PF05164 Cell division protein ZapA SH_RS08880 PF01351 Ribonuclease HII SH_RS08880 PF11858 Domain of unknown function (DUF3378) SH_RS08885 PF03483 B3/4 domain SH_RS08885 PF01588 Putative tRNA binding domain SH_RS08885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH_RS08885 PF03484 tRNA synthetase B5 domain SH_RS08885 PF03147 Ferredoxin-fold anticodon binding domain SH_RS08890 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH_RS08890 PF01409 tRNA synthetases class II core domain (F) SH_RS08895 PF00588 SpoU rRNA Methylase family SH_RS08895 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH_RS08900 PF01783 Ribosomal L32p protein family SH_RS08910 PF05636 HIGH Nucleotidyl Transferase SH_RS08915 PF01467 Cytidylyltransferase-like SH_RS08930 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SH_RS08935 PF03009 Glycerophosphoryl diester phosphodiesterase family SH_RS08940 PF06133 Control of competence regulator ComK, YlbF/YmcA SH_RS08945 PF00188 Cysteine-rich secretory protein family SH_RS08945 PF14504 CAP-associated N-terminal SH_RS08955 PF01040 UbiA prenyltransferase family SH_RS08960 PF02628 Cytochrome oxidase assembly protein SH_RS08965 PF00364 Biotin-requiring enzyme SH_RS08965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH_RS08965 PF02785 Biotin carboxylase C-terminal domain SH_RS08965 PF00289 Biotin carboxylase, N-terminal domain SH_RS08965 PF00682 HMGL-like SH_RS08965 PF02436 Conserved carboxylase domain SH_RS08970 PF01098 Cell cycle protein SH_RS08975 PF07408 Protein of unknown function (DUF1507) SH_RS08985 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) SH_RS08990 PF00679 Elongation factor G C-terminus SH_RS08990 PF03144 Elongation factor Tu domain 2 SH_RS08990 PF14492 Elongation Factor G, domain II SH_RS08990 PF00009 Elongation factor Tu GTP binding domain SH_RS09000 PF00459 Inositol monophosphatase family SH_RS09005 PF06335 Protein of unknown function (DUF1054) SH_RS09010 PF01566 Natural resistance-associated macrophage protein SH_RS09025 PF13416 Bacterial extracellular solute-binding protein SH_RS09030 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS09035 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS09040 PF00005 ABC transporter SH_RS09040 PF08402 TOBE domain SH_RS09045 PF06114 IrrE N-terminal-like domain SH_RS09045 PF01381 Helix-turn-helix SH_RS09045 PF09856 Predicted transcriptional regulator (DUF2083) SH_RS09050 PF05256 Uncharacterised protein family (UPF0223) SH_RS09055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS09055 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS09060 PF00364 Biotin-requiring enzyme SH_RS09060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH_RS09060 PF02817 e3 binding domain SH_RS09065 PF02780 Transketolase, C-terminal domain SH_RS09065 PF02779 Transketolase, pyrimidine binding domain SH_RS09070 PF00676 Dehydrogenase E1 component SH_RS09080 PF01327 Polypeptide deformylase SH_RS09085 PF07288 Protein of unknown function (DUF1447) SH_RS09090 PF00753 Metallo-beta-lactamase superfamily SH_RS09090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SH_RS09090 PF17770 Ribonuclease J C-terminal domain SH_RS09100 PF04304 Protein of unknown function (DUF454) SH_RS09105 PF02254 TrkA-N domain SH_RS09105 PF02080 TrkA-C domain SH_RS09110 PF02322 Cytochrome bd terminal oxidase subunit II SH_RS09115 PF01654 Cytochrome bd terminal oxidase subunit I SH_RS09130 PF05524 PEP-utilising enzyme, N-terminal SH_RS09130 PF00391 PEP-utilising enzyme, mobile domain SH_RS09130 PF02896 PEP-utilising enzyme, TIM barrel domain SH_RS09135 PF00381 PTS HPr component phosphorylation site SH_RS09145 PF10672 S-adenosylmethionine-dependent methyltransferase SH_RS09145 PF17785 PUA-like domain SH_RS09160 PF00005 ABC transporter SH_RS09165 PF02361 Cobalt transport protein SH_RS09170 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH_RS09170 PF02843 Phosphoribosylglycinamide synthetase, C domain SH_RS09170 PF02844 Phosphoribosylglycinamide synthetase, N domain SH_RS09175 PF01808 AICARFT/IMPCHase bienzyme SH_RS09175 PF02142 MGS-like domain SH_RS09180 PF00551 Formyl transferase SH_RS09185 PF00586 AIR synthase related protein, N-terminal domain SH_RS09185 PF02769 AIR synthase related protein, C-terminal domain SH_RS09190 PF00156 Phosphoribosyl transferase domain SH_RS09190 PF13537 Glutamine amidotransferase domain SH_RS09195 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH_RS09195 PF02769 AIR synthase related protein, C-terminal domain SH_RS09195 PF00586 AIR synthase related protein, N-terminal domain SH_RS09205 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SH_RS09210 PF01259 SAICAR synthetase SH_RS09215 PF02222 ATP-grasp domain SH_RS09215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH_RS09215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS09220 PF00731 AIR carboxylase SH_RS09225 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH_RS09225 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH_RS09240 