A6J61_RS00035	SM00854	Bacterial capsule synthesis protein PGA_cap
A6J61_RS00125	SM00984	UDP binding domain
A6J61_RS00135	SM00098	Alkaline phosphatase homologues
A6J61_RS00145	SM00448	cheY-homologous receiver domain
A6J61_RS00145	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS00150	SM00387	Histidine kinase-like ATPases
A6J61_RS00155	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS00340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS00340	SM00866	A6J61_RS00340
A6J61_RS00600	SM01266	A6J61_RS00600
A6J61_RS00665	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS00720	SM00829	Enoylreductase
A6J61_RS00805	SM01208	A6J61_RS00805
A6J61_RS00875	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS00975	SM00954	Region found in RelA / SpoT proteins
A6J61_RS00985	SM00422	helix_turn_helix, mercury resistance
A6J61_RS00990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS00990	SM00895	A6J61_RS00990
A6J61_RS01030	SM00927	DNA mismatch repair enzyme MutH
A6J61_RS01110	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01115	SM00062	Bacterial periplasmic substrate-binding proteins
A6J61_RS01145	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01155	SM00387	Histidine kinase-like ATPases
A6J61_RS01155	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS01160	SM00448	cheY-homologous receiver domain
A6J61_RS01160	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS01185	SM00829	Enoylreductase
A6J61_RS01190	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J61_RS01190	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01245	SM00448	cheY-homologous receiver domain
A6J61_RS01245	SM00850	LytTr DNA-binding domain
A6J61_RS01250	SM00387	Histidine kinase-like ATPases
A6J61_RS01320	SM00871	Bacterial transcription activator, effector binding domain
A6J61_RS01355	SM00855	Phosphoglycerate mutase family
A6J61_RS01365	SM00062	Bacterial periplasmic substrate-binding proteins
A6J61_RS01365	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A6J61_RS01375	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01415	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01450	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A6J61_RS01475	SM00387	Histidine kinase-like ATPases
A6J61_RS01480	SM00421	helix_turn_helix, Lux Regulon
A6J61_RS01480	SM00448	cheY-homologous receiver domain
A6J61_RS01490	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS01515	SM00342	helix_turn_helix, arabinose operon control protein
A6J61_RS01545	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS01560	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01565	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01600	SM00988	UreE urease accessory protein, N-terminal domain
A6J61_RS01660	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01705	SM00894	Excalibur calcium-binding domain
A6J61_RS01720	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS01730	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS01750	SM00829	Enoylreductase
A6J61_RS01815	SM00850	LytTr DNA-binding domain
A6J61_RS01820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J61_RS01820	SM00387	Histidine kinase-like ATPases
A6J61_RS01820	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS01825	SM00448	cheY-homologous receiver domain
A6J61_RS01825	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS01835	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS01910	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS02025	SM00420	helix_turn_helix, Deoxyribose operon repressor
A6J61_RS02040	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A6J61_RS02040	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A6J61_RS02055	SM00047	Lysozyme subfamily 2
A6J61_RS02100	SM00342	helix_turn_helix, arabinose operon control protein
A6J61_RS02105	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS02120	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02120	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J61_RS02165	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02175	SM00852	Probable molybdopterin binding domain
A6J61_RS02185	SM00852	Probable molybdopterin binding domain
A6J61_RS02210	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS02225	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS02260	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A6J61_RS02260	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A6J61_RS02260	SM00493	A6J61_RS02260
A6J61_RS02275	SM01403	A6J61_RS02275
A6J61_RS02295	SM01382	A6J61_RS02295
A6J61_RS02295	SM01383	A6J61_RS02295
A6J61_RS02310	SM00322	K homology RNA-binding domain
A6J61_RS02330	SM01374	A6J61_RS02330
A6J61_RS02335	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A6J61_RS02390	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS02410	SM00662	RNA polymerases D
A6J61_RS02420	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02425	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02460	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02470	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02525	SM00420	helix_turn_helix, Deoxyribose operon repressor
A6J61_RS02525	SM01134	A6J61_RS02525
A6J61_RS02545	SM01133	A6J61_RS02545
A6J61_RS02570	SM00829	Enoylreductase
A6J61_RS02575	SM00829	Enoylreductase
A6J61_RS02750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A6J61_RS02790	SM01133	A6J61_RS02790
A6J61_RS02795	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A6J61_RS02810	SM00899	A6J61_RS02810
A6J61_RS02890	SM00357	Cold shock protein domain
A6J61_RS02890	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS02890	SM00959	Rho termination factor, N-terminal domain
A6J61_RS02905	SM00937	A6J61_RS02905
A6J61_RS02920	SM00226	Low molecular weight phosphatase family
A6J61_RS02975	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS03040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS03045	SM00155	Phospholipase D. Active site motifs.
