locus-tag	class	description
DNJ55_RS00025	COG3623	hexulose-6-phosphate isomerase
DNJ55_RS00030	COG0235	Class ii aldolase
DNJ55_RS00050	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DNJ55_RS00055	COG0494	nUDIX hydrolase
DNJ55_RS00060	COG1506	peptidase
DNJ55_RS00065	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
DNJ55_RS00070	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DNJ55_RS00080	COG0656	L-ascorbic acid biosynthetic process
DNJ55_RS00085	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNJ55_RS00090	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DNJ55_RS00100	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DNJ55_RS00125	COG5632	N-Acetylmuramoyl-L-alanine amidase
DNJ55_RS00125	COG4193	domain, Protein
DNJ55_RS00125	COG3266	domain, Protein
DNJ55_RS00135	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DNJ55_RS00135	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DNJ55_RS00140	COG0307	riboflavin synthase, alpha
DNJ55_RS00145	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DNJ55_RS00145	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DNJ55_RS00150	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DNJ55_RS00165	COG2267	carboxylic ester hydrolase activity
DNJ55_RS00170	COG0039	L-malate dehydrogenase activity
DNJ55_RS00180	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
DNJ55_RS00185	COG1242	4 iron, 4 sulfur cluster binding
DNJ55_RS00190	COG2814	Major facilitator Superfamily
DNJ55_RS00195	COG0495	leucyl-tRNA aminoacylation
DNJ55_RS00200	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DNJ55_RS00205	COG2081	HI0933 family
DNJ55_RS00210	COG2244	polysaccharide biosynthetic process
DNJ55_RS00215	COG1187	pseudouridine synthase activity
DNJ55_RS00225	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DNJ55_RS00230	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DNJ55_RS00235	COG0510	thiamine kinase activity
DNJ55_RS00240	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DNJ55_RS00245	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DNJ55_RS00255	COG1363	Peptidase, m42
DNJ55_RS00260	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DNJ55_RS00265	COG4848	Belongs to the UPF0354 family
DNJ55_RS00270	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DNJ55_RS00275	COG1674	ftsk spoiiie
DNJ55_RS00280	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DNJ55_RS00285	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
DNJ55_RS00295	COG1605	Chorismate mutase
DNJ55_RS00295	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DNJ55_RS00300	COG1609	Transcriptional regulator
DNJ55_RS00310	COG0454	-acetyltransferase
DNJ55_RS00315	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DNJ55_RS00320	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DNJ55_RS00325	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DNJ55_RS00335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DNJ55_RS00340	COG0204	Acyl-transferase
DNJ55_RS00350	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DNJ55_RS00355	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DNJ55_RS00360	COG1764	response to oxidative stress
DNJ55_RS00395	COG0456	acetyltransferase
DNJ55_RS00425	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DNJ55_RS00430	COG1956	GAF domain-containing protein
DNJ55_RS00435	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
DNJ55_RS00440	COG1104	cysteine desulfurase activity
DNJ55_RS00445	COG0301	tRNA thio-modification
DNJ55_RS00455	COG0616	signal peptide processing
DNJ55_RS00460	COG1714	RDD family
DNJ55_RS00465	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
DNJ55_RS00470	COG0827	DNA restriction-modification system
DNJ55_RS00475	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DNJ55_RS00480	COG0589	response to stress
DNJ55_RS00485	COG0686	Belongs to the AlaDH PNT family
DNJ55_RS00495	COG0006	proline dipeptidase activity
DNJ55_RS00500	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DNJ55_RS00510	COG4109	DRTGG domain
DNJ55_RS00515	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DNJ55_RS00520	COG0587	DNA-directed DNA polymerase activity
DNJ55_RS00525	COG0281	malic enzyme
DNJ55_RS00530	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DNJ55_RS00535	COG0825	malonyl-CoA metabolic process
DNJ55_RS00540	COG0205	6-phosphofructokinase activity
DNJ55_RS00545	COG0469	pyruvate kinase activity
DNJ55_RS00550	COG0372	Belongs to the citrate synthase family
DNJ55_RS00555	COG0538	isocitrate dehydrogenase activity
DNJ55_RS00560	COG0745	RESPONSE REGULATOR receiver
DNJ55_RS00565	COG5002	protein histidine kinase activity
DNJ55_RS00570	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNJ55_RS00570	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNJ55_RS00580	COG0237	dephospho-CoA kinase activity
DNJ55_RS00595	COG3611	Membrane attachment protein
DNJ55_RS00600	COG1484	DNA-dependent DNA replication
DNJ55_RS00605	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DNJ55_RS00610	COG0833	amino acid
DNJ55_RS00620	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DNJ55_RS00625	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DNJ55_RS00630	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DNJ55_RS00645	COG0544	peptidyl-prolyl cis-trans isomerase activity
DNJ55_RS00655	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DNJ55_RS00660	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DNJ55_RS00670	COG0181	hydroxymethylbilane synthase activity
DNJ55_RS00685	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DNJ55_RS00695	COG2818	Glycosylase
DNJ55_RS00700	COG0525	valine-tRNA ligase activity
DNJ55_RS00705	COG0285	dihydrofolate synthase activity
DNJ55_RS00715	COG2003	Belongs to the UPF0758 family
DNJ55_RS00750	COG2868	ribosomal protein
DNJ55_RS00760	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DNJ55_RS00770	COG0632	four-way junction helicase activity
DNJ55_RS00780	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DNJ55_RS00790	COG1862	Preprotein translocase
DNJ55_RS00795	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DNJ55_RS00795	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DNJ55_RS00800	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DNJ55_RS00800	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
DNJ55_RS00805	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DNJ55_RS00815	COG1490	D-aminoacyl-tRNA deacylase activity
DNJ55_RS00820	COG0860	N-Acetylmuramoyl-L-alanine amidase
DNJ55_RS00830	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DNJ55_RS00840	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DNJ55_RS00845	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DNJ55_RS00850	COG1959	2 iron, 2 sulfur cluster binding
DNJ55_RS00870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DNJ55_RS00875	COG1104	cysteine desulfurase activity
DNJ55_RS00880	COG0482	sulfurtransferase activity
DNJ55_RS00890	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DNJ55_RS00895	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DNJ55_RS00900	COG4472	Bacterial protein of unknown function (DUF965)
DNJ55_RS00905	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DNJ55_RS00910	COG3906	Belongs to the UPF0473 family
DNJ55_RS00915	COG4122	O-methyltransferase activity
DNJ55_RS00920	COG0826	peptidase U32
DNJ55_RS00925	COG0826	peptidase U32
DNJ55_RS00930	COG0572	uridine kinase
DNJ55_RS00940	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DNJ55_RS00945	COG1984	allophanate hydrolase subunit 2
DNJ55_RS00950	COG0511	ligase activity, forming carbon-carbon bonds
DNJ55_RS00955	COG0439	Biotin carboxylase
DNJ55_RS00960	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
DNJ55_RS00965	COG1914	H( )-stimulated, divalent metal cation uptake system
DNJ55_RS00970	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DNJ55_RS00975	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
DNJ55_RS00980	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
DNJ55_RS00985	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DNJ55_RS00990	COG1534	Rna-binding protein
DNJ55_RS01000	COG1713	HD superfamily hydrolase involved in NAD metabolism
DNJ55_RS01005	COG0799	negative regulation of ribosome biogenesis
DNJ55_RS01010	COG2226	methyltransferase
DNJ55_RS01015	COG1596	polysaccharide export
DNJ55_RS01015	COG1555	photosystem II stabilization
DNJ55_RS01020	COG2131	deaminase
DNJ55_RS01025	COG0658	competence protein
DNJ55_RS01025	COG2333	competence protein COMEC
DNJ55_RS01030	COG1466	dna polymerase III delta subunit
DNJ55_RS01035	COG0268	Binds directly to 16S ribosomal RNA
DNJ55_RS01045	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DNJ55_RS01060	COG0443	Heat shock 70 kDa protein
DNJ55_RS01065	COG0484	heat shock protein binding
DNJ55_RS01070	COG2264	protein methyltransferase activity
DNJ55_RS01075	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DNJ55_RS01080	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DNJ55_RS01095	COG1030	water channel activity
DNJ55_RS01100	COG4864	UPF0365 protein
DNJ55_RS01110	COG1702	phosphate starvation-inducible protein PhoH
DNJ55_RS01120	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DNJ55_RS01130	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DNJ55_RS01135	COG1381	Involved in DNA repair and RecF pathway recombination
DNJ55_RS01140	COG0423	glycine-tRNA ligase activity
DNJ55_RS01145	COG0517	IMP dehydrogenase activity
DNJ55_RS01150	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DNJ55_RS01155	COG0358	DNA primase activity
DNJ55_RS01160	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DNJ55_RS01165	COG2384	SAM-dependent methyltransferase