PF00175 Oxidoreductase NAD-binding domain SH_RS09240 PF00970 Oxidoreductase FAD-binding domain SH_RS09240 PF00042 Globin SH_RS09250 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH_RS09250 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SH_RS09255 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH_RS09260 PF00510 Cytochrome c oxidase subunit III SH_RS09265 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH_RS09270 PF01156 Inosine-uridine preferring nucleoside hydrolase SH_RS09275 PF00872 Transposase, Mutator family SH_RS09280 PF00144 Beta-lactamase SH_RS09285 PF03816 Cell envelope-related transcriptional attenuator domain SH_RS09290 PF10804 Protein of unknown function (DUF2538) SH_RS09295 PF13673 Acetyltransferase (GNAT) domain SH_RS09300 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH_RS09300 PF13457 GW (Gly-Tryp) dipeptide domain SH_RS09305 PF01610 Transposase SH_RS09305 PF13683 Integrase core domain SH_RS09320 PF01757 Acyltransferase family SH_RS09325 PF00155 Aminotransferase class I and II SH_RS09330 PF00378 Enoyl-CoA hydratase/isomerase SH_RS09335 PF12697 Alpha/beta hydrolase family SH_RS09340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH_RS09340 PF16582 Middle domain of thiamine pyrophosphate SH_RS09340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH_RS09345 PF00425 chorismate binding enzyme SH_RS09350 PF01040 UbiA prenyltransferase family SH_RS09385 PF01610 Transposase SH_RS09385 PF13683 Integrase core domain SH_RS09400 PF03099 Biotin/lipoate A/B protein ligase family SH_RS09400 PF10437 Bacterial lipoate protein ligase C-terminus SH_RS09415 PF02386 Cation transport protein SH_RS09420 PF13180 PDZ domain SH_RS09425 PF03741 Integral membrane protein TerC family SH_RS09430 PF16658 Class II release factor RF3, C-terminal domain SH_RS09430 PF03144 Elongation factor Tu domain 2 SH_RS09430 PF00009 Elongation factor Tu GTP binding domain SH_RS09440 PF02875 Mur ligase family, glutamate ligase domain SH_RS09440 PF01225 Mur ligase family, catalytic domain SH_RS09440 PF08245 Mur ligase middle domain SH_RS09445 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase SH_RS09445 PF04101 Glycosyltransferase family 28 C-terminal domain SH_RS09450 PF07690 Major Facilitator Superfamily SH_RS09460 PF00756 Putative esterase SH_RS09465 PF01594 AI-2E family transporter SH_RS09475 PF02080 TrkA-C domain SH_RS09475 PF02254 TrkA-N domain SH_RS09475 PF00999 Sodium/hydrogen exchanger family SH_RS09480 PF00571 CBS domain SH_RS09480 PF03448 MgtE intracellular N domain SH_RS09480 PF01769 Divalent cation transporter SH_RS09485 PF00849 RNA pseudouridylate synthase SH_RS09490 PF01513 ATP-NAD kinase SH_RS09495 PF04607 Region found in RelA / SpoT proteins SH_RS09505 PF01928 CYTH domain SH_RS09510 PF01152 Bacterial-like globin SH_RS09520 PF08439 Oligopeptidase F SH_RS09520 PF01432 Peptidase family M3 SH_RS09530 PF01610 Transposase SH_RS09530 PF13683 Integrase core domain SH_RS09535 PF05389 Negative regulator of genetic competence (MecA) SH_RS09540 PF03960 ArsC family SH_RS09545 PF00579 tRNA synthetases class I (W and Y) SH_RS09555 PF01610 Transposase SH_RS09555 PF13683 Integrase core domain SH_RS09560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH_RS09565 PF00005 ABC transporter SH_RS09565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH_RS09570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH_RS09570 PF00005 ABC transporter SH_RS09575 PF12911 N-terminal TM domain of oligopeptide transport permease C SH_RS09575 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS09580 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS09590 PF00109 Beta-ketoacyl synthase, N-terminal domain SH_RS09590 PF02801 Beta-ketoacyl synthase, C-terminal domain SH_RS09595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH_RS09595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH_RS09605 PF10431 C-terminal, D2-small domain, of ClpB protein SH_RS09605 PF02861 Clp amino terminal domain, pathogenicity island component SH_RS09605 PF00004 ATPase family associated with various cellular activities (AAA) SH_RS09605 PF17871 AAA lid domain SH_RS09605 PF07724 AAA domain (Cdc48 subfamily) SH_RS09610 PF01757 Acyltransferase family SH_RS09615 PF01883 Iron-sulfur cluster assembly protein SH_RS09625 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS09625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS09630 PF07457 Protein of unknown function (DUF1516) SH_RS09635 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH_RS09640 PF12705 PD-(D/E)XK nuclease superfamily SH_RS09640 PF00580 UvrD/REP helicase N-terminal domain SH_RS09640 PF13361 UvrD-like helicase C-terminal domain SH_RS09645 PF13361 UvrD-like helicase C-terminal domain SH_RS09645 PF12705 PD-(D/E)XK nuclease superfamily SH_RS09650 PF10502 Signal peptidase, peptidase S26 SH_RS09655 PF10502 Signal peptidase, peptidase S26 SH_RS09660 PF09335 SNARE associated Golgi protein SH_RS09665 PF00342 