locus-tag	class	description
AL499_RS00010	PF00005	ABC transporter
AL499_RS00015	PF05975	Bacterial ABC transporter protein EcsB
AL499_RS00025	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AL499_RS00030	PF00762	Ferrochelatase
AL499_RS00035	PF01593	Flavin containing amine oxidoreductase
AL499_RS00040	PF06821	Serine hydrolase
AL499_RS00090	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS00090	PF00501	AMP-binding enzyme
AL499_RS00100	PF01809	Putative membrane protein insertion efficiency factor
AL499_RS00110	PF00326	Prolyl oligopeptidase family
AL499_RS00115	PF01293	Phosphoenolpyruvate carboxykinase
AL499_RS00120	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AL499_RS00120	PF02772	S-adenosylmethionine synthetase, central domain
AL499_RS00120	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AL499_RS00130	PF00248	Aldo/keto reductase family
AL499_RS00135	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
AL499_RS00140	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
AL499_RS00150	PF00923	Transaldolase/Fructose-6-phosphate aldolase
AL499_RS00165	PF04542	Sigma-70 region 2 
AL499_RS00165	PF00196	Bacterial regulatory proteins, luxR family
AL499_RS00175	PF13457	GW (Gly-Tryp) dipeptide domain
AL499_RS00175	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL499_RS00185	PF01872	RibD C-terminal domain
AL499_RS00185	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL499_RS00190	PF00677	Lumazine binding domain
AL499_RS00195	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL499_RS00195	PF00925	GTP cyclohydrolase II
AL499_RS00200	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AL499_RS00205	PF01619	Proline dehydrogenase
AL499_RS00210	PF12146	Serine aminopeptidase, S33
AL499_RS00215	PF01047	MarR family
AL499_RS00220	PF06962	Putative rRNA methylase
AL499_RS00225	PF16199	Radical_SAM C-terminal domain
AL499_RS00225	PF04055	Radical SAM superfamily
AL499_RS00230	PF07690	Major Facilitator Superfamily
AL499_RS00235	PF00133	tRNA synthetases class I (I, L, M and V)
AL499_RS00235	PF13603	Leucyl-tRNA synthetase, Domain 2
AL499_RS00235	PF09334	tRNA synthetases class I (M)
AL499_RS00235	PF08264	Anticodon-binding domain of tRNA
AL499_RS00250	PF01943	Polysaccharide biosynthesis protein
AL499_RS00250	PF14667	Polysaccharide biosynthesis C-terminal domain
AL499_RS00255	PF00849	RNA pseudouridylate synthase
AL499_RS00255	PF01479	S4 domain
AL499_RS00265	PF01546	Peptidase family M20/M25/M40
AL499_RS00270	PF01063	Amino-transferase class IV
AL499_RS00275	PF01636	Phosphotransferase enzyme family
AL499_RS00280	PF02390	Putative methyltransferase 
AL499_RS00285	PF00753	Metallo-beta-lactamase superfamily
AL499_RS00290	PF03413	Peptidase propeptide and YPEB domain
AL499_RS00295	PF05343	M42 glutamyl aminopeptidase
AL499_RS00300	PF00085	Thioredoxin
AL499_RS00305	PF07285	Protein of unknown function (DUF1444)
AL499_RS00310	PF14794	Domain of unknown function (DUF4479)
AL499_RS00310	PF01588	Putative tRNA binding domain
AL499_RS00315	PF17854	FtsK alpha domain
AL499_RS00315	PF09397	Ftsk gamma domain
AL499_RS00315	PF01580	FtsK/SpoIIIE family
AL499_RS00320	PF01225	Mur ligase family, catalytic domain
AL499_RS00320	PF08245	Mur ligase middle domain
AL499_RS00320	PF02875	Mur ligase family, glutamate ligase domain
AL499_RS00325	PF06103	Bacterial protein of unknown function (DUF948)
AL499_RS00335	PF01817	Chorismate mutase type II
AL499_RS00335	PF00793	DAHP synthetase I family
AL499_RS00340	PF00356	Bacterial regulatory proteins, lacI family
AL499_RS00355	PF00850	Histone deacetylase domain
AL499_RS00360	PF00583	Acetyltransferase (GNAT) family
AL499_RS00365	PF00501	AMP-binding enzyme
AL499_RS00365	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS00370	PF01268	Formate--tetrahydrofolate ligase
AL499_RS00375	PF00905	Penicillin binding protein transpeptidase domain
AL499_RS00375	PF00912	Transglycosylase
AL499_RS00380	PF01479	S4 domain
AL499_RS00380	PF00579	tRNA synthetases class I (W and Y)
AL499_RS00390	PF13180	PDZ domain
AL499_RS00395	PF01553	Acyltransferase
AL499_RS00400	PF00367	phosphotransferase system, EIIB
AL499_RS00400	PF02378	Phosphotransferase system, EIIC 
AL499_RS00410	PF01842	ACT domain
AL499_RS00410	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS00410	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS00415	PF00266	Aminotransferase class-V
AL499_RS00420	PF02566	OsmC-like protein
AL499_RS00425	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL499_RS00430	PF01479	S4 domain
AL499_RS00430	PF00163	Ribosomal protein S4/S9 N-terminal domain
AL499_RS00435	PF13185	GAF domain
AL499_RS00440	PF06160	Septation ring formation regulator, EzrA 
AL499_RS00445	PF00266	Aminotransferase class-V
AL499_RS00450	PF02926	THUMP domain
AL499_RS00450	PF02568	Thiamine biosynthesis protein (ThiI)
AL499_RS00455	PF01925	Sulfite exporter TauE/SafE
AL499_RS00460	PF08534	Redoxin
AL499_RS00465	PF02384	N-6 DNA Methylase
AL499_RS00470	PF00871	Acetokinase family
AL499_RS00475	PF00582	Universal stress protein family
AL499_RS00480	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL499_RS00480	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL499_RS00485	PF00557	Metallopeptidase family M24
AL499_RS00485	PF01321	Creatinase/Prolidase N-terminal domain
AL499_RS00500	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS00500	PF00571	CBS domain
AL499_RS00500	PF03061	Thioesterase superfamily
AL499_RS00500	PF07085	DRTGG domain
AL499_RS00505	PF01368	DHH family
AL499_RS00505	PF02272	DHHA1 domain
AL499_RS00510	PF07733	Bacterial DNA polymerase III alpha NTPase domain
AL499_RS00510	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
AL499_RS00510	PF14579	Helix-hairpin-helix motif
AL499_RS00510	PF01336	OB-fold nucleic acid binding domain
AL499_RS00510	PF02811	PHP domain
AL499_RS00515	PF03949	Malic enzyme, NAD binding domain
AL499_RS00515	PF00390	Malic enzyme, N-terminal domain
AL499_RS00520	PF01039	Carboxyl transferase domain
AL499_RS00520	PF17848	Acetyl-coA carboxylase zinc finger domain
AL499_RS00525	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AL499_RS00530	PF00365	Phosphofructokinase
AL499_RS00535	PF02887	Pyruvate kinase, alpha/beta domain
AL499_RS00535	PF00391	PEP-utilising enzyme, mobile domain
AL499_RS00535	PF00224	Pyruvate kinase, barrel domain
AL499_RS00540	PF01797	Transposase IS200 like
AL499_RS00545	PF00324	Amino acid permease
AL499_RS00550	PF00285	Citrate synthase, C-terminal domain
AL499_RS00555	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL499_RS00560	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS00560	PF00072	Response regulator receiver domain
AL499_RS00565	PF16736	Single Cache-like 
AL499_RS00565	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS00565	PF00989	PAS fold
AL499_RS00565	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS00570	PF00476	DNA polymerase family A
AL499_RS00570	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL499_RS00570	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL499_RS00575	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AL499_RS00575	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL499_RS00575	PF06827	Zinc finger found in FPG and IleRS
AL499_RS00580	PF01121	Dephospho-CoA kinase
AL499_RS00585	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL499_RS00585	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL499_RS00590	PF06968	Biotin and Thiamin Synthesis associated domain
AL499_RS00590	PF04055	Radical SAM superfamily
AL499_RS00595	PF03477	ATP cone domain
AL499_RS00600	PF07261	Replication initiation and membrane attachment
AL499_RS00605	PF01695	IstB-like ATP binding protein
AL499_RS00605	PF07319	Primosomal protein DnaI N-terminus
AL499_RS00610	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL499_RS00610	PF02824	TGS domain
AL499_RS00610	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL499_RS00610	PF03129	Anticodon binding domain
AL499_RS00615	PF00324	Amino acid permease
AL499_RS00620	PF05198	Translation initiation factor IF-3, N-terminal domain
AL499_RS00620	PF00707	Translation initiation factor IF-3, C-terminal domain
AL499_RS00625	PF01632	Ribosomal protein L35
AL499_RS00630	PF00453	Ribosomal protein L20
AL499_RS00645	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL499_RS00645	PF05698	Bacterial trigger factor protein (TF) C-terminus
AL499_RS00645	PF05697	Bacterial trigger factor protein (TF)
AL499_RS00650	PF06689	ClpX C4-type zinc finger
AL499_RS00650	PF07724	AAA domain (Cdc48 subfamily)
AL499_RS00650	PF10431	C-terminal, D2-small domain, of ClpB protein 
AL499_RS00655	PF01926	50S ribosome-binding GTPase
AL499_RS00660	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AL499_RS00660	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AL499_RS00660	PF01488	Shikimate / quinate 5-dehydrogenase
AL499_RS00665	PF01578	Cytochrome C assembly protein
AL499_RS00670	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AL499_RS00670	PF03900	Porphobilinogen deaminase, C-terminal domain
AL499_RS00680	PF00490	Delta-aminolevulinic acid dehydratase
AL499_RS00685	PF00202	Aminotransferase class-III
AL499_RS00695	PF03352	Methyladenine glycosylase
AL499_RS00700	PF08264	Anticodon-binding domain of tRNA
AL499_RS00700	PF10458	Valyl tRNA synthetase tRNA binding arm
AL499_RS00700	PF00133	tRNA synthetases class I (I, L, M and V)
AL499_RS00705	PF08245	Mur ligase middle domain
AL499_RS00705	PF02875	Mur ligase family, glutamate ligase domain
AL499_RS00715	PF04002	RadC-like JAB domain
AL499_RS00725	PF04085	rod shape-determining protein MreC
AL499_RS00735	PF00829	Ribosomal prokaryotic L21 protein
AL499_RS00740	PF04327	Cysteine protease Prp
AL499_RS00745	PF01016	Ribosomal L27 protein
AL499_RS00750	PF01018	GTP1/OBG
AL499_RS00750	PF09269	Domain of unknown function (DUF1967)
AL499_RS00750	PF01926	50S ribosome-binding GTPase
AL499_RS00760	PF01330	RuvA N terminal domain
AL499_RS00760	PF07499	RuvA, C-terminal domain
AL499_RS00765	PF05491	RuvB C-terminal winged helix domain
AL499_RS00765	PF05496	Holliday junction DNA helicase RuvB P-loop domain
AL499_RS00765	PF17864	RuvB AAA lid domain
AL499_RS00770	PF02547	Queuosine biosynthesis protein
AL499_RS00775	PF01702	Queuine tRNA-ribosyltransferase
AL499_RS00780	PF02699	Preprotein translocase subunit
AL499_RS00785	PF02355	Protein export membrane protein
AL499_RS00785	PF07549	SecD/SecF GG Motif
AL499_RS00790	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
AL499_RS00790	PF17768	RecJ OB domain
AL499_RS00790	PF01368	DHH family
AL499_RS00790	PF02272	DHHA1 domain
AL499_RS00795	PF00156	Phosphoribosyl transferase domain
AL499_RS00800	PF13291	ACT domain
AL499_RS00800	PF04607	Region found in RelA / SpoT proteins
AL499_RS00800	PF02824	TGS domain
AL499_RS00805	PF02580	D-Tyr-tRNA(Tyr) deacylase
AL499_RS00810	PF08239	Bacterial SH3 domain
AL499_RS00810	PF01520	N-acetylmuramoyl-L-alanine amidase
AL499_RS00815	PF13393	Histidyl-tRNA synthetase
AL499_RS00815	PF03129	Anticodon binding domain
AL499_RS00820	PF01336	OB-fold nucleic acid binding domain
AL499_RS00820	PF00152	tRNA synthetases class II (D, K and N) 
AL499_RS00820	PF02938	GAD domain
AL499_RS00830	PF00899	ThiF family
AL499_RS00835	PF05496	Holliday junction DNA helicase RuvB P-loop domain
AL499_RS00835	PF12002	MgsA AAA+ ATPase C terminal
AL499_RS00835	PF16193	AAA C-terminal domain
AL499_RS00840	PF02082	Transcriptional regulator
AL499_RS00845	PF00296	Luciferase-like monooxygenase
AL499_RS00850	PF00266	Aminotransferase class-V
AL499_RS00865	PF14490	Helix-hairpin-helix containing domain
AL499_RS00865	PF13538	UvrD-like helicase C-terminal domain
AL499_RS00865	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
AL499_RS00870	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL499_RS00870	PF01411	tRNA synthetases class II (A)
AL499_RS00870	PF02272	DHHA1 domain
AL499_RS00875	PF06135	IreB regulatory phosphoprotein
AL499_RS00880	PF03652	Holliday junction resolvase
AL499_RS00885	PF06949	Protein of unknown function (DUF1292)
AL499_RS00890	PF01596	O-methyltransferase
AL499_RS00895	PF01136	Peptidase family U32
AL499_RS00900	PF16325	Peptidase family U32 C-terminal domain
AL499_RS00900	PF01136	Peptidase family U32
AL499_RS00905	PF00485	Phosphoribulokinase / Uridine kinase family
AL499_RS00910	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL499_RS00910	PF03449	Transcription elongation factor, N-terminal
AL499_RS00915	PF02682	Carboxyltransferase domain, subdomain C and D
AL499_RS00920	PF02626	Carboxyltransferase domain, subdomain A and B 
AL499_RS00925	PF00364	Biotin-requiring enzyme
AL499_RS00930	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL499_RS00930	PF02785	Biotin carboxylase C-terminal domain
AL499_RS00930	PF00289	Biotin carboxylase, N-terminal domain
AL499_RS00935	PF03746	LamB/YcsF family
AL499_RS00940	PF01566	Natural resistance-associated macrophage protein
AL499_RS00945	PF01048	Phosphorylase superfamily
AL499_RS00955	PF01926	50S ribosome-binding GTPase
AL499_RS00960	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
AL499_RS00960	PF08501	Shikimate dehydrogenase substrate binding domain
AL499_RS00960	PF01488	Shikimate / quinate 5-dehydrogenase
AL499_RS00965	PF01985	CRS1 / YhbY (CRM) domain
AL499_RS00970	PF01467	Cytidylyltransferase-like
AL499_RS00975	PF01966	HD domain
AL499_RS00985	PF13649	Methyltransferase domain
AL499_RS00990	PF10531	SLBB domain
AL499_RS00995	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL499_RS01000	PF03772	Competence protein
AL499_RS01000	PF13567	Domain of unknown function (DUF4131)
AL499_RS01000	PF00753	Metallo-beta-lactamase superfamily
AL499_RS01005	PF06144	DNA polymerase III, delta subunit
AL499_RS01010	PF01649	Ribosomal protein S20
AL499_RS01015	PF06421	GTP-binding protein LepA C-terminus
AL499_RS01015	PF03144	Elongation factor Tu domain 2
AL499_RS01015	PF00009	Elongation factor Tu GTP binding domain
AL499_RS01015	PF14492	Elongation Factor G, domain II
AL499_RS01015	PF00679	Elongation factor G C-terminus
AL499_RS01020	PF04055	Radical SAM superfamily
AL499_RS01020	PF06969	HemN C-terminal domain
AL499_RS01025	PF01628	HrcA protein C terminal domain
AL499_RS01030	PF01025	GrpE
AL499_RS01035	PF00012	Hsp70 protein
AL499_RS01040	PF00684	DnaJ central domain
AL499_RS01040	PF00226	DnaJ domain
AL499_RS01040	PF01556	DnaJ C terminal domain
AL499_RS01050	PF04452	RNA methyltransferase
AL499_RS01055	PF01938	TRAM domain
AL499_RS01055	PF04055	Radical SAM superfamily
AL499_RS01055	PF00919	Uncharacterized protein family UPF0004
AL499_RS01060	PF01165	Ribosomal protein S21
AL499_RS01065	PF01957	NfeD-like C-terminal, partner-binding
AL499_RS01065	PF01972	Serine dehydrogenase proteinase
AL499_RS01070	PF12127	SigmaW regulon antibacterial
AL499_RS01080	PF02562	PhoH-like protein
AL499_RS01085	PF02130	Uncharacterized protein family UPF0054
AL499_RS01090	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL499_RS01095	PF01926	50S ribosome-binding GTPase
AL499_RS01095	PF07650	KH domain
AL499_RS01100	PF02565	Recombination protein O C terminal
AL499_RS01100	PF11967	Recombination protein O N terminal
AL499_RS01105	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL499_RS01105	PF03129	Anticodon binding domain
AL499_RS01110	PF00571	CBS domain
AL499_RS01110	PF08279	HTH domain
AL499_RS01115	PF03618	Kinase/pyrophosphorylase
AL499_RS01120	PF00772	DnaB-like helicase N terminal domain
AL499_RS01120	PF01807	CHC2 zinc finger
AL499_RS01120	PF08275	DNA primase catalytic core, N-terminal domain
AL499_RS01125	PF04539	Sigma-70 region 3
AL499_RS01125	PF04545	Sigma-70, region 4
AL499_RS01125	PF04542	Sigma-70 region 2 
AL499_RS01125	PF00140	Sigma-70 factor, region 1.2
AL499_RS01125	PF03979	Sigma-70 factor, region 1.1
AL499_RS01130	PF04816	tRNA (adenine(22)-N(1))-methyltransferase
AL499_RS01135	PF01784	NIF3 (NGG1p interacting factor 3)
AL499_RS01140	PF00271	Helicase conserved C-terminal domain
AL499_RS01140	PF00270	DEAD/DEAH box helicase
AL499_RS01145	PF01261	Xylose isomerase-like TIM barrel
AL499_RS01150	PF00005	ABC transporter
AL499_RS01155	PF00950	ABC 3 transport family
AL499_RS01160	PF01475	Ferric uptake regulator family
AL499_RS01165	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL499_RS01165	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL499_RS01170	PF00905	Penicillin binding protein transpeptidase domain
AL499_RS01170	PF03717	Penicillin-binding Protein dimerisation domain
AL499_RS01175	PF00471	Ribosomal protein L33
AL499_RS01180	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AL499_RS01185	PF01694	Rhomboid family
AL499_RS01190	PF06014	Bacterial protein of unknown function (DUF910)
AL499_RS01195	PF00480	ROK family
AL499_RS01200	PF01910	Thiamine-binding protein
AL499_RS01205	PF00753	Metallo-beta-lactamase superfamily
AL499_RS01210	PF00437	Type II/IV secretion system protein
AL499_RS01215	PF00482	Type II secretion system (T2SS), protein F
AL499_RS01220	PF07963	Prokaryotic N-terminal methylation motif
AL499_RS01245	PF01202	Shikimate kinase