DNJ55_RS01170	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DNJ55_RS01175	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DNJ55_RS01180	COG0513	Belongs to the DEAD box helicase family
DNJ55_RS01185	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
DNJ55_RS01190	COG1121	(ABC) transporter
DNJ55_RS01195	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DNJ55_RS01200	COG0735	belongs to the Fur family
DNJ55_RS01205	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DNJ55_RS01215	COG0768	penicillin binding
DNJ55_RS01220	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DNJ55_RS01225	COG0573	inorganic phosphate transmembrane transporter activity
DNJ55_RS01230	COG0581	inorganic phosphate transmembrane transporter activity
DNJ55_RS01235	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DNJ55_RS01240	COG0704	Plays a role in the regulation of phosphate uptake
DNJ55_RS01250	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DNJ55_RS01255	COG0457	Tetratricopeptide repeat
DNJ55_RS01255	COG0705	Rhomboid family
DNJ55_RS01260	COG4483	Protein conserved in bacteria
DNJ55_RS01265	COG1940	carbohydrate kinase activity
DNJ55_RS01270	COG0011	TIGRFAM Protein of
DNJ55_RS01275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DNJ55_RS01285	COG0582	viral genome integration into host DNA
DNJ55_RS01455	COG0740	serine-type endopeptidase activity
DNJ55_RS01545	COG4824	toxin secretion phage lysis holin
DNJ55_RS01580	COG3969	phosphoadenosine phosphosulfate
DNJ55_RS01585	COG1475	DNA binding
DNJ55_RS01620	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DNJ55_RS01625	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DNJ55_RS01635	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DNJ55_RS01640	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DNJ55_RS01645	COG0095	Lipoate-protein ligase
DNJ55_RS01660	COG0006	proline dipeptidase activity
DNJ55_RS01665	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DNJ55_RS01670	COG0511	ligase activity, forming carbon-carbon bonds
DNJ55_RS01675	COG0439	Biotin carboxylase
DNJ55_RS01680	COG1302	Protein conserved in bacteria
DNJ55_RS01690	COG1570	exodeoxyribonuclease VII activity
DNJ55_RS01695	COG1722	exodeoxyribonuclease VII activity
DNJ55_RS01700	COG0142	geranyltranstransferase activity
DNJ55_RS01705	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DNJ55_RS01710	COG1438	arginine binding
DNJ55_RS01715	COG0497	DNA recombination
DNJ55_RS01720	COG0280	phosphate acetyltransferase
DNJ55_RS01725	COG3426	butyrate kinase activity
DNJ55_RS01730	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DNJ55_RS01735	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DNJ55_RS01740	COG0022	dehydrogenase e1 component
DNJ55_RS01745	COG0508	dehydrogenase complex catalyzes the overall conversion of
DNJ55_RS01755	COG4129	membrane
DNJ55_RS01765	COG2195	Cleaves the N-terminal amino acid of tripeptides
DNJ55_RS01795	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DNJ55_RS01800	COG1234	tRNA 3'-trailer cleavage
DNJ55_RS01805	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DNJ55_RS01815	COG0667	Aldo Keto reductase
DNJ55_RS01820	COG0494	nUDIX hydrolase
DNJ55_RS01825	COG0735	belongs to the Fur family
DNJ55_RS01840	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DNJ55_RS01845	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DNJ55_RS01850	COG1187	pseudouridine synthase activity
DNJ55_RS01855	COG0745	RESPONSE REGULATOR receiver
DNJ55_RS01870	COG1141	Ferredoxin
DNJ55_RS01880	COG0514	ATP-dependent DNA helicase (RecQ)
DNJ55_RS01890	COG0492	ferredoxin-NADP+ reductase activity
DNJ55_RS01895	COG0252	asparaginase activity
DNJ55_RS01905	COG0539	negative regulation of cytoplasmic translation
DNJ55_RS01910	COG1160	GTP binding
DNJ55_RS01915	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DNJ55_RS01935	COG0142	geranyltranstransferase activity
DNJ55_RS01940	COG0105	UTP biosynthetic process
DNJ55_RS01950	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DNJ55_RS01960	COG0457	Tetratricopeptide repeat
DNJ55_RS01965	COG5582	Belongs to the UPF0302 family
DNJ55_RS01970	COG4347	Protein of unknown function (DUF1405)
DNJ55_RS01980	COG1694	Mazg nucleotide pyrophosphohydrolase
DNJ55_RS01985	COG0438	transferase activity, transferring glycosyl groups
DNJ55_RS01990	COG0617	tRNA 3'-terminal CCA addition
DNJ55_RS02005	COG0017	Asparaginyl-tRNA synthetase
DNJ55_RS02010	COG3935	DnaD domain protein
DNJ55_RS02015	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DNJ55_RS02025	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DNJ55_RS02025	COG4499	WXG100 protein secretion system (Wss), protein YukC
DNJ55_RS02040	COG4474	Belongs to the UPF0398 family
DNJ55_RS02045	COG3599	regulation of cell shape
DNJ55_RS02055	COG0116	Belongs to the methyltransferase superfamily
DNJ55_RS02060	COG2962	Rard protein
DNJ55_RS02065	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
DNJ55_RS02070	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNJ55_RS02080	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DNJ55_RS02090	COG1413	lyase activity
DNJ55_RS02135	COG0793	Belongs to the peptidase S41A family
DNJ55_RS02145	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DNJ55_RS02150	COG0671	phosphoesterase, PA-phosphatase related
DNJ55_RS02160	COG5002	protein histidine kinase activity
DNJ55_RS02165	COG0567	Dehydrogenase, E1 component
DNJ55_RS02190	COG0714	Associated with various cellular activities
DNJ55_RS02195	COG4548	von Willebrand factor, type A
DNJ55_RS02200	COG1114	Component of the transport system for branched-chain amino acids
DNJ55_RS02205	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DNJ55_RS02215	COG3853	Toxic anion resistance protein (TelA)
DNJ55_RS02235	COG1278	Cold shock
DNJ55_RS02255	COG1473	amidohydrolase
DNJ55_RS02260	COG2171	N-acyltransferase activity
DNJ55_RS02265	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DNJ55_RS02270	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DNJ55_RS02275	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DNJ55_RS02280	COG0488	(ABC) transporter
DNJ55_RS02285	COG2996	Protein conserved in bacteria
DNJ55_RS02315	COG1363	Peptidase, m42
DNJ55_RS02320	COG0287	Prephenate dehydrogenase
DNJ55_RS02325	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DNJ55_RS02335	COG1942	4-Oxalocrotonate Tautomerase
DNJ55_RS02360	COG0628	permease
DNJ55_RS02370	COG3711	transcriptional antiterminator
DNJ55_RS02375	COG1115	amino acid carrier protein
DNJ55_RS02380	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DNJ55_RS02390	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DNJ55_RS02395	COG4841	protein insertion into membrane
DNJ55_RS02400	COG0824	Thioesterase
DNJ55_RS02410	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DNJ55_RS02415	COG1970	mechanosensitive ion channel activity
DNJ55_RS02420	COG0419	ATPase involved in DNA repair
DNJ55_RS02425	COG0420	3'-5' exonuclease activity
DNJ55_RS02430	COG4846	Membrane protein involved in cytochrome C biogenesis
DNJ55_RS02435	COG3763	UPF0154 protein
DNJ55_RS02445	COG4224	UPF0291 protein
DNJ55_RS02455	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DNJ55_RS02465	COG0516	GMP reductase activity
DNJ55_RS02470	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DNJ55_RS02480	COG0833	amino acid
DNJ55_RS02495	COG0083	homoserine kinase activity
DNJ55_RS02500	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DNJ55_RS02505	COG0460	homoserine dehydrogenase
DNJ55_RS02510	COG0527	aspartate kinase activity
DNJ55_RS02530	COG1525	nuclease
DNJ55_RS02560	COG0584	glycerophosphoryl diester phosphodiesterase
DNJ55_RS02585	COG0789	Transcriptional regulator
DNJ55_RS02590	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
DNJ55_RS02595	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DNJ55_RS02600	COG0386	Belongs to the glutathione peroxidase family
DNJ55_RS02605	COG2267	carboxylic ester hydrolase activity
DNJ55_RS02610	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DNJ55_RS02615	COG1923	regulation of RNA biosynthetic process
DNJ55_RS02620	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DNJ55_RS02630	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DNJ55_RS02635	COG1619	proteins homologs of microcin C7 resistance protein MccF
DNJ55_RS02640	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
DNJ55_RS02645	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DNJ55_RS02665	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DNJ55_RS02675	COG1013	pyruvate-flavodoxin oxidoreductase activity
DNJ55_RS02680	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DNJ55_RS02680	COG0674	pyruvate-flavodoxin oxidoreductase activity
DNJ55_RS02685	COG1692	metallophosphoesterase
DNJ55_RS02705	COG1418	mRNA catabolic process
DNJ55_RS02710	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DNJ55_RS02715	COG1058	Belongs to the CinA family
DNJ55_RS02715	COG1546	Belongs to the CinA family
DNJ55_RS02735	COG0300	oxidoreductase activity
DNJ55_RS02740	COG0612	Peptidase, M16
DNJ55_RS02745	COG0612	Peptidase, M16
DNJ55_RS02750	COG2188	Transcriptional regulator
DNJ55_RS02765	COG1185	polyribonucleotide nucleotidyltransferase activity
DNJ55_RS02775	COG0196	riboflavin kinase activity
DNJ55_RS02780	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DNJ55_RS02785	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DNJ55_RS02795	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DNJ55_RS02800	COG1358	cellular component organization or biogenesis
DNJ55_RS02805	COG2740	Nucleic-acid-binding protein implicated in transcription termination
DNJ55_RS02810	COG0195	Participates in both transcription termination and antitermination
DNJ55_RS02815	COG0779	Required for maturation of 30S ribosomal subunits
DNJ55_RS02825	COG0442	prolyl-tRNA aminoacylation
DNJ55_RS02835	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DNJ55_RS02840	COG4589	Belongs to the CDS family
DNJ55_RS02850	COG0233	cytoplasmic translational termination
DNJ55_RS02855	COG0528	UMP kinase activity
DNJ55_RS02860	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DNJ55_RS02865	COG0052	Belongs to the universal ribosomal protein uS2 family
DNJ55_RS02870	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
DNJ55_RS02875	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DNJ55_RS02880	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DNJ55_RS02885	COG4974	Belongs to the 'phage' integrase family
DNJ55_RS02890	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DNJ55_RS02895	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DNJ55_RS02900	COG0758	DNA mediated transformation
DNJ55_RS02910	COG0045	succinate-CoA ligase (ADP-forming) activity
DNJ55_RS02920	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DNJ55_RS02935	COG4485	Bacterial membrane protein, YfhO
DNJ55_RS02975	COG0336	Belongs to the RNA methyltransferase TrmD family
DNJ55_RS02980	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DNJ55_RS02985	COG0228	four-way junction DNA binding
DNJ55_RS03040	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DNJ55_RS03045	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
DNJ55_RS03050	COG0552	protein localization to endoplasmic reticulum
DNJ55_RS03055	COG1196	nuclear chromosome segregation
DNJ55_RS03060	COG0571	ribonuclease III activity
DNJ55_RS03065	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DNJ55_RS03080	COG0416	fatty acid biosynthetic process
DNJ55_RS03085	COG1349	DNA-binding transcription factor activity
DNJ55_RS03095	COG1760	l-serine dehydratase
DNJ55_RS03100	COG1760	l-serine dehydratase
DNJ55_RS03110	COG1302	Protein conserved in bacteria
DNJ55_RS03125	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DNJ55_RS03130	COG1162	GTPase activity
DNJ55_RS03140	COG2124	cytochrome p450
DNJ55_RS03155	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DNJ55_RS03160	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DNJ55_RS03160	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DNJ55_RS03165	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DNJ55_RS03170	COG0242	peptide deformylase activity
DNJ55_RS03175	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DNJ55_RS03180	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DNJ55_RS03200	COG1758	RNA polymerase activity
DNJ55_RS03220	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DNJ55_RS03225	COG0284	orotidine-5'-phosphate decarboxylase activity
DNJ55_RS03230	COG0167	dihydroorotate dehydrogenase activity
DNJ55_RS03240	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DNJ55_RS03245	COG0505	Belongs to the CarA family
DNJ55_RS03265	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DNJ55_RS03270	COG0564	pseudouridine synthase activity
DNJ55_RS03275	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DNJ55_RS03280	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DNJ55_RS03285	COG3599	regulation of cell shape
DNJ55_RS03295	COG0673	inositol 2-dehydrogenase activity
DNJ55_RS03300	COG4409	exo-alpha-(2->6)-sialidase activity
DNJ55_RS03310	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNJ55_RS03315	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DNJ55_RS03325	COG4975	Glucose uptake
DNJ55_RS03330	COG1869	D-ribose catabolic process
DNJ55_RS03335	COG0762	integral membrane protein
DNJ55_RS03340	COG1799	cell septum assembly
DNJ55_RS03345	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DNJ55_RS03355	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DNJ55_RS03360	COG0849	cell division
DNJ55_RS03370	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DNJ55_RS03380	COG0768	penicillin binding
DNJ55_RS03385	COG4839	cell division protein FtsL
DNJ55_RS03390	COG0275	rRNA processing
DNJ55_RS03395	COG2001	Belongs to the MraZ family
DNJ55_RS03400	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
DNJ55_RS03405	COG0454	-acetyltransferase
DNJ55_RS03410	COG1011	Hydrolase
DNJ55_RS03425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DNJ55_RS03460	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DNJ55_RS03465	COG0783	Belongs to the Dps family
DNJ55_RS03510	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DNJ55_RS03515	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DNJ55_RS03520	COG1053	succinate dehydrogenase
DNJ55_RS03525	COG2009	succinate dehydrogenase
DNJ55_RS03530	COG0322	excinuclease ABC activity
DNJ55_RS03535	COG3118	belongs to the thioredoxin family
DNJ55_RS03540	COG1193	negative regulation of DNA recombination
DNJ55_RS03545	COG1796	DNA polymerase
DNJ55_RS03545	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DNJ55_RS03560	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DNJ55_RS03575	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DNJ55_RS03580	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DNJ55_RS03585	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DNJ55_RS03605	COG0742	ribosomal rna small subunit methyltransferase
DNJ55_RS03615	COG4471	UPF0298 protein
DNJ55_RS03620	COG0584	glycerophosphoryl diester phosphodiesterase
DNJ55_RS03625	COG3679	Belongs to the UPF0342 family
DNJ55_RS03640	COG0109	protoheme IX farnesyltransferase activity
DNJ55_RS03675	COG0772	Belongs to the SEDS family
DNJ55_RS03680	COG4838	Belongs to the UPF0358 family
DNJ55_RS03685	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DNJ55_RS03690	COG4896	Protein conserved in bacteria
DNJ55_RS03695	COG1902	pentaerythritol trinitrate reductase activity
DNJ55_RS03700	COG1217	gtp-binding protein TYPA
DNJ55_RS03710	COG0483	inositol monophosphate 1-phosphatase activity
DNJ55_RS03715	COG4493	Belongs to the UPF0637 family
DNJ55_RS03730	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DNJ55_RS03735	COG1177	transmembrane transport
DNJ55_RS03750	COG3842	ATPase activity
DNJ55_RS03760	COG4476	Belongs to the UPF0223 family
DNJ55_RS03800	COG5503	Protein of unknown function (DUF1447)
DNJ55_RS03805	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DNJ55_RS03810	COG0569	domain protein
DNJ55_RS03815	COG1294	oxidase, subunit
DNJ55_RS03820	COG1271	oxidase subunit
DNJ55_RS03825	COG1393	Belongs to the ArsC family
DNJ55_RS03835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DNJ55_RS03840	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DNJ55_RS03850	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DNJ55_RS03865	COG4172	Belongs to the ABC transporter superfamily
DNJ55_RS03875	COG0151	Belongs to the GarS family
DNJ55_RS03880	COG0138	bifunctional purine biosynthesis protein purh
DNJ55_RS03890	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DNJ55_RS03895	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DNJ55_RS03905	COG0047	phosphoribosylformylglycinamidine synthase activity
DNJ55_RS03910	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DNJ55_RS03915	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DNJ55_RS03920	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DNJ55_RS03925	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DNJ55_RS03930	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DNJ55_RS03935	COG1017	nitric oxide dioxygenase activity
DNJ55_RS03935	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DNJ55_RS03945	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DNJ55_RS03955	COG1845	cytochrome c oxidase, subunit III
DNJ55_RS03960	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DNJ55_RS03970	COG3212	peptidase
DNJ55_RS03985	COG1134	teichoic acid transport
DNJ55_RS03995	COG1682	transport, permease protein
DNJ55_RS04005	COG1215	transferase activity, transferring glycosyl groups
DNJ55_RS04015	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DNJ55_RS04020	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DNJ55_RS04025	COG1316	TRANSCRIPTIONal
DNJ55_RS04050	COG3594	Acyltransferase
DNJ55_RS04055	COG0436	Aminotransferase
DNJ55_RS04060	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
DNJ55_RS04070	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
DNJ55_RS04075	COG1169	isochorismate synthase
DNJ55_RS04080	COG1575	Belongs to the MenA family. Type 1 subfamily
DNJ55_RS04085	COG0390	transport system, permease component
DNJ55_RS04090	COG4619	ABC transporter
DNJ55_RS04110	COG4873	Protein conserved in bacteria
DNJ55_RS04190	COG2378	regulation of single-species biofilm formation
DNJ55_RS04210	COG2226	methyltransferase
DNJ55_RS04250	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DNJ55_RS04250	COG0551	DNA topoisomerase type I activity
DNJ55_RS04295	COG0737	Belongs to the 5'-nucleotidase family
DNJ55_RS04305	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DNJ55_RS04310	COG1696	Membrane protein involved in D-alanine export
DNJ55_RS04320	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
DNJ55_RS04325	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DNJ55_RS04330	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DNJ55_RS04335	COG0861	Integral membrane protein TerC family
DNJ55_RS04340	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DNJ55_RS04350	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DNJ55_RS04355	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DNJ55_RS04360	COG2814	Major facilitator Superfamily
DNJ55_RS04370	COG3715	PTS system
DNJ55_RS04375	COG3716	PTS system mannose fructose sorbose family IID component
DNJ55_RS04380	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DNJ55_RS04385	COG2382	esterase
DNJ55_RS04390	COG1115	amino acid carrier protein