Phosphoglucose isomerase SH_RS09670 PF00764 Arginosuccinate synthase SH_RS09675 PF14698 Argininosuccinate lyase C-terminal SH_RS09675 PF00206 Lyase SH_RS09680 PF03009 Glycerophosphoryl diester phosphodiesterase family SH_RS09685 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH_RS09685 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH_RS09690 PF00202 Aminotransferase class-III SH_RS09695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH_RS09700 PF00575 S1 RNA binding domain SH_RS09705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH_RS09715 PF00361 Proton-conducting membrane transporter SH_RS09715 PF13244 Domain of unknown function (DUF4040) SH_RS09715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH_RS09720 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SH_RS09725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH_RS09730 PF00361 Proton-conducting membrane transporter SH_RS09735 PF01899 Na+/H+ ion antiporter subunit SH_RS09740 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SH_RS09745 PF03334 Na+/H+ antiporter subunit SH_RS09755 PF03061 Thioesterase superfamily SH_RS09760 PF13726 Na+-H+ antiporter family SH_RS09760 PF03553 Na+/H+ antiporter family SH_RS09765 PF02789 Cytosol aminopeptidase family, N-terminal domain SH_RS09765 PF00883 Cytosol aminopeptidase family, catalytic domain SH_RS09770 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS09775 PF01521 Iron-sulphur cluster biosynthesis SH_RS09780 PF07293 Protein of unknown function (DUF1450) SH_RS09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS09790 PF07315 Protein of unknown function (DUF1462) SH_RS09795 PF01106 NifU-like domain SH_RS09805 PF04914 DltD protein SH_RS09810 PF00550 Phosphopantetheine attachment site SH_RS09815 PF03062 MBOAT, membrane-bound O-acyltransferase family SH_RS09820 PF13193 AMP-binding enzyme C-terminal domain SH_RS09820 PF00501 AMP-binding enzyme SH_RS09830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH_RS09830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH_RS09835 PF13344 Haloacid dehalogenase-like hydrolase SH_RS09840 PF01934 Protein of unknown function DUF86 SH_RS09850 PF06265 Protein of unknown function (DUF1027) SH_RS09855 PF04055 Radical SAM superfamily SH_RS09855 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH_RS09860 PF02872 5'-nucleotidase, C-terminal domain SH_RS09865 PF01925 Sulfite exporter TauE/SafE SH_RS09870 PF01904 Protein of unknown function DUF72 SH_RS09875 PF03060 Nitronate monooxygenase SH_RS09880 PF00872 Transposase, Mutator family SH_RS09890 PF01458 Uncharacterized protein family (UPF0051) SH_RS09895 PF01592 NifU-like N terminal domain SH_RS09900 PF00266 Aminotransferase class-V SH_RS09905 PF01458 Uncharacterized protein family (UPF0051) SH_RS09910 PF00005 ABC transporter SH_RS09925 PF05532 CsbD-like SH_RS09930 PF03180 NLPA lipoprotein SH_RS09935 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS09940 PF00005 ABC transporter SH_RS09940 PF09383 NIL domain SH_RS09950 PF01751 Toprim domain SH_RS09955 PF01597 Glycine cleavage H-protein SH_RS09960 PF03960 ArsC family SH_RS09965 PF00085 Thioredoxin SH_RS09975 PF01487 Type I 3-dehydroquinase SH_RS09980 PF02566 OsmC-like protein SH_RS09990 PF01810 LysE type translocator SH_RS09995 PF00300 Histidine phosphatase superfamily (branch 1) SH_RS10040 PF00583 Acetyltransferase (GNAT) family SH_RS10045 PF05908 Poly-gamma-glutamate hydrolase SH_RS10065 PF13683 Integrase core domain SH_RS10065 PF01610 Transposase SH_RS10195 PF01668 SmpB protein SH_RS10200 PF17876 Cold shock domain SH_RS10200 PF00773 RNB domain SH_RS10200 PF00575 S1 RNA binding domain SH_RS10200 PF08206 Ribonuclease B OB domain SH_RS10205 PF12146 Serine aminopeptidase, S33 SH_RS10210 PF03840 Preprotein translocase SecG subunit SH_RS10220 PF03952 Enolase, N-terminal domain SH_RS10220 PF00113 Enolase, C-terminal TIM barrel domain SH_RS10225 PF01676 Metalloenzyme superfamily SH_RS10225 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH_RS10230 PF00121 Triosephosphate isomerase SH_RS10235 PF00162 Phosphoglycerate kinase SH_RS10240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH_RS10240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH_RS10245 PF04198 Putative sugar-binding domain SH_RS10265 PF08338 Domain of unknown function (DUF1731) SH_RS10265 PF01370 NAD dependent epimerase/dehydratase family SH_RS10270 PF00574 Clp protease SH_RS10280 PF02650 WhiA C-terminal HTH domain SH_RS10280 PF10298 WhiA N-terminal LAGLIDADG-like domain SH_RS10280 PF14527 WhiA LAGLIDADG-like domain SH_RS10285 PF01933 Uncharacterised protein family UPF0052 SH_RS10290 PF03668 P-loop ATPase protein family SH_RS10295 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS10305 PF14602 Hexapeptide repeat of succinyl-transferase SH_RS10310 PF01790 Prolipoprotein diacylglyceryl transferase SH_RS10315 PF02603 HPr Serine kinase N terminus SH_RS10315 PF07475 HPr Serine kinase C-terminal domain SH_RS10320 PF00005 ABC transporter