A6J61_RS03075	SM00487	DEAD-like helicases superfamily
A6J61_RS03075	SM00490	helicase superfamily c-terminal domain
A6J61_RS03100	SM01005	Alanine racemase, C-terminal domain
A6J61_RS03115	SM00331	Sigma factor PP2C-like phosphatases
A6J61_RS03115	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A6J61_RS03135	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS03135	SM00732	Likely ribonuclease with RNase H fold.
A6J61_RS03140	SM00731	SprT homologues.
A6J61_RS03190	SM01329	A6J61_RS03190
A6J61_RS03195	SM00917	LeuA allosteric (dimerisation) domain
A6J61_RS03240	SM00534	ATPase domain of DNA mismatch repair MUTS family
A6J61_RS03245	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS03250	SM00881	CoA binding domain
A6J61_RS03270	SM00354	helix_turn _helix lactose operon repressor
A6J61_RS03275	SM00640	Glycosyl hydrolases family 32
A6J61_RS03285	SM00448	cheY-homologous receiver domain
A6J61_RS03285	SM00850	LytTr DNA-binding domain
A6J61_RS03295	SM00794	Staphylococcal AgrD protein
A6J61_RS03300	SM00793	Accessory gene regulator B
A6J61_RS03330	SM00883	Chaperonin 10 Kd subunit
A6J61_RS03350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS03355	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS03365	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS03410	SM01131	A6J61_RS03410
A6J61_RS03420	SM00710	Parallel beta-helix repeats
A6J61_RS03465	SM00998	Adenylosuccinate lyase C-terminus
A6J61_RS03485	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J61_RS03485	SM00292	breast cancer carboxy-terminal domain
A6J61_RS03485	SM00532	Ligase N family
A6J61_RS03515	SM00845	GatB domain
A6J61_RS03520	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A6J61_RS03545	SM00479	A6J61_RS03545
A6J61_RS03595	SM00387	Histidine kinase-like ATPases
A6J61_RS03600	SM00421	helix_turn_helix, Lux Regulon
A6J61_RS03600	SM00448	cheY-homologous receiver domain
A6J61_RS03615	SM00226	Low molecular weight phosphatase family
A6J61_RS03675	SM00478	endonuclease III
A6J61_RS03675	SM00525	A6J61_RS03675
A6J61_RS03685	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS03870	SM00062	Bacterial periplasmic substrate-binding proteins
A6J61_RS03870	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A6J61_RS03910	SM00387	Histidine kinase-like ATPases
A6J61_RS03915	SM00421	helix_turn_helix, Lux Regulon
A6J61_RS03915	SM00448	cheY-homologous receiver domain
A6J61_RS03920	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS03945	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS03980	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04070	SM01234	A6J61_RS04070
A6J61_RS04145	SM00047	Lysozyme subfamily 2
A6J61_RS04195	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS04210	SM00450	Rhodanese Homology Domain
A6J61_RS04225	SM00363	S4 RNA-binding domain
A6J61_RS04260	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS04290	SM00843	A6J61_RS04290
A6J61_RS04310	SM00830	Chorismate mutase type II
A6J61_RS04315	SM00354	helix_turn _helix lactose operon repressor
A6J61_RS04320	SM00822	A6J61_RS04320
A6J61_RS04350	SM00363	S4 RNA-binding domain
A6J61_RS04355	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J61_RS04360	SM00563	Phosphate acyltransferases
A6J61_RS04395	SM00363	S4 RNA-binding domain
A6J61_RS04395	SM01390	A6J61_RS04395
A6J61_RS04400	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A6J61_RS04415	SM00981	A6J61_RS04415
A6J61_RS04445	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A6J61_RS04445	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A6J61_RS04455	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS04465	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J61_RS04475	SM00481	DNA polymerase alpha chain like domain
A6J61_RS04480	SM00919	Malic enzyme, NAD binding domain
A6J61_RS04480	SM01274	A6J61_RS04480
A6J61_RS04515	SM01329	A6J61_RS04515
A6J61_RS04520	SM00448	cheY-homologous receiver domain
A6J61_RS04520	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS04525	SM00387	Histidine kinase-like ATPases
A6J61_RS04525	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS04530	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A6J61_RS04530	SM00475	5'-3' exonuclease
A6J61_RS04530	SM00482	DNA polymerase A domain
A6J61_RS04535	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A6J61_RS04535	SM01232	A6J61_RS04535
A6J61_RS04545	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A6J61_RS04550	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS04550	SM00876	Biotin and Thiamin Synthesis associated domain
A6J61_RS04565	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04570	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A6J61_RS04610	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04610	SM00994	ClpX C4-type zinc finger
A6J61_RS04610	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J61_RS04640	SM01004	Delta-aminolevulinic acid dehydratase
A6J61_RS04725	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J61_RS04730	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04745	SM01323	A6J61_RS04745
A6J61_RS04765	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS04765	SM00954	Region found in RelA / SpoT proteins
A6J61_RS04775	SM00287	Bacterial SH3 domain homologues
A6J61_RS04775	SM00646	A6J61_RS04775
A6J61_RS04800	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04825	SM00028	Tetratricopeptide repeats
A6J61_RS04830	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS04845	SM00732	Likely ribonuclease with RNase H fold.
A6J61_RS04880	SM00796	Allophanate hydrolase subunit 1
A6J61_RS04895	SM00878	Biotin carboxylase C-terminal domain
A6J61_RS04930	SM01103	A6J61_RS04930
A6J61_RS04940	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS04955	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J61_RS04980	SM00838	Elongation factor G C-terminus
A6J61_RS04985	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS05005	SM00271	DnaJ molecular chaperone homology domain
A6J61_RS05020	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS05080	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J61_RS05090	SM00400	zinc finger
A6J61_RS05090	SM00493	A6J61_RS05090
A6J61_RS05110	SM00487	DEAD-like helicases superfamily
A6J61_RS05110	SM00490	helicase superfamily c-terminal domain
A6J61_RS05115	SM00518	AP endonuclease family 2
A6J61_RS05120	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS05155	SM00028	Tetratricopeptide repeats
A6J61_RS05175	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS05235	SM00450	Rhodanese Homology Domain
A6J61_RS05260	SM00841	Elongation factor P, C-terminal
A6J61_RS05260	SM01185	A6J61_RS05260
A6J61_RS05270	SM00878	Biotin carboxylase C-terminal domain
A6J61_RS05325	SM00861	Transketolase, pyrimidine binding domain
A6J61_RS05350	SM01350	A6J61_RS05350
A6J61_RS05355	SM00354	helix_turn _helix lactose operon repressor
A6J61_RS05360	SM00642	Alpha-amylase domain
A6J61_RS05365	SM00342	helix_turn_helix, arabinose operon control protein
A6J61_RS05365	SM00871	Bacterial transcription activator, effector binding domain
A6J61_RS05425	SM00363	S4 RNA-binding domain
A6J61_RS05430	SM00448	cheY-homologous receiver domain
A6J61_RS05430	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS05435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J61_RS05435	SM00387	Histidine kinase-like ATPases
A6J61_RS05435	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS05455	SM00487	DEAD-like helicases superfamily
A6J61_RS05455	SM00490	helicase superfamily c-terminal domain
A6J61_RS05460	SM00257	Lysin motif
A6J61_RS05475	SM00870	A6J61_RS05475
A6J61_RS05485	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS05500	SM00411	bacterial (prokaryotic) histone like domain
A6J61_RS05520	SM00562	A6J61_RS05520
A6J61_RS05580	SM00479	A6J61_RS05580
A6J61_RS05580	SM00491	A6J61_RS05580
A6J61_RS05595	SM00478	endonuclease III
A6J61_RS05595	SM00525	A6J61_RS05595
A6J61_RS05635	SM00981	A6J61_RS05635
A6J61_RS05650	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A6J61_RS05650	SM00475	5'-3' exonuclease
A6J61_RS05725	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS05750	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS05760	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A6J61_RS05765	SM01130	A6J61_RS05765
A6J61_RS05785	SM01005	Alanine racemase, C-terminal domain
A6J61_RS05810	SM00357	Cold shock protein domain