DNJ55_RS04395	COG0628	permease
DNJ55_RS04405	COG0475	glutathione-regulated potassium exporter activity
DNJ55_RS04405	COG0569	domain protein
DNJ55_RS04410	COG2239	Acts as a magnesium transporter
DNJ55_RS04415	COG0564	pseudouridine synthase activity
DNJ55_RS04425	COG2357	RelA SpoT domain protein
DNJ55_RS04440	COG2346	COG2346, Truncated hemoglobins
DNJ55_RS04445	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DNJ55_RS04455	COG1164	Oligoendopeptidase f
DNJ55_RS04480	COG1393	Belongs to the ArsC family
DNJ55_RS04485	COG0180	Tryptophanyl-tRNA synthetase
DNJ55_RS04490	COG4166	transmembrane transport
DNJ55_RS04495	COG4608	Belongs to the ABC transporter superfamily
DNJ55_RS04500	COG0444	Belongs to the ABC transporter superfamily
DNJ55_RS04505	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DNJ55_RS04510	COG0601	transmembrane transport
DNJ55_RS04535	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
DNJ55_RS04555	COG0561	phosphatase activity
DNJ55_RS04560	COG0446	pyridine nucleotide-disulphide oxidoreductase
DNJ55_RS04570	COG0179	Fumarylacetoacetate (FAA) hydrolase
DNJ55_RS04580	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
DNJ55_RS04595	COG0166	Belongs to the GPI family
DNJ55_RS04600	COG0137	argininosuccinate synthase activity
DNJ55_RS04610	COG0584	glycerophosphoryl diester phosphodiesterase
DNJ55_RS04625	COG1012	belongs to the aldehyde dehydrogenase family
DNJ55_RS04630	COG1098	S1 RNA binding domain
DNJ55_RS04640	COG1278	Cold shock
DNJ55_RS04660	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DNJ55_RS04670	COG2111	Na H antiporter
DNJ55_RS04670	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DNJ55_RS04675	COG2111	Na H antiporter
DNJ55_RS04680	COG1006	Multisubunit Na H antiporter MnhC subunit
DNJ55_RS04685	COG0651	ATP synthesis coupled electron transport
DNJ55_RS04690	COG1863	multisubunit Na H antiporter MnhE subunit
DNJ55_RS04695	COG2212	antiporter activity
DNJ55_RS04700	COG1320	monovalent cation:proton antiporter activity
DNJ55_RS04710	COG2056	Na+-H+ antiporter family
DNJ55_RS04715	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DNJ55_RS04720	COG1252	NADH dehydrogenase
DNJ55_RS04725	COG0316	Belongs to the HesB IscA family
DNJ55_RS04730	COG4844	belongs to the
DNJ55_RS04735	COG1252	NADH dehydrogenase
DNJ55_RS04740	COG4837	Protein of unknown function (DUF1462)
DNJ55_RS04745	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DNJ55_RS04750	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DNJ55_RS04755	COG0647	UMP catabolic process
DNJ55_RS04760	COG2445	Protein of unknown function DUF86
DNJ55_RS04770	COG4470	Protein conserved in bacteria
DNJ55_RS04775	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DNJ55_RS04780	COG0737	Belongs to the 5'-nucleotidase family
DNJ55_RS04785	COG0730	response to heat
DNJ55_RS04790	COG1801	Protein of unknown function DUF72
DNJ55_RS04805	COG1253	flavin adenine dinucleotide binding
DNJ55_RS04815	COG0719	Fe-S assembly protein
DNJ55_RS04820	COG0822	iron-sulfur transferase activity
DNJ55_RS04830	COG0719	Fe-S assembly protein
DNJ55_RS04835	COG0396	ATPase activity
DNJ55_RS04845	COG1464	Belongs to the NlpA lipoprotein family
DNJ55_RS04850	COG1464	Belongs to the NlpA lipoprotein family
DNJ55_RS04855	COG2011	ABC-type metal ion transport system permease component
DNJ55_RS04865	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DNJ55_RS04870	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DNJ55_RS04880	COG1393	Belongs to the ArsC family
DNJ55_RS04885	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DNJ55_RS04895	COG0710	3-dehydroquinate dehydratase activity
DNJ55_RS04905	COG1764	response to oxidative stress
DNJ55_RS04920	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DNJ55_RS04940	COG0346	lactoylglutathione lyase activity
DNJ55_RS04970	COG0557	exoribonuclease II activity
DNJ55_RS04975	COG1647	Serine aminopeptidase, S33
DNJ55_RS04980	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DNJ55_RS04990	COG0148	phosphopyruvate hydratase activity
DNJ55_RS04995	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DNJ55_RS05025	COG1090	epimerase
DNJ55_RS05035	COG0740	serine-type endopeptidase activity
DNJ55_RS05045	COG1481	regulation of sporulation
DNJ55_RS05050	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DNJ55_RS05055	COG1660	Displays ATPase and GTPase activities
DNJ55_RS05070	COG0110	maltose O-acetyltransferase activity
DNJ55_RS05075	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DNJ55_RS05080	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
DNJ55_RS05115	COG0653	protein targeting
DNJ55_RS05130	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
DNJ55_RS05140	COG1739	Uncharacterized protein family UPF0029
DNJ55_RS05145	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DNJ55_RS05165	COG2195	Cleaves the N-terminal amino acid of tripeptides
DNJ55_RS05170	COG1929	Belongs to the glycerate kinase type-1 family
DNJ55_RS05175	COG3118	belongs to the thioredoxin family
DNJ55_RS05190	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DNJ55_RS05200	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DNJ55_RS05205	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DNJ55_RS05240	COG3104	oligopeptide transport
DNJ55_RS05245	COG3104	oligopeptide transport
DNJ55_RS05260	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DNJ55_RS05265	COG1174	glycine betaine transport
DNJ55_RS05270	COG1125	glycine betaine transport
DNJ55_RS05270	COG0517	IMP dehydrogenase activity
DNJ55_RS05275	COG0514	ATP-dependent DNA helicase (RecQ)
DNJ55_RS05280	COG0488	(ABC) transporter
DNJ55_RS05300	COG0463	Glycosyl transferase, family 2
DNJ55_RS05305	COG1368	sulfuric ester hydrolase activity
DNJ55_RS05315	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DNJ55_RS05335	COG0512	Glutamine amidotransferase of anthranilate synthase
DNJ55_RS05345	COG0720	synthase
DNJ55_RS05350	COG0602	queuosine metabolic process
DNJ55_RS05365	COG0463	Glycosyl transferase, family 2
DNJ55_RS05370	COG1253	flavin adenine dinucleotide binding
DNJ55_RS05375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DNJ55_RS05375	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DNJ55_RS05375	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DNJ55_RS05380	COG1105	Belongs to the carbohydrate kinase PfkB family
DNJ55_RS05385	COG1349	DNA-binding transcription factor activity
DNJ55_RS05405	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DNJ55_RS05410	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS05430	COG0039	L-malate dehydrogenase activity
DNJ55_RS05450	COG4989	oxidoreductase activity
DNJ55_RS05455	COG0523	cobalamin synthesis protein
DNJ55_RS05465	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DNJ55_RS05470	COG4988	ABC transporter
DNJ55_RS05475	COG1968	undecaprenyl-diphosphatase activity
DNJ55_RS05485	COG1671	Belongs to the UPF0178 family
DNJ55_RS05490	COG1611	Belongs to the LOG family
DNJ55_RS05520	COG2839	Protein conserved in bacteria
DNJ55_RS05525	COG2814	Major facilitator Superfamily
DNJ55_RS05530	COG0583	DNA-binding transcription factor activity
DNJ55_RS05545	COG0217	transcriptional regulatory protein
DNJ55_RS05550	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DNJ55_RS05555	COG2022	thiamine diphosphate biosynthetic process
DNJ55_RS05565	COG0352	thiamine-phosphate diphosphorylase activity
DNJ55_RS05575	COG3942	CHAP domain
DNJ55_RS05575	COG1388	LysM domain
DNJ55_RS05580	COG0306	phosphate transporter
DNJ55_RS05585	COG1392	Phosphate transport regulator
DNJ55_RS05590	COG0577	efflux transmembrane transporter activity
DNJ55_RS05595	COG1136	(ABC) transporter
DNJ55_RS05605	COG0745	RESPONSE REGULATOR receiver
DNJ55_RS05610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DNJ55_RS05615	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DNJ55_RS05625	COG3949	Membrane
DNJ55_RS05630	COG0477	Major facilitator Superfamily
DNJ55_RS05640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS05645	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS05650	COG1120	ATPase activity
DNJ55_RS05655	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DNJ55_RS05660	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DNJ55_RS05680	COG1132	(ABC) transporter
DNJ55_RS05685	COG1686	Belongs to the peptidase S11 family
DNJ55_RS05700	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DNJ55_RS05705	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS05710	COG1682	transport, permease protein
DNJ55_RS05720	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
DNJ55_RS05735	COG1475	DNA binding
DNJ55_RS05740	COG0019	diaminopimelate decarboxylase activity
DNJ55_RS05750	COG4264	IucA IucC family
DNJ55_RS05755	COG4264	IucA IucC family
DNJ55_RS05760	COG2814	Major facilitator Superfamily
DNJ55_RS05765	COG4264	IucA IucC family
DNJ55_RS05770	COG2423	ornithine cyclodeaminase activity
DNJ55_RS05780	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DNJ55_RS05785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS05790	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS05800	COG1121	(ABC) transporter
DNJ55_RS05805	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DNJ55_RS05810	COG0803	Belongs to the bacterial solute-binding protein 9 family
DNJ55_RS05815	COG1320	monovalent cation:proton antiporter activity
DNJ55_RS05820	COG2212	antiporter activity
DNJ55_RS05825	COG1863	multisubunit Na H antiporter MnhE subunit
DNJ55_RS05835	COG1006	Multisubunit Na H antiporter MnhC subunit
DNJ55_RS05840	COG2111	Na H antiporter
DNJ55_RS05845	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DNJ55_RS05845	COG2111	Na H antiporter
DNJ55_RS05895	COG0546	phosphoglycolate phosphatase activity