SH_RS10320 PF17760 UvrA interaction domain SH_RS10320 PF17755 UvrA DNA-binding domain SH_RS10325 PF02151 UvrB/uvrC motif SH_RS10325 PF00271 Helicase conserved C-terminal domain SH_RS10325 PF17757 UvrB interaction domain SH_RS10325 PF12344 Ultra-violet resistance protein B SH_RS10325 PF04851 Type III restriction enzyme, res subunit SH_RS10345 PF01476 LysM domain SH_RS10345 PF05257 CHAP domain SH_RS10350 PF03462 PCRF domain SH_RS10350 PF00472 RF-1 domain SH_RS10355 PF01043 SecA preprotein cross-linking domain SH_RS10355 PF07517 SecA DEAD-like domain SH_RS10355 PF02810 SEC-C motif SH_RS10355 PF07516 SecA Wing and Scaffold domain SH_RS10360 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SH_RS10360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH_RS10370 PF04851 Type III restriction enzyme, res subunit SH_RS10370 PF00271 Helicase conserved C-terminal domain SH_RS10375 PF02645 Uncharacterised protein, DegV family COG1307 SH_RS10380 PF01205 Uncharacterized protein family UPF0029 SH_RS10380 PF09186 Domain of unknown function (DUF1949) SH_RS10385 PF00953 Glycosyl transferase family 4 SH_RS10390 PF00990 Diguanylate cyclase, GGDEF domain SH_RS10405 PF01546 Peptidase family M20/M25/M40 SH_RS10405 PF07687 Peptidase dimerisation domain SH_RS10410 PF02595 Glycerate kinase family SH_RS10430 PF01565 FAD binding domain SH_RS10430 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH_RS10445 PF01497 Periplasmic binding protein SH_RS10450 PF00005 ABC transporter SH_RS10455 PF01032 FecCD transport family SH_RS10460 PF01032 FecCD transport family SH_RS10465 PF00268 Ribonucleotide reductase, small chain SH_RS10470 PF08343 Ribonucleotide reductase N-terminal SH_RS10470 PF00317 Ribonucleotide reductase, all-alpha domain SH_RS10470 PF02867 Ribonucleotide reductase, barrel domain SH_RS10475 PF07972 NrdI Flavodoxin like SH_RS10485 PF14489 QueF-like protein SH_RS10490 PF00854 POT family SH_RS10495 PF00781 Diacylglycerol kinase catalytic domain SH_RS10500 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) SH_RS10505 PF00155 Aminotransferase class I and II SH_RS10510 PF00854 POT family SH_RS10515 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS10520 PF00005 ABC transporter SH_RS10520 PF00571 CBS domain SH_RS10525 PF09382 RQC domain SH_RS10525 PF16124 RecQ zinc-binding SH_RS10525 PF00270 DEAD/DEAH box helicase SH_RS10525 PF00570 HRDC domain SH_RS10525 PF00271 Helicase conserved C-terminal domain SH_RS10530 PF00005 ABC transporter SH_RS10530 PF16326 ABC transporter C-terminal domain SH_RS10530 PF12848 ABC transporter SH_RS10535 PF02535 ZIP Zinc transporter SH_RS10550 PF00884 Sulfatase SH_RS10555 PF02626 Carboxyltransferase domain, subdomain A and B SH_RS10560 PF02682 Carboxyltransferase domain, subdomain C and D SH_RS10575 PF00425 chorismate binding enzyme SH_RS10575 PF04715 Anthranilate synthase component I, N terminal region SH_RS10580 PF00591 Glycosyl transferase family, a/b domain SH_RS10580 PF02885 Glycosyl transferase family, helical bundle domain SH_RS10580 PF00117 Glutamine amidotransferase class-I SH_RS10585 PF06508 Queuosine biosynthesis protein QueC SH_RS10590 PF01242 6-pyruvoyl tetrahydropterin synthase SH_RS10595 PF04055 Radical SAM superfamily SH_RS10605 PF00535 Glycosyl transferase family 2 SH_RS10610 PF13683 Integrase core domain SH_RS10610 PF01610 Transposase SH_RS10615 PF00248 Aldo/keto reductase family SH_RS10620 PF00571 CBS domain SH_RS10620 PF03471 Transporter associated domain SH_RS10620 PF01595 Cyclin M transmembrane N-terminal domain SH_RS10625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH_RS10625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH_RS10630 PF00294 pfkB family carbohydrate kinase SH_RS10635 PF08220 DeoR-like helix-turn-helix domain SH_RS10635 PF00455 DeoR C terminal sensor domain SH_RS10640 PF04073 Aminoacyl-tRNA editing domain SH_RS10650 PF07690 Major Facilitator Superfamily SH_RS10670 PF00875 DNA photolyase SH_RS10670 PF03441 FAD binding domain of DNA photolyase SH_RS10675 PF00939 Sodium:sulfate symporter transmembrane region SH_RS10685 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH_RS10685 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH_RS10690 PF01047 MarR family SH_RS10695 PF00664 ABC transporter transmembrane region SH_RS10695 PF00005 ABC transporter SH_RS10700 PF00664 ABC transporter transmembrane region SH_RS10700 PF00005 ABC transporter SH_RS10705 PF02673 Bacitracin resistance protein BacA SH_RS10715 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH_RS10720 PF03641 Possible lysine decarboxylase SH_RS10725 PF13302 Acetyltransferase (GNAT) domain SH_RS10740 PF00583 Acetyltransferase (GNAT) family SH_RS10750 PF04306 Protein of unknown function (DUF456) SH_RS10755 PF07690 Major Facilitator Superfamily SH_RS10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS10760 PF03466 LysR substrate binding domain SH_RS10770 PF01717 Cobalamin-independent synthase, Catalytic domain SH_RS10780 PF01709 Transcriptional