locus_tag old_locus_tag gene Name start end strand product note type ID NCBI KMD28_gp01 PFS2_001 KMD28_gp01 57 362 + P27 family terminase small subunit Member of Terminase_4 superfamily gene gene-KMD28_gp01 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp01 KMD28_gp02 PFS2_002 KMD28_gp02 352 2043 + terminase large subunit Member of Terminase_1 superfamily gene gene-KMD28_gp02 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp02 KMD28_gp03 PFS2_003 KMD28_gp03 2048 3286 + portal protein Member of Phage_portal superfamily gene gene-KMD28_gp03 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp03 KMD28_gp04 PFS2_004 KMD28_gp04 3270 4043 + Clp protease ClpP Caseinolytic protease (ClpP). Member of crotonase-like superfamily. gene gene-KMD28_gp04 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp04 KMD28_gp05 PFS2_005 KMD28_gp05 4055 5218 + major capsid protein Member of Phage_capsid superfamily gene gene-KMD28_gp05 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp05 KMD28_gp06 PFS2_006 KMD28_gp06 5287 5565 + head-tail connector protein Phage gp6-like head-tail connector protein. Member of gp6_gp15_like superfamily. gene gene-KMD28_gp06 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp06 KMD28_gp07 PFS2_007 KMD28_gp07 5577 5909 + hypothetical protein gene gene-KMD28_gp07 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp07 KMD28_gp08 PFS2_008 KMD28_gp08 5906 6307 + hypothetical protein gene gene-KMD28_gp08 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp08 KMD28_gp09 PFS2_009 KMD28_gp09 6308 6703 + DUF3168 domain-containing protein DUF3168 domain-containing protein gene gene-KMD28_gp09 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp09 KMD28_gp10 PFS2_010 KMD28_gp10 6738 7379 + tail protein Phage tail tube protein. Member of Phage_TTP_1 superfamily. gene gene-KMD28_gp10 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp10 KMD28_gp11 PFS2_011 KMD28_gp11 7471 7926 + Ig-like domain-containing protein Similar to PNZ60421.1. Residues 64-150 contain YjdB%2C Ig-like domain. gene gene-KMD28_gp11 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp11 KMD28_gp12 PFS2_012 KMD28_gp12 7984 8334 + hypothetical protein gene gene-KMD28_gp12 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp12 KMD28_gp13 PFS2_013 KMD28_gp13 8376 8534 + hypothetical protein gene gene-KMD28_gp13 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp13 KMD28_gp14 PFS2_014 KMD28_gp14 8548 14748 + tail tape measure protein gene gene-KMD28_gp14 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp14 KMD28_gp15 PFS2_015 KMD28_gp15 14748 15572 + tail family protein Member of Sipho_tail superfamily gene gene-KMD28_gp15 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp15 KMD28_gp16 PFS2_016 KMD28_gp16 15581 17164 + tail protein Member of Prophage_tail superfamily. Members of this family are probably acting as endopeptidases. gene gene-KMD28_gp16 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp16 KMD28_gp17 PFS2_017 KMD28_gp17 17164 17454 + hypothetical protein Member of PRK07360 superfamily gene gene-KMD28_gp17 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp17 KMD28_gp18 PFS2_018 KMD28_gp18 17470 19380 + minor structural protein Identical to WP_000429551.1 gene gene-KMD28_gp18 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp18 KMD28_gp19 PFS2_019 KMD28_gp19 19380 20846 + BppU family baseplate upper protein Member of DUF2479 superfamily. gene gene-KMD28_gp19 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp19 KMD28_gp20 PFS2_020 KMD28_gp20 20846 21235 + DUF2977 domain-containing protein Member of DUF2977 superfamily. gene gene-KMD28_gp20 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp20 KMD28_gp21 PFS2_021 KMD28_gp21 21228 21392 + XkdX family protein Member of Phage_XkdX superfamily gene gene-KMD28_gp21 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp21 KMD28_gp22 PFS2_022 KMD28_gp22 21438 21737 + DUF2951 domain-containing protein Member of DUF2951 superfamily gene gene-KMD28_gp22 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp22 KMD28_gp23 PFS2_023 KMD28_gp23 21873 22175 + holin Member of Holin_SPP1 superfamily gene gene-KMD28_gp23 