AL499_RS01250	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL499_RS01250	PF01571	Aminomethyltransferase folate-binding domain
AL499_RS01255	PF02347	Glycine cleavage system P-protein
AL499_RS01260	PF00266	Aminotransferase class-V
AL499_RS01265	PF00581	Rhodanese-like domain
AL499_RS01270	PF03099	Biotin/lipoate A/B protein ligase family
AL499_RS01285	PF01321	Creatinase/Prolidase N-terminal domain
AL499_RS01285	PF00557	Metallopeptidase family M24
AL499_RS01290	PF08207	Elongation factor P (EF-P) KOW-like domain
AL499_RS01290	PF01132	Elongation factor P (EF-P) OB domain
AL499_RS01290	PF09285	Elongation factor P, C-terminal
AL499_RS01295	PF00364	Biotin-requiring enzyme
AL499_RS01300	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL499_RS01300	PF02785	Biotin carboxylase C-terminal domain
AL499_RS01300	PF00289	Biotin carboxylase, N-terminal domain
AL499_RS01305	PF03780	Asp23 family, cell envelope-related function
AL499_RS01310	PF01029	NusB family
AL499_RS01315	PF02601	Exonuclease VII, large subunit
AL499_RS01315	PF13742	OB-fold nucleic acid binding domain
AL499_RS01320	PF02609	Exonuclease VII small subunit
AL499_RS01325	PF00348	Polyprenyl synthetase
AL499_RS01330	PF02863	Arginine repressor, C-terminal domain
AL499_RS01330	PF01316	Arginine repressor, DNA binding domain
AL499_RS01335	PF13476	AAA domain
AL499_RS01340	PF01515	Phosphate acetyl/butaryl transferase
AL499_RS01345	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS01345	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS01350	PF00676	Dehydrogenase E1 component
AL499_RS01355	PF02779	Transketolase, pyrimidine binding domain
AL499_RS01355	PF02780	Transketolase, C-terminal domain
AL499_RS01360	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL499_RS01360	PF00364	Biotin-requiring enzyme
AL499_RS01360	PF02817	e3 binding domain
AL499_RS01365	PF06491	Disulphide isomerase
AL499_RS01370	PF06081	Aromatic acid exporter family member 1
AL499_RS01370	PF11728	Putative aromatic acid exporter C-terminal domain
AL499_RS01375	PF01797	Transposase IS200 like
AL499_RS01380	PF01546	Peptidase family M20/M25/M40
AL499_RS01380	PF07687	Peptidase dimerisation domain
AL499_RS01385	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AL499_RS01385	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL499_RS01390	PF00356	Bacterial regulatory proteins, lacI family
AL499_RS01395	PF16657	Maltogenic Amylase, C-terminal domain
AL499_RS01395	PF00128	Alpha amylase, catalytic domain
AL499_RS01405	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AL499_RS01405	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AL499_RS01410	PF12706	Beta-lactamase superfamily domain
AL499_RS01415	PF03807	NADP oxidoreductase coenzyme F420-dependent
AL499_RS01415	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AL499_RS01420	PF00106	short chain dehydrogenase
AL499_RS01430	PF00248	Aldo/keto reductase family
AL499_RS01435	PF00293	NUDIX domain
AL499_RS01440	PF01475	Ferric uptake regulator family
AL499_RS01445	PF00589	Phage integrase family
AL499_RS01445	PF02899	Phage integrase, N-terminal SAM-like domain
AL499_RS01455	PF02616	Segregation and condensation protein ScpA
AL499_RS01460	PF04079	Segregation and condensation complex subunit ScpB
AL499_RS01465	PF01479	S4 domain
AL499_RS01465	PF00849	RNA pseudouridylate synthase
AL499_RS01470	PF00072	Response regulator receiver domain
AL499_RS01470	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS01475	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS01475	PF18698	Histidine kinase sensor domain
AL499_RS01475	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS01475	PF00672	HAMP domain
AL499_RS01480	PF12822	ECF transporter, substrate-specific component
AL499_RS01495	PF00271	Helicase conserved C-terminal domain
AL499_RS01495	PF00270	DEAD/DEAH box helicase
AL499_RS01500	PF01476	LysM domain
AL499_RS01515	PF17763	Glutaminase/Asparaginase C-terminal domain
AL499_RS01515	PF00710	Asparaginase, N-terminal
AL499_RS01520	PF02224	Cytidylate kinase
AL499_RS01525	PF00575	S1 RNA binding domain
AL499_RS01530	PF01926	50S ribosome-binding GTPase
AL499_RS01530	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AL499_RS01535	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AL499_RS01535	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AL499_RS01540	PF00216	Bacterial DNA-binding protein
AL499_RS01550	PF01209	ubiE/COQ5 methyltransferase family
AL499_RS01555	PF00348	Polyprenyl synthetase
AL499_RS01560	PF00334	Nucleoside diphosphate kinase
AL499_RS01565	PF01264	Chorismate synthase
AL499_RS01570	PF01761	3-dehydroquinate synthase
AL499_RS01575	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL499_RS01585	PF08858	IDEAL domain
AL499_RS01585	PF08864	UPF0302 domain
AL499_RS01595	PF04298	Putative neutral zinc metallopeptidase
AL499_RS01600	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL499_RS01605	PF00534	Glycosyl transferases group 1
AL499_RS01605	PF13439	Glycosyltransferase Family 4
AL499_RS01610	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL499_RS01610	PF01743	Poly A polymerase head domain
AL499_RS01610	PF13735	tRNA nucleotidyltransferase domain 2 putative
AL499_RS01615	PF02237	Biotin protein ligase C terminal domain
AL499_RS01615	PF08279	HTH domain
AL499_RS01615	PF03099	Biotin/lipoate A/B protein ligase family
AL499_RS01620	PF00929	Exonuclease
AL499_RS01620	PF13307	Helicase C-terminal domain
AL499_RS01620	PF04851	Type III restriction enzyme, res subunit
AL499_RS01625	PF00152	tRNA synthetases class II (D, K and N) 
AL499_RS01625	PF01336	OB-fold nucleic acid binding domain
AL499_RS01630	PF07261	Replication initiation and membrane attachment
AL499_RS01635	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL499_RS01635	PF00633	Helix-hairpin-helix motif
AL499_RS01635	PF10576	Iron-sulfur binding domain of endonuclease III
AL499_RS01645	PF00905	Penicillin binding protein transpeptidase domain
AL499_RS01645	PF00912	Transglycosylase
AL499_RS01650	PF03838	Recombination protein U
AL499_RS01660	PF06908	YspA SLOG family
AL499_RS01665	PF05103	DivIVA protein
AL499_RS01675	PF02926	THUMP domain
AL499_RS01675	PF01170	Putative RNA methylase family UPF0020
AL499_RS01685	PF00350	Dynamin family
AL499_RS01690	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL499_RS01690	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL499_RS01695	PF00425	chorismate binding enzyme
AL499_RS01695	PF04715	Anthranilate synthase component I, N terminal region
AL499_RS01700	PF00117	Glutamine amidotransferase class-I
AL499_RS01705	PF00591	Glycosyl transferase family, a/b domain
AL499_RS01710	PF00218	Indole-3-glycerol phosphate synthase
AL499_RS01715	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AL499_RS01720	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS01725	PF00290	Tryptophan synthase alpha chain
AL499_RS01730	PF02388	FemAB family
AL499_RS01735	PF02388	FemAB family
AL499_RS01745	PF01497	Periplasmic binding protein
AL499_RS01755	PF01432	Peptidase family M3
AL499_RS01755	PF08439	Oligopeptidase F
AL499_RS01760	PF01895	PhoU domain
AL499_RS01765	PF00005	ABC transporter
AL499_RS01770	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS01775	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS01780	PF12849	PBP superfamily domain
AL499_RS01785	PF17783	CvfB-like winged helix domain
AL499_RS01785	PF13509	S1 domain
AL499_RS01790	PF12848	ABC transporter
AL499_RS01790	PF00005	ABC transporter
AL499_RS01795	PF01842	ACT domain
AL499_RS01795	PF00696	Amino acid kinase family
AL499_RS01795	PF13840	ACT domain 
AL499_RS01800	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL499_RS01800	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL499_RS01805	PF00701	Dihydrodipicolinate synthetase family
AL499_RS01810	PF01113	Dihydrodipicolinate reductase, N-terminus
AL499_RS01810	PF05173	Dihydrodipicolinate reductase, C-terminus
AL499_RS01815	PF14602	Hexapeptide repeat of succinyl-transferase
AL499_RS01815	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
AL499_RS01815	PF00132	Bacterial transferase hexapeptide (six repeats)
AL499_RS01820	PF01546	Peptidase family M20/M25/M40
AL499_RS01825	PF01168	Alanine racemase, N-terminal domain
AL499_RS01825	PF00842	Alanine racemase, C-terminal domain
AL499_RS01830	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL499_RS01830	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL499_RS01845	PF00313	'Cold-shock' DNA-binding domain
AL499_RS01855	PF00708	Acylphosphatase
AL499_RS01865	PF05816	Toxic anion resistance protein (TelA)
AL499_RS01870	PF05525	Branched-chain amino acid transport protein
AL499_RS01875	PF00092	von Willebrand factor type A domain
AL499_RS01880	PF08406	CbbQ/NirQ/NorQ C-terminal 
AL499_RS01880	PF07728	AAA domain (dynein-related subfamily)
AL499_RS01895	PF00364	Biotin-requiring enzyme
AL499_RS01895	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL499_RS01895	PF02817	e3 binding domain
AL499_RS01900	PF00676	Dehydrogenase E1 component
AL499_RS01900	PF16870	2-oxoglutarate dehydrogenase C-terminal
AL499_RS01900	PF02779	Transketolase, pyrimidine binding domain
AL499_RS01905	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS01905	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS01905	PF18719	ArlS sensor domain
AL499_RS01910	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS01910	PF00072	Response regulator receiver domain
AL499_RS01915	PF01569	PAP2 superfamily
AL499_RS01920	PF04101	Glycosyltransferase family 28 C-terminal domain
AL499_RS01920	PF03033	Glycosyltransferase family 28 N-terminal domain
AL499_RS01930	PF17820	PDZ domain
AL499_RS01930	PF03572	Peptidase family S41
AL499_RS01930	PF01471	Putative peptidoglycan binding domain
AL499_RS01935	PF06855	YozE SAM-like fold
AL499_RS01940	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL499_RS01945	PF01641	SelR domain
AL499_RS01950	PF01625	Peptide methionine sulfoxide reductase
AL499_RS01955	PF02645	Uncharacterised protein, DegV family COG1307
AL499_RS01960	PF00186	Dihydrofolate reductase
AL499_RS01965	PF00303	Thymidylate synthase
AL499_RS01970	PF06491	Disulphide isomerase
AL499_RS01975	PF13769	Virulence factor
AL499_RS01975	PF08712	Scaffold protein Nfu/NifU N terminal
AL499_RS01980	PF02592	Putative vitamin uptake transporter
AL499_RS01985	PF13456	Reverse transcriptase-like
AL499_RS01990	PF05343	M42 glutamyl aminopeptidase
AL499_RS02000	PF03611	PTS system sugar-specific permease component
AL499_RS02005	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL499_RS02010	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS02015	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL499_RS02020	PF01261	Xylose isomerase-like TIM barrel
AL499_RS02025	PF00596	Class II Aldolase and Adducin N-terminal domain
AL499_RS02040	PF02153	Prephenate dehydrogenase
AL499_RS02040	PF01842	ACT domain
AL499_RS02045	PF00817	impB/mucB/samB family
AL499_RS02045	PF11799	impB/mucB/samB family C-terminal domain
AL499_RS02045	PF11798	IMS family HHH motif
AL499_RS02050	PF01361	Tautomerase enzyme
AL499_RS02055	PF03816	Cell envelope-related transcriptional attenuator domain
AL499_RS02060	PF01625	Peptide methionine sulfoxide reductase
AL499_RS02070	PF17418	Sporulation delaying protein SdpA
AL499_RS02080	PF09924	Uncharacterised conserved protein (DUF2156)
AL499_RS02080	PF03706	Lysylphosphatidylglycerol synthase TM region
AL499_RS02085	PF01594	AI-2E family transporter
AL499_RS02090	PF01235	Sodium:alanine symporter family
AL499_RS02095	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL499_RS02095	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL499_RS02100	PF01751	Toprim domain
AL499_RS02100	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS02100	PF00986	DNA gyrase B subunit, carboxyl terminus
AL499_RS02100	PF00204	DNA gyrase B
AL499_RS02105	PF02660	Glycerol-3-phosphate acyltransferase
AL499_RS02120	PF00330	Aconitase family (aconitate hydratase)
AL499_RS02120	PF00694	Aconitase C-terminal domain
AL499_RS02125	PF02028	BCCT, betaine/carnitine/choline family transporter
AL499_RS02130	PF01741	Large-conductance mechanosensitive channel, MscL
AL499_RS02135	PF13476	AAA domain
AL499_RS02140	PF00149	Calcineurin-like phosphoesterase
AL499_RS02140	PF12320	Type 5 capsule protein repressor C-terminal domain
AL499_RS02145	PF07301	Protein of unknown function (DUF1453)
AL499_RS02150	PF03672	Uncharacterised protein family (UPF0154)
AL499_RS02155	PF00456	Transketolase, thiamine diphosphate binding domain
AL499_RS02155	PF02780	Transketolase, C-terminal domain
AL499_RS02155	PF02779	Transketolase, pyrimidine binding domain
AL499_RS02160	PF05979	Bacterial protein of unknown function (DUF896)
AL499_RS02170	PF01726	LexA DNA binding domain
AL499_RS02170	PF00717	Peptidase S24-like
AL499_RS02175	PF00188	Cysteine-rich secretory protein family
AL499_RS02175	PF14504	CAP-associated N-terminal
AL499_RS02180	PF00478	IMP dehydrogenase / GMP reductase domain
AL499_RS02185	PF00253	Ribosomal protein S14p/S29e
AL499_RS02190	PF00471	Ribosomal protein L33
AL499_RS02195	PF06628	Catalase-related immune-responsive
AL499_RS02195	PF00199	Catalase
AL499_RS02200	PF00324	Amino acid permease
AL499_RS02215	PF00288	GHMP kinases N terminal domain
AL499_RS02215	PF08544	GHMP kinases C terminal 
AL499_RS02220	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS02225	PF01842	ACT domain
AL499_RS02225	PF00742	Homoserine dehydrogenase
AL499_RS02225	PF03447	Homoserine dehydrogenase, NAD binding domain
AL499_RS02245	PF00565	Staphylococcal nuclease homologue
AL499_RS02260	PF00196	Bacterial regulatory proteins, luxR family
AL499_RS02260	PF00072	Response regulator receiver domain
AL499_RS02265	PF07730	Histidine kinase
AL499_RS02265	PF13185	GAF domain
AL499_RS02275	PF00005	ABC transporter
AL499_RS02280	PF13091	PLD-like domain
AL499_RS02280	PF13396	Phospholipase_D-nuclease N-terminal
AL499_RS02290	PF00120	Glutamine synthetase, catalytic domain
AL499_RS02290	PF03951	Glutamine synthetase, beta-Grasp domain
AL499_RS02295	PF13411	MerR HTH family regulatory protein
AL499_RS02300	PF06838	Methionine gamma-lyase 
AL499_RS02305	PF01926	50S ribosome-binding GTPase
AL499_RS02305	PF16360	GTP-binding GTPase Middle Region
AL499_RS02305	PF13167	GTP-binding GTPase N-terminal
AL499_RS02310	PF00255	Glutathione peroxidase
AL499_RS02315	PF17209	Hfq protein
AL499_RS02325	PF00561	alpha/beta hydrolase fold
AL499_RS02330	PF16901	C-terminal domain of alpha-glycerophosphate oxidase
AL499_RS02330	PF01266	FAD dependent oxidoreductase
AL499_RS02335	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL499_RS02335	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL499_RS02340	PF00230	Major intrinsic protein
AL499_RS02350	PF08676	MutL C terminal dimerisation domain
AL499_RS02350	PF01119	DNA mismatch repair protein, C-terminal domain
AL499_RS02355	PF05188	MutS domain II
AL499_RS02355	PF00488	MutS domain V
AL499_RS02355	PF01624	MutS domain I
AL499_RS02355	PF05192	MutS domain III
AL499_RS02355	PF05190	MutS family domain IV
AL499_RS02370	PF04055	Radical SAM superfamily
AL499_RS02370	PF00919	Uncharacterized protein family UPF0004
AL499_RS02370	PF01938	TRAM domain
AL499_RS02380	PF05908	Poly-gamma-glutamate hydrolase
AL499_RS02385	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS02390	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
AL499_RS02390	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AL499_RS02390	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AL499_RS02395	PF13277	YmdB-like protein
AL499_RS02405	PF12072	Domain of unknown function (DUF3552)
AL499_RS02405	PF00013	KH domain
AL499_RS02405	PF01966	HD domain
AL499_RS02410	PF00154	recA bacterial DNA recombination protein
AL499_RS02415	PF00994	Probable molybdopterin binding domain
AL499_RS02415	PF18146	Damage-inducible protein CinA KH domain
AL499_RS02415	PF02464	Competence-damaged protein
AL499_RS02420	PF01066	CDP-alcohol phosphatidyltransferase
AL499_RS02430	PF11868	Protein of unknown function (DUF3388)
AL499_RS02440	PF00675	Insulinase (Peptidase family M16)
AL499_RS02440	PF05193	Peptidase M16 inactive domain
AL499_RS02445	PF05193	Peptidase M16 inactive domain
AL499_RS02450	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS02450	PF07702	UTRA domain
AL499_RS02455	PF17854	FtsK alpha domain
AL499_RS02455	PF01580	FtsK/SpoIIIE family
AL499_RS02455	PF09397	Ftsk gamma domain
AL499_RS02460	PF00753	Metallo-beta-lactamase superfamily
AL499_RS02460	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
AL499_RS02460	PF17770	Ribonuclease J C-terminal domain
AL499_RS02465	PF00013	KH domain
AL499_RS02465	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AL499_RS02465	PF01138	3' exoribonuclease family, domain 1
AL499_RS02465	PF03725	3' exoribonuclease family, domain 2
AL499_RS02465	PF00575	S1 RNA binding domain
AL499_RS02470	PF00312	Ribosomal protein S15
AL499_RS02475	PF01687	Riboflavin kinase
AL499_RS02475	PF06574	FAD synthetase