regulator SH_RS10790 PF12833 Helix-turn-helix domain SH_RS10800 PF01476 LysM domain SH_RS10800 PF05257 CHAP domain SH_RS10805 PF01384 Phosphate transporter family SH_RS10810 PF01865 Protein of unknown function DUF47 SH_RS10815 PF02687 FtsX-like permease family SH_RS10820 PF00005 ABC transporter SH_RS10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS10830 PF00072 Response regulator receiver domain SH_RS10830 PF00486 Transcriptional regulatory protein, C terminal SH_RS10835 PF01370 NAD dependent epimerase/dehydratase family SH_RS10845 PF07859 alpha/beta hydrolase fold SH_RS10860 PF03610 PTS system fructose IIA component SH_RS10865 PF02734 DAK2 domain SH_RS10870 PF02733 Dak1 domain SH_RS10875 PF01032 FecCD transport family SH_RS10880 PF01032 FecCD transport family SH_RS10885 PF00005 ABC transporter SH_RS10890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SH_RS10890 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SH_RS10895 PF01773 Na+ dependent nucleoside transporter N-terminus SH_RS10895 PF07662 Na+ dependent nucleoside transporter C-terminus SH_RS10900 PF00535 Glycosyl transferase family 2 SH_RS10900 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SH_RS10910 PF00664 ABC transporter transmembrane region SH_RS10910 PF00005 ABC transporter SH_RS10915 PF00768 D-alanyl-D-alanine carboxypeptidase SH_RS10915 PF07943 Penicillin-binding protein 5, C-terminal domain SH_RS10920 PF01467 Cytidylyltransferase-like SH_RS10925 PF00535 Glycosyl transferase family 2 SH_RS10930 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SH_RS10935 PF01061 ABC-2 type transporter SH_RS10940 PF00005 ABC transporter SH_RS10945 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH_RS10955 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH_RS10955 PF18357 Diphteria toxin repressor SH3 domain SH_RS10955 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH_RS10960 PF00999 Sodium/hydrogen exchanger family SH_RS10965 PF07687 Peptidase dimerisation domain SH_RS10965 PF01546 Peptidase family M20/M25/M40 SH_RS10975 PF00872 Transposase, Mutator family SH_RS10985 PF03334 Na+/H+ antiporter subunit SH_RS10990 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SH_RS10995 PF01899 Na+/H+ ion antiporter subunit SH_RS11000 PF00361 Proton-conducting membrane transporter SH_RS11005 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH_RS11010 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SH_RS11015 PF00361 Proton-conducting membrane transporter SH_RS11015 PF13244 Domain of unknown function (DUF4040) SH_RS11015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH_RS11020 PF00589 Phage integrase family SH_RS11020 PF02899 Phage integrase, N-terminal SAM-like domain SH_RS11050 PF13683 Integrase core domain SH_RS11050 PF01610 Transposase SH_RS11055 PF00561 alpha/beta hydrolase fold SH_RS11075 PF13419 Haloacid dehalogenase-like hydrolase SH_RS11080 PF01032 FecCD transport family SH_RS11085 PF01497 Periplasmic binding protein SH_RS11100 PF10576 Iron-sulfur binding domain of endonuclease III SH_RS11100 PF00633 Helix-hairpin-helix motif SH_RS11100 PF00730 HhH-GPD superfamily base excision DNA repair protein SH_RS11105 PF03485 Arginyl tRNA synthetase N terminal domain SH_RS11105 PF05746 DALR anticodon binding domain SH_RS11105 PF00750 tRNA synthetases class I (R) SH_RS11135 PF00005 ABC transporter SH_RS11140 PF00005 ABC transporter SH_RS11145 PF01636 Phosphotransferase enzyme family SH_RS11155 PF00440 Bacterial regulatory proteins, tetR family SH_RS11155 PF13977 BetI-type transcriptional repressor, C-terminal SH_RS11160 PF00239 Resolvase, N terminal domain SH_RS11160 PF02796 Helix-turn-helix domain of resolvase SH_RS11165 PF00239 Resolvase, N terminal domain SH_RS11165 PF02796 Helix-turn-helix domain of resolvase SH_RS11180 PF01381 Helix-turn-helix SH_RS11215 PF01022 Bacterial regulatory protein, arsR family SH_RS11220 PF13610 DDE domain SH_RS11225 PF08741 YwhD family SH_RS11230 PF01966 HD domain SH_RS11240 PF03358 NADPH-dependent FMN reductase SH_RS11245 PF00248 Aldo/keto reductase family SH_RS11255 PF01510 N-acetylmuramoyl-L-alanine amidase SH_RS11255 PF05257 CHAP domain SH_RS11255 PF08460 Bacterial SH3 domain SH_RS11275 PF13457 GW (Gly-Tryp) dipeptide domain SH_RS11275 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH_RS11300 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain SH_RS11300 PF12708 Pectate lyase superfamily protein SH_RS11370 PF03496 ADP-ribosyltransferase exoenzyme SH_RS11370 PF04233 Phage Mu protein F like protein SH_RS11380 PF17288 Terminase RNAseH like domain SH_RS11380 PF04466 Phage terminase large subunit SH_RS11425 PF00692 dUTPase SH_RS11480 PF01695 IstB-like ATP binding protein SH_RS11560 PF02796 Helix-turn-helix domain of resolvase SH_RS11560 PF00239 Resolvase, N terminal domain SH_RS11565 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS11565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH_RS11570 PF00313 'Cold-shock' DNA-binding domain