locus-tag class description DNI88_RS00010 PF06580 Histidine kinase DNI88_RS00015 PF06580 Histidine kinase DNI88_RS00085 PF12642 Conjugative transposon protein TcpC DNI88_RS00090 PF02486 Replication initiation factor DNI88_RS00090 PF18106 Rolling Circle replication initiation protein N-terminal domain DNI88_RS00120 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS00125 PF00483 Nucleotidyl transferase DNI88_RS00130 PF03605 Anaerobic c4-dicarboxylate membrane transporter DNI88_RS00135 PF06779 Uncharacterised MFS-type transporter YbfB DNI88_RS00145 PF02929 Beta galactosidase small chain DNI88_RS00145 PF00703 Glycosyl hydrolases family 2 DNI88_RS00145 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DNI88_RS00145 PF02837 Glycosyl hydrolases family 2, sugar binding domain DNI88_RS00150 PF01156 Inosine-uridine preferring nucleoside hydrolase DNI88_RS00180 PF13091 PLD-like domain DNI88_RS00180 PF13396 Phospholipase_D-nuclease N-terminal DNI88_RS00185 PF01964 Radical SAM ThiC family DNI88_RS00185 PF13667 ThiC-associated domain DNI88_RS00190 PF03824 High-affinity nickel-transport protein DNI88_RS00195 PF07690 Major Facilitator Superfamily DNI88_RS00200 PF01381 Helix-turn-helix DNI88_RS00200 PF08671 Anti-repressor SinI DNI88_RS00205 PF10502 Signal peptidase, peptidase S26 DNI88_RS00215 PF00245 Alkaline phosphatase DNI88_RS00220 PF00293 NUDIX domain DNI88_RS00225 PF04851 Type III restriction enzyme, res subunit DNI88_RS00225 PF02151 UvrB/uvrC motif DNI88_RS00225 PF12344 Ultra-violet resistance protein B DNI88_RS00225 PF00271 Helicase conserved C-terminal domain DNI88_RS00225 PF17757 UvrB interaction domain DNI88_RS00230 PF01566 Natural resistance-associated macrophage protein DNI88_RS00235 PF02028 BCCT, betaine/carnitine/choline family transporter DNI88_RS00245 PF00171 Aldehyde dehydrogenase family DNI88_RS00250 PF05199 GMC oxidoreductase DNI88_RS00250 PF00732 GMC oxidoreductase DNI88_RS00255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DNI88_RS00255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DNI88_RS00260 PF01502 Phosphoribosyl-AMP cyclohydrolase DNI88_RS00260 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DNI88_RS00265 PF00977 Histidine biosynthesis protein DNI88_RS00270 PF00977 Histidine biosynthesis protein DNI88_RS00275 PF00117 Glutamine amidotransferase class-I DNI88_RS00280 PF00475 Imidazoleglycerol-phosphate dehydratase DNI88_RS00285 PF00155 Aminotransferase class I and II DNI88_RS00290 PF00815 Histidinol dehydrogenase DNI88_RS00295 PF01634 ATP phosphoribosyltransferase DNI88_RS00300 PF13393 Histidyl-tRNA synthetase DNI88_RS00305 PF01791 DeoC/LacD family aldolase DNI88_RS00310 PF01676 Metalloenzyme superfamily DNI88_RS00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS00315 PF06580 Histidine kinase DNI88_RS00315 PF07694 5TMR of 5TMR-LYT DNI88_RS00320 PF04397 LytTr DNA-binding domain DNI88_RS00320 PF00072 Response regulator receiver domain DNI88_RS00325 PF03788 LrgA family DNI88_RS00330 PF04172 LrgB-like family DNI88_RS00335 PF02733 Dak1 domain DNI88_RS00340 PF02734 DAK2 domain DNI88_RS00345 PF03610 PTS system fructose IIA component DNI88_RS00350 PF03831 PhnA domain DNI88_RS00350 PF08274 PhnA Zinc-Ribbon DNI88_RS00355 PF00171 Aldehyde dehydrogenase family DNI88_RS00365 PF03992 Antibiotic biosynthesis monooxygenase DNI88_RS00370 PF12146 Serine aminopeptidase, S33 DNI88_RS00375 PF13411 MerR HTH family regulatory protein DNI88_RS00375 PF07739 TipAS antibiotic-recognition domain DNI88_RS00380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS00380 PF02378 Phosphotransferase system, EIIC DNI88_RS00380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS00385 PF01468 GA module DNI88_RS00390 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DNI88_RS00390 PF05257 CHAP domain DNI88_RS00395 PF01061 ABC-2 type transporter DNI88_RS00400 PF13649 Methyltransferase domain DNI88_RS00405 PF02677 Epoxyqueuosine reductase QueH DNI88_RS00410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DNI88_RS00415 