DNJ55_RS05900	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS05905	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DNJ55_RS05910	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DNJ55_RS05915	COG0805	protein transport
DNJ55_RS05920	COG0018	arginyl-trna synthetase
DNJ55_RS05935	COG1078	dGTPase activity
DNJ55_RS05945	COG4844	belongs to the
DNJ55_RS06040	COG0741	lytic transglycosylase activity
DNJ55_RS06040	COG0791	NLP P60 protein
DNJ55_RS06070	COG2946	Replication initiation factor
DNJ55_RS06080	COG1674	ftsk spoiiie
DNJ55_RS06110	COG0471	metal ion transport
DNJ55_RS06140	COG0095	Lipoate-protein ligase
DNJ55_RS06160	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DNJ55_RS06165	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DNJ55_RS06175	COG2814	Major facilitator Superfamily
DNJ55_RS06180	COG1566	PFAM secretion protein HlyD family protein
DNJ55_RS06190	COG2311	Membrane
DNJ55_RS06205	COG2363	Small membrane protein
DNJ55_RS06235	COG0183	Belongs to the thiolase family
DNJ55_RS06240	COG0318	PFAM AMP-dependent synthetase and ligase
DNJ55_RS06245	COG0588	phosphoglycerate mutase activity
DNJ55_RS06270	COG1131	(ABC) transporter
DNJ55_RS06275	COG1994	Peptidase M50
DNJ55_RS06280	COG0535	radical SAM domain protein
DNJ55_RS06310	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DNJ55_RS06320	COG2814	Major facilitator Superfamily
DNJ55_RS06330	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DNJ55_RS06340	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
DNJ55_RS06355	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DNJ55_RS06355	COG2190	(PTS) system
DNJ55_RS06355	COG1263	PTS System
DNJ55_RS06370	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DNJ55_RS06375	COG1469	GTP cyclohydrolase I activity
DNJ55_RS06380	COG1136	(ABC) transporter
DNJ55_RS06380	COG0577	efflux transmembrane transporter activity
DNJ55_RS06395	COG0561	phosphatase activity
DNJ55_RS06405	COG1428	Deoxynucleoside kinase
DNJ55_RS06410	COG1428	Deoxynucleoside kinase
DNJ55_RS06415	COG0546	phosphoglycolate phosphatase activity
DNJ55_RS06445	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DNJ55_RS06455	COG1473	amidohydrolase
DNJ55_RS06460	COG3527	Alpha-acetolactate decarboxylase
DNJ55_RS06465	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DNJ55_RS06470	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DNJ55_RS06475	COG0049	tRNA binding
DNJ55_RS06480	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DNJ55_RS06490	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DNJ55_RS06495	COG0085	RNA polymerase activity
DNJ55_RS06500	COG2813	Specifically methylates the guanine in position
DNJ55_RS06510	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DNJ55_RS06515	COG0081	regulation of translation
DNJ55_RS06520	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DNJ55_RS06525	COG0250	Participates in transcription elongation, termination and antitermination
DNJ55_RS06530	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DNJ55_RS06535	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DNJ55_RS06555	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
DNJ55_RS06560	COG0215	cysteine-tRNA ligase activity
DNJ55_RS06565	COG1045	serine acetyltransferase
DNJ55_RS06570	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DNJ55_RS06580	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DNJ55_RS06585	COG4956	integral membrane protein (PIN domain superfamily)
DNJ55_RS06590	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DNJ55_RS06625	COG0542	response to heat
DNJ55_RS06630	COG3869	Catalyzes the specific phosphorylation of arginine residues in
DNJ55_RS06635	COG3880	PFAM UvrB UvrC protein
DNJ55_RS06645	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DNJ55_RS06655	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
DNJ55_RS06660	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
DNJ55_RS06665	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DNJ55_RS06670	COG1289	transmembrane transporter activity
DNJ55_RS06760	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DNJ55_RS06770	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DNJ55_RS06785	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DNJ55_RS06790	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DNJ55_RS06805	COG1098	S1 RNA binding domain
DNJ55_RS06815	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DNJ55_RS06820	COG3956	TIGRFAM MazG family protein
DNJ55_RS06825	COG2244	polysaccharide biosynthetic process
DNJ55_RS06830	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DNJ55_RS06835	COG0193	aminoacyl-tRNA hydrolase activity
DNJ55_RS06845	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DNJ55_RS06850	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DNJ55_RS06855	COG2088	sporulation resulting in formation of a cellular spore
DNJ55_RS06860	COG0251	oxidation-reduction process
DNJ55_RS06865	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DNJ55_RS06870	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DNJ55_RS06875	COG4466	Protein conserved in bacteria
DNJ55_RS06885	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DNJ55_RS06890	COG0084	hydrolase, TatD family'
DNJ55_RS06900	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DNJ55_RS06905	COG2827	Endonuclease containing a URI domain
DNJ55_RS06910	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
DNJ55_RS06915	COG4467	Involved in initiation control of chromosome replication
DNJ55_RS06920	COG1774	PSP1 C-terminal conserved region
DNJ55_RS06925	COG0470	DNA polymerase III
DNJ55_RS06930	COG3870	Protein conserved in bacteria
DNJ55_RS06935	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DNJ55_RS06940	COG1982	Orn Lys Arg decarboxylase major
DNJ55_RS06965	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DNJ55_RS06970	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DNJ55_RS06975	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DNJ55_RS06980	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
DNJ55_RS06990	COG2188	Transcriptional regulator
DNJ55_RS06995	COG0366	Alpha amylase catalytic
DNJ55_RS07000	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DNJ55_RS07000	COG1263	PTS System
DNJ55_RS07010	COG0493	'glutamate synthase
DNJ55_RS07015	COG0067	glutamate synthase
DNJ55_RS07015	COG0070	glutamate synthase
DNJ55_RS07015	COG0069	glutamate synthase activity
DNJ55_RS07020	COG0583	DNA-binding transcription factor activity
DNJ55_RS07035	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DNJ55_RS07050	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DNJ55_RS07060	COG0535	radical SAM domain protein
DNJ55_RS07065	COG1131	(ABC) transporter
DNJ55_RS07110	COG0626	cystathionine gamma-synthase activity
DNJ55_RS07115	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DNJ55_RS07120	COG2272	Belongs to the type-B carboxylesterase lipase family
DNJ55_RS07125	COG0733	neurotransmitter:sodium symporter activity
DNJ55_RS07135	COG0745	RESPONSE REGULATOR receiver
DNJ55_RS07140	COG2205	protein histidine kinase activity
DNJ55_RS07150	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DNJ55_RS07155	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DNJ55_RS07170	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DNJ55_RS07175	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DNJ55_RS07175	COG0574	Belongs to the PEP-utilizing enzyme family
DNJ55_RS07205	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DNJ55_RS07215	COG1486	melibiose metabolic process
DNJ55_RS07220	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DNJ55_RS07220	COG1263	PTS System
DNJ55_RS07240	COG2210	Belongs to the sulfur carrier protein TusA family
DNJ55_RS07245	COG1937	Protein conserved in bacteria
DNJ55_RS07250	COG0730	response to heat
DNJ55_RS07255	COG2814	Major facilitator Superfamily
DNJ55_RS07280	COG3682	Transcriptional regulator
DNJ55_RS07305	COG1124	(ABC) transporter
DNJ55_RS07310	COG0444	Belongs to the ABC transporter superfamily
DNJ55_RS07320	COG0601	transmembrane transport
DNJ55_RS07325	COG0747	negative chemotaxis
DNJ55_RS07350	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DNJ55_RS07370	COG1525	nuclease
DNJ55_RS07405	COG0582	viral genome integration into host DNA
DNJ55_RS07410	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
DNJ55_RS07505	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DNJ55_RS07505	COG0519	Catalyzes the synthesis of GMP from XMP
DNJ55_RS07510	COG0517	IMP dehydrogenase activity
DNJ55_RS07510	COG0516	GMP reductase activity
DNJ55_RS07515	COG2233	PERMEase
DNJ55_RS07520	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DNJ55_RS07535	COG5183	chlorophyll binding
DNJ55_RS07540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DNJ55_RS07545	COG1823	symporter activity
DNJ55_RS07570	COG0778	Nitroreductase
DNJ55_RS07575	COG0450	alkyl hydroperoxide reductase
DNJ55_RS07590	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
DNJ55_RS07600	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DNJ55_RS07605	COG2011	ABC-type metal ion transport system permease component
DNJ55_RS07610	COG1464	Belongs to the NlpA lipoprotein family
DNJ55_RS07615	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DNJ55_RS07620	COG0753	catalase activity
DNJ55_RS07625	COG3842	ATPase activity
DNJ55_RS07630	COG0673	inositol 2-dehydrogenase activity
DNJ55_RS07635	COG0395	ABC-type sugar transport system, permease component
DNJ55_RS07640	COG1175	transmembrane transport
DNJ55_RS07650	COG2207	Transcriptional regulator
DNJ55_RS07650	COG0662	Cupin 2, conserved barrel domain protein
DNJ55_RS07655	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DNJ55_RS07665	COG0360	Binds together with S18 to 16S ribosomal RNA