SH_RS11575 PF07293 Protein of unknown function (DUF1450) SH_RS11580 PF00288 GHMP kinases N terminal domain SH_RS11580 PF08544 GHMP kinases C terminal SH_RS11590 PF00288 GHMP kinases N terminal domain SH_RS11590 PF08544 GHMP kinases C terminal SH_RS11595 PF03099 Biotin/lipoate A/B protein ligase family SH_RS11600 PF01515 Phosphate acetyl/butaryl transferase SH_RS11605 PF06778 Chlorite dismutase SH_RS11610 PF06738 Putative threonine/serine exporter SH_RS11625 PF04241 Protein of unknown function (DUF423) SH_RS11635 PF03167 Uracil DNA glycosylase superfamily SH_RS11640 PF08543 Phosphomethylpyrimidine kinase SH_RS11645 PF17412 Family of unknown function SH_RS11650 PF07690 Major Facilitator Superfamily SH_RS11665 PF02803 Thiolase, C-terminal domain SH_RS11665 PF00108 Thiolase, N-terminal domain SH_RS11670 PF00501 AMP-binding enzyme SH_RS11670 PF13193 AMP-binding enzyme C-terminal domain SH_RS11675 PF01380 SIS domain SH_RS11680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH_RS11690 PF02585 GlcNAc-PI de-N-acetylase SH_RS11695 PF02649 Type I GTP cyclohydrolase folE2 SH_RS11700 PF02875 Mur ligase family, glutamate ligase domain SH_RS11700 PF01225 Mur ligase family, catalytic domain SH_RS11700 PF08245 Mur ligase middle domain SH_RS11710 PF00746 LPXTG cell wall anchor motif SH_RS11710 PF17041 E domain SH_RS11710 PF07501 G5 domain SH_RS11710 PF17041 E domain SH_RS11710 PF07501 G5 domain SH_RS11710 PF04650 YSIRK type signal peptide SH_RS11710 PF00746 LPXTG cell wall anchor motif SH_RS11710 PF04650 YSIRK type signal peptide SH_RS11725 PF04650 YSIRK type signal peptide SH_RS11725 PF07501 G5 domain SH_RS11725 PF00746 LPXTG cell wall anchor motif SH_RS11725 PF17041 E domain SH_RS11730 PF03358 NADPH-dependent FMN reductase SH_RS11740 PF14437 MafB19-like deaminase SH_RS11745 PF01712 Deoxynucleoside kinase SH_RS11750 PF01712 Deoxynucleoside kinase SH_RS11755 PF13419 Haloacid dehalogenase-like hydrolase SH_RS11765 PF12728 Helix-turn-helix domain SH_RS11765 PF02661 Fic/DOC family SH_RS11775 PF00583 Acetyltransferase (GNAT) family SH_RS11800 PF01063 Amino-transferase class IV SH_RS11805 PF01370 NAD dependent epimerase/dehydratase family SH_RS11810 PF02872 5'-nucleotidase, C-terminal domain SH_RS11810 PF00149 Calcineurin-like phosphoesterase SH_RS11815 PF02423 Ornithine cyclodeaminase/mu-crystallin family SH_RS11820 PF13344 Haloacid dehalogenase-like hydrolase SH_RS11820 PF00293 NUDIX domain SH_RS11830 PF00155 Aminotransferase class I and II SH_RS11835 PF07687 Peptidase dimerisation domain SH_RS11835 PF01546 Peptidase family M20/M25/M40 SH_RS11840 PF00009 Elongation factor Tu GTP binding domain SH_RS11840 PF03143 Elongation factor Tu C-terminal domain SH_RS11840 PF03144 Elongation factor Tu domain 2 SH_RS11845 PF00009 Elongation factor Tu GTP binding domain SH_RS11845 PF03764 Elongation factor G, domain IV SH_RS11845 PF14492 Elongation Factor G, domain II SH_RS11845 PF00679 Elongation factor G C-terminus SH_RS11845 PF03144 Elongation factor Tu domain 2 SH_RS11850 PF00177 Ribosomal protein S7p/S5e SH_RS11855 PF00164 Ribosomal protein S12/S23 SH_RS11860 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SH_RS11865 PF04983 RNA polymerase Rpb1, domain 3 SH_RS11865 PF04997 RNA polymerase Rpb1, domain 1 SH_RS11865 PF05000 RNA polymerase Rpb1, domain 4 SH_RS11865 PF00623 RNA polymerase Rpb1, domain 2 SH_RS11865 PF04998 RNA polymerase Rpb1, domain 5 SH_RS11870 PF10385 RNA polymerase beta subunit external 1 domain SH_RS11870 PF04563 RNA polymerase beta subunit SH_RS11870 PF00562 RNA polymerase Rpb2, domain 6 SH_RS11870 PF04560 RNA polymerase Rpb2, domain 7 SH_RS11870 PF04561 RNA polymerase Rpb2, domain 2 SH_RS11870 PF04565 RNA polymerase Rpb2, domain 3 SH_RS11875 PF05175 Methyltransferase small domain SH_RS11880 PF00542 Ribosomal protein L7/L12 C-terminal domain SH_RS11880 PF16320 Ribosomal protein L7/L12 dimerisation domain SH_RS11885 PF00466 Ribosomal protein L10 SH_RS11895 PF00687 Ribosomal protein L1p/L10e family SH_RS11900 PF00298 Ribosomal protein L11, RNA binding domain SH_RS11900 PF03946 Ribosomal protein L11, N-terminal domain SH_RS11905 PF02357 Transcription termination factor nusG SH_RS11910 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH_RS11915 PF00471 Ribosomal protein L33 SH_RS11925 PF05991 YacP-like NYN domain SH_RS11930 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH_RS11930 PF00588 SpoU rRNA Methylase family SH_RS11935 PF00636 Ribonuclease III domain SH_RS11940 PF09190 DALR domain SH_RS11940 PF01406 tRNA synthetases class I (C) catalytic domain SH_RS11945 PF00132 Bacterial transferase hexapeptide (six repeats) SH_RS11950 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH_RS11960 PF18073 Rubredoxin metal binding domain SH_RS11965 PF00004 ATPase family associated with various cellular activities (AAA) SH_RS11965 PF07724 AAA domain (Cdc48 subfamily) SH_RS11965 PF17871 AAA lid domain SH_RS11965 PF02861 Clp amino terminal domain, pathogenicity island component