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00420 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00425 PF00005 ABC transporter DNI88_RS00430 PF00005 ABC transporter DNI88_RS00435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS00435 PF00535 Glycosyl transferase family 2 DNI88_RS00440 PF00535 Glycosyl transferase family 2 DNI88_RS00440 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS00445 PF00534 Glycosyl transferases group 1 DNI88_RS00445 PF11380 Stealth protein CR2, conserved region 2 DNI88_RS00445 PF17102 Stealth protein CR3, conserved region 3 DNI88_RS00445 PF17103 Stealth protein CR4, conserved region 4 DNI88_RS00445 PF17101 Stealth protein CR1, conserved region 1 DNI88_RS00450 PF01370 NAD dependent epimerase/dehydratase family DNI88_RS00455 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS00465 PF01970 Tripartite tricarboxylate transporter TctA family DNI88_RS00475 PF03401 Tripartite tricarboxylate transporter family receptor DNI88_RS00480 PF00881 Nitroreductase family DNI88_RS00485 PF03881 Fructosamine kinase DNI88_RS00510 PF00005 ABC transporter DNI88_RS00515 PF12704 MacB-like periplasmic core domain DNI88_RS00515 PF02687 FtsX-like permease family DNI88_RS00520 PF04650 YSIRK type signal peptide DNI88_RS00525 PF04650 YSIRK type signal peptide DNI88_RS00530 PF16916 Dimerisation domain of Zinc Transporter DNI88_RS00530 PF01545 Cation efflux family DNI88_RS00535 PF03253 Urea transporter DNI88_RS00540 PF00547 Urease, gamma subunit DNI88_RS00545 PF00699 Urease beta subunit DNI88_RS00550 PF00449 Urease alpha-subunit, N-terminal domain DNI88_RS00550 PF01979 Amidohydrolase family DNI88_RS00555 PF00692 dUTPase DNI88_RS00560 PF07683 Cobalamin synthesis protein cobW C-terminal domain DNI88_RS00560 PF02492 CobW/HypB/UreG, nucleotide-binding domain DNI88_RS00595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DNI88_RS00595 PF03466 LysR substrate binding domain DNI88_RS00600 PF03788 LrgA family DNI88_RS00605 PF04172 LrgB-like family DNI88_RS00620 PF01047 MarR family DNI88_RS00625 PF00881 Nitroreductase family DNI88_RS00630 PF04607 Region found in RelA / SpoT proteins DNI88_RS00635 PF01551 Peptidase family M23 DNI88_RS00640 PF01464 Transglycosylase SLT domain DNI88_RS00645 PF03976 Polyphosphate kinase 2 (PPK2) DNI88_RS00665 PF03413 Peptidase propeptide and YPEB domain DNI88_RS00665 PF07504 Fungalysin/Thermolysin Propeptide Motif DNI88_RS00665 PF02868 Thermolysin metallopeptidase, alpha-helical domain DNI88_RS00665 PF01447 Thermolysin metallopeptidase, catalytic domain DNI88_RS00685 PF13556 PucR C-terminal helix-turn-helix domain DNI88_RS00685 PF17853 GGDEF-like domain DNI88_RS00685 PF05651 Putative sugar diacid recognition DNI88_RS00690 PF03601 Conserved hypothetical protein 698 DNI88_RS00695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DNI88_RS00695 PF00205 Thiamine pyrophosphate enzyme, central domain DNI88_RS00695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS00700 PF04715 Anthranilate synthase component I, N terminal region DNI88_RS00700 PF00425 chorismate binding enzyme DNI88_RS00705 PF00117 Glutamine amidotransferase class-I DNI88_RS00710 PF00591 Glycosyl transferase family, a/b domain DNI88_RS00715 PF00218 Indole-3-glycerol phosphate synthase DNI88_RS00720 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DNI88_RS00725 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS00730 PF00290 Tryptophan synthase alpha chain DNI88_RS00750 PF01565 FAD binding domain DNI88_RS00750 PF02913 FAD linked oxidases, C-terminal domain DNI88_RS00755 PF13183 4Fe-4S dicluster domain DNI88_RS00755 PF02754 Cysteine-rich domain DNI88_RS00760 PF00664 ABC transporter transmembrane region DNI88_RS00760 PF00005 ABC transporter DNI88_RS00765 PF00005 ABC transporter DNI88_RS00765 PF00664 ABC transporter transmembrane region DNI88_RS00770 PF06445 GyrI-like small molecule binding domain DNI88_RS00770 PF13411 MerR HTH family regulatory protein DNI88_RS00775 PