locus-tag	class	description
HOQ69_gp028	COG1705	Flagellar rod assembly protein muramidase FlgJ
HOQ69_gp028	COG3942	CHAP domain
HOQ69_gp030	COG0584	glycerophosphoryl diester phosphodiesterase
HOQ69_gp042	COG1201	RNA secondary structure unwinding
HOQ69_gp044	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
HOQ69_gp045	COG0420	3'-5' exonuclease activity
HOQ69_gp047	COG0419	ATPase involved in DNA repair
HOQ69_gp053	COG1780	Probably involved in ribonucleotide reductase function
HOQ69_gp054	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HOQ69_gp055	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HOQ69_gp064	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HOQ69_gp064	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HOQ69_gp068	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
HOQ69_gp177	COG1388	LysM domain
HOQ69_gp177	COG5632	N-Acetylmuramoyl-L-alanine amidase
HOQ69_gp183	COG1388	LysM domain