SH_RS11965 PF10431 C-terminal, D2-small domain, of ClpB protein SH_RS11970 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain SH_RS11975 PF02151 UvrB/uvrC motif SH_RS11980 PF05848 CtsR N-terminal HTH domain SH_RS11980 PF17727 CtsR C-terminal dimerization domain SH_RS11985 PF07662 Na+ dependent nucleoside transporter C-terminus SH_RS11985 PF01773 Na+ dependent nucleoside transporter N-terminus SH_RS11990 PF01174 SNO glutamine amidotransferase family SH_RS11995 PF01680 SOR/SNZ family SH_RS12000 PF00392 Bacterial regulatory proteins, gntR family SH_RS12000 PF00155 Aminotransferase class I and II SH_RS12005 PF07681 DoxX SH_RS12075 PF01336 OB-fold nucleic acid binding domain SH_RS12075 PF00152 tRNA synthetases class II (D, K and N) SH_RS12080 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH_RS12085 PF02152 Dihydroneopterin aldolase SH_RS12090 PF00809 Pterin binding enzyme SH_RS12095 PF00291 Pyridoxal-phosphate dependent enzyme SH_RS12100 PF01430 Hsp33 protein SH_RS12105 PF17862 AAA+ lid domain SH_RS12105 PF01434 Peptidase family M41 SH_RS12105 PF06480 FtsH Extracellular SH_RS12105 PF00004 ATPase family associated with various cellular activities (AAA) SH_RS12110 PF00156 Phosphoribosyl transferase domain SH_RS12115 PF01171 PP-loop family SH_RS12115 PF11734 TilS substrate C-terminal domain SH_RS12120 PF00575 S1 RNA binding domain SH_RS12130 PF01479 S4 domain SH_RS12135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH_RS12135 PF03819 MazG nucleotide pyrophosphohydrolase domain SH_RS12140 PF01943 Polysaccharide biosynthesis protein SH_RS12140 PF14667 Polysaccharide biosynthesis C-terminal domain SH_RS12145 PF00270 DEAD/DEAH box helicase SH_RS12145 PF17757 UvrB interaction domain SH_RS12145 PF02559 CarD-like/TRCF domain SH_RS12145 PF03461 TRCF domain SH_RS12145 PF00271 Helicase conserved C-terminal domain SH_RS12150 PF01195 Peptidyl-tRNA hydrolase SH_RS12155 PF01386 Ribosomal L25p family SH_RS12155 PF14693 Ribosomal protein TL5, C-terminal domain SH_RS12160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH_RS12160 PF14572 Phosphoribosyl synthetase-associated domain SH_RS12165 PF00483 Nucleotidyl transferase SH_RS12165 PF00132 Bacterial transferase hexapeptide (six repeats) SH_RS12170 PF04026 SpoVG SH_RS12175 PF01042 Endoribonuclease L-PSP SH_RS12180 PF00156 Phosphoribosyl transferase domain SH_RS12180 PF09182 Bacterial purine repressor, N-terminal SH_RS12185 PF00288 GHMP kinases N terminal domain SH_RS12185 PF08544 GHMP kinases C terminal SH_RS12190 PF06257 Biofilm formation stimulator VEG SH_RS12195 PF00398 Ribosomal RNA adenine dimethylase SH_RS12200 PF13331 Domain of unknown function (DUF4093) SH_RS12200 PF01751 Toprim domain SH_RS12205 PF01026 TatD related DNase SH_RS12210 PF01588 Putative tRNA binding domain SH_RS12210 PF08264 Anticodon-binding domain of tRNA SH_RS12210 PF09334 tRNA synthetases class I (M) SH_RS12215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH_RS12220 PF01541 GIY-YIG catalytic domain SH_RS12225 PF05175 Methyltransferase small domain SH_RS12230 PF06156 Initiation control protein YabA SH_RS12235 PF04468 PSP1 C-terminal conserved region SH_RS12240 PF09115 DNA polymerase III, delta subunit, C terminal SH_RS12245 PF06153 Cyclic-di-AMP receptor SH_RS12250 PF02223 Thymidylate kinase SH_RS12255 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH_RS12255 PF01276 Orn/Lys/Arg decarboxylase, major domain SH_RS12260 PF13302 Acetyltransferase (GNAT) domain SH_RS12280 PF02132 RecR protein SH_RS12280 PF13662 Toprim domain SH_RS12285 PF02575 YbaB/EbfC DNA-binding family SH_RS12290 PF12169 DNA polymerase III subunits gamma and tau domain III SH_RS12300 PF00392 Bacterial regulatory proteins, gntR family SH_RS12300 PF07702 UTRA domain SH_RS12305 PF00128 Alpha amylase, catalytic domain SH_RS12305 PF16657 Maltogenic Amylase, C-terminal domain SH_RS12310 PF02378 Phosphotransferase system, EIIC SH_RS12310 PF00367 phosphotransferase system, EIIB SH_RS12320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS12320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH_RS12325 PF01645 Conserved region in glutamate synthase SH_RS12325 PF04898 Glutamate synthase central domain SH_RS12325 PF00310 Glutamine amidotransferases class-II SH_RS12325 PF01493 GXGXG motif SH_RS12330 PF03466 LysR substrate binding domain SH_RS12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH_RS12350 PF00293 NUDIX domain SH_RS12360 PF01476 LysM domain SH_RS12360 PF05257 CHAP domain SH_RS12365 PF01053 Cys/Met metabolism PLP-dependent enzyme SH_RS12370 PF00291 Pyridoxal-phosphate dependent enzyme SH_RS12385 PF00209 Sodium:neurotransmitter symporter family SH_RS12400 PF12146 Serine aminopeptidase, S33 SH_RS12410 PF01569 PAP2 superfamily SH_RS12420 PF10057 Uncharacterized conserved protein (DUF2294) SH_RS12425 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) SH_RS12430 PF00361 Proton-conducting membrane transporter SH_RS12430 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH_RS12435 