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp23 KMD28_gp24 PFS2_024 KMD28_gp24 22187 23641 + N-acetylmuramoyl-L-alanine amidase N-acetylmuramoyl-L-alanine amidase%2C putative phage lysin. Member of AmiC superfamily. gene gene-KMD28_gp24 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp24 KMD28_gp25 PFS2_025 KMD28_gp25 24486 25691 - site-specific integrase Member of XerC superfamily gene gene-KMD28_gp25 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp25 KMD28_gp26 PFS2_026 KMD28_gp26 25817 26431 + ATPase gene gene-KMD28_gp26 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp26 KMD28_gp27 PFS2_027 KMD28_gp27 26805 27401 - hypothetical protein Member of GvpG superfamily gene gene-KMD28_gp27 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp27 KMD28_gp28 PFS2_028 KMD28_gp28 27458 28087 - XRE family transcriptional regulator Putative phage repressor protein C. interval 9-66 belongs to HTH_XRE superfamily and interval 80-209 to COG2932 superfamily. gene gene-KMD28_gp28 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp28 KMD28_gp29 PFS2_029 KMD28_gp29 28241 28468 + helix-turn-helix transcriptional regulator Member of HTH_XRE superfamily. gene gene-KMD28_gp29 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp29 KMD28_gp30 PFS2_030 KMD28_gp30 28491 29267 + Rha family transcriptional regulator Phage regulatory protein Rha. Member of Phage_pRha superfamily. gene gene-KMD28_gp30 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp30 KMD28_gp31 PFS2_031 KMD28_gp31 29296 29439 + hypothetical protein gene gene-KMD28_gp31 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp31 KMD28_gp32 PFS2_032 KMD28_gp32 29429 29638 - hypothetical protein gene gene-KMD28_gp32 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp32 KMD28_gp33 PFS2_033 KMD28_gp33 29694 29939 + DUF2829 domain-containing protein Member of DUF2829 superfamily. gene gene-KMD28_gp33 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp33 KMD28_gp34 PFS2_034 KMD28_gp34 29908 30273 - hypothetical protein gene gene-KMD28_gp34 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp34 KMD28_gp35 PFS2_035 KMD28_gp35 30328 30543 + hypothetical protein gene gene-KMD28_gp35 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp35 KMD28_gp36 PFS2_036 KMD28_gp36 30568 30831 + helix-turn-helix domain-containing protein Member of HTH superfamily. gene gene-KMD28_gp36 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp36 KMD28_gp37 PFS2_037 KMD28_gp37 30995 31333 + putative transcriptional regulator gene gene-KMD28_gp37 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp37 KMD28_gp38 PFS2_038 KMD28_gp38 31398 31700 + DUF2482 family protein Member of DUF2482 superfamily. gene gene-KMD28_gp38 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp38 KMD28_gp39 PFS2_039 KMD28_gp39 31705 31965 + DUF1108 family protein Member of DUF1108 superfamily gene gene-KMD28_gp39 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp39 KMD28_gp40 PFS2_040 KMD28_gp40 31978 32514 + host-nuclease inhibitor Gam family protein Member of Phage_Mu_Gam superfamily gene gene-KMD28_gp40 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp40 KMD28_gp41 PFS2_041 KMD28_gp41 32515 33294 + ATP-binding protein Member of P-loop_NTPase superfamily gene gene-KMD28_gp41 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp41 KMD28_gp42 PFS2_042 KMD28_gp42 33324 33878 + single-stranded DNA-binding protein Ssb. Member of RPA_2b-aaRSs_OBF_like superfamily. gene gene-KMD28_gp42 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp42 KMD28_gp43 PFS2_043 KMD28_gp43 33891 34562 + hypothetical protein Putative HNHc nuclease. Member of HNHc_6 superfamily. gene gene-KMD28_gp43 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp43 KMD28_gp44 PFS2_044 KMD28_gp44 34555 35310 + DnaD domain protein Residues 153-225 constitute DnaD domain. Putative DNA replication protein DnaD. gene gene-KMD28_gp44 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp44 KMD28_gp45 PFS2_045 KMD28_gp45 35310 35666 + hypothetical protein gene gene-KMD28_gp45 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp45 KMD28_gp46 PFS2_046 KMD28_gp46 35663 36904 + AAA family ATPase gene gene-KMD28_gp46 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp46 KMD28_gp47 PFS2_047 KMD28_gp47 36901 37116 + hypothetical protein gene gene-KMD28_gp47 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp47 KMD28_gp48 PFS2_048 KMD28_gp48 37119 37340 + DUF3269 family protein Member of DUF3269 superfamily. gene gene-KMD28_gp48 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp48 KMD28_gp49 PFS2_049 KMD28_gp49 37351 37755 + DUF1064 domain-containing protein Member of DUF1064 superfamily. gene gene-KMD28_gp49 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp49 KMD28_gp50 PFS2_050 KMD28_gp50 37760 37945 + DUF3113 family protein Member of DUF3113 superfamily. gene gene-KMD28_gp50 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp50 KMD28_gp51 PFS2_051 KMD28_gp51 37946 38305 + protein Member of PVL ORF-50-like superfamily. Putative PVL (Panton-Valentine leukocidin). gene gene-KMD28_gp51 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp51 KMD28_gp52 PFS2_052 KMD28_gp52 38305 38562 + DUF3310 domain-containing protein Amino acids 18-75 belong to DUF3310 superfamily. gene gene-KMD28_gp52 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp52 KMD28_gp53 PFS2_053 KMD28_gp53 38565 38765 + hypothetical protein Member of DUF1129 superfamily. Putative membrane-anchored protein. gene gene-KMD28_gp53 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp53 KMD28_gp54 PFS2_054 KMD28_gp54 38780 39022 + phi PVL orf 51-like protein Member of Phage_Orf51 superfamily. gene gene-KMD28_gp54 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp54 KMD28_gp55 PFS2_055 KMD28_gp55 39031 39402 + hypothetical protein gene gene-KMD28_gp55 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp55 KMD28_gp56 PFS2_056 KMD28_gp56 39395 39643 + DUF1024 family protein Member of DUF1024 superfamily. gene gene-KMD28_gp56 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp56 KMD28_gp57 PFS2_057 KMD28_gp57 39636 40172 + dUTPase Dut2 dimeric dUTPase. Member of NTP-PPase_dUTPase superfamily. gene gene-KMD28_gp57 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp57 KMD28_gp58 PFS2_058 KMD28_gp58 40209 40445 + DUF1381 domain-containing protein Member of DUF1381 Superfamily. gene gene-KMD28_gp58 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp58 KMD28_gp59 PFS2_059 KMD28_gp59 40470 40706 + hypothetical protein gene gene-KMD28_gp59 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp59 KMD28_gp60 PFS2_060 KMD28_gp60 40696 41082 + DUF1523 family protein Member of DUF1523 superfamily gene gene-KMD28_gp60 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp60 KMD28_gp61 PFS2_061 KMD28_gp61 41082 41234 + transcriptional regulator Member of RinB superfamily. gene gene-KMD28_gp61 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp61 KMD28_gp62 PFS2_062 KMD28_gp62 41302 41502 + DUF1514 family protein gene gene-KMD28_gp62 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp62 KMD28_gp63 PFS2_063 KMD28_gp63 41554 41733 + hypothetical protein Similar to N-terminus of F420_gp38%2C Staphylococcus phage SMSAP5 virulence-associated protein E. gene gene-KMD28_gp63 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp63 KMD28_gp64 PFS2_064 KMD28_gp64 41742 42137 + hypothetical protein Identical to C-terminus of F420_gp38%2C Staphylococcus phage SMSAP5 virulence-associated protein E. gene gene-KMD28_gp64 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp64 KMD28_gp65 PFS2_065 KMD28_gp65 42478 42768 + VRR-NUC domain-containing protein Member of VRR_NUC superfamily. gene gene-KMD28_gp65 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp65 KMD28_gp66 PFS2_066 KMD28_gp66 42758 44116 + DEAD/DEAH box helicase Member of SNF2_N superfamily. gene gene-KMD28_gp66 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp66 KMD28_gp67 PFS2_067 KMD28_gp67 44129 44566 + transcriptional regulator Phage transcriptional activator%2C RinA family. Member of DUF722 superfamily. gene gene-KMD28_gp67 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp67 KMD28_gp68 PFS2_068 KMD28_gp68 44723 45037 + HNH endonuclease Member of HNHc superfamily. gene gene-KMD28_gp68 http://www.ncbi.nlm.nih.gov/gene/?term=KMD28_gp68