A6J61_RS05840	SM00327	von Willebrand factor (vWF) type A domain
A6J61_RS05865	SM00861	Transketolase, pyrimidine binding domain
A6J61_RS05870	SM00387	Histidine kinase-like ATPases
A6J61_RS05870	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS05875	SM00448	cheY-homologous receiver domain
A6J61_RS05875	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS05880	SM00014	Acid phosphatase homologues
A6J61_RS05895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J61_RS05895	SM00245	tail specific protease
A6J61_RS05940	SM00932	Scaffold protein Nfu/NifU N terminal
A6J61_RS05980	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A6J61_RS05990	SM01007	Class II Aldolase and Adducin N-terminal domain
A6J61_RS06060	SM00434	DNA Topoisomerase IV
A6J61_RS06065	SM00387	Histidine kinase-like ATPases
A6J61_RS06065	SM00433	TopoisomeraseII
A6J61_RS06070	SM01207	A6J61_RS06070
A6J61_RS06120	SM00861	Transketolase, pyrimidine binding domain
A6J61_RS06145	SM01240	A6J61_RS06145
A6J61_RS06160	SM01060	A6J61_RS06160
A6J61_RS06210	SM00318	Staphylococcal nuclease homologues
A6J61_RS06225	SM00421	helix_turn_helix, Lux Regulon
A6J61_RS06225	SM00448	cheY-homologous receiver domain
A6J61_RS06240	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06245	SM00155	Phospholipase D. Active site motifs.
A6J61_RS06255	SM01230	A6J61_RS06255
A6J61_RS06260	SM00422	helix_turn_helix, mercury resistance
A6J61_RS06315	SM00853	MutL C terminal dimerisation domain
A6J61_RS06315	SM01340	A6J61_RS06315
A6J61_RS06320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A6J61_RS06320	SM00534	ATPase domain of DNA mismatch repair MUTS family
A6J61_RS06335	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS06375	SM00322	K homology RNA-binding domain
A6J61_RS06375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS06380	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06385	SM00852	Probable molybdopterin binding domain
A6J61_RS06395	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS06420	SM00866	A6J61_RS06420
A6J61_RS06425	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06425	SM00843	A6J61_RS06425
A6J61_RS06430	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS06435	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS06435	SM00322	K homology RNA-binding domain
A6J61_RS06440	SM01387	A6J61_RS06440
A6J61_RS06445	SM00904	Riboflavin kinase
A6J61_RS06475	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS06475	SM00322	K homology RNA-binding domain
A6J61_RS06540	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06540	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J61_RS06560	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A6J61_RS06560	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A6J61_RS06560	SM00493	A6J61_RS06560
A6J61_RS06580	SM00257	Lysin motif
A6J61_RS06585	SM00881	CoA binding domain
A6J61_RS06655	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06655	SM00962	SRP54-type protein, GTPase domain
A6J61_RS06655	SM00963	SRP54-type protein, helical bundle domain
A6J61_RS06665	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS06665	SM00962	SRP54-type protein, GTPase domain
A6J61_RS06665	SM00963	SRP54-type protein, helical bundle domain
A6J61_RS06670	SM00968	SMC proteins Flexible Hinge Domain
A6J61_RS06675	SM00358	Double-stranded RNA binding motif
A6J61_RS06675	SM00535	Ribonuclease III family
A6J61_RS06685	SM00822	A6J61_RS06685
A6J61_RS06690	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A6J61_RS06705	SM00487	DEAD-like helicases superfamily
A6J61_RS06705	SM00490	helicase superfamily c-terminal domain
A6J61_RS06710	SM01120	A6J61_RS06710
A6J61_RS06710	SM01121	A6J61_RS06710
A6J61_RS06725	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A6J61_RS06740	SM00220	Serine/Threonine protein kinases, catalytic domain
A6J61_RS06740	SM00740	A6J61_RS06740
A6J61_RS06745	SM00331	Sigma factor PP2C-like phosphatases
A6J61_RS06745	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A6J61_RS06770	SM00487	DEAD-like helicases superfamily
A6J61_RS06770	SM00490	helicase superfamily c-terminal domain
A6J61_RS06780	SM01409	A6J61_RS06780
A6J61_RS06785	SM00072	Guanylate kinase homologues.
A6J61_RS06810	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A6J61_RS06815	SM00851	MGS-like domain
A6J61_RS06815	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A6J61_RS06815	SM01209	A6J61_RS06815
A6J61_RS06820	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A6J61_RS06845	SM00363	S4 RNA-binding domain
A6J61_RS06870	SM00363	S4 RNA-binding domain
A6J61_RS06895	SM00864	Tubulin/FtsZ family, GTPase domain
A6J61_RS06895	SM00865	Tubulin/FtsZ family, C-terminal domain
A6J61_RS06900	SM00842	Cell division protein FtsA
A6J61_RS06920	SM00740	A6J61_RS06920
A6J61_RS06990	SM00465	GIY-YIG type nucleases (URI domain)
A6J61_RS07000	SM00463	Small MutS-related domain
A6J61_RS07000	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A6J61_RS07000	SM00534	ATPase domain of DNA mismatch repair MUTS family
A6J61_RS07005	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J61_RS07005	SM00481	DNA polymerase alpha chain like domain
A6J61_RS07005	SM00483	DNA polymerase X family
A6J61_RS07030	SM00873	B3/4 domain
A6J61_RS07030	SM00874	tRNA synthetase B5 domain
A6J61_RS07030	SM00896	Ferredoxin-fold anticodon binding domain
A6J61_RS07040	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A6J61_RS07115	SM00878	Biotin carboxylase C-terminal domain
A6J61_RS07140	SM00838	Elongation factor G C-terminus
A6J61_RS07190	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07195	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS07215	SM00861	Transketolase, pyrimidine binding domain
A6J61_RS07240	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS07290	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07300	SM01209	A6J61_RS07300
A6J61_RS07300	SM01210	A6J61_RS07300
A6J61_RS07305	SM00798	AICARFT/IMPCHase bienzyme
A6J61_RS07305	SM00851	MGS-like domain
A6J61_RS07330	SM01211	A6J61_RS07330
A6J61_RS07350	SM01001	AIR carboxylase
A6J61_RS07425	SM00047	Lysozyme subfamily 2
A6J61_RS07425	SM00644	A6J61_RS07425
A6J61_RS07430	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS07515	SM00914	A6J61_RS07515
A6J61_RS07545	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J61_RS07585	SM00422	helix_turn_helix, mercury resistance
A6J61_RS07615	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J61_RS07615	SM00924	MgtE intracellular N domain
A6J61_RS07630	SM00954	Region found in RelA / SpoT proteins
A6J61_RS07640	SM01118	A6J61_RS07640
A6J61_RS07690	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07695	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07715	SM00825	Beta-ketoacyl synthase
A6J61_RS07730	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07730	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J61_RS07815	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A6J61_RS07825	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS07835	SM01298	A6J61_RS07835
A6J61_RS07905	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07910	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07915	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS07945	SM00823	Phosphopantetheine attachment site
A6J61_RS08040	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J61_RS08230	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08260	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08260	SM00930	A6J61_RS08260
A6J61_RS08270	SM00493	A6J61_RS08270
A6J61_RS08310	SM00855	Phosphoglycerate mutase family
A6J61_RS08415	SM00450	Rhodanese Homology Domain
A6J61_RS08420	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS08475	SM01192	A6J61_RS08475
A6J61_RS08475	SM01193	A6J61_RS08475
A6J61_RS08495	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A6J61_RS08585	SM00257	Lysin motif
A6J61_RS08590	SM00937	A6J61_RS08590
A6J61_RS08595	SM00957	SecA DEAD-like domain
A6J61_RS08595	SM00958	SecA preprotein cross-linking domain
A6J61_RS08600	SM00644	A6J61_RS08600
A6J61_RS08615	SM00487	DEAD-like helicases superfamily
A6J61_RS08615	SM00490	helicase superfamily c-terminal domain
A6J61_RS08635	SM00267	diguanylate cyclase
A6J61_RS08690	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08710	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08755	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A6J61_RS08785	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08790	SM00341	Helicase and RNase D C-terminal
A6J61_RS08790	SM00487	DEAD-like helicases superfamily
A6J61_RS08790	SM00490	helicase superfamily c-terminal domain
A6J61_RS08790	SM00956	A6J61_RS08790