AL499_RS02480	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AL499_RS02480	PF16198	tRNA pseudouridylate synthase B C-terminal domain
AL499_RS02485	PF02033	Ribosome-binding factor A
AL499_RS02490	PF04760	Translation initiation factor IF-2, N-terminal region
AL499_RS02490	PF11987	Translation-initiation factor 2
AL499_RS02490	PF00009	Elongation factor Tu GTP binding domain
AL499_RS02495	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
AL499_RS02500	PF04296	Protein of unknown function (DUF448)
AL499_RS02505	PF13184	NusA-like KH domain
AL499_RS02505	PF00575	S1 RNA binding domain
AL499_RS02505	PF08529	NusA N-terminal domain
AL499_RS02510	PF02576	RimP N-terminal domain
AL499_RS02510	PF17384	RimP C-terminal SH3 domain
AL499_RS02515	PF00929	Exonuclease
AL499_RS02515	PF11490	DNA polymerase III polC-type N-terminus II
AL499_RS02515	PF14480	DNA polymerase III polC-type N-terminus I
AL499_RS02515	PF07733	Bacterial DNA polymerase III alpha NTPase domain
AL499_RS02515	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
AL499_RS02515	PF14579	Helix-hairpin-helix motif
AL499_RS02515	PF02811	PHP domain
AL499_RS02520	PF04073	Aminoacyl-tRNA editing domain
AL499_RS02520	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL499_RS02520	PF03129	Anticodon binding domain
AL499_RS02525	PF02163	Peptidase family M50
AL499_RS02525	PF13180	PDZ domain
AL499_RS02530	PF10425	C-terminus of bacterial fibrinogen-binding adhesin
AL499_RS02530	PF00746	LPXTG cell wall anchor motif
AL499_RS02530	PF17961	Bacterial Ig domain
AL499_RS02530	PF04650	YSIRK type signal peptide
AL499_RS02540	PF01255	Putative undecaprenyl diphosphate synthase
AL499_RS02545	PF01765	Ribosome recycling factor
AL499_RS02550	PF00696	Amino acid kinase family
AL499_RS02555	PF00889	Elongation factor TS
AL499_RS02560	PF00318	Ribosomal protein S2
AL499_RS02565	PF08222	CodY helix-turn-helix domain
AL499_RS02565	PF06018	CodY GAF-like domain
AL499_RS02570	PF10431	C-terminal, D2-small domain, of ClpB protein 
AL499_RS02570	PF07724	AAA domain (Cdc48 subfamily)
AL499_RS02575	PF00227	Proteasome subunit
AL499_RS02580	PF02899	Phage integrase, N-terminal SAM-like domain
AL499_RS02580	PF00589	Phage integrase family
AL499_RS02585	PF01134	Glucose inhibited division protein A
AL499_RS02590	PF01131	DNA topoisomerase
AL499_RS02590	PF01396	Topoisomerase DNA binding C4 zinc finger
AL499_RS02590	PF01751	Toprim domain
AL499_RS02595	PF02481	DNA recombination-mediator protein A
AL499_RS02600	PF02388	FemAB family
AL499_RS02605	PF02629	CoA binding domain
AL499_RS02605	PF00549	CoA-ligase
AL499_RS02610	PF00549	CoA-ligase
AL499_RS02610	PF08442	ATP-grasp domain
AL499_RS02615	PF01351	Ribonuclease HII
AL499_RS02620	PF01926	50S ribosome-binding GTPase
AL499_RS02625	PF09586	Bacterial membrane protein YfhO
AL499_RS02635	PF01245	Ribosomal protein L19
AL499_RS02640	PF01746	tRNA (Guanine-1)-methyltransferase
AL499_RS02645	PF01782	RimM N-terminal domain
AL499_RS02645	PF05239	PRC-barrel domain
AL499_RS02650	PF00886	Ribosomal protein S16
AL499_RS02665	PF00108	Thiolase, N-terminal domain
AL499_RS02665	PF02803	Thiolase, C-terminal domain
AL499_RS02670	PF00501	AMP-binding enzyme
AL499_RS02675	PF01797	Transposase IS200 like
AL499_RS02680	PF02978	Signal peptide binding domain
AL499_RS02680	PF00448	SRP54-type protein, GTPase domain
AL499_RS02680	PF02881	SRP54-type protein, helical bundle domain
AL499_RS02685	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
AL499_RS02690	PF02881	SRP54-type protein, helical bundle domain
AL499_RS02690	PF00448	SRP54-type protein, GTPase domain
AL499_RS02695	PF06470	SMC proteins Flexible Hinge Domain
AL499_RS02695	PF02463	RecF/RecN/SMC N terminal domain
AL499_RS02700	PF00035	Double-stranded RNA binding motif
AL499_RS02700	PF14622	Ribonuclease-III-like
AL499_RS02705	PF00550	Phosphopantetheine attachment site
AL499_RS02715	PF00698	Acyl transferase domain
AL499_RS02720	PF02504	Fatty acid synthesis protein
AL499_RS02725	PF01575	MaoC like domain
AL499_RS02730	PF17191	RecG wedge domain
AL499_RS02730	PF00271	Helicase conserved C-terminal domain
AL499_RS02730	PF00270	DEAD/DEAH box helicase
AL499_RS02735	PF02734	DAK2 domain
AL499_RS02735	PF13684	Dihydroxyacetone kinase family
AL499_RS02740	PF03780	Asp23 family, cell envelope-related function
AL499_RS02745	PF00830	Ribosomal L28 family
AL499_RS02755	PF00834	Ribulose-phosphate 3 epimerase family
AL499_RS02760	PF16745	RsgA N-terminal domain
AL499_RS02760	PF03193	RsgA GTPase
AL499_RS02765	PF03793	PASTA domain
AL499_RS02765	PF00069	Protein kinase domain
AL499_RS02775	PF04055	Radical SAM superfamily
AL499_RS02780	PF01029	NusB family
AL499_RS02780	PF01189	16S rRNA methyltransferase RsmB/F
AL499_RS02785	PF02911	Formyl transferase, C-terminal domain
AL499_RS02785	PF00551	Formyl transferase
AL499_RS02790	PF01327	Polypeptide deformylase
AL499_RS02795	PF17764	3′ DNA-binding domain (3′BD)
AL499_RS02795	PF00271	Helicase conserved C-terminal domain
AL499_RS02795	PF18074	Primosomal protein N C-terminal domain
AL499_RS02795	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
AL499_RS02795	PF04851	Type III restriction enzyme, res subunit
AL499_RS02800	PF02441	Flavoprotein
AL499_RS02800	PF04127	DNA / pantothenate metabolism flavoprotein
AL499_RS02805	PF01192	RNA polymerase Rpb6 
AL499_RS02810	PF00625	Guanylate kinase
AL499_RS02815	PF05670	NFACT protein RNA binding domain
AL499_RS02830	PF00156	Phosphoribosyl transferase domain
AL499_RS02835	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL499_RS02840	PF02142	MGS-like domain
AL499_RS02840	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL499_RS02840	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL499_RS02845	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL499_RS02845	PF00117	Glutamine amidotransferase class-I
AL499_RS02850	PF01979	Amidohydrolase family
AL499_RS02855	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL499_RS02855	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL499_RS02860	PF00860	Permease family
AL499_RS02865	PF00156	Phosphoribosyl transferase domain
AL499_RS02870	PF00849	RNA pseudouridylate synthase
AL499_RS02870	PF01479	S4 domain
AL499_RS02875	PF01252	Signal peptidase (SPase) II
AL499_RS02885	PF06827	Zinc finger found in FPG and IleRS
AL499_RS02885	PF08264	Anticodon-binding domain of tRNA
AL499_RS02885	PF00133	tRNA synthetases class I (I, L, M and V)
AL499_RS02890	PF05103	DivIVA protein
AL499_RS02895	PF17774	Putative RNA-binding domain in YlmH
AL499_RS02895	PF01479	S4 domain
AL499_RS02900	PF02325	YGGT family
AL499_RS02905	PF04472	Cell division protein SepF
AL499_RS02910	PF01168	Alanine racemase, N-terminal domain
AL499_RS02915	PF02578	Multi-copper polyphenol oxidoreductase laccase
AL499_RS02920	PF12327	FtsZ family, C-terminal domain
AL499_RS02920	PF00091	Tubulin/FtsZ family, GTPase domain
AL499_RS02925	PF02491	SHS2 domain inserted in FTSA
AL499_RS02930	PF03799	Cell division protein FtsQ
AL499_RS02930	PF08478	POTRA domain, FtsQ-type
AL499_RS02935	PF08245	Mur ligase middle domain
AL499_RS02935	PF02875	Mur ligase family, glutamate ligase domain
AL499_RS02940	PF00953	Glycosyl transferase family 4
AL499_RS02945	PF03793	PASTA domain
AL499_RS02945	PF03717	Penicillin-binding Protein dimerisation domain
AL499_RS02945	PF00905	Penicillin binding protein transpeptidase domain
AL499_RS02950	PF04977	Septum formation initiator
AL499_RS02955	PF01795	MraW methylase family
AL499_RS02960	PF02381	MraZ protein, putative antitoxin-like
AL499_RS02965	PF10079	Bacillithiol biosynthesis BshC 
AL499_RS02980	PF13419	Haloacid dehalogenase-like hydrolase
AL499_RS02990	PF01725	Ham1 family
AL499_RS02995	PF01177	Asp/Glu/Hydantoin racemase
AL499_RS03000	PF13183	4Fe-4S dicluster domain
AL499_RS03000	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL499_RS03005	PF00890	FAD binding domain
AL499_RS03005	PF02910	Fumarate reductase flavoprotein C-term
AL499_RS03010	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL499_RS03015	PF08459	UvrC Helix-hairpin-helix N-terminal
AL499_RS03015	PF02151	UvrB/uvrC motif
AL499_RS03015	PF01541	GIY-YIG catalytic domain
AL499_RS03020	PF00085	Thioredoxin
AL499_RS03025	PF01713	Smr domain
AL499_RS03025	PF00488	MutS domain V
AL499_RS03030	PF14791	DNA polymerase beta thumb 
AL499_RS03030	PF14716	Helix-hairpin-helix domain
AL499_RS03030	PF02811	PHP domain
AL499_RS03040	PF05164	Cell division protein ZapA
AL499_RS03045	PF01351	Ribonuclease HII
AL499_RS03045	PF11858	Domain of unknown function (DUF3378)
AL499_RS03055	PF01588	Putative tRNA binding domain
AL499_RS03055	PF03147	Ferredoxin-fold anticodon binding domain
AL499_RS03055	PF03484	tRNA synthetase B5 domain
AL499_RS03055	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
AL499_RS03055	PF03483	B3/4 domain
AL499_RS03060	PF01409	tRNA synthetases class II core domain (F)
AL499_RS03060	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AL499_RS03065	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL499_RS03065	PF00588	SpoU rRNA Methylase family
AL499_RS03070	PF01783	Ribosomal L32p protein family
AL499_RS03080	PF05636	HIGH Nucleotidyl Transferase
AL499_RS03085	PF01467	Cytidylyltransferase-like
AL499_RS03100	PF09902	Uncharacterized protein conserved in bacteria (DUF2129)
AL499_RS03105	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL499_RS03110	PF06133	Control of competence regulator ComK, YlbF/YmcA
AL499_RS03125	PF01040	UbiA prenyltransferase family
AL499_RS03130	PF02628	Cytochrome oxidase assembly protein
AL499_RS03135	PF02785	Biotin carboxylase C-terminal domain
AL499_RS03135	PF00289	Biotin carboxylase, N-terminal domain
AL499_RS03135	PF00364	Biotin-requiring enzyme
AL499_RS03135	PF02436	Conserved carboxylase domain
AL499_RS03135	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL499_RS03135	PF00682	HMGL-like
AL499_RS03140	PF01098	Cell cycle protein
AL499_RS03145	PF07408	Protein of unknown function (DUF1507)
AL499_RS03160	PF14492	Elongation Factor G, domain II
AL499_RS03160	PF00679	Elongation factor G C-terminus
AL499_RS03160	PF03144	Elongation factor Tu domain 2
AL499_RS03160	PF00009	Elongation factor Tu GTP binding domain
AL499_RS03170	PF00459	Inositol monophosphatase family
AL499_RS03175	PF06335	Protein of unknown function (DUF1054)
AL499_RS03180	PF01566	Natural resistance-associated macrophage protein
AL499_RS03195	PF13416	Bacterial extracellular solute-binding protein
AL499_RS03200	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS03205	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS03210	PF08402	TOBE domain
AL499_RS03210	PF00005	ABC transporter
AL499_RS03220	PF05256	Uncharacterised protein family (UPF0223)
AL499_RS03225	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS03225	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS03230	PF00364	Biotin-requiring enzyme
AL499_RS03230	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL499_RS03230	PF02817	e3 binding domain
AL499_RS03235	PF02779	Transketolase, pyrimidine binding domain
AL499_RS03235	PF02780	Transketolase, C-terminal domain
AL499_RS03240	PF00676	Dehydrogenase E1 component
AL499_RS03250	PF01327	Polypeptide deformylase
AL499_RS03255	PF07288	Protein of unknown function (DUF1447)
AL499_RS03260	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
AL499_RS03260	PF00753	Metallo-beta-lactamase superfamily
AL499_RS03260	PF17770	Ribonuclease J C-terminal domain
AL499_RS03270	PF02254	TrkA-N domain
AL499_RS03270	PF02080	TrkA-C domain
AL499_RS03285	PF05524	PEP-utilising enzyme, N-terminal
AL499_RS03285	PF00391	PEP-utilising enzyme, mobile domain
AL499_RS03285	PF02896	PEP-utilising enzyme, TIM barrel domain
AL499_RS03290	PF00381	PTS HPr component phosphorylation site
AL499_RS03300	PF10672	S-adenosylmethionine-dependent methyltransferase
AL499_RS03300	PF17785	PUA-like domain
AL499_RS03315	PF00005	ABC transporter
AL499_RS03320	PF02361	Cobalt transport protein
AL499_RS03325	PF02843	Phosphoribosylglycinamide synthetase, C domain
AL499_RS03325	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AL499_RS03325	PF02844	Phosphoribosylglycinamide synthetase, N domain
AL499_RS03330	PF01808	AICARFT/IMPCHase bienzyme
AL499_RS03330	PF02142	MGS-like domain
AL499_RS03335	PF00551	Formyl transferase
AL499_RS03340	PF00586	AIR synthase related protein, N-terminal domain
AL499_RS03340	PF02769	AIR synthase related protein, C-terminal domain
AL499_RS03345	PF13537	Glutamine amidotransferase domain
AL499_RS03345	PF00156	Phosphoribosyl transferase domain
AL499_RS03350	PF00586	AIR synthase related protein, N-terminal domain
AL499_RS03350	PF02769	AIR synthase related protein, C-terminal domain
AL499_RS03350	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
AL499_RS03360	PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
AL499_RS03365	PF01259	SAICAR synthetase
AL499_RS03370	PF02222	ATP-grasp domain
AL499_RS03370	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS03370	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
AL499_RS03375	PF00731	AIR carboxylase
AL499_RS03380	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AL499_RS03380	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AL499_RS03385	PF00175	Oxidoreductase NAD-binding domain 
AL499_RS03385	PF00970	Oxidoreductase FAD-binding domain
AL499_RS03385	PF00042	Globin
AL499_RS03395	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
AL499_RS03400	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL499_RS03405	PF00510	Cytochrome c oxidase subunit III
AL499_RS03410	PF03626	Prokaryotic Cytochrome C oxidase subunit IV 
AL499_RS03415	PF01156	Inosine-uridine preferring nucleoside hydrolase
AL499_RS03420	PF00144	Beta-lactamase
AL499_RS03425	PF03816	Cell envelope-related transcriptional attenuator domain
AL499_RS03430	PF10804	Protein of unknown function (DUF2538) 
AL499_RS03435	PF13673	Acetyltransferase (GNAT) domain
AL499_RS03440	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL499_RS03440	PF13457	GW (Gly-Tryp) dipeptide domain
AL499_RS03450	PF01757	Acyltransferase family
AL499_RS03455	PF00155	Aminotransferase class I and II
AL499_RS03460	PF00378	Enoyl-CoA hydratase/isomerase
AL499_RS03465	PF12697	Alpha/beta hydrolase family
AL499_RS03470	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL499_RS03470	PF16582	Middle domain of thiamine pyrophosphate
AL499_RS03470	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS03475	PF00425	chorismate binding enzyme
AL499_RS03480	PF01040	UbiA prenyltransferase family
AL499_RS03500	PF01610	Transposase
AL499_RS03500	PF13683	Integrase core domain
AL499_RS03550	PF03099	Biotin/lipoate A/B protein ligase family
AL499_RS03550	PF10437	Bacterial lipoate protein ligase C-terminus
AL499_RS03555	PF09953	Uncharacterized protein conserved in bacteria (DUF2187)
AL499_RS03565	PF00149	Calcineurin-like phosphoesterase
AL499_RS03565	PF02872	5'-nucleotidase, C-terminal domain
AL499_RS03570	PF02386	Cation transport protein
AL499_RS03575	PF13180	PDZ domain
AL499_RS03580	PF03741	Integral membrane protein TerC family
AL499_RS03585	PF00009	Elongation factor Tu GTP binding domain
AL499_RS03585	PF16658	Class II release factor RF3, C-terminal domain
AL499_RS03585	PF03144	Elongation factor Tu domain 2
AL499_RS03595	PF08245	Mur ligase middle domain
AL499_RS03595	PF02875	Mur ligase family, glutamate ligase domain
AL499_RS03595	PF01225	Mur ligase family, catalytic domain
AL499_RS03600	PF04101	Glycosyltransferase family 28 C-terminal domain
AL499_RS03600	PF06925	Monogalactosyldiacylglycerol (MGDG) synthase
AL499_RS03605	PF07690	Major Facilitator Superfamily
AL499_RS03615	PF13411	MerR HTH family regulatory protein
AL499_RS03620	PF00106	short chain dehydrogenase
AL499_RS03630	PF01594	AI-2E family transporter
AL499_RS03640	PF02254	TrkA-N domain
AL499_RS03640	PF00999	Sodium/hydrogen exchanger family
AL499_RS03640	PF02080	TrkA-C domain
AL499_RS03645	PF03448	MgtE intracellular N domain
AL499_RS03645	PF00571	CBS domain
AL499_RS03645	PF01769	Divalent cation transporter
AL499_RS03650	PF00849	RNA pseudouridylate synthase
AL499_RS03655	PF01513	ATP-NAD kinase
AL499_RS03660	PF04607	Region found in RelA / SpoT proteins
AL499_RS03675	PF01152	Bacterial-like globin
AL499_RS03685	PF01432	Peptidase family M3
AL499_RS03685	PF08439	Oligopeptidase F
AL499_RS03695	PF05389	Negative regulator of genetic competence (MecA)
AL499_RS03700	PF03960	ArsC family
AL499_RS03705	PF00579	tRNA synthetases class I (W and Y)
AL499_RS03710	PF13649	Methyltransferase domain
AL499_RS03715	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL499_RS03720	PF00005	ABC transporter
AL499_RS03720	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL499_RS03725	PF00005	ABC transporter
AL499_RS03725	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL499_RS03730	PF12911	N-terminal TM domain of oligopeptide transport permease C
AL499_RS03730	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS03735	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS03745	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL499_RS03745	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL499_RS03750	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL499_RS03750	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