DNJ55_RS07675	COG1668	transmembrane transport
DNJ55_RS07680	COG1131	(ABC) transporter
DNJ55_RS07695	COG0012	GTP binding
DNJ55_RS07700	COG4481	Protein conserved in bacteria
DNJ55_RS07705	COG0668	transmembrane transport
DNJ55_RS07710	COG1475	DNA binding
DNJ55_RS07715	COG0626	cystathionine gamma-synthase activity
DNJ55_RS07720	COG0626	cystathionine gamma-synthase activity
DNJ55_RS07725	COG0646	methionine synthase
DNJ55_RS07725	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DNJ55_RS07730	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DNJ55_RS07735	COG0829	nickel cation binding
DNJ55_RS07745	COG0830	nickel cation binding
DNJ55_RS07750	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
DNJ55_RS07765	COG2388	GCN5-related N-acetyl-transferase
DNJ55_RS07770	COG1846	Transcriptional regulator
DNJ55_RS07775	COG0346	lactoylglutathione lyase activity
DNJ55_RS07780	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DNJ55_RS07785	COG0400	carboxylic ester hydrolase activity
DNJ55_RS07800	COG0357	Ribosomal RNA small subunit methyltransferase G
DNJ55_RS07805	COG0445	tRNA wobble uridine modification
DNJ55_RS07810	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DNJ55_RS07815	COG0594	ribonuclease P activity
DNJ55_RS07825	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DNJ55_RS07830	COG0592	DNA-directed DNA polymerase activity
DNJ55_RS07835	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DNJ55_RS07835	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DNJ55_RS07840	COG2501	S4 domain
DNJ55_RS07845	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DNJ55_RS07850	COG0187	DNA topoisomerase II activity
DNJ55_RS07860	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DNJ55_RS07865	COG2986	histidine ammonia-lyase
DNJ55_RS07875	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DNJ55_RS07885	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DNJ55_RS07890	COG4241	membrane
DNJ55_RS07895	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
DNJ55_RS07900	COG0359	binds to the 23S rRNA
DNJ55_RS07905	COG0305	Participates in initiation and elongation during chromosome replication
DNJ55_RS07910	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DNJ55_RS07915	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DNJ55_RS07935	COG0745	RESPONSE REGULATOR receiver
DNJ55_RS07940	COG5002	protein histidine kinase activity
DNJ55_RS07945	COG4863	YycH protein
DNJ55_RS07955	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DNJ55_RS07980	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNJ55_RS07980	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DNJ55_RS08025	COG0584	glycerophosphoryl diester phosphodiesterase
DNJ55_RS08030	COG2030	dehydratase
DNJ55_RS08080	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
DNJ55_RS08120	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
DNJ55_RS08125	COG1353	crispr-associated protein
DNJ55_RS08130	COG1421	Csm2 Type III-A
DNJ55_RS08135	COG1337	RAMP superfamily
DNJ55_RS08140	COG1567	CRISPR-associated RAMP protein, Csm4 family
DNJ55_RS08145	COG1332	CRISPR-associated RAMP protein, Csm5 family
DNJ55_RS08180	COG2311	Membrane
DNJ55_RS08200	COG0531	amino acid
DNJ55_RS08205	COG2217	Heavy metal translocating P-type atpase
DNJ55_RS08235	COG2188	Transcriptional regulator
DNJ55_RS08240	COG2723	6-phospho-beta-galactosidase activity
DNJ55_RS08250	COG0415	Belongs to the DNA photolyase family
DNJ55_RS08265	COG0702	epimerase
DNJ55_RS08270	COG2130	NADP-dependent
DNJ55_RS08285	COG3177	Filamentation induced by cAMP protein fic
DNJ55_RS08290	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DNJ55_RS08300	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DNJ55_RS08305	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DNJ55_RS08325	COG2235	arginine
DNJ55_RS08345	COG2197	response regulator
DNJ55_RS08350	COG2203	Gaf domain
DNJ55_RS08350	COG4585	Histidine kinase
DNJ55_RS08355	COG0842	Transport permease protein
DNJ55_RS08360	COG1131	(ABC) transporter
DNJ55_RS08380	COG0431	NADPH-dependent FMN reductase
DNJ55_RS08395	COG0583	DNA-binding transcription factor activity
DNJ55_RS08400	COG1288	antiporter activity
DNJ55_RS08405	COG1473	amidohydrolase
DNJ55_RS08420	COG1353	crispr-associated protein
DNJ55_RS08425	COG1421	Csm2 Type III-A
DNJ55_RS08430	COG1337	RAMP superfamily
DNJ55_RS08435	COG1567	CRISPR-associated RAMP protein, Csm4 family
DNJ55_RS08440	COG1332	CRISPR-associated RAMP protein, Csm5 family
DNJ55_RS08460	COG1609	Transcriptional regulator
DNJ55_RS08470	COG0673	inositol 2-dehydrogenase activity
DNJ55_RS08480	COG0366	Alpha amylase catalytic
DNJ55_RS08490	COG3833	ABC-type maltose transport systems, permease component
DNJ55_RS08495	COG1175	transmembrane transport
DNJ55_RS08505	COG3842	ATPase activity
DNJ55_RS08510	COG0475	glutathione-regulated potassium exporter activity
DNJ55_RS08515	COG0490	domain, Protein
DNJ55_RS08525	COG0346	lactoylglutathione lyase activity
DNJ55_RS08555	COG1131	(ABC) transporter
DNJ55_RS08565	COG0366	Alpha amylase catalytic
DNJ55_RS08570	COG2188	Transcriptional regulator
DNJ55_RS08575	COG2222	sugar isomerase
DNJ55_RS08580	COG1105	Belongs to the carbohydrate kinase PfkB family
DNJ55_RS08595	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DNJ55_RS08595	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DNJ55_RS08600	COG3715	PTS system
DNJ55_RS08605	COG3716	PTS system mannose fructose sorbose family IID component
DNJ55_RS08615	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DNJ55_RS08635	COG3314	Sporulation integral membrane protein YlbJ
DNJ55_RS08655	COG1063	alcohol dehydrogenase
DNJ55_RS08670	COG1620	l-lactate permease
DNJ55_RS08675	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DNJ55_RS08685	COG0156	8-amino-7-oxononanoate synthase activity
DNJ55_RS08730	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DNJ55_RS08760	COG2318	DinB family
DNJ55_RS08765	COG0753	catalase activity
DNJ55_RS08775	COG0783	Belongs to the Dps family
DNJ55_RS08785	COG0436	Aminotransferase
DNJ55_RS08810	COG1136	(ABC) transporter
DNJ55_RS08820	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DNJ55_RS08840	COG1755	Isoprenylcysteine carboxyl methyltransferase
DNJ55_RS08865	COG0579	oxidoreductase
DNJ55_RS08885	COG1073	alpha beta
DNJ55_RS08905	COG0438	transferase activity, transferring glycosyl groups
DNJ55_RS08910	COG0183	Belongs to the thiolase family
DNJ55_RS08920	COG1960	acyl-CoA dehydrogenase activity
DNJ55_RS08925	COG0318	PFAM AMP-dependent synthetase and ligase
DNJ55_RS08935	COG2814	Major facilitator Superfamily
DNJ55_RS08945	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DNJ55_RS08975	COG1609	Transcriptional regulator
DNJ55_RS08980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DNJ55_RS09045	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DNJ55_RS09075	COG3711	transcriptional antiterminator
DNJ55_RS09080	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DNJ55_RS09090	COG3037	sugar-specific permease SgaT UlaA
DNJ55_RS09100	COG1328	CTP reductase activity
DNJ55_RS09120	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNJ55_RS09125	COG1942	4-Oxalocrotonate Tautomerase
DNJ55_RS09135	COG0803	Belongs to the bacterial solute-binding protein 9 family
DNJ55_RS09135	COG3443	Belongs to the bacterial solute-binding protein 9 family
DNJ55_RS09145	COG1349	DNA-binding transcription factor activity
DNJ55_RS09150	COG1012	belongs to the aldehyde dehydrogenase family
DNJ55_RS09160	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DNJ55_RS09165	COG3962	Belongs to the TPP enzyme family
DNJ55_RS09170	COG0673	inositol 2-dehydrogenase activity
DNJ55_RS09180	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNJ55_RS09185	COG0673	inositol 2-dehydrogenase activity
DNJ55_RS09190	COG0191	fructose-bisphosphate aldolase activity
DNJ55_RS09215	COG2972	Histidine kinase
DNJ55_RS09230	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS09235	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DNJ55_RS09240	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DNJ55_RS09245	COG0477	Major facilitator Superfamily
DNJ55_RS09250	COG2211	Major facilitator Superfamily
DNJ55_RS09255	COG3250	beta-galactosidase activity
DNJ55_RS09260	COG1957	nucleoside hydrolase
DNJ55_RS09295	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DNJ55_RS09300	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
DNJ55_RS09305	COG2807	transmembrane transport
DNJ55_RS09310	COG1396	sequence-specific DNA binding
DNJ55_RS09325	COG1785	Belongs to the alkaline phosphatase family
DNJ55_RS09330	COG0494	nUDIX hydrolase
DNJ55_RS09335	COG0556	nucleotide-excision repair
DNJ55_RS09350	COG1510	regulation of RNA biosynthetic process
DNJ55_RS09355	COG1012	belongs to the aldehyde dehydrogenase family
DNJ55_RS09360	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DNJ55_RS09365	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DNJ55_RS09375	COG0107	imidazoleglycerol-phosphate synthase activity
DNJ55_RS09380	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DNJ55_RS09395	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DNJ55_RS09400	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DNJ55_RS09405	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DNJ55_RS09410	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
DNJ55_RS09445	COG2376	Dihydroxyacetone kinase
DNJ55_RS09450	COG1461	Dihydroxyacetone kinase
DNJ55_RS09455	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
DNJ55_RS09460	COG2824	Alkylphosphonate utilization operon protein PhnA
DNJ55_RS09470	COG1012	belongs to the aldehyde dehydrogenase family
DNJ55_RS09480	COG0596	Alpha beta hydrolase
DNJ55_RS09485	COG0789	Transcriptional regulator
DNJ55_RS09490	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DNJ55_RS09490	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DNJ55_RS09490	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DNJ55_RS09500	COG3942	CHAP domain
DNJ55_RS09500	COG1705	Flagellar rod assembly protein muramidase FlgJ
DNJ55_RS09510	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DNJ55_RS09515	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DNJ55_RS09520	COG0747	negative chemotaxis
DNJ55_RS09545	COG0463	Glycosyl transferase, family 2
DNJ55_RS09545	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS09550	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS09550	COG0463	Glycosyl transferase, family 2
DNJ55_RS09555	COG0438	transferase activity, transferring glycosyl groups
DNJ55_RS09560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DNJ55_RS09565	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
DNJ55_RS09585	COG3181	Tripartite tricarboxylate transporter family receptor
DNJ55_RS09590	COG0778	Nitroreductase
DNJ55_RS09595	COG3001	Fructosamine kinase
DNJ55_RS09620	COG1136	(ABC) transporter
DNJ55_RS09625	COG0577	efflux transmembrane transporter activity
DNJ55_RS09645	COG4413	Urea transporter
DNJ55_RS09655	COG0832	Belongs to the urease beta subunit family
DNJ55_RS09660	COG0804	urea catabolic process
DNJ55_RS09665	COG0717	Belongs to the dCTP deaminase family
DNJ55_RS09670	COG0523	cobalamin synthesis protein
DNJ55_RS09680	COG1141	Ferredoxin
DNJ55_RS09705	COG0583	DNA-binding transcription factor activity
DNJ55_RS09715	COG1346	cytolysis
DNJ55_RS09730	COG1846	Transcriptional regulator
DNJ55_RS09735	COG0778	Nitroreductase
DNJ55_RS09740	COG2357	RelA SpoT domain protein
DNJ55_RS09780	COG1028	Short-chain dehydrogenase reductase Sdr
DNJ55_RS09795	COG3835	regulator
DNJ55_RS09800	COG2855	membrane
DNJ55_RS09805	COG3961	Belongs to the TPP enzyme family
DNJ55_RS09815	COG0512	Glutamine amidotransferase of anthranilate synthase
DNJ55_RS09825	COG0134	indole-3-glycerol-phosphate synthase activity
DNJ55_RS09835	COG0133	tryptophan synthase activity
DNJ55_RS09840	COG0159	tryptophan synthase activity
DNJ55_RS09860	COG0277	FAD linked oxidase domain protein
DNJ55_RS09865	COG0247	lactate metabolic process
DNJ55_RS09870	COG1132	(ABC) transporter
DNJ55_RS09875	COG1132	(ABC) transporter
DNJ55_RS09880	COG0789	Transcriptional regulator
DNJ55_RS09880	COG4978	Transcriptional regulator
DNJ55_RS09885	COG3871	stress protein (general stress protein 26)
DNJ55_RS09890	COG1115	amino acid carrier protein
DNJ55_RS09895	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
DNJ55_RS09900	COG2814	Major facilitator Superfamily
DNJ55_RS09905	COG2271	Major facilitator Superfamily
DNJ55_RS09910	COG3764	Sortase (surface protein transpeptidase)
DNJ55_RS09915	COG1929	Belongs to the glycerate kinase type-1 family
DNJ55_RS09925	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
DNJ55_RS09945	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DNJ55_RS09950	COG0702	epimerase
DNJ55_RS09955	COG4166	transmembrane transport
DNJ55_RS09960	COG0444	Belongs to the ABC transporter superfamily
DNJ55_RS09965	COG4608	Belongs to the ABC transporter superfamily
DNJ55_RS09970	COG0601	transmembrane transport
DNJ55_RS09975	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DNJ55_RS09980	COG4166	transmembrane transport
DNJ55_RS09985	COG0444	Belongs to the ABC transporter superfamily
DNJ55_RS09990	COG4608	Belongs to the ABC transporter superfamily
DNJ55_RS09995	COG0601	transmembrane transport
DNJ55_RS10000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DNJ55_RS10010	COG1760	l-serine dehydratase
DNJ55_RS10015	COG1760	l-serine dehydratase
DNJ55_RS10045	COG0471	metal ion transport
DNJ55_RS10050	COG2116	formate transmembrane transporter activity
DNJ55_RS10055	COG0454	-acetyltransferase
DNJ55_RS10065	COG1648	precorrin-2 dehydrogenase activity
DNJ55_RS10065	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DNJ55_RS10070	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DNJ55_RS10075	COG2146	nitrite reductase [NAD(P)H] activity
DNJ55_RS10080	COG1648	precorrin-2 dehydrogenase activity
DNJ55_RS10080	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DNJ55_RS10085	COG0737	Belongs to the 5'-nucleotidase family
DNJ55_RS10095	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
DNJ55_RS10100	COG1140	nitrate reductase beta subunit
DNJ55_RS10110	COG2181	nitrate reductase activity
DNJ55_RS10120	COG4585	Histidine kinase
DNJ55_RS10125	COG2197	response regulator
DNJ55_RS10130	COG2223	nitrite transmembrane transporter activity
DNJ55_RS10140	COG4187	Peptidase family M20/M25/M40
DNJ55_RS10150	COG0039	L-malate dehydrogenase activity
DNJ55_RS10155	COG1363	Peptidase, m42
DNJ55_RS10160	COG0697	spore germination
DNJ55_RS10170	COG2807	transmembrane transport
DNJ55_RS10180	COG1263	PTS System
DNJ55_RS10180	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DNJ55_RS10195	COG1283	sodium-dependent phosphate transmembrane transporter activity
DNJ55_RS10215	COG0492	ferredoxin-NADP+ reductase activity
DNJ55_RS10220	COG2814	Major facilitator Superfamily
DNJ55_RS10225	COG0604	alcohol dehydrogenase
DNJ55_RS10245	COG1620	l-lactate permease
DNJ55_RS10250	COG0438	transferase activity, transferring glycosyl groups
DNJ55_RS10255	COG0579	oxidoreductase
DNJ55_RS10270	COG0577	efflux transmembrane transporter activity
DNJ55_RS10305	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DNJ55_RS10315	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DNJ55_RS10335	COG1304	FMN binding
DNJ55_RS10340	COG0523	cobalamin synthesis protein
DNJ55_RS10345	COG0786	glutamate:sodium symporter activity
DNJ55_RS10350	COG2207	Transcriptional regulator
DNJ55_RS10355	COG3250	beta-galactosidase activity
DNJ55_RS10375	COG1757	Na H antiporter
DNJ55_RS10380	COG2094	Belongs to the DNA glycosylase MPG family
DNJ55_RS10385	COG3152	Membrane
DNJ55_RS10390	COG4152	abc transporter atp-binding protein
DNJ55_RS10395	COG1668	transmembrane transport
DNJ55_RS10400	COG1742	UPF0060 membrane protein
DNJ55_RS10405	COG2017	converts alpha-aldose to the beta-anomer
DNJ55_RS10410	COG2258	MOSC domain
DNJ55_RS10415	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DNJ55_RS10425	COG1266	CAAX protease self-immunity
DNJ55_RS10430	COG0583	DNA-binding transcription factor activity
DNJ55_RS10435	COG3314	Sporulation integral membrane protein YlbJ
DNJ55_RS10440	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
DNJ55_RS10445	COG1228	amidohydrolase
DNJ55_RS10450	COG0659	secondary active sulfate transmembrane transporter activity
DNJ55_RS10455	COG1473	amidohydrolase
DNJ55_RS10475	COG0385	Bile acid
DNJ55_RS10485	COG0346	lactoylglutathione lyase activity
DNJ55_RS10490	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DNJ55_RS10515	COG1113	amino acid transport
DNJ55_RS10540	COG1316	TRANSCRIPTIONal
DNJ55_RS10555	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
DNJ55_RS10560	COG3383	formate dehydrogenase (NAD+) activity
DNJ55_RS10585	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DNJ55_RS10590	COG2076	Multidrug Resistance protein
DNJ55_RS10595	COG2076	Multidrug Resistance protein
DNJ55_RS10600	COG3942	CHAP domain
DNJ55_RS10610	COG1757	Na H antiporter
DNJ55_RS10620	COG3942	CHAP domain
DNJ55_RS10640	COG1960	acyl-CoA dehydrogenase activity
DNJ55_RS10645	COG2832	Protein of unknown function (DUF454)
DNJ55_RS10650	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DNJ55_RS10655	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNJ55_RS10665	COG2186	Transcriptional regulator
DNJ55_RS10675	COG1268	BioY protein
DNJ55_RS10690	COG1609	Transcriptional regulator
DNJ55_RS10695	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DNJ55_RS10700	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DNJ55_RS10705	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
DNJ55_RS10715	COG4149	molybdate abc transporter
DNJ55_RS10720	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DNJ55_RS10725	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DNJ55_RS10730	COG0521	Mo-molybdopterin cofactor biosynthetic process
DNJ55_RS10750	COG0314	molybdopterin synthase activity
DNJ55_RS10760	COG0746	molybdenum cofactor guanylyltransferase activity
DNJ55_RS10765	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DNJ55_RS10790	COG2348	transferase activity, transferring amino-acyl groups
DNJ55_RS10795	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DNJ55_RS10800	COG0436	Aminotransferase
DNJ55_RS10835	COG2252	PERMEase
DNJ55_RS10855	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DNJ55_RS10860	COG0088	Forms part of the polypeptide exit tunnel
DNJ55_RS10865	COG0089	rRNA binding
DNJ55_RS10870	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DNJ55_RS10875	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DNJ55_RS10880	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DNJ55_RS10885	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DNJ55_RS10890	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DNJ55_RS10895	COG0255	Belongs to the universal ribosomal protein uL29 family
DNJ55_RS10905	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DNJ55_RS10920	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DNJ55_RS10925	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DNJ55_RS10930	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DNJ55_RS10940	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DNJ55_RS10945	COG1841	ribosomal large subunit assembly
DNJ55_RS10955	COG0201	protein transport
DNJ55_RS10970	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DNJ55_RS10980	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DNJ55_RS10985	COG0202	RNA polymerase activity