A6J61_RS08795	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS08810	SM00797	Allophanate hydrolase subunit 2
A6J61_RS08815	SM00796	Allophanate hydrolase subunit 1
A6J61_RS08865	SM01091	Transporter associated domain
A6J61_RS08880	SM00420	helix_turn_helix, Deoxyribose operon repressor
A6J61_RS08880	SM01134	A6J61_RS08880
A6J61_RS08930	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A6J61_RS08935	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS09015	SM00342	helix_turn_helix, arabinose operon control protein
A6J61_RS09025	SM00257	Lysin motif
A6J61_RS09045	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09050	SM00387	Histidine kinase-like ATPases
A6J61_RS09055	SM00448	cheY-homologous receiver domain
A6J61_RS09055	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS09100	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09135	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09170	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09195	SM00529	Helix-turn-helix diphteria tox regulatory element
A6J61_RS09195	SM00899	A6J61_RS09195
A6J61_RS09200	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09325	SM00422	helix_turn_helix, mercury resistance
A6J61_RS09330	SM00478	endonuclease III
A6J61_RS09335	SM00836	DALR anticodon binding domain
A6J61_RS09335	SM01016	Arginyl tRNA synthetase N terminal dom
A6J61_RS09355	SM00829	Enoylreductase
A6J61_RS09365	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J61_RS09470	SM00986	Uracil DNA glycosylase superfamily
A6J61_RS09470	SM00987	UreE urease accessory protein, C-terminal domain 
A6J61_RS09505	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A6J61_RS09575	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A6J61_RS09575	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A6J61_RS09635	SM00838	Elongation factor G C-terminus
A6J61_RS09635	SM00889	Elongation factor G, domain IV
A6J61_RS09655	SM00663	RNA polymerase I subunit A N-terminus
A6J61_RS09685	SM00649	Ribosomal protein L11/L12
A6J61_RS09690	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A6J61_RS09690	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A6J61_RS09715	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A6J61_RS09720	SM00535	Ribonuclease III family
A6J61_RS09725	SM00840	A6J61_RS09725
A6J61_RS09740	SM00670	Large family of predicted nucleotide-binding domains
A6J61_RS09745	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09750	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09750	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J61_RS09785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS09870	SM00905	Dihydroneopterin aldolase
A6J61_RS09890	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS09900	SM00977	TilS substrate C-terminal domain
A6J61_RS09905	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J61_RS09915	SM00363	S4 RNA-binding domain
A6J61_RS09930	SM00487	DEAD-like helicases superfamily
A6J61_RS09930	SM00490	helicase superfamily c-terminal domain
A6J61_RS09930	SM00982	A6J61_RS09930
A6J61_RS09930	SM01058	CarD-like/TRCF domain
A6J61_RS09945	SM01400	A6J61_RS09945
A6J61_RS09980	SM00650	Ribosomal RNA adenine dimethylases
A6J61_RS09985	SM00493	A6J61_RS09985
A6J61_RS10005	SM00465	GIY-YIG type nucleases (URI domain)
A6J61_RS10075	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J61_RS10075	SM00493	A6J61_RS10075
A6J61_RS10085	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS10100	SM00866	A6J61_RS10100
A6J61_RS10105	SM00642	Alpha-amylase domain
A6J61_RS10155	SM00257	Lysin motif
A6J61_RS10170	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10170	SM00930	A6J61_RS10170
A6J61_RS10180	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10215	SM00014	Acid phosphatase homologues
A6J61_RS10240	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A6J61_RS10245	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS10250	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS10265	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J61_RS10265	SM01240	A6J61_RS10265
A6J61_RS10330	SM00855	Phosphoglycerate mutase family
A6J61_RS10410	SM00470	ParB-like nuclease domain
A6J61_RS10460	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10480	SM00387	Histidine kinase-like ATPases
A6J61_RS10480	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS10490	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10495	SM00448	cheY-homologous receiver domain
A6J61_RS10495	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS10505	SM00640	Glycosyl hydrolases family 32
A6J61_RS10510	SM00354	helix_turn _helix lactose operon repressor
A6J61_RS10545	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10560	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS10565	SM00062	Bacterial periplasmic substrate-binding proteins
A6J61_RS10585	SM00829	Enoylreductase
A6J61_RS10605	SM00470	ParB-like nuclease domain
A6J61_RS10615	SM01228	A6J61_RS10615
A6J61_RS10635	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10635	SM00760	Bacterial dnaA protein helix-turn-helix domain
A6J61_RS10640	SM00480	DNA polymerase III beta subunit
A6J61_RS10655	SM00387	Histidine kinase-like ATPases
A6J61_RS10655	SM00433	TopoisomeraseII
A6J61_RS10660	SM00434	DNA Topoisomerase IV
A6J61_RS10695	SM00267	diguanylate cyclase
A6J61_RS10710	SM00788	Adenylosuccinate synthetase
A6J61_RS10725	SM00448	cheY-homologous receiver domain
A6J61_RS10725	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS10730	SM00091	PAS domain
A6J61_RS10730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J61_RS10730	SM00387	Histidine kinase-like ATPases
A6J61_RS10730	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS10770	SM00849	Metallo-beta-lactamase superfamily
A6J61_RS10785	SM00344	helix_turn_helix ASNC type
A6J61_RS10830	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10865	SM00387	Histidine kinase-like ATPases
A6J61_RS10870	SM00448	cheY-homologous receiver domain
A6J61_RS10870	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS10885	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS10900	SM00823	Phosphopantetheine attachment site
A6J61_RS10955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J61_RS10955	SM00866	A6J61_RS10955
A6J61_RS10965	SM01133	A6J61_RS10965
A6J61_RS10995	SM00448	cheY-homologous receiver domain
A6J61_RS10995	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS11000	SM00387	Histidine kinase-like ATPases
A6J61_RS11000	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS11025	SM00725	NEAr Transporter domain
A6J61_RS11040	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11045	SM00725	NEAr Transporter domain
A6J61_RS11050	SM00725	NEAr Transporter domain
A6J61_RS11055	SM00725	NEAr Transporter domain
A6J61_RS11070	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11085	SM00047	Lysozyme subfamily 2
A6J61_RS11115	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS11135	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11165	SM00420	helix_turn_helix, Deoxyribose operon repressor
A6J61_RS11165	SM01134	A6J61_RS11165
A6J61_RS11170	SM00855	Phosphoglycerate mutase family
A6J61_RS11175	SM00387	Histidine kinase-like ATPases
A6J61_RS11175	SM00388	His Kinase A (phosphoacceptor) domain
A6J61_RS11180	SM00448	cheY-homologous receiver domain
A6J61_RS11180	SM00862	Transcriptional regulatory protein, C terminal
A6J61_RS11215	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11235	SM00346	helix_turn_helix isocitrate lyase regulation
A6J61_RS11250	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A6J61_RS11265	SM00422	helix_turn_helix, mercury resistance
A6J61_RS11270	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A6J61_RS11290	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11325	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11330	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11430	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A6J61_RS11450	SM00357	Cold shock protein domain
A6J61_RS11460	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A6J61_RS11515	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11560	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11565	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11575	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS11585	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS11595	SM00867	YceI-like domain 
A6J61_RS11670	SM00900	A6J61_RS11670
A6J61_RS11705	SM00861	Transketolase, pyrimidine binding domain
A6J61_RS11760	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J61_RS11785	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS11825	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS11845	SM00506	Appr-1"-p processing enzyme
A6J61_RS11905	SM01130	A6J61_RS11905
A6J61_RS11995	SM00450	Rhodanese Homology Domain
A6J61_RS12025	SM00382	ATPases associated with a variety of cellular activities
A6J61_RS12035	SM00530	Helix-turn-helix XRE-family like proteins 
A6J61_RS12070	SM00047	Lysozyme subfamily 2