AL499_RS03760	PF07724	AAA domain (Cdc48 subfamily)
AL499_RS03760	PF02861	Clp amino terminal domain, pathogenicity island component
AL499_RS03760	PF00004	ATPase family associated with various cellular activities (AAA)
AL499_RS03760	PF10431	C-terminal, D2-small domain, of ClpB protein 
AL499_RS03760	PF17871	AAA lid domain
AL499_RS03765	PF01883	Iron-sulfur cluster assembly protein
AL499_RS03775	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS03775	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS03780	PF07457	Protein of unknown function (DUF1516)
AL499_RS03785	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL499_RS03790	PF00580	UvrD/REP helicase N-terminal domain
AL499_RS03790	PF13361	UvrD-like helicase C-terminal domain
AL499_RS03790	PF12705	PD-(D/E)XK nuclease superfamily
AL499_RS03795	PF12705	PD-(D/E)XK nuclease superfamily
AL499_RS03795	PF13361	UvrD-like helicase C-terminal domain
AL499_RS03800	PF10502	Signal peptidase, peptidase S26 
AL499_RS03805	PF10502	Signal peptidase, peptidase S26 
AL499_RS03810	PF09335	SNARE associated Golgi protein
AL499_RS03815	PF00342	Phosphoglucose isomerase
AL499_RS03820	PF00764	Arginosuccinate synthase
AL499_RS03825	PF00206	Lyase
AL499_RS03825	PF14698	Argininosuccinate lyase C-terminal
AL499_RS03845	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AL499_RS03845	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL499_RS03850	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL499_RS03855	PF00575	S1 RNA binding domain
AL499_RS03860	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL499_RS03870	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL499_RS03870	PF00361	Proton-conducting membrane transporter
AL499_RS03870	PF13244	Domain of unknown function (DUF4040)
AL499_RS03875	PF04039	Domain related to MnhB subunit of Na+/H+ antiporter
AL499_RS03880	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AL499_RS03885	PF00361	Proton-conducting membrane transporter
AL499_RS03890	PF01899	Na+/H+ ion antiporter subunit
AL499_RS03895	PF04066	Multiple resistance and pH regulation protein F (MrpF / PhaF)
AL499_RS03900	PF03334	Na+/H+ antiporter subunit
AL499_RS03910	PF03061	Thioesterase superfamily
AL499_RS03915	PF03553	Na+/H+ antiporter family
AL499_RS03915	PF13726	Na+-H+ antiporter family
AL499_RS03920	PF00883	Cytosol aminopeptidase family, catalytic domain
AL499_RS03920	PF02789	Cytosol aminopeptidase family, N-terminal domain
AL499_RS03925	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS03935	PF00664	ABC transporter transmembrane region
AL499_RS03935	PF00005	ABC transporter
AL499_RS03940	PF08021	Siderophore-interacting FAD-binding domain
AL499_RS03940	PF00664	ABC transporter transmembrane region
AL499_RS03940	PF00005	ABC transporter
AL499_RS03940	PF04954	Siderophore-interacting protein
AL499_RS03945	PF00005	ABC transporter
AL499_RS03960	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS03960	PF00550	Phosphopantetheine attachment site
AL499_RS03960	PF00668	Condensation domain
AL499_RS03960	PF00501	AMP-binding enzyme
AL499_RS03960	PF00975	Thioesterase domain
AL499_RS03975	PF00501	AMP-binding enzyme
AL499_RS03975	PF00668	Condensation domain
AL499_RS03975	PF08242	Methyltransferase domain
AL499_RS03975	PF00550	Phosphopantetheine attachment site
AL499_RS03980	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS03980	PF00501	AMP-binding enzyme
AL499_RS03990	PF00975	Thioesterase domain
AL499_RS03995	PF01521	Iron-sulphur cluster biosynthesis
AL499_RS04000	PF07293	Protein of unknown function (DUF1450)
AL499_RS04005	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS04010	PF07315	Protein of unknown function (DUF1462)
AL499_RS04015	PF01106	NifU-like domain
AL499_RS04020	PF04914	DltD protein
AL499_RS04025	PF00550	Phosphopantetheine attachment site
AL499_RS04030	PF03062	MBOAT, membrane-bound O-acyltransferase family
AL499_RS04035	PF00501	AMP-binding enzyme
AL499_RS04035	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS04045	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS04045	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS04050	PF13344	Haloacid dehalogenase-like hydrolase
AL499_RS04055	PF01934	Protein of unknown function DUF86
AL499_RS04065	PF06265	Protein of unknown function (DUF1027)
AL499_RS04070	PF04055	Radical SAM superfamily
AL499_RS04070	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family
AL499_RS04075	PF02872	5'-nucleotidase, C-terminal domain
AL499_RS04080	PF01925	Sulfite exporter TauE/SafE
AL499_RS04085	PF01904	Protein of unknown function DUF72
AL499_RS04090	PF03060	Nitronate monooxygenase
AL499_RS04095	PF01595	Cyclin M transmembrane N-terminal domain
AL499_RS04095	PF03471	Transporter associated domain
AL499_RS04095	PF00571	CBS domain
AL499_RS04115	PF04634	Protein of unknown function, DUF600
AL499_RS04125	PF04634	Protein of unknown function, DUF600
AL499_RS04135	PF04634	Protein of unknown function, DUF600
AL499_RS04145	PF04634	Protein of unknown function, DUF600
AL499_RS04160	PF04634	Protein of unknown function, DUF600
AL499_RS04220	PF01580	FtsK/SpoIIIE family
AL499_RS04220	PF12538	DNA transporter 
AL499_RS04225	PF10140	WXG100 protein secretion system (Wss), protein YukC
AL499_RS04230	PF08817	WXG100 protein secretion system (Wss), protein YukD
AL499_RS04235	PF10661	WXG100 protein secretion system (Wss), protein EssA
AL499_RS04245	PF06013	Proteins of 100 residues with WXG
AL499_RS04250	PF01476	LysM domain
AL499_RS04250	PF05257	CHAP domain
AL499_RS04270	PF01458	Uncharacterized protein family (UPF0051)
AL499_RS04275	PF01592	NifU-like N terminal domain
AL499_RS04280	PF00266	Aminotransferase class-V
AL499_RS04285	PF01458	Uncharacterized protein family (UPF0051)
AL499_RS04290	PF00005	ABC transporter
AL499_RS04300	PF05532	CsbD-like
AL499_RS04310	PF03180	NLPA lipoprotein
AL499_RS04315	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS04320	PF00005	ABC transporter
AL499_RS04320	PF09383	NIL domain
AL499_RS04330	PF01751	Toprim domain
AL499_RS04335	PF01597	Glycine cleavage H-protein
AL499_RS04340	PF03960	ArsC family
AL499_RS04345	PF00085	Thioredoxin
AL499_RS04355	PF01487	Type I 3-dehydroquinase
AL499_RS04360	PF02566	OsmC-like protein
AL499_RS04370	PF00300	Histidine phosphatase superfamily (branch 1)
AL499_RS04395	PF05908	Poly-gamma-glutamate hydrolase
AL499_RS04410	PF07681	DoxX
AL499_RS04415	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL499_RS04425	PF03641	Possible lysine decarboxylase
AL499_RS04440	PF04507	Csa1 family
AL499_RS04460	PF04507	Csa1 family
AL499_RS04470	PF16916	Dimerisation domain of Zinc Transporter
AL499_RS04470	PF01545	Cation efflux family
AL499_RS04485	PF01047	MarR family
AL499_RS04505	PF01668	SmpB protein
AL499_RS04510	PF00575	S1 RNA binding domain
AL499_RS04510	PF17876	Cold shock domain
AL499_RS04510	PF08206	Ribonuclease B OB domain
AL499_RS04510	PF00773	RNB domain
AL499_RS04515	PF12146	Serine aminopeptidase, S33
AL499_RS04520	PF03840	Preprotein translocase SecG subunit
AL499_RS04530	PF03952	Enolase, N-terminal domain
AL499_RS04530	PF00113	Enolase, C-terminal TIM barrel domain
AL499_RS04535	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AL499_RS04535	PF01676	Metalloenzyme superfamily
AL499_RS04540	PF00121	Triosephosphate isomerase
AL499_RS04545	PF00162	Phosphoglycerate kinase
AL499_RS04550	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL499_RS04550	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL499_RS04555	PF04198	Putative sugar-binding domain
AL499_RS04565	PF01370	NAD dependent epimerase/dehydratase family
AL499_RS04565	PF08338	Domain of unknown function (DUF1731)
AL499_RS04570	PF00574	Clp protease
AL499_RS04580	PF10298	WhiA N-terminal LAGLIDADG-like domain
AL499_RS04580	PF14527	WhiA LAGLIDADG-like domain
AL499_RS04580	PF02650	WhiA C-terminal HTH domain
AL499_RS04585	PF01933	Uncharacterised protein family UPF0052
AL499_RS04590	PF03668	P-loop ATPase protein family
AL499_RS04595	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS04605	PF14602	Hexapeptide repeat of succinyl-transferase
AL499_RS04610	PF01790	Prolipoprotein diacylglyceryl transferase
AL499_RS04615	PF07475	HPr Serine kinase C-terminal domain
AL499_RS04615	PF02603	HPr Serine kinase N terminus
AL499_RS04620	PF00005	ABC transporter
AL499_RS04620	PF17760	UvrA interaction domain
AL499_RS04620	PF17755	UvrA DNA-binding domain
AL499_RS04625	PF17757	UvrB interaction domain
AL499_RS04625	PF12344	Ultra-violet resistance protein B
AL499_RS04625	PF04851	Type III restriction enzyme, res subunit
AL499_RS04625	PF02151	UvrB/uvrC motif
AL499_RS04625	PF00271	Helicase conserved C-terminal domain
AL499_RS04640	PF01476	LysM domain
AL499_RS04640	PF05257	CHAP domain
AL499_RS04645	PF03462	PCRF domain
AL499_RS04645	PF00472	RF-1 domain
AL499_RS04650	PF02810	SEC-C motif
AL499_RS04650	PF07517	SecA DEAD-like domain
AL499_RS04650	PF01043	SecA preprotein cross-linking domain
AL499_RS04650	PF07516	SecA Wing and Scaffold domain
AL499_RS04655	PF13457	GW (Gly-Tryp) dipeptide domain
AL499_RS04655	PF01510	N-acetylmuramoyl-L-alanine amidase
AL499_RS04660	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
AL499_RS04660	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL499_RS04670	PF00271	Helicase conserved C-terminal domain
AL499_RS04670	PF04851	Type III restriction enzyme, res subunit
AL499_RS04675	PF02645	Uncharacterised protein, DegV family COG1307
AL499_RS04680	PF01205	Uncharacterized protein family UPF0029
AL499_RS04680	PF09186	Domain of unknown function (DUF1949)
AL499_RS04685	PF00953	Glycosyl transferase family 4
AL499_RS04690	PF00990	Diguanylate cyclase, GGDEF domain
AL499_RS04705	PF01546	Peptidase family M20/M25/M40
AL499_RS04705	PF07687	Peptidase dimerisation domain
AL499_RS04715	PF02595	Glycerate kinase family
AL499_RS04735	PF01565	FAD binding domain 
AL499_RS04735	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AL499_RS04745	PF01497	Periplasmic binding protein
AL499_RS04750	PF00005	ABC transporter
AL499_RS04755	PF01032	FecCD transport family
AL499_RS04760	PF01032	FecCD transport family
AL499_RS04765	PF01497	Periplasmic binding protein
AL499_RS04770	PF00005	ABC transporter
AL499_RS04775	PF01032	FecCD transport family
AL499_RS04780	PF01032	FecCD transport family
AL499_RS04785	PF00268	Ribonucleotide reductase, small chain
AL499_RS04790	PF00317	Ribonucleotide reductase, all-alpha domain
AL499_RS04790	PF08343	Ribonucleotide reductase N-terminal
AL499_RS04790	PF02867	Ribonucleotide reductase, barrel domain
AL499_RS04795	PF07972	NrdI Flavodoxin like 
AL499_RS04805	PF14489	QueF-like protein
AL499_RS04810	PF00854	POT family
AL499_RS04815	PF00781	Diacylglycerol kinase catalytic domain
AL499_RS04820	PF06941	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
AL499_RS04825	PF00155	Aminotransferase class I and II
AL499_RS04830	PF00854	POT family
AL499_RS04835	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS04840	PF00005	ABC transporter
AL499_RS04840	PF00571	CBS domain
AL499_RS04845	PF00570	HRDC domain
AL499_RS04845	PF09382	RQC domain
AL499_RS04845	PF16124	RecQ zinc-binding
AL499_RS04845	PF00270	DEAD/DEAH box helicase
AL499_RS04845	PF00271	Helicase conserved C-terminal domain
AL499_RS04850	PF00005	ABC transporter
AL499_RS04850	PF12848	ABC transporter
AL499_RS04850	PF16326	ABC transporter C-terminal domain
AL499_RS04855	PF02535	ZIP Zinc transporter
AL499_RS04860	PF01797	Transposase IS200 like
AL499_RS04865	PF00884	Sulfatase
AL499_RS04875	PF02682	Carboxyltransferase domain, subdomain C and D
AL499_RS04885	PF04715	Anthranilate synthase component I, N terminal region
AL499_RS04885	PF00425	chorismate binding enzyme
AL499_RS04885	PF00117	Glutamine amidotransferase class-I
AL499_RS04890	PF00117	Glutamine amidotransferase class-I
AL499_RS04890	PF02885	Glycosyl transferase family, helical bundle domain
AL499_RS04890	PF00591	Glycosyl transferase family, a/b domain
AL499_RS04895	PF06508	Queuosine biosynthesis protein QueC
AL499_RS04900	PF01242	6-pyruvoyl tetrahydropterin synthase
AL499_RS04905	PF04055	Radical SAM superfamily
AL499_RS04915	PF00535	Glycosyl transferase family 2
AL499_RS04920	PF00248	Aldo/keto reductase family
AL499_RS04925	PF00571	CBS domain
AL499_RS04925	PF03471	Transporter associated domain
AL499_RS04925	PF01595	Cyclin M transmembrane N-terminal domain
AL499_RS04930	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS04930	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL499_RS04935	PF00294	pfkB family carbohydrate kinase
AL499_RS04940	PF08220	DeoR-like helix-turn-helix domain
AL499_RS04940	PF00455	DeoR C terminal sensor domain
AL499_RS04945	PF04073	Aminoacyl-tRNA editing domain
AL499_RS04955	PF07690	Major Facilitator Superfamily
AL499_RS04970	PF03441	FAD binding domain of DNA photolyase
AL499_RS04970	PF00875	DNA photolyase
AL499_RS04975	PF00939	Sodium:sulfate symporter transmembrane region
AL499_RS04980	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL499_RS04980	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL499_RS04990	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL499_RS04990	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL499_RS04995	PF01047	MarR family
AL499_RS05000	PF02673	Bacitracin resistance protein BacA
AL499_RS05010	PF02639	Uncharacterized BCR, YaiI/YqxD family COG1671
AL499_RS05015	PF03641	Possible lysine decarboxylase
AL499_RS05040	PF04306	Protein of unknown function (DUF456)
AL499_RS05045	PF07690	Major Facilitator Superfamily
AL499_RS05050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS05050	PF03466	LysR substrate binding domain
AL499_RS05070	PF01709	Transcriptional regulator
AL499_RS05090	PF05257	CHAP domain
AL499_RS05090	PF01476	LysM domain
AL499_RS05095	PF01384	Phosphate transporter family
AL499_RS05100	PF01865	Protein of unknown function DUF47
AL499_RS05105	PF02687	FtsX-like permease family
AL499_RS05110	PF00005	ABC transporter
AL499_RS05115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS05120	PF00072	Response regulator receiver domain
AL499_RS05120	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS05125	PF01370	NAD dependent epimerase/dehydratase family
AL499_RS05135	PF07859	alpha/beta hydrolase fold
AL499_RS05150	PF03610	PTS system fructose IIA component
AL499_RS05155	PF01032	FecCD transport family
AL499_RS05160	PF01032	FecCD transport family
AL499_RS05165	PF00005	ABC transporter
AL499_RS05170	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AL499_RS05170	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
AL499_RS05180	PF07662	Na+ dependent nucleoside transporter C-terminus
AL499_RS05180	PF01773	Na+ dependent nucleoside transporter N-terminus
AL499_RS05190	PF00535	Glycosyl transferase family 2
AL499_RS05190	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS05195	PF09318	Glycosyl transferase 1 domain A
AL499_RS05195	PF00534	Glycosyl transferases group 1
AL499_RS05200	PF00664	ABC transporter transmembrane region
AL499_RS05200	PF00005	ABC transporter
AL499_RS05205	PF07943	Penicillin-binding protein 5, C-terminal domain
AL499_RS05205	PF00768	D-alanyl-D-alanine carboxypeptidase
AL499_RS05210	PF01467	Cytidylyltransferase-like
AL499_RS05215	PF00535	Glycosyl transferase family 2
AL499_RS05220	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS05230	PF01061	ABC-2 type transporter
AL499_RS05235	PF00005	ABC transporter
AL499_RS05245	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS05245	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS05250	PF03808	Glycosyl transferase WecB/TagA/CpsF family
AL499_RS05260	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AL499_RS05260	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AL499_RS05260	PF18357	Diphteria toxin repressor SH3 domain
AL499_RS05265	PF00005	ABC transporter
AL499_RS05270	PF00950	ABC 3 transport family
AL499_RS05275	PF01297	Zinc-uptake complex component A periplasmic
AL499_RS05280	PF00999	Sodium/hydrogen exchanger family
AL499_RS05285	PF03334	Na+/H+ antiporter subunit
AL499_RS05290	PF04066	Multiple resistance and pH regulation protein F (MrpF / PhaF)
AL499_RS05295	PF01899	Na+/H+ ion antiporter subunit
AL499_RS05300	PF00361	Proton-conducting membrane transporter
AL499_RS05305	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AL499_RS05310	PF04039	Domain related to MnhB subunit of Na+/H+ antiporter
AL499_RS05315	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL499_RS05315	PF00361	Proton-conducting membrane transporter
AL499_RS05315	PF13244	Domain of unknown function (DUF4040)
AL499_RS05320	PF02899	Phage integrase, N-terminal SAM-like domain
AL499_RS05320	PF00589	Phage integrase family
AL499_RS05350	PF00561	alpha/beta hydrolase fold
AL499_RS05370	PF13419	Haloacid dehalogenase-like hydrolase
AL499_RS05375	PF01032	FecCD transport family
AL499_RS05380	PF01497	Periplasmic binding protein