DNJ55_RS10990	COG0203	ribosomal protein L17
DNJ55_RS10995	COG1122	ATPase activity
DNJ55_RS11000	COG1122	ATPase activity
DNJ55_RS11010	COG0101	tRNA pseudouridine synthase activity
DNJ55_RS11015	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DNJ55_RS11035	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DNJ55_RS11100	COG3684	Belongs to the aldolase LacD family
DNJ55_RS11110	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DNJ55_RS11110	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DNJ55_RS11120	COG0488	(ABC) transporter
DNJ55_RS11125	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DNJ55_RS11135	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DNJ55_RS11150	COG1302	Protein conserved in bacteria
DNJ55_RS11155	COG2814	Major facilitator Superfamily
DNJ55_RS11160	COG4264	IucA IucC family
DNJ55_RS11165	COG2814	Major facilitator Superfamily
DNJ55_RS11170	COG4264	IucA IucC family
DNJ55_RS11175	COG3457	Alanine racemase
DNJ55_RS11180	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DNJ55_RS11185	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS11190	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DNJ55_RS11195	COG3314	Sporulation integral membrane protein YlbJ
DNJ55_RS11205	COG1988	membrane-bound metal-dependent
DNJ55_RS11210	COG4284	Utp--glucose-1-phosphate uridylyltransferase
DNJ55_RS11215	COG1272	protein, Hemolysin III
DNJ55_RS11235	COG2814	Major facilitator Superfamily
DNJ55_RS11240	COG0489	protein tyrosine kinase activity
DNJ55_RS11305	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DNJ55_RS11320	COG3711	transcriptional antiterminator
DNJ55_RS11350	COG1119	ATPase activity
DNJ55_RS11355	COG0561	phosphatase activity
DNJ55_RS11365	COG2186	Transcriptional regulator
DNJ55_RS11370	COG1482	cell wall glycoprotein biosynthetic process
DNJ55_RS11385	COG1757	Na H antiporter
DNJ55_RS11395	COG0813	purine-nucleoside phosphorylase activity
DNJ55_RS11430	COG5146	pantothenate kinase activity
DNJ55_RS11445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DNJ55_RS11450	COG3343	RNA polymerase activity
DNJ55_RS11455	COG0504	CTP synthase activity
DNJ55_RS11460	COG2271	Major facilitator Superfamily
DNJ55_RS11465	COG4821	SIS domain
DNJ55_RS11470	COG0191	fructose-bisphosphate aldolase activity
DNJ55_RS11475	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DNJ55_RS11480	COG1733	regulation of RNA biosynthetic process
DNJ55_RS11490	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DNJ55_RS11495	COG0254	rRNA binding
DNJ55_RS11505	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DNJ55_RS11510	COG2890	protein-(glutamine-N5) methyltransferase activity
DNJ55_RS11515	COG0009	L-threonylcarbamoyladenylate synthase
DNJ55_RS11520	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DNJ55_RS11525	COG4475	Protein of unknown function (DUF436)
DNJ55_RS11530	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DNJ55_RS11535	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DNJ55_RS11540	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DNJ55_RS11550	COG0356	it plays a direct role in the translocation of protons across the membrane
DNJ55_RS11555	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DNJ55_RS11565	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DNJ55_RS11575	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DNJ55_RS11605	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DNJ55_RS11620	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DNJ55_RS11630	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
DNJ55_RS11635	COG0352	thiamine-phosphate diphosphorylase activity
DNJ55_RS11640	COG0706	membrane insertase activity
DNJ55_RS11645	COG1418	mRNA catabolic process
DNJ55_RS11650	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DNJ55_RS11655	COG1937	Protein conserved in bacteria
DNJ55_RS11670	COG2217	Heavy metal translocating P-type atpase
DNJ55_RS11685	COG0772	Belongs to the SEDS family
DNJ55_RS11690	COG1181	Belongs to the D-alanine--D-alanine ligase family
DNJ55_RS11695	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DNJ55_RS11700	COG0513	Belongs to the DEAD box helicase family
DNJ55_RS11715	COG3402	PFAM membrane-flanked domain
DNJ55_RS11720	COG0736	holo-[acyl-carrier-protein] synthase activity
DNJ55_RS11725	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DNJ55_RS11735	COG2337	Toxic component of a toxin-antitoxin (TA) module
DNJ55_RS11740	COG2208	phosphoserine phosphatase activity
DNJ55_RS11745	COG1366	Belongs to the anti-sigma-factor antagonist family
DNJ55_RS11755	COG1191	sigma factor activity
DNJ55_RS11760	COG2183	response to ionizing radiation
DNJ55_RS11765	COG3091	SprT-like family
DNJ55_RS11825	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DNJ55_RS11835	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DNJ55_RS11840	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DNJ55_RS11850	COG0028	Belongs to the TPP enzyme family
DNJ55_RS11855	COG0129	dihydroxy-acid dehydratase activity
DNJ55_RS11860	COG0802	atpase or kinase
DNJ55_RS11865	COG1214	PFAM Peptidase M22, glycoprotease
DNJ55_RS11870	COG0456	acetyltransferase
DNJ55_RS11875	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DNJ55_RS11880	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DNJ55_RS11885	COG0488	(ABC) transporter
DNJ55_RS11890	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DNJ55_RS11895	COG2814	Major facilitator Superfamily
DNJ55_RS11900	COG1846	Transcriptional regulator
DNJ55_RS11910	COG2124	cytochrome p450
DNJ55_RS11920	COG1609	Transcriptional regulator
DNJ55_RS11925	COG1621	beta-fructofuranosidase activity
DNJ55_RS11930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DNJ55_RS11950	COG4512	PFAM Accessory gene regulator B
DNJ55_RS11995	COG1404	Belongs to the peptidase S8 family
DNJ55_RS12000	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DNJ55_RS12005	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DNJ55_RS12025	COG1131	(ABC) transporter
DNJ55_RS12040	COG1070	Carbohydrate kinase
DNJ55_RS12045	COG2610	gluconate transmembrane transporter activity
DNJ55_RS12080	COG2706	6-phosphogluconolactonase activity
DNJ55_RS12085	COG1012	belongs to the aldehyde dehydrogenase family
DNJ55_RS12095	COG1227	inorganic diphosphatase activity
DNJ55_RS12100	COG1335	isochorismatase
DNJ55_RS12110	COG0077	Prephenate dehydratase
DNJ55_RS12120	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DNJ55_RS12130	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
DNJ55_RS12140	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DNJ55_RS12145	COG4496	protein, YerC YecD
DNJ55_RS12150	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
DNJ55_RS12155	COG0210	DNA helicase
DNJ55_RS12160	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DNJ55_RS12165	COG4851	CamS sex pheromone cAM373 precursor
DNJ55_RS12170	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DNJ55_RS12175	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DNJ55_RS12185	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DNJ55_RS12190	COG1597	lipid kinase activity
DNJ55_RS12200	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DNJ55_RS12215	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DNJ55_RS12225	COG1528	Iron-storage protein
DNJ55_RS12240	COG4129	membrane
DNJ55_RS12245	COG0024	Methionine aminopeptidase
DNJ55_RS12270	COG0288	reversible hydration of carbon dioxide
DNJ55_RS12275	COG1295	ribonuclease BN
DNJ55_RS12290	COG4840	Belongs to the UPF0435 family
DNJ55_RS12295	COG2309	aminopeptidase activity
DNJ55_RS12300	COG1607	acyl-coa hydrolase
DNJ55_RS12305	COG0535	radical SAM domain protein
DNJ55_RS12315	COG0693	protein deglycase activity
DNJ55_RS12320	COG0028	Belongs to the TPP enzyme family
DNJ55_RS12325	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DNJ55_RS12330	COG2137	regulation of response to DNA damage stimulus
DNJ55_RS12340	COG1388	LysM domain
DNJ55_RS12340	COG1134	teichoic acid transport
DNJ55_RS12350	COG1988	membrane-bound metal-dependent
DNJ55_RS12355	COG1194	a g-specific adenine glycosylase
DNJ55_RS12360	COG3557	Belongs to the UPF0374 family
DNJ55_RS12375	COG4129	membrane
DNJ55_RS12380	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DNJ55_RS12385	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DNJ55_RS12395	COG0735	belongs to the Fur family
DNJ55_RS12620	COG0765	amino acid transport
DNJ55_RS12625	COG1126	abc transporter atp-binding protein
DNJ55_RS12630	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DNJ55_RS12640	COG0363	glucosamine-6-phosphate deaminase activity
DNJ55_RS12655	COG0114	fumarate hydratase activity
DNJ55_RS12660	COG0248	Ppx GppA phosphatase
DNJ55_RS12665	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DNJ55_RS12670	COG0564	pseudouridine synthase activity
DNJ55_RS12675	COG2203	Gaf domain
DNJ55_RS12675	COG4585	Histidine kinase
DNJ55_RS12680	COG2197	response regulator
DNJ55_RS12690	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DNJ55_RS12700	COG4399	Belongs to the UPF0754 family
DNJ55_RS12705	COG3679	Belongs to the UPF0342 family
DNJ55_RS12710	COG0420	3'-5' exonuclease activity
DNJ55_RS12720	COG3481	metal-dependent phosphohydrolase, HD sub domain
DNJ55_RS12725	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DNJ55_RS12740	COG1846	Transcriptional regulator
DNJ55_RS12750	COG0537	adenosine 5'-monophosphoramidase activity
DNJ55_RS12755	COG1131	(ABC) transporter
DNJ55_RS12760	COG4473	ABC transporter
DNJ55_RS12780	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DNJ55_RS12790	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
DNJ55_RS12795	COG3545	Serine hydrolase