PF06993 Protein of unknown function (DUF1304) SH_RS12445 PF13673 Acetyltransferase (GNAT) domain SH_RS12450 PF02386 Cation transport protein SH_RS12460 PF03592 Terminase small subunit SH_RS12460 PF10668 Phage terminase small subunit SH_RS12480 PF00872 Transposase, Mutator family SH_RS12490 PF00872 Transposase, Mutator family SH_RS12500 PF00872 Transposase, Mutator family SH_RS12505 PF00589 Phage integrase family SH_RS12505 PF14659 Phage integrase, N-terminal SAM-like domain SH_RS12510 PF00958 GMP synthase C terminal domain SH_RS12510 PF00117 Glutamine amidotransferase class-I SH_RS12515 PF00571 CBS domain SH_RS12515 PF00478 IMP dehydrogenase / GMP reductase domain SH_RS12520 PF00860 Permease family SH_RS12530 PF11181 Heat induced stress protein YflT SH_RS12545 PF00375 Sodium:dicarboxylate symporter family SH_RS12550 PF00881 Nitroreductase family SH_RS12560 PF00578 AhpC/TSA family SH_RS12565 PF13192 Thioredoxin domain SH_RS12565 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH_RS12575 PF00300 Histidine phosphatase superfamily (branch 1) SH_RS12580 PF01810 LysE type translocator SH_RS12590 PF01797 Transposase IS200 like SH_RS12630 PF13401 AAA domain SH_RS12635 PF09299 Mu transposase, C-terminal SH_RS12635 PF00665 Integrase core domain SH_RS12640 PF02796 Helix-turn-helix domain of resolvase SH_RS12640 PF00239 Resolvase, N terminal domain SH_RS12645 PF00440 Bacterial regulatory proteins, tetR family SH_RS12645 PF13977 BetI-type transcriptional repressor, C-terminal SH_RS12660 PF00005 ABC transporter SH_RS12705 PF01084 Ribosomal protein S18 SH_RS12710 PF00436 Single-strand binding protein family SH_RS12715 PF01250 Ribosomal protein S6 SH_RS12730 PF01926 50S ribosome-binding GTPase SH_RS12730 PF06071 Protein of unknown function (DUF933) SH_RS12735 PF06107 Bacterial protein of unknown function (DUF951) SH_RS12740 PF00924 Mechanosensitive ion channel SH_RS12745 PF17762 HTH domain found in ParB protein SH_RS12745 PF02195 ParB-like nuclease domain SH_RS12750 PF01053 Cys/Met metabolism PLP-dependent enzyme SH_RS12755 PF01053 Cys/Met metabolism PLP-dependent enzyme SH_RS12760 PF02219 Methylenetetrahydrofolate reductase SH_RS12760 PF02574 Homocysteine S-methyltransferase SH_RS12765 PF08267 Cobalamin-independent synthase, N-terminal domain SH_RS12765 PF01717 Cobalamin-independent synthase, Catalytic domain SH_RS12780 PF16326 ABC transporter C-terminal domain SH_RS12780 PF00005 ABC transporter SH_RS12780 PF12848 ABC transporter SH_RS12790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH_RS12795 PF00703 Glycosyl hydrolases family 2 SH_RS12795 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH_RS12795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH_RS12800 PF00106 short chain dehydrogenase SH_RS12805 PF03786 D-mannonate dehydratase (UxuA) SH_RS12810 PF02614 Glucuronate isomerase SH_RS12820 PF00294 pfkB family carbohydrate kinase SH_RS12830 PF12833 Helix-turn-helix domain SH_RS12840 PF00933 Glycosyl hydrolase family 3 N terminal domain SH_RS12845 PF00005 ABC transporter SH_RS12845 PF00571 CBS domain SH_RS12850 PF00528 Binding-protein-dependent transport system inner membrane component SH_RS12855 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH_RS12860 PF13302 Acetyltransferase (GNAT) domain SH_RS12875 PF10502 Signal peptidase, peptidase S26 SH_RS12885 PF00005 ABC transporter SH_RS12890 PF02687 FtsX-like permease family SH_RS12900 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SH_RS12900 PF17210 SdrD B-like domain SH_RS12900 PF17961 Bacterial Ig domain SH_RS12900 PF04650 YSIRK type signal peptide SH_RS12900 PF00746 LPXTG cell wall anchor motif SH_RS12925 PF02195 ParB-like nuclease domain SH_RS12925 PF17762 HTH domain found in ParB protein SH_RS12930 PF02527 rRNA small subunit methyltransferase G SH_RS12935 PF13932 GidA associated domain SH_RS12935 PF01134 Glucose inhibited division protein A SH_RS12940 PF01926 50S ribosome-binding GTPase SH_RS12940 PF10396 GTP-binding protein TrmE N-terminus SH_RS12940 PF12631 MnmE helical domain SH_RS12945 PF00825 Ribonuclease P SH_RS12950 PF00468 Ribosomal protein L34 SH_RS12960 PF00308 Bacterial dnaA protein SH_RS12960 PF11638 DnaA N-terminal domain SH_RS12960 PF08299 Bacterial dnaA protein helix-turn-helix SH_RS13005 PF00204 DNA gyrase B SH_RS13005 PF01751 Toprim domain SH_RS13005 PF00986 DNA gyrase B subunit, carboxyl terminus SH_RS13005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH_RS13025 PF05908 Poly-gamma-glutamate hydrolase SH_RS13060 PF04650 YSIRK type signal peptide SH_RS13060 PF00746 LPXTG cell wall anchor motif SH_RS13060 PF17210 SdrD B-like domain SH_RS13060 PF17961 Bacterial Ig domain SH_RS13060 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SH_RS13065 PF17210 SdrD B-like domain SH_RS13065 PF00746 LPXTG cell wall anchor motif SH_RS13065 PF04650 YSIRK type signal peptide SH_RS13065 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SH_RS13065 PF17961 Bacterial Ig domain