AL499_RS05395	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL499_RS05395	PF00633	Helix-hairpin-helix motif
AL499_RS05395	PF10576	Iron-sulfur binding domain of endonuclease III
AL499_RS05400	PF03485	Arginyl tRNA synthetase N terminal domain
AL499_RS05400	PF05746	DALR anticodon binding domain
AL499_RS05400	PF00750	tRNA synthetases class I (R)
AL499_RS05420	PF00107	Zinc-binding dehydrogenase
AL499_RS05420	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS05425	PF08741	YwhD family
AL499_RS05430	PF01966	HD domain
AL499_RS05440	PF03358	NADPH-dependent FMN reductase
AL499_RS05445	PF00248	Aldo/keto reductase family
AL499_RS05455	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS05455	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS05460	PF07293	Protein of unknown function (DUF1450)
AL499_RS05465	PF00288	GHMP kinases N terminal domain
AL499_RS05465	PF08544	GHMP kinases C terminal 
AL499_RS05475	PF00288	GHMP kinases N terminal domain
AL499_RS05480	PF03099	Biotin/lipoate A/B protein ligase family
AL499_RS05485	PF01515	Phosphate acetyl/butaryl transferase
AL499_RS05490	PF06778	Chlorite dismutase
AL499_RS05515	PF13520	Amino acid permease
AL499_RS05520	PF04241	Protein of unknown function (DUF423)
AL499_RS05530	PF03167	Uracil DNA glycosylase superfamily
AL499_RS05535	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
AL499_RS05540	PF08543	Phosphomethylpyrimidine kinase
AL499_RS05545	PF01494	FAD binding domain
AL499_RS05550	PF04405	Domain of Unknown function (DUF542)  
AL499_RS05550	PF01814	Hemerythrin HHE cation binding domain
AL499_RS05555	PF07690	Major Facilitator Superfamily
AL499_RS05560	PF01380	SIS domain
AL499_RS05565	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL499_RS05575	PF02585	GlcNAc-PI de-N-acetylase
AL499_RS05580	PF02649	Type I GTP cyclohydrolase folE2
AL499_RS05585	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS05590	PF18674	TarS beta-glycosyltransferase C-terminal domain 1
AL499_RS05590	PF00535	Glycosyl transferase family 2
AL499_RS05600	PF17480	AlphaC  C-terminal
AL499_RS05600	PF08829	Alpha C protein N terminal
AL499_RS05600	PF04650	YSIRK type signal peptide
AL499_RS05600	PF00746	LPXTG cell wall anchor motif
AL499_RS05605	PF03358	NADPH-dependent FMN reductase
AL499_RS05615	PF14437	MafB19-like deaminase
AL499_RS05620	PF01712	Deoxynucleoside kinase
AL499_RS05625	PF01712	Deoxynucleoside kinase
AL499_RS05630	PF13419	Haloacid dehalogenase-like hydrolase
AL499_RS05635	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL499_RS05635	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL499_RS05640	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS05645	PF13520	Amino acid permease
AL499_RS05650	PF01063	Amino-transferase class IV
AL499_RS05655	PF01370	NAD dependent epimerase/dehydratase family
AL499_RS05660	PF01810	LysE type translocator
AL499_RS05665	PF00293	NUDIX domain
AL499_RS05675	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AL499_RS05680	PF00155	Aminotransferase class I and II
AL499_RS05685	PF07687	Peptidase dimerisation domain
AL499_RS05685	PF01546	Peptidase family M20/M25/M40
AL499_RS05690	PF00009	Elongation factor Tu GTP binding domain
AL499_RS05690	PF03144	Elongation factor Tu domain 2
AL499_RS05690	PF03143	Elongation factor Tu C-terminal domain
AL499_RS05695	PF00679	Elongation factor G C-terminus
AL499_RS05695	PF14492	Elongation Factor G, domain II
AL499_RS05695	PF03764	Elongation factor G, domain IV
AL499_RS05695	PF00009	Elongation factor Tu GTP binding domain
AL499_RS05695	PF03144	Elongation factor Tu domain 2
AL499_RS05700	PF00177	Ribosomal protein S7p/S5e
AL499_RS05705	PF00164	Ribosomal protein S12/S23
AL499_RS05710	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
AL499_RS05715	PF00623	RNA polymerase Rpb1, domain 2
AL499_RS05715	PF04997	RNA polymerase Rpb1, domain 1
AL499_RS05715	PF05000	RNA polymerase Rpb1, domain 4
AL499_RS05715	PF04998	RNA polymerase Rpb1, domain 5
AL499_RS05715	PF04983	RNA polymerase Rpb1, domain 3
AL499_RS05720	PF04561	RNA polymerase Rpb2, domain 2
AL499_RS05720	PF10385	RNA polymerase beta subunit external 1 domain
AL499_RS05720	PF00562	RNA polymerase Rpb2, domain 6
AL499_RS05720	PF04560	RNA polymerase Rpb2, domain 7
AL499_RS05720	PF04563	RNA polymerase beta subunit
AL499_RS05720	PF04565	RNA polymerase Rpb2, domain 3
AL499_RS05725	PF05175	Methyltransferase small domain
AL499_RS05730	PF00542	Ribosomal protein L7/L12 C-terminal domain
AL499_RS05730	PF16320	Ribosomal protein L7/L12 dimerisation domain
AL499_RS05735	PF00466	Ribosomal protein L10
AL499_RS05740	PF00687	Ribosomal protein L1p/L10e family
AL499_RS05745	PF03946	Ribosomal protein L11, N-terminal domain
AL499_RS05745	PF00298	Ribosomal protein L11, RNA binding domain
AL499_RS05750	PF02357	Transcription termination factor nusG
AL499_RS05750	PF00467	KOW motif
AL499_RS05755	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AL499_RS05765	PF05991	YacP-like NYN domain
AL499_RS05770	PF00588	SpoU rRNA Methylase family
AL499_RS05770	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL499_RS05775	PF00636	Ribonuclease III domain
AL499_RS05780	PF09190	DALR domain
AL499_RS05780	PF01406	tRNA synthetases class I (C) catalytic domain
AL499_RS05785	PF00132	Bacterial transferase hexapeptide (six repeats)
AL499_RS05790	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL499_RS05800	PF18073	Rubredoxin metal binding domain
AL499_RS05805	PF10431	C-terminal, D2-small domain, of ClpB protein 
AL499_RS05805	PF02861	Clp amino terminal domain, pathogenicity island component
AL499_RS05805	PF17871	AAA lid domain
AL499_RS05805	PF07724	AAA domain (Cdc48 subfamily)
AL499_RS05805	PF00004	ATPase family associated with various cellular activities (AAA)
AL499_RS05810	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
AL499_RS05815	PF02151	UvrB/uvrC motif
AL499_RS05820	PF17727	CtsR C-terminal dimerization domain
AL499_RS05820	PF05848	CtsR N-terminal HTH domain
AL499_RS05825	PF01773	Na+ dependent nucleoside transporter N-terminus
AL499_RS05825	PF07662	Na+ dependent nucleoside transporter C-terminus
AL499_RS05830	PF01174	SNO glutamine amidotransferase family
AL499_RS05835	PF01680	SOR/SNZ family
AL499_RS05840	PF00155	Aminotransferase class I and II
AL499_RS05840	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS05925	PF00152	tRNA synthetases class II (D, K and N) 
AL499_RS05925	PF01336	OB-fold nucleic acid binding domain
AL499_RS05930	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL499_RS05935	PF02152	Dihydroneopterin aldolase
AL499_RS05940	PF00809	Pterin binding enzyme
AL499_RS05945	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS05950	PF01430	Hsp33 protein
AL499_RS05955	PF17862	AAA+ lid domain
AL499_RS05955	PF06480	FtsH Extracellular
AL499_RS05955	PF01434	Peptidase family M41
AL499_RS05955	PF00004	ATPase family associated with various cellular activities (AAA)
AL499_RS05960	PF00156	Phosphoribosyl transferase domain
AL499_RS05965	PF01171	PP-loop family
AL499_RS05965	PF11734	TilS substrate C-terminal domain
AL499_RS05970	PF00575	S1 RNA binding domain
AL499_RS05980	PF01479	S4 domain
AL499_RS05985	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL499_RS05985	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL499_RS05990	PF14667	Polysaccharide biosynthesis C-terminal domain
AL499_RS05990	PF01943	Polysaccharide biosynthesis protein
AL499_RS05995	PF17757	UvrB interaction domain
AL499_RS05995	PF02559	CarD-like/TRCF domain
AL499_RS05995	PF00270	DEAD/DEAH box helicase
AL499_RS05995	PF03461	TRCF domain
AL499_RS05995	PF00271	Helicase conserved C-terminal domain
AL499_RS06000	PF01195	Peptidyl-tRNA hydrolase
AL499_RS06005	PF01386	Ribosomal L25p family
AL499_RS06005	PF14693	Ribosomal protein TL5, C-terminal domain
AL499_RS06010	PF14572	Phosphoribosyl synthetase-associated domain
AL499_RS06010	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AL499_RS06015	PF00483	Nucleotidyl transferase
AL499_RS06015	PF00132	Bacterial transferase hexapeptide (six repeats)
AL499_RS06020	PF04026	SpoVG
AL499_RS06025	PF01042	Endoribonuclease L-PSP
AL499_RS06030	PF00156	Phosphoribosyl transferase domain
AL499_RS06030	PF09182	Bacterial purine repressor, N-terminal
AL499_RS06035	PF00288	GHMP kinases N terminal domain
AL499_RS06035	PF08544	GHMP kinases C terminal 
AL499_RS06040	PF06257	Biofilm formation stimulator VEG
AL499_RS06045	PF00398	Ribosomal RNA adenine dimethylase
AL499_RS06050	PF13331	Domain of unknown function (DUF4093)
AL499_RS06050	PF01751	Toprim domain
AL499_RS06055	PF01026	TatD related DNase
AL499_RS06060	PF09334	tRNA synthetases class I (M)
AL499_RS06060	PF08264	Anticodon-binding domain of tRNA
AL499_RS06060	PF01588	Putative tRNA binding domain
AL499_RS06065	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL499_RS06070	PF01541	GIY-YIG catalytic domain
AL499_RS06075	PF05175	Methyltransferase small domain
AL499_RS06080	PF06156	Initiation control protein YabA
AL499_RS06085	PF04468	PSP1 C-terminal conserved region
AL499_RS06090	PF09115	DNA polymerase III, delta subunit, C terminal
AL499_RS06095	PF06153	Cyclic-di-AMP receptor
AL499_RS06100	PF02223	Thymidylate kinase
AL499_RS06105	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL499_RS06105	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL499_RS06110	PF13302	Acetyltransferase (GNAT) domain
AL499_RS06140	PF02132	RecR protein
AL499_RS06140	PF13662	Toprim domain
AL499_RS06145	PF02575	YbaB/EbfC DNA-binding family
AL499_RS06150	PF12169	DNA polymerase III subunits gamma and tau domain III
AL499_RS06165	PF07702	UTRA domain
AL499_RS06165	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS06170	PF16657	Maltogenic Amylase, C-terminal domain
AL499_RS06170	PF00128	Alpha amylase, catalytic domain
AL499_RS06175	PF00367	phosphotransferase system, EIIB
AL499_RS06175	PF02378	Phosphotransferase system, EIIC 
AL499_RS06185	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS06185	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL499_RS06190	PF04898	Glutamate synthase central domain
AL499_RS06190	PF00310	Glutamine amidotransferases class-II
AL499_RS06190	PF01493	GXGXG motif
AL499_RS06190	PF01645	Conserved region in glutamate synthase
AL499_RS06195	PF03466	LysR substrate binding domain
AL499_RS06195	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS06220	PF05257	CHAP domain
AL499_RS06220	PF01476	LysM domain
AL499_RS06225	PF03180	NLPA lipoprotein
AL499_RS06230	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS06235	PF09383	NIL domain
AL499_RS06235	PF00005	ABC transporter
AL499_RS06240	PF00664	ABC transporter transmembrane region
AL499_RS06240	PF00005	ABC transporter
AL499_RS06245	PF08021	Siderophore-interacting FAD-binding domain
AL499_RS06245	PF00664	ABC transporter transmembrane region
AL499_RS06245	PF04954	Siderophore-interacting protein
AL499_RS06245	PF00005	ABC transporter
AL499_RS06250	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL499_RS06255	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS06265	PF00209	Sodium:neurotransmitter symporter family
AL499_RS06275	PF12146	Serine aminopeptidase, S33
AL499_RS06285	PF10057	Uncharacterized conserved protein (DUF2294)
AL499_RS06290	PF10070	Uncharacterized protein conserved in bacteria (DUF2309)
AL499_RS06295	PF00361	Proton-conducting membrane transporter
AL499_RS06295	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL499_RS06305	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL499_RS06305	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL499_RS06310	PF00753	Metallo-beta-lactamase superfamily
AL499_RS06325	PF00117	Glutamine amidotransferase class-I
AL499_RS06325	PF00958	GMP synthase C terminal domain
AL499_RS06330	PF00478	IMP dehydrogenase / GMP reductase domain
AL499_RS06330	PF00571	CBS domain
AL499_RS06335	PF00860	Permease family
AL499_RS06340	PF00156	Phosphoribosyl transferase domain
AL499_RS06345	PF11181	Heat induced stress protein YflT
AL499_RS06360	PF00375	Sodium:dicarboxylate symporter family
AL499_RS06365	PF00881	Nitroreductase family
AL499_RS06375	PF00578	AhpC/TSA family
AL499_RS06380	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS06380	PF13192	Thioredoxin domain
AL499_RS06395	PF00300	Histidine phosphatase superfamily (branch 1)
AL499_RS06420	PF01022	Bacterial regulatory protein, arsR family
AL499_RS06435	PF10668	Phage terminase small subunit
AL499_RS06435	PF03592	Terminase small subunit 
AL499_RS06505	PF00589	Phage integrase family
AL499_RS06505	PF14659	Phage integrase, N-terminal SAM-like domain
AL499_RS06510	PF01084	Ribosomal protein S18
AL499_RS06515	PF00436	Single-strand binding protein family
AL499_RS06520	PF01250	Ribosomal protein S6
AL499_RS06535	PF06071	Protein of unknown function (DUF933)
AL499_RS06535	PF01926	50S ribosome-binding GTPase
AL499_RS06540	PF06107	Bacterial protein of unknown function (DUF951)
AL499_RS06545	PF00924	Mechanosensitive ion channel
AL499_RS06550	PF17762	HTH domain found in ParB protein
AL499_RS06550	PF02195	ParB-like nuclease domain
AL499_RS06555	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL499_RS06560	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL499_RS06565	PF02219	Methylenetetrahydrofolate reductase
AL499_RS06565	PF02574	Homocysteine S-methyltransferase
AL499_RS06570	PF08267	Cobalamin-independent synthase, N-terminal domain
AL499_RS06570	PF01717	Cobalamin-independent synthase, Catalytic domain
AL499_RS06590	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL499_RS06590	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL499_RS06595	PF02687	FtsX-like permease family
AL499_RS06595	PF12704	MacB-like periplasmic core domain
AL499_RS06600	PF00005	ABC transporter
AL499_RS06620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS06620	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS06630	PF00005	ABC transporter
AL499_RS06635	PF00072	Response regulator receiver domain
AL499_RS06635	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS06640	PF01306	LacY proton/sugar symporter
AL499_RS06645	PF08244	Glycosyl hydrolases family 32 C terminal
AL499_RS06645	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AL499_RS06650	PF00356	Bacterial regulatory proteins, lacI family
AL499_RS06660	PF09234	Domain of unknown function (DUF1963)
AL499_RS06665	PF13302	Acetyltransferase (GNAT) domain
AL499_RS06670	PF07690	Major Facilitator Superfamily
AL499_RS06680	PF10502	Signal peptidase, peptidase S26 
AL499_RS06685	PF00005	ABC transporter
AL499_RS06690	PF02687	FtsX-like permease family
AL499_RS06700	PF08671	Anti-repressor SinI
AL499_RS06700	PF01381	Helix-turn-helix
AL499_RS06715	PF07690	Major Facilitator Superfamily
AL499_RS06725	PF00107	Zinc-binding dehydrogenase
AL499_RS06725	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS06730	PF00440	Bacterial regulatory proteins, tetR family
AL499_RS06730	PF16295	Tetracyclin repressor-like, C-terminal domain
AL499_RS06745	PF17762	HTH domain found in ParB protein
AL499_RS06745	PF02195	ParB-like nuclease domain
AL499_RS06750	PF02527	rRNA small subunit methyltransferase G
AL499_RS06755	PF01134	Glucose inhibited division protein A
AL499_RS06755	PF13932	GidA associated domain
AL499_RS06760	PF10396	GTP-binding protein TrmE N-terminus
AL499_RS06760	PF12631	MnmE helical domain
AL499_RS06760	PF01926	50S ribosome-binding GTPase
AL499_RS06765	PF00825	Ribonuclease P
AL499_RS06770	PF00468	Ribosomal protein L34
AL499_RS06775	PF00308	Bacterial dnaA  protein
AL499_RS06775	PF11638	DnaA N-terminal domain
AL499_RS06775	PF08299	Bacterial dnaA protein helix-turn-helix
AL499_RS06780	PF00712	DNA polymerase III beta subunit, N-terminal domain
AL499_RS06780	PF02768	DNA polymerase III beta subunit, C-terminal domain
AL499_RS06780	PF02767	DNA polymerase III beta subunit, central domain
AL499_RS06790	PF02463	RecF/RecN/SMC N terminal domain
AL499_RS06795	PF01751	Toprim domain
AL499_RS06795	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS06795	PF00204	DNA gyrase B
AL499_RS06795	PF00986	DNA gyrase B subunit, carboxyl terminus
AL499_RS06800	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL499_RS06800	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL499_RS06805	PF01256	Carbohydrate kinase
AL499_RS06810	PF02403	Seryl-tRNA synthetase N-terminal domain
AL499_RS06810	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL499_RS06815	PF03591	AzlC protein
AL499_RS06825	PF00561	alpha/beta hydrolase fold
AL499_RS06835	PF01368	DHH family
AL499_RS06835	PF02272	DHHA1 domain
AL499_RS06840	PF01281	Ribosomal protein L9, N-terminal domain
AL499_RS06840	PF03948	Ribosomal protein L9, C-terminal domain
AL499_RS06845	PF00772	DnaB-like helicase N terminal domain
AL499_RS06845	PF03796	DnaB-like helicase C terminal domain
AL499_RS06850	PF00709	Adenylosuccinate synthetase
AL499_RS06865	PF00072	Response regulator receiver domain
AL499_RS06865	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS06870	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS06870	PF00989	PAS fold
AL499_RS06870	PF00672	HAMP domain
AL499_RS06870	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS06875	PF07435	YycH protein
AL499_RS06885	PF01757	Acyltransferase family
AL499_RS06890	PF01522	Polysaccharide deacetylase
AL499_RS06900	PF00535	Glycosyl transferase family 2
AL499_RS06905	PF03173	Putative carbohydrate binding domain
AL499_RS06905	PF02838	Glycosyl hydrolase family 20, domain 2
AL499_RS06905	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL499_RS06905	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL499_RS06910	PF00753	Metallo-beta-lactamase superfamily
AL499_RS06915	PF02590	Predicted SPOUT methyltransferase
AL499_RS06925	PF01037	Lrp/AsnC ligand binding domain
AL499_RS06935	PF03372	Endonuclease/Exonuclease/phosphatase family
AL499_RS06945	PF12146	Serine aminopeptidase, S33
AL499_RS06955	PF01207	Dihydrouridine synthase (Dus)
AL499_RS06965	PF00005	ABC transporter
AL499_RS07000	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS07000	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS07005	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS07005	PF00072	Response regulator receiver domain
AL499_RS07020	PF00005	ABC transporter
AL499_RS07020	PF13732	Domain of unknown function (DUF4162)
AL499_RS07035	PF00668	Condensation domain
AL499_RS07035	PF00550	Phosphopantetheine attachment site
AL499_RS07035	PF00975	Thioesterase domain
AL499_RS07035	PF00501	AMP-binding enzyme
AL499_RS07035	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS07045	PF04507	Csa1 family
AL499_RS07050	PF04507	Csa1 family
AL499_RS07055	PF04507	Csa1 family
AL499_RS07075	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL499_RS07075	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL499_RS07080	PF07702	UTRA domain
AL499_RS07080	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS07085	PF01380	SIS domain
AL499_RS07090	PF01791	DeoC/LacD family aldolase
AL499_RS07095	PF03830	PTS system sorbose subfamily IIB component
AL499_RS07100	PF03609	PTS system sorbose-specific iic component
AL499_RS07105	PF03613	PTS system mannose/fructose/sorbose family IID component
AL499_RS07120	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS07120	PF00072	Response regulator receiver domain
AL499_RS07125	PF13493	Domain of unknown function (DUF4118)
AL499_RS07125	PF02702	Osmosensitive K+ channel His kinase sensor domain
AL499_RS07125	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS07125	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS07135	PF03814	Potassium-transporting ATPase A subunit
AL499_RS07145	PF02669	K+-transporting ATPase, c chain
AL499_RS07150	PF04650	YSIRK type signal peptide
AL499_RS07150	PF05031	Iron Transport-associated domain 
AL499_RS07150	PF00746	LPXTG cell wall anchor motif
AL499_RS07165	PF00005	ABC transporter
AL499_RS07170	PF00746	LPXTG cell wall anchor motif
AL499_RS07170	PF05031	Iron Transport-associated domain 
AL499_RS07175	PF05031	Iron Transport-associated domain 
AL499_RS07180	PF05031	Iron Transport-associated domain 
AL499_RS07180	PF00746	LPXTG cell wall anchor motif
AL499_RS07185	PF01497	Periplasmic binding protein
AL499_RS07190	PF01032	FecCD transport family
AL499_RS07195	PF00005	ABC transporter
AL499_RS07200	PF04203	Sortase domain
AL499_RS07205	PF03992	Antibiotic biosynthesis monooxygenase
AL499_RS07210	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL499_RS07210	PF05257	CHAP domain
AL499_RS07215	PF01032	FecCD transport family
AL499_RS07220	PF01032	FecCD transport family
AL499_RS07225	PF01497	Periplasmic binding protein
AL499_RS07230	PF04299	Putative FMN-binding domain
AL499_RS07235	PF13673	Acetyltransferase (GNAT) domain
AL499_RS07240	PF01047	MarR family
AL499_RS07250	PF02558	Ketopantoate reductase PanE/ApbA
AL499_RS07250	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL499_RS07255	PF00005	ABC transporter
AL499_RS07255	PF03459	TOBE domain
AL499_RS07255	PF17912	MalK OB fold domain
AL499_RS07260	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07270	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07280	PF01554	MatE
AL499_RS07285	PF08220	DeoR-like helix-turn-helix domain
AL499_RS07285	PF00455	DeoR C terminal sensor domain
AL499_RS07290	PF00300	Histidine phosphatase superfamily (branch 1)
AL499_RS07295	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS07295	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS07300	PF00072	Response regulator receiver domain
AL499_RS07300	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS07330	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS07330	PF03466	LysR substrate binding domain
AL499_RS07335	PF08402	TOBE domain
AL499_RS07335	PF00005	ABC transporter
AL499_RS07345	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07350	PF00149	Calcineurin-like phosphoesterase
AL499_RS07355	PF02824	TGS domain
AL499_RS07355	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL499_RS07355	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL499_RS07355	PF03129	Anticodon binding domain
AL499_RS07360	PF01494	FAD binding domain
AL499_RS07365	PF05525	Branched-chain amino acid transport protein
AL499_RS07375	PF17866	AAA lid domain
AL499_RS07375	PF00004	ATPase family associated with various cellular activities (AAA)
AL499_RS07385	PF00083	Sugar (and other) transporter
AL499_RS07395	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL499_RS07400	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07405	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07405	PF12911	N-terminal TM domain of oligopeptide transport permease C
AL499_RS07410	PF00005	ABC transporter
AL499_RS07415	PF00005	ABC transporter
AL499_RS07420	PF07690	Major Facilitator Superfamily
AL499_RS07425	PF10460	Peptidase M30
AL499_RS07430	PF01965	DJ-1/PfpI family
AL499_RS07435	PF13520	Amino acid permease
AL499_RS07440	PF01641	SelR domain
AL499_RS07440	PF01625	Peptide methionine sulfoxide reductase
AL499_RS07440	PF08534	Redoxin
AL499_RS07445	PF00117	Glutamine amidotransferase class-I
AL499_RS07445	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL499_RS07450	PF07859	alpha/beta hydrolase fold
AL499_RS07460	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL499_RS07460	PF00367	phosphotransferase system, EIIB
AL499_RS07460	PF02378	Phosphotransferase system, EIIC 
AL499_RS07480	PF07943	Penicillin-binding protein 5, C-terminal domain
AL499_RS07480	PF00768	D-alanyl-D-alanine carboxypeptidase
AL499_RS07490	PF03176	MMPL family
AL499_RS07495	PF16363	GDP-mannose 4,6 dehydratase
AL499_RS07505	PF02901	Pyruvate formate lyase-like
AL499_RS07505	PF01228	Glycine radical
AL499_RS07510	PF04055	Radical SAM superfamily
AL499_RS07515	PF01022	Bacterial regulatory protein, arsR family
AL499_RS07520	PF02040	Arsenical pump membrane protein
AL499_RS07525	PF00005	ABC transporter
AL499_RS07540	PF00106	short chain dehydrogenase
AL499_RS07545	PF00313	'Cold-shock' DNA-binding domain
AL499_RS07560	PF04235	Protein of unknown function (DUF418)
AL499_RS07565	PF03073	TspO/MBR family
AL499_RS07575	PF01593	Flavin containing amine oxidoreductase
AL499_RS07580	PF00535	Glycosyl transferase family 2
AL499_RS07590	PF01593	Flavin containing amine oxidoreductase
AL499_RS07595	PF07690	Major Facilitator Superfamily
AL499_RS07610	PF00005	ABC transporter
AL499_RS07640	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL499_RS07645	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07650	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS07655	PF00005	ABC transporter
AL499_RS07655	PF09383	NIL domain
AL499_RS07660	PF00005	ABC transporter
AL499_RS07665	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS07665	PF00205	Thiamine pyrophosphate enzyme, central domain
AL499_RS07665	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL499_RS07680	PF00005	ABC transporter
AL499_RS07690	PF04264	YceI-like domain
AL499_RS07695	PF03606	C4-dicarboxylate anaerobic carrier
AL499_RS07705	PF00083	Sugar (and other) transporter
AL499_RS07720	PF00797	N-acetyltransferase
AL499_RS07735	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL499_RS07735	PF00367	phosphotransferase system, EIIB
AL499_RS07735	PF02378	Phosphotransferase system, EIIC 
AL499_RS07760	PF07690	Major Facilitator Superfamily
AL499_RS07765	PF00890	FAD binding domain
AL499_RS07765	PF04205	FMN-binding domain
AL499_RS07765	PF03358	NADPH-dependent FMN reductase
AL499_RS07770	PF02424	ApbE family
AL499_RS07780	PF00155	Aminotransferase class I and II
AL499_RS07790	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS07790	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS07795	PF00676	Dehydrogenase E1 component
AL499_RS07800	PF02780	Transketolase, C-terminal domain
AL499_RS07800	PF02779	Transketolase, pyrimidine binding domain
AL499_RS07805	PF02817	e3 binding domain
AL499_RS07805	PF00364	Biotin-requiring enzyme
AL499_RS07805	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL499_RS07810	PF03551	Transcriptional regulator PadR-like family
AL499_RS07835	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS07835	PF00874	PRD domain
AL499_RS07835	PF05043	Mga helix-turn-helix domain
AL499_RS07835	PF08279	HTH domain
AL499_RS07840	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS07840	PF02378	Phosphotransferase system, EIIC 
AL499_RS07840	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL499_RS07845	PF01238	Phosphomannose isomerase type I
AL499_RS07850	PF00067	Cytochrome P450
AL499_RS07855	PF16715	Cyclodipeptide synthase
AL499_RS07860	PF01047	MarR family
AL499_RS07865	PF07690	Major Facilitator Superfamily
AL499_RS07890	PF02096	60Kd inner membrane protein
AL499_RS07895	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL499_RS07895	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL499_RS07895	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL499_RS07900	PF13520	Amino acid permease
AL499_RS07935	PF03099	Biotin/lipoate A/B protein ligase family
AL499_RS07935	PF10437	Bacterial lipoate protein ligase C-terminus
AL499_RS07945	PF01661	Macro domain
AL499_RS07950	PF01597	Glycine cleavage H-protein
AL499_RS07955	PF00296	Luciferase-like monooxygenase
AL499_RS07960	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL499_RS07970	PF02028	BCCT, betaine/carnitine/choline family transporter
AL499_RS07975	PF01979	Amidohydrolase family
AL499_RS07985	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL499_RS07990	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
AL499_RS07995	PF01380	SIS domain
AL499_RS07995	PF01418	Helix-turn-helix domain, rpiR family
AL499_RS08000	PF00480	ROK family
AL499_RS08005	PF00701	Dihydrodipicolinate synthetase family
AL499_RS08010	PF00474	Sodium:solute symporter family
AL499_RS08015	PF07670	Nucleoside recognition
AL499_RS08015	PF07662	Na+ dependent nucleoside transporter C-terminus
AL499_RS08015	PF01773	Na+ dependent nucleoside transporter N-terminus
AL499_RS08020	PF04227	Indigoidine synthase A like protein
AL499_RS08050	PF01470	Pyroglutamyl peptidase
AL499_RS08065	PF07690	Major Facilitator Superfamily
AL499_RS08070	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
AL499_RS08075	PF00874	PRD domain
AL499_RS08075	PF05043	Mga helix-turn-helix domain
AL499_RS08075	PF08279	HTH domain
AL499_RS08075	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS08080	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL499_RS08090	PF03611	PTS system sugar-specific permease component
AL499_RS08095	PF00581	Rhodanese-like domain
AL499_RS08095	PF17773	UPF0176 acylphosphatase like domain
AL499_RS08095	PF12368	Rhodanase C-terminal
AL499_RS08100	PF08450	SMP-30/Gluconolactonase/LRE-like region
AL499_RS08115	PF00294	pfkB family carbohydrate kinase
AL499_RS08125	PF00005	ABC transporter
AL499_RS08135	PF01381	Helix-turn-helix
AL499_RS08160	PF01468	GA module
AL499_RS08165	PF05257	CHAP domain
AL499_RS08165	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL499_RS08170	PF01061	ABC-2 type transporter
AL499_RS08185	PF00589	Phage integrase family
AL499_RS08185	PF02899	Phage integrase, N-terminal SAM-like domain
AL499_RS08190	PF02899	Phage integrase, N-terminal SAM-like domain
AL499_RS08190	PF00589	Phage integrase family
AL499_RS08205	PF08863	YolD-like protein
AL499_RS08210	PF08139	Prokaryotic membrane lipoprotein lipid attachment site
AL499_RS08215	PF00905	Penicillin binding protein transpeptidase domain
AL499_RS08215	PF05569	BlaR1 peptidase M56
AL499_RS08220	PF03965	Penicillinase repressor
AL499_RS08230	PF00756	Putative esterase
AL499_RS08235	PF09587	Bacterial capsule synthesis protein PGA_cap
AL499_RS08240	PF05908	Poly-gamma-glutamate hydrolase
AL499_RS08245	PF02525	Flavodoxin-like fold
AL499_RS08250	PF02706	Chain length determinant protein
AL499_RS08255	PF13614	AAA domain
AL499_RS08265	PF02719	Polysaccharide biosynthesis protein
AL499_RS08270	PF08485	Polysaccharide biosynthesis protein C-terminal
AL499_RS08270	PF02719	Polysaccharide biosynthesis protein
AL499_RS08275	PF01370	NAD dependent epimerase/dehydratase family
AL499_RS08280	PF02350	UDP-N-acetylglucosamine 2-epimerase
AL499_RS08295	PF00132	Bacterial transferase hexapeptide (six repeats)
AL499_RS08295	PF14602	Hexapeptide repeat of succinyl-transferase
AL499_RS08295	PF12464	Maltose acetyltransferase 
AL499_RS08310	PF02397	Bacterial sugar transferase
AL499_RS08315	PF01370	NAD dependent epimerase/dehydratase family
AL499_RS08320	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL499_RS08320	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL499_RS08320	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AL499_RS08325	PF02350	UDP-N-acetylglucosamine 2-epimerase
AL499_RS08330	PF00245	Alkaline phosphatase
AL499_RS08340	PF00072	Response regulator receiver domain
AL499_RS08340	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS08345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS08350	PF00005	ABC transporter
AL499_RS08375	PF00296	Luciferase-like monooxygenase
AL499_RS08385	PF00746	LPXTG cell wall anchor motif
AL499_RS08385	PF17210	SdrD B-like domain
AL499_RS08385	PF04650	YSIRK type signal peptide
AL499_RS08385	PF17961	Bacterial Ig domain
AL499_RS08385	PF00746	LPXTG cell wall anchor motif
AL499_RS08385	PF17210	SdrD B-like domain
AL499_RS08385	PF04650	YSIRK type signal peptide
AL499_RS08385	PF17961	Bacterial Ig domain
AL499_RS08395	PF00258	Flavodoxin
AL499_RS08395	PF00175	Oxidoreductase NAD-binding domain 
AL499_RS08395	PF00667	FAD binding domain
AL499_RS08400	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL499_RS08400	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL499_RS08405	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL499_RS08410	PF14824	Sirohaem biosynthesis protein central
AL499_RS08415	PF01925	Sulfite exporter TauE/SafE
AL499_RS08420	PF14306	PUA-like domain
AL499_RS08420	PF01747	ATP-sulfurylase
AL499_RS08430	PF01546	Peptidase family M20/M25/M40
AL499_RS08430	PF07687	Peptidase dimerisation domain
AL499_RS08440	PF03477	ATP cone domain
AL499_RS08440	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL499_RS08450	PF03605	Anaerobic c4-dicarboxylate membrane transporter
AL499_RS08460	PF02028	BCCT, betaine/carnitine/choline family transporter
AL499_RS08470	PF00171	Aldehyde dehydrogenase family
AL499_RS08475	PF00732	GMC oxidoreductase
AL499_RS08475	PF05199	GMC oxidoreductase
AL499_RS08480	PF07687	Peptidase dimerisation domain
AL499_RS08480	PF01546	Peptidase family M20/M25/M40
AL499_RS08495	PF00501	AMP-binding enzyme
AL499_RS08495	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS08500	PF00391	PEP-utilising enzyme, mobile domain
AL499_RS08500	PF02896	PEP-utilising enzyme, TIM barrel domain
AL499_RS08500	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL499_RS08505	PF03618	Kinase/pyrophosphorylase
AL499_RS08510	PF06039	Malate:quinone oxidoreductase (Mqo)
AL499_RS08515	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS08515	PF07702	UTRA domain
AL499_RS08520	PF02378	Phosphotransferase system, EIIC 
AL499_RS08520	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL499_RS08520	PF00367	phosphotransferase system, EIIB
AL499_RS08525	PF00232	Glycosyl hydrolase family 1
AL499_RS08535	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS08535	PF03466	LysR substrate binding domain
AL499_RS08545	PF01494	FAD binding domain
AL499_RS08550	PF00274	Fructose-bisphosphate aldolase class-I
AL499_RS08565	PF03180	NLPA lipoprotein
AL499_RS08570	PF00202	Aminotransferase class-III
AL499_RS08575	PF00535	Glycosyl transferase family 2
AL499_RS08580	PF00535	Glycosyl transferase family 2
AL499_RS08580	PF18674	TarS beta-glycosyltransferase C-terminal domain 1
AL499_RS08585	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS08585	PF00535	Glycosyl transferase family 2
AL499_RS08595	PF13520	Amino acid permease
AL499_RS08600	PF03466	LysR substrate binding domain
AL499_RS08600	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS08605	PF00205	Thiamine pyrophosphate enzyme, central domain
AL499_RS08605	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS08605	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL499_RS08610	PF03306	Alpha-acetolactate decarboxylase
AL499_RS08615	PF02652	L-lactate permease
AL499_RS08630	PF02677	Epoxyqueuosine reductase QueH
AL499_RS08635	PF01180	Dihydroorotate dehydrogenase
AL499_RS08640	PF03881	Fructosamine kinase
AL499_RS08645	PF00561	alpha/beta hydrolase fold
AL499_RS08655	PF00106	short chain dehydrogenase
AL499_RS08660	PF00440	Bacterial regulatory proteins, tetR family
AL499_RS08680	PF05979	Bacterial protein of unknown function (DUF896)
AL499_RS08695	PF07690	Major Facilitator Superfamily
AL499_RS08705	PF00324	Amino acid permease
AL499_RS08720	PF04343	Protein of unknown function, DUF488
AL499_RS08725	PF03976	Polyphosphate kinase 2 (PPK2)
AL499_RS08730	PF01464	Transglycosylase SLT domain
AL499_RS08735	PF01757	Acyltransferase family
AL499_RS08740	PF00155	Aminotransferase class I and II
AL499_RS08745	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS08745	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS08750	PF00403	Heavy-metal-associated domain
AL499_RS08755	PF00403	Heavy-metal-associated domain
AL499_RS08765	PF14602	Hexapeptide repeat of succinyl-transferase
AL499_RS08765	PF12464	Maltose acetyltransferase 
AL499_RS08770	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS08775	PF16363	GDP-mannose 4,6 dehydratase
AL499_RS08780	PF00171	Aldehyde dehydrogenase family
AL499_RS08790	PF03176	MMPL family
AL499_RS08800	PF01544	CorA-like Mg2+ transporter protein
AL499_RS08805	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL499_RS08805	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL499_RS08810	PF05480	Staphylococcus haemolytic protein
AL499_RS08815	PF05480	Staphylococcus haemolytic protein
AL499_RS08820	PF05480	Staphylococcus haemolytic protein
AL499_RS08830	PF00005	ABC transporter
AL499_RS08840	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
AL499_RS08840	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
AL499_RS08845	PF02803	Thiolase, C-terminal domain
AL499_RS08845	PF00108	Thiolase, N-terminal domain
AL499_RS08850	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL499_RS08855	PF05257	CHAP domain
AL499_RS08855	PF01476	LysM domain
AL499_RS08865	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS08865	PF03466	LysR substrate binding domain
AL499_RS08870	PF03788	LrgA family
AL499_RS08875	PF04172	LrgB-like family 
AL499_RS08880	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL499_RS08880	PF00205	Thiamine pyrophosphate enzyme, central domain
AL499_RS08880	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS08885	PF00107	Zinc-binding dehydrogenase
AL499_RS08885	PF13823	Alcohol dehydrogenase GroES-associated
AL499_RS08885	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS08895	PF00085	Thioredoxin
AL499_RS08900	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL499_RS08900	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL499_RS08905	PF07859	alpha/beta hydrolase fold
AL499_RS08905	PF00934	PE family
AL499_RS08915	PF08245	Mur ligase middle domain
AL499_RS08920	PF14102	Capsule biosynthesis CapC
AL499_RS08925	PF09587	Bacterial capsule synthesis protein PGA_cap
AL499_RS08935	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL499_RS08935	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL499_RS08945	PF01842	ACT domain
AL499_RS08945	PF03315	Serine dehydratase beta chain
AL499_RS08950	PF03313	Serine dehydratase alpha chain
AL499_RS08960	PF04203	Sortase domain
AL499_RS08965	PF07501	G5 domain
AL499_RS08965	PF17041	E domain
AL499_RS08965	PF00746	LPXTG cell wall anchor motif
AL499_RS08965	PF04650	YSIRK type signal peptide
AL499_RS08975	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS08975	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS08980	PF00881	Nitroreductase family
AL499_RS08990	PF00171	Aldehyde dehydrogenase family
AL499_RS08995	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL499_RS09000	PF14542	GCN5-related N-acetyl-transferase
AL499_RS09005	PF01435	Peptidase family M48
AL499_RS09015	PF01047	MarR family
AL499_RS09020	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL499_RS09025	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL499_RS09030	PF01738	Dienelactone hydrolase family
AL499_RS09045	PF06874	Firmicute fructose-1,6-bisphosphatase
AL499_RS09050	PF09335	SNARE associated Golgi protein
AL499_RS09060	PF05690	Thiazole biosynthesis protein ThiG
AL499_RS09070	PF01266	FAD dependent oxidoreductase
AL499_RS09080	PF07690	Major Facilitator Superfamily
AL499_RS09095	PF09954	Uncharacterized protein conserved in bacteria (DUF2188)
AL499_RS09100	PF04607	Region found in RelA / SpoT proteins
AL499_RS09115	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS09115	PF07729	FCD domain
AL499_RS09120	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL499_RS09120	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL499_RS09125	PF02447	GntP family permease
AL499_RS09130	PF00483	Nucleotidyl transferase
AL499_RS09140	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL499_RS09140	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL499_RS09140	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL499_RS09140	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL499_RS09145	PF00534	Glycosyl transferases group 1
AL499_RS09145	PF09318	Glycosyl transferase 1 domain A
AL499_RS09150	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS09150	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS09165	PF00106	short chain dehydrogenase
AL499_RS09170	PF01546	Peptidase family M20/M25/M40
AL499_RS09170	PF07687	Peptidase dimerisation domain
AL499_RS09175	PF13089	Polyphosphate kinase N-terminal domain
AL499_RS09175	PF17941	Polyphosphate kinase C-terminal domain 1
AL499_RS09175	PF13090	Polyphosphate kinase C-terminal domain 2
AL499_RS09175	PF02503	Polyphosphate kinase middle domain
AL499_RS09180	PF02541	Ppx/GppA phosphatase family
AL499_RS09185	PF03806	AbgT putative transporter family
AL499_RS09190	PF05343	M42 glutamyl aminopeptidase
AL499_RS09200	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL499_RS09205	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09210	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09215	PF00005	ABC transporter
AL499_RS09230	PF02872	5'-nucleotidase, C-terminal domain
AL499_RS09230	PF00149	Calcineurin-like phosphoesterase
AL499_RS09235	PF01645	Conserved region in glutamate synthase
AL499_RS09250	PF00005	ABC transporter
AL499_RS09255	PF03649	Uncharacterised protein family (UPF0014)
AL499_RS09260	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS09260	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS09265	PF00072	Response regulator receiver domain
AL499_RS09265	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS09275	PF07690	Major Facilitator Superfamily
AL499_RS09280	PF00135	Carboxylesterase family
AL499_RS09285	PF08818	Domain of unknown function (DU1801)
AL499_RS09290	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS09290	PF00107	Zinc-binding dehydrogenase
AL499_RS09295	PF00571	CBS domain
AL499_RS09295	PF00005	ABC transporter
AL499_RS09300	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09305	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL499_RS09310	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09340	PF04172	LrgB-like family 
AL499_RS09345	PF03788	LrgA family
AL499_RS09355	PF00072	Response regulator receiver domain
AL499_RS09355	PF04397	LytTr DNA-binding domain
AL499_RS09360	PF07694	5TMR of 5TMR-LYT
AL499_RS09360	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS09360	PF06580	Histidine kinase
AL499_RS09365	PF07690	Major Facilitator Superfamily
AL499_RS09370	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL499_RS09370	PF02558	Ketopantoate reductase PanE/ApbA
AL499_RS09375	PF00583	Acetyltransferase (GNAT) family
AL499_RS09385	PF02096	60Kd inner membrane protein
AL499_RS09390	PF00144	Beta-lactamase
AL499_RS09395	PF13520	Amino acid permease
AL499_RS09405	PF00999	Sodium/hydrogen exchanger family
AL499_RS09410	PF00324	Amino acid permease
AL499_RS09430	PF07690	Major Facilitator Superfamily
AL499_RS09440	PF02595	Glycerate kinase family
AL499_RS09450	PF01545	Cation efflux family
AL499_RS09450	PF16916	Dimerisation domain of Zinc Transporter
AL499_RS09460	PF00300	Histidine phosphatase superfamily (branch 1)
AL499_RS09465	PF07690	Major Facilitator Superfamily
AL499_RS09470	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL499_RS09475	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09480	PF00005	ABC transporter
AL499_RS09485	PF02388	FemAB family
AL499_RS09520	PF00005	ABC transporter
AL499_RS09530	PF01226	Formate/nitrite transporter
AL499_RS09540	PF04324	BFD-like [2Fe-2S] binding domain
AL499_RS09540	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL499_RS09540	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS09540	PF18267	Rubredoxin NAD+ reductase C-terminal domain
AL499_RS09540	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL499_RS09545	PF00355	Rieske [2Fe-2S] domain
AL499_RS09550	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL499_RS09555	PF00384	Molybdopterin oxidoreductase
AL499_RS09555	PF01568	Molydopterin dinucleotide binding domain
AL499_RS09555	PF14710	Respiratory nitrate reductase alpha N-terminal
AL499_RS09560	PF13247	4Fe-4S dicluster domain
AL499_RS09560	PF14711	Respiratory nitrate reductase beta C-terminal
AL499_RS09570	PF02665	Nitrate reductase gamma subunit
AL499_RS09580	PF07730	Histidine kinase
AL499_RS09580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS09585	PF00196	Bacterial regulatory proteins, luxR family
AL499_RS09585	PF00072	Response regulator receiver domain
AL499_RS09590	PF07690	Major Facilitator Superfamily
AL499_RS09595	PF01047	MarR family
AL499_RS09605	PF00375	Sodium:dicarboxylate symporter family
AL499_RS09630	PF12833	Helix-turn-helix domain
AL499_RS09630	PF00072	Response regulator receiver domain
AL499_RS09640	PF00367	phosphotransferase system, EIIB
AL499_RS09640	PF02378	Phosphotransferase system, EIIC 
AL499_RS09650	PF00440	Bacterial regulatory proteins, tetR family
AL499_RS09665	PF01554	MatE
AL499_RS09675	PF00005	ABC transporter
AL499_RS09680	PF00005	ABC transporter
AL499_RS09680	PF09383	NIL domain
AL499_RS09685	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09690	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS09695	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL499_RS09700	PF01774	UreD urease accessory protein
AL499_RS09705	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL499_RS09710	PF01730	UreF
AL499_RS09715	PF02814	UreE urease accessory protein, N-terminal domain
AL499_RS09715	PF05194	UreE urease accessory protein, C-terminal domain
AL499_RS09720	PF00449	Urease alpha-subunit, N-terminal domain
AL499_RS09720	PF01979	Amidohydrolase family
AL499_RS09725	PF00699	Urease beta subunit
AL499_RS09730	PF00547	Urease, gamma subunit
AL499_RS09735	PF03253	Urea transporter
AL499_RS09745	PF06100	MCRA family
AL499_RS09750	PF13667	ThiC-associated domain 
AL499_RS09750	PF01964	Radical SAM ThiC family
AL499_RS09755	PF00892	EamA-like transporter family
AL499_RS09800	PF07690	Major Facilitator Superfamily
AL499_RS09805	PF03466	LysR substrate binding domain
AL499_RS09805	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL499_RS09845	PF05154	TM2 domain
AL499_RS09850	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS09865	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS09865	PF00107	Zinc-binding dehydrogenase
AL499_RS09870	PF09375	Imelysin
AL499_RS09875	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AL499_RS09875	PF04261	Dyp-type peroxidase family 
AL499_RS09880	PF03239	Iron permease FTR1 family
AL499_RS09885	PF00902	Sec-independent protein translocase protein (TatC)
AL499_RS09890	PF02416	mttA/Hcf106 family
AL499_RS09895	PF00583	Acetyltransferase (GNAT) family
AL499_RS09905	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
AL499_RS09910	PF02652	L-lactate permease
AL499_RS09915	PF13439	Glycosyltransferase Family 4
AL499_RS09915	PF00534	Glycosyl transferases group 1
AL499_RS09920	PF06039	Malate:quinone oxidoreductase (Mqo)
AL499_RS09930	PF04397	LytTr DNA-binding domain
AL499_RS09935	PF00512	His Kinase A (phospho-acceptor) domain
AL499_RS09935	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS09935	PF00672	HAMP domain
AL499_RS09940	PF00072	Response regulator receiver domain
AL499_RS09940	PF00486	Transcriptional regulatory protein, C terminal
AL499_RS09945	PF02687	FtsX-like permease family
AL499_RS09950	PF00005	ABC transporter
AL499_RS09960	PF12802	MarR family
AL499_RS09970	PF07690	Major Facilitator Superfamily
AL499_RS09985	PF07690	Major Facilitator Superfamily
AL499_RS09995	PF07859	alpha/beta hydrolase fold
AL499_RS10010	PF01544	CorA-like Mg2+ transporter protein
AL499_RS10015	PF01070	FMN-dependent dehydrogenase
AL499_RS10020	PF02245	Methylpurine-DNA glycosylase (MPG)
AL499_RS10030	PF01263	Aldose 1-epimerase
AL499_RS10035	PF03473	MOSC domain
AL499_RS10035	PF03475	3-alpha domain
AL499_RS10040	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AL499_RS10045	PF02517	CPBP intramembrane metalloprotease
AL499_RS10075	PF01418	Helix-turn-helix domain, rpiR family
AL499_RS10075	PF01380	SIS domain
AL499_RS10080	PF00367	phosphotransferase system, EIIB
AL499_RS10080	PF02378	Phosphotransferase system, EIIC 
AL499_RS10090	PF13419	Haloacid dehalogenase-like hydrolase
AL499_RS10105	PF00324	Amino acid permease
AL499_RS10110	PF01380	SIS domain
AL499_RS10110	PF01418	Helix-turn-helix domain, rpiR family
AL499_RS10115	PF00367	phosphotransferase system, EIIB
AL499_RS10115	PF02378	Phosphotransferase system, EIIC 
AL499_RS10120	PF01380	SIS domain
AL499_RS10130	PF08220	DeoR-like helix-turn-helix domain
AL499_RS10130	PF00455	DeoR C terminal sensor domain
AL499_RS10140	PF03816	Cell envelope-related transcriptional attenuator domain
AL499_RS10145	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AL499_RS10145	PF01568	Molydopterin dinucleotide binding domain
AL499_RS10145	PF00384	Molybdopterin oxidoreductase
AL499_RS10145	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL499_RS10145	PF12838	4Fe-4S dicluster domain
AL499_RS10160	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL499_RS10160	PF13457	GW (Gly-Tryp) dipeptide domain
AL499_RS10170	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL499_RS10170	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL499_RS10175	PF00893	Small Multidrug Resistance protein
AL499_RS10180	PF00893	Small Multidrug Resistance protein
AL499_RS10185	PF05257	CHAP domain
AL499_RS10195	PF02558	Ketopantoate reductase PanE/ApbA
AL499_RS10195	PF02317	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
AL499_RS10200	PF03553	Na+/H+ antiporter family
AL499_RS10205	PF05257	CHAP domain
AL499_RS10230	PF07724	AAA domain (Cdc48 subfamily)
AL499_RS10230	PF17871	AAA lid domain
AL499_RS10230	PF10431	C-terminal, D2-small domain, of ClpB protein 
AL499_RS10230	PF00004	ATPase family associated with various cellular activities (AAA)
AL499_RS10235	PF02770	Acyl-CoA dehydrogenase, middle domain
AL499_RS10235	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
AL499_RS10235	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL499_RS10240	PF01497	Periplasmic binding protein
AL499_RS10250	PF02632	BioY family
AL499_RS10260	PF02634	FdhD/NarQ family
AL499_RS10270	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS10275	PF03459	TOBE domain
AL499_RS10275	PF00005	ABC transporter
AL499_RS10280	PF00899	ThiF family
AL499_RS10285	PF00994	Probable molybdopterin binding domain
AL499_RS10290	PF01967	MoaC family
AL499_RS10295	PF00994	Probable molybdopterin binding domain
AL499_RS10295	PF03453	MoeA N-terminal region (domain I and II)
AL499_RS10295	PF03454	MoeA C-terminal region (domain IV)
AL499_RS10305	PF02391	MoaE protein
AL499_RS10310	PF02597	ThiS family
AL499_RS10315	PF12804	MobA-like NTP transferase domain
AL499_RS10320	PF06463	Molybdenum Cofactor Synthesis C
AL499_RS10320	PF04055	Radical SAM superfamily
AL499_RS10325	PF01047	MarR family
AL499_RS10335	PF01047	MarR family
AL499_RS10345	PF02388	FemAB family
AL499_RS10350	PF00873	AcrB/AcrD/AcrF family
AL499_RS10370	PF01751	Toprim domain
AL499_RS10370	PF01131	DNA topoisomerase
AL499_RS10375	PF00860	Permease family
AL499_RS10385	PF00338	Ribosomal protein S10p/S20e
AL499_RS10390	PF00297	Ribosomal protein L3
AL499_RS10395	PF00573	Ribosomal protein L4/L1 family
AL499_RS10400	PF00276	Ribosomal protein L23
AL499_RS10405	PF00181	Ribosomal Proteins L2, RNA binding domain
AL499_RS10405	PF03947	Ribosomal Proteins L2, C-terminal domain
AL499_RS10410	PF00203	Ribosomal protein S19
AL499_RS10415	PF00237	Ribosomal protein L22p/L17e
AL499_RS10420	PF00189	Ribosomal protein S3, C-terminal domain
AL499_RS10420	PF07650	KH domain
AL499_RS10425	PF00252	Ribosomal protein L16p/L10e
AL499_RS10430	PF00831	Ribosomal L29 protein
AL499_RS10435	PF00366	Ribosomal protein S17
AL499_RS10440	PF00238	Ribosomal protein L14p/L23e
AL499_RS10445	PF00467	KOW motif
AL499_RS10445	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
AL499_RS10450	PF00673	ribosomal L5P family C-terminus
AL499_RS10450	PF00281	Ribosomal protein L5
AL499_RS10455	PF00253	Ribosomal protein S14p/S29e
AL499_RS10460	PF00410	Ribosomal protein S8
AL499_RS10465	PF00347	Ribosomal protein L6
AL499_RS10470	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
AL499_RS10475	PF00333	Ribosomal protein S5, N-terminal domain
AL499_RS10475	PF03719	Ribosomal protein S5, C-terminal domain
AL499_RS10480	PF00327	Ribosomal protein L30p/L7e
AL499_RS10485	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
AL499_RS10490	PF00344	SecY translocase
AL499_RS10495	PF05191	Adenylate kinase, active site lid
AL499_RS10500	PF01176	Translation initiation factor 1A / IF-1
AL499_RS10505	PF00444	Ribosomal protein L36
AL499_RS10510	PF00416	Ribosomal protein S13/S18
AL499_RS10515	PF00411	Ribosomal protein S11
AL499_RS10520	PF01000	RNA polymerase Rpb3/RpoA insert domain
AL499_RS10520	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AL499_RS10520	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AL499_RS10525	PF01196	Ribosomal protein L17
AL499_RS10530	PF00005	ABC transporter
AL499_RS10535	PF00005	ABC transporter
AL499_RS10540	PF02361	Cobalt transport protein
AL499_RS10545	PF01416	tRNA pseudouridine synthase
AL499_RS10550	PF00572	Ribosomal protein L13
AL499_RS10555	PF00380	Ribosomal protein S9/S16
AL499_RS10570	PF00005	ABC transporter
AL499_RS10570	PF13732	Domain of unknown function (DUF4162)
AL499_RS10580	PF00005	ABC transporter
AL499_RS10590	PF00440	Bacterial regulatory proteins, tetR family
AL499_RS10595	PF00501	AMP-binding enzyme
AL499_RS10595	PF00550	Phosphopantetheine attachment site
AL499_RS10595	PF00975	Thioesterase domain
AL499_RS10595	PF00668	Condensation domain
AL499_RS10595	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS10600	PF00550	Phosphopantetheine attachment site
AL499_RS10600	PF00501	AMP-binding enzyme
AL499_RS10600	PF00668	Condensation domain
AL499_RS10600	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS10605	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS10605	PF00550	Phosphopantetheine attachment site
AL499_RS10605	PF00668	Condensation domain
AL499_RS10605	PF00975	Thioesterase domain
AL499_RS10605	PF00501	AMP-binding enzyme
AL499_RS10615	PF00550	Phosphopantetheine attachment site
AL499_RS10615	PF00668	Condensation domain
AL499_RS10615	PF13193	AMP-binding enzyme C-terminal domain
AL499_RS10615	PF00501	AMP-binding enzyme
AL499_RS10630	PF02146	Sir2 family
AL499_RS10635	PF00455	DeoR C terminal sensor domain
AL499_RS10635	PF08220	DeoR-like helix-turn-helix domain
AL499_RS10640	PF02502	Ribose/Galactose Isomerase
AL499_RS10645	PF02502	Ribose/Galactose Isomerase
AL499_RS10650	PF00294	pfkB family carbohydrate kinase
AL499_RS10655	PF01791	DeoC/LacD family aldolase
AL499_RS10660	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL499_RS10665	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL499_RS10665	PF02378	Phosphotransferase system, EIIC 
AL499_RS10670	PF00232	Glycosyl hydrolase family 1
AL499_RS10680	PF00107	Zinc-binding dehydrogenase
AL499_RS10680	PF16884	N-terminal domain of oxidoreductase
AL499_RS10685	PF00107	Zinc-binding dehydrogenase
AL499_RS10685	PF08240	Alcohol dehydrogenase GroES-like domain
AL499_RS10700	PF03780	Asp23 family, cell envelope-related function
AL499_RS10715	PF01497	Periplasmic binding protein
AL499_RS10720	PF01032	FecCD transport family
AL499_RS10725	PF01032	FecCD transport family
AL499_RS10730	PF07670	Nucleoside recognition
AL499_RS10740	PF04307	LexA-binding, inner membrane-associated putative hydrolase
AL499_RS10745	PF01704	UTP--glucose-1-phosphate uridylyltransferase
AL499_RS10750	PF03006	Haemolysin-III related
AL499_RS10755	PF07690	Major Facilitator Superfamily
AL499_RS10760	PF17080	Multidrug Resistance efflux pump
AL499_RS10765	PF07690	Major Facilitator Superfamily
AL499_RS10770	PF10609	NUBPL iron-transfer P-loop NTPase
AL499_RS10820	PF02457	DisA bacterial checkpoint controller nucleotide-binding
AL499_RS10830	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL499_RS10830	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL499_RS10830	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL499_RS10830	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL499_RS10835	PF01380	SIS domain
AL499_RS10855	PF16916	Dimerisation domain of Zinc Transporter
AL499_RS10855	PF01545	Cation efflux family
AL499_RS10860	PF01022	Bacterial regulatory protein, arsR family
AL499_RS10865	PF13460	NAD(P)H-binding 
AL499_RS10870	PF01238	Phosphomannose isomerase type I
AL499_RS10890	PF00210	Ferritin-like domain
AL499_RS10895	PF01048	Phosphorylase superfamily
AL499_RS10900	PF01791	DeoC/LacD family aldolase
AL499_RS10905	PF00591	Glycosyl transferase family, a/b domain
AL499_RS10905	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AL499_RS10905	PF02885	Glycosyl transferase family, helical bundle domain
AL499_RS10910	PF01676	Metalloenzyme superfamily
AL499_RS10925	PF07670	Nucleoside recognition
AL499_RS10925	PF07664	Ferrous iron transport protein B C terminus
AL499_RS10925	PF17910	FeoB cytosolic helical domain
AL499_RS10925	PF02421	Ferrous iron transport protein B
AL499_RS10930	PF02664	S-Ribosylhomocysteinase (LuxS)
AL499_RS10950	PF03630	Fumble 
AL499_RS10960	PF05066	HB1, ASXL, restriction endonuclease HTH domain
AL499_RS10965	PF00117	Glutamine amidotransferase class-I
AL499_RS10965	PF06418	CTP synthase N-terminus
AL499_RS10975	PF01116	Fructose-bisphosphate aldolase class-II
AL499_RS10980	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL499_RS10990	PF00171	Aldehyde dehydrogenase family
AL499_RS10995	PF07498	Rho termination factor, N-terminal domain
AL499_RS10995	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL499_RS10995	PF07497	Rho termination factor, RNA-binding domain
AL499_RS11000	PF01197	Ribosomal protein L31
AL499_RS11005	PF00265	Thymidine kinase
AL499_RS11010	PF03462	PCRF domain
AL499_RS11010	PF00472	RF-1 domain
AL499_RS11015	PF05175	Methyltransferase small domain
AL499_RS11015	PF17827	PrmC N-terminal domain
AL499_RS11020	PF03481	Putative GTP-binding controlling metal-binding
AL499_RS11020	PF01300	Telomere recombination
AL499_RS11025	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL499_RS11030	PF04260	Protein of unknown function (DUF436) 
AL499_RS11035	PF00464	Serine hydroxymethyltransferase
AL499_RS11050	PF00119	ATP synthase A chain
AL499_RS11055	PF00137	ATP synthase subunit C
AL499_RS11060	PF00430	ATP synthase B/B' CF(0)
AL499_RS11065	PF00213	ATP synthase delta (OSCP) subunit
AL499_RS11070	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL499_RS11070	PF00306	ATP synthase alpha/beta chain, C terminal domain
AL499_RS11070	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL499_RS11075	PF00231	ATP synthase
AL499_RS11080	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL499_RS11080	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL499_RS11085	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AL499_RS11085	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AL499_RS11090	PF06612	Protein of unknown function (DUF1146)
AL499_RS11095	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL499_RS11100	PF07977	FabA-like domain
AL499_RS11105	PF01797	Transposase IS200 like
AL499_RS11115	PF00664	ABC transporter transmembrane region
AL499_RS11115	PF00005	ABC transporter
AL499_RS11130	PF00436	Single-strand binding protein family
AL499_RS11135	PF06737	Transglycosylase-like domain
AL499_RS11140	PF03070	TENA/THI-4/PQQC family
AL499_RS11145	PF08543	Phosphomethylpyrimidine kinase
AL499_RS11150	PF02110	Hydroxyethylthiazole kinase family
AL499_RS11155	PF02581	Thiamine monophosphate synthase
AL499_RS11160	PF02096	60Kd inner membrane protein
AL499_RS11165	PF01966	HD domain
AL499_RS11170	PF13396	Phospholipase_D-nuclease N-terminal
AL499_RS11170	PF13091	PLD-like domain
AL499_RS11175	PF02583	Metal-sensitive transcriptional repressor
AL499_RS11185	PF01098	Cell cycle protein
AL499_RS11190	PF07478	D-ala D-ala ligase C-terminus
AL499_RS11190	PF01820	D-ala D-ala ligase N-terminus
AL499_RS11195	PF02875	Mur ligase family, glutamate ligase domain
AL499_RS11195	PF01225	Mur ligase family, catalytic domain
AL499_RS11195	PF08245	Mur ligase middle domain
AL499_RS11200	PF00270	DEAD/DEAH box helicase
AL499_RS11200	PF00271	Helicase conserved C-terminal domain
AL499_RS11210	PF03703	Bacterial PH domain
AL499_RS11220	PF01648	4'-phosphopantetheinyl transferase superfamily
AL499_RS11225	PF00842	Alanine racemase, C-terminal domain
AL499_RS11225	PF01168	Alanine racemase, N-terminal domain
AL499_RS11235	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system
AL499_RS11240	PF08673	Phosphoserine phosphatase RsbU, N-terminal domain
AL499_RS11240	PF07228	Stage II sporulation protein E (SpoIIE)
AL499_RS11245	PF01740	STAS domain
AL499_RS11250	PF13581	Histidine kinase-like ATPase domain
AL499_RS11255	PF04542	Sigma-70 region 2 
AL499_RS11255	PF04539	Sigma-70 region 3
AL499_RS11255	PF04545	Sigma-70, region 4
AL499_RS11260	PF16921	Tex protein YqgF-like domain
AL499_RS11260	PF09371	Tex-like protein N-terminal domain
AL499_RS11260	PF00575	S1 RNA binding domain
AL499_RS11260	PF17674	HHH domain
AL499_RS11265	PF17283	SprT-like zinc ribbon domain
AL499_RS11265	PF10263	SprT-like family
AL499_RS11300	PF00291	Pyridoxal-phosphate dependent enzyme
AL499_RS11300	PF00585	C-terminal regulatory domain of Threonine dehydratase
AL499_RS11305	PF00694	Aconitase C-terminal domain
AL499_RS11310	PF00330	Aconitase family (aconitate hydratase)
AL499_RS11315	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL499_RS11320	PF00682	HMGL-like
AL499_RS11320	PF08502	LeuA allosteric (dimerisation) domain
AL499_RS11325	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AL499_RS11325	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
AL499_RS11335	PF00205	Thiamine pyrophosphate enzyme, central domain
AL499_RS11335	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL499_RS11335	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL499_RS11340	PF00920	Dehydratase family
AL499_RS11345	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
AL499_RS11350	PF00814	Glycoprotease family
AL499_RS11355	PF00583	Acetyltransferase (GNAT) family
AL499_RS11360	PF00814	Glycoprotease family
AL499_RS11365	PF01624	MutS domain I
AL499_RS11365	PF05190	MutS family domain IV
AL499_RS11365	PF05188	MutS domain II
AL499_RS11365	PF05192	MutS domain III
AL499_RS11365	PF00488	MutS domain V
AL499_RS11370	PF16326	ABC transporter C-terminal domain
AL499_RS11370	PF00005	ABC transporter
AL499_RS11370	PF12848	ABC transporter
AL499_RS11375	PF06971	Putative DNA-binding protein N-terminus
AL499_RS11375	PF02629	CoA binding domain
AL499_RS11385	PF04143	Sulphur transport
AL499_RS11390	PF01206	Sulfurtransferase TusA
AL499_RS11395	PF00909	Ammonium Transporter Family
AL499_RS11400	PF13407	Periplasmic binding protein domain
AL499_RS11400	PF00356	Bacterial regulatory proteins, lacI family
AL499_RS11405	PF08244	Glycosyl hydrolases family 32 C terminal
AL499_RS11405	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AL499_RS11410	PF00294	pfkB family carbohydrate kinase
AL499_RS11415	PF04397	LytTr DNA-binding domain
AL499_RS11415	PF00072	Response regulator receiver domain
AL499_RS11420	PF00989	PAS fold
AL499_RS11420	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL499_RS11420	PF17203	Single cache domain 3
AL499_RS11420	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS11430	PF04647	Accessory gene regulator B
AL499_RS11435	PF00795	Carbon-nitrogen hydrolase
AL499_RS11450	PF02517	CPBP intramembrane metalloprotease
AL499_RS11455	PF00166	Chaperonin 10 Kd subunit
AL499_RS11460	PF00118	TCP-1/cpn60 chaperonin family
AL499_RS11465	PF00589	Phage integrase family
AL499_RS11465	PF14659	Phage integrase, N-terminal SAM-like domain
AL499_RS11535	PF10668	Phage terminase small subunit
AL499_RS11535	PF03592	Terminase small subunit 
AL499_RS11555	PF01497	Periplasmic binding protein
AL499_RS11560	PF04072	Leucine carboxyl methyltransferase
AL499_RS11565	PF00155	Aminotransferase class I and II
AL499_RS11575	PF00392	Bacterial regulatory proteins, gntR family
AL499_RS11580	PF00005	ABC transporter
AL499_RS11590	PF00005	ABC transporter
AL499_RS11625	PF10282	Lactonase, 7-bladed beta-propeller
AL499_RS11630	PF00171	Aldehyde dehydrogenase family
AL499_RS11635	PF01368	DHH family
AL499_RS11635	PF02833	DHHA2 domain
AL499_RS11640	PF00857	Isochorismatase family
AL499_RS11650	PF00939	Sodium:sulfate symporter transmembrane region
AL499_RS11660	PF01842	ACT domain
AL499_RS11660	PF00800	Prephenate dehydratase
AL499_RS11665	PF02898	Nitric oxide synthase, oxygenase domain
AL499_RS11670	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL499_RS11670	PF17956	Nicotinate phosphoribosyltransferase C-terminal domain
AL499_RS11670	PF17767	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
AL499_RS11675	PF02540	NAD synthase
AL499_RS11680	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
AL499_RS11685	PF14044	NETI protein
AL499_RS11690	PF00206	Lyase
AL499_RS11690	PF10397	Adenylosuccinate lyase C-terminus
AL499_RS11695	PF01371	Trp repressor protein
AL499_RS11700	PF01884	PcrB family
AL499_RS11705	PF00580	UvrD/REP helicase N-terminal domain
AL499_RS11705	PF13361	UvrD-like helicase C-terminal domain
AL499_RS11710	PF03120	NAD-dependent DNA ligase OB-fold domain
AL499_RS11710	PF12826	Helix-hairpin-helix motif
AL499_RS11710	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AL499_RS11710	PF01653	NAD-dependent DNA ligase adenylation domain
AL499_RS11710	PF00533	BRCA1 C Terminus (BRCT) domain
AL499_RS11715	PF07537	CamS sex pheromone cAM373 precursor
AL499_RS11725	PF00474	Sodium:solute symporter family
AL499_RS11730	PF02686	Glu-tRNAGln amidotransferase C subunit
AL499_RS11735	PF01425	Amidase
AL499_RS11740	PF02934	GatB/GatE catalytic domain
AL499_RS11740	PF02637	GatB domain
AL499_RS11745	PF00781	Diacylglycerol kinase catalytic domain
AL499_RS11750	PF05958	tRNA (Uracil-5-)-methyltransferase
AL499_RS11765	PF00817	impB/mucB/samB family
AL499_RS11765	PF11799	impB/mucB/samB family C-terminal domain
AL499_RS11775	PF00210	Ferritin-like domain
AL499_RS11780	PF08245	Mur ligase middle domain
AL499_RS11780	PF08353	Domain of unknown function (DUF1727)
AL499_RS11785	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL499_RS11795	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL499_RS11795	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL499_RS11800	PF06081	Aromatic acid exporter family member 1
AL499_RS11805	PF00557	Metallopeptidase family M24
AL499_RS11820	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL499_RS11820	PF07730	Histidine kinase
AL499_RS11825	PF00196	Bacterial regulatory proteins, luxR family
AL499_RS11825	PF00072	Response regulator receiver domain
AL499_RS11830	PF03631	Virulence factor BrkB
AL499_RS11840	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL499_RS11845	PF06569	Protein of unknown function (DUF1128)
AL499_RS11850	PF02073	Thermophilic metalloprotease (M29)
AL499_RS11855	PF03061	Thioesterase superfamily
AL499_RS11860	PF08756	YfkB-like domain
AL499_RS11860	PF04055	Radical SAM superfamily
AL499_RS11865	PF01965	DJ-1/PfpI family
AL499_RS11870	PF00912	Transglycosylase
AL499_RS11875	PF02631	RecX family
AL499_RS11885	PF01476	LysM domain
AL499_RS11885	PF00005	ABC transporter
AL499_RS11895	PF04307	LexA-binding, inner membrane-associated putative hydrolase
AL499_RS11900	PF14815	NUDIX domain
AL499_RS11900	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL499_RS11905	PF04167	Protein of unknown function (DUF402)
AL499_RS11910	PF00005	ABC transporter
AL499_RS11910	PF00664	ABC transporter transmembrane region
AL499_RS11915	PF06081	Aromatic acid exporter family member 1
AL499_RS11920	PF00202	Aminotransferase class-III
AL499_RS11925	PF00578	AhpC/TSA family
AL499_RS11935	PF01475	Ferric uptake regulator family
AL499_RS12100	PF00528	Binding-protein-dependent transport system inner membrane component
AL499_RS12105	PF00005	ABC transporter
AL499_RS12110	PF08331	Domain of unknown function (DUF1730)
AL499_RS12115	PF00588	SpoU rRNA Methylase family
AL499_RS12120	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL499_RS12130	PF10415	Fumarase C C-terminus
AL499_RS12130	PF00206	Lyase
AL499_RS12135	PF01479	S4 domain
AL499_RS12135	PF00849	RNA pseudouridylate synthase
AL499_RS12140	PF13185	GAF domain
AL499_RS12140	PF07730	Histidine kinase
AL499_RS12145	PF00196	Bacterial regulatory proteins, luxR family
AL499_RS12145	PF00072	Response regulator receiver domain
AL499_RS12155	PF04286	Protein of unknown function (DUF445)
AL499_RS12160	PF06133	Control of competence regulator ComK, YlbF/YmcA
AL499_RS12165	PF00149	Calcineurin-like phosphoesterase
AL499_RS12175	PF01966	HD domain
AL499_RS12190	PF00639	PPIC-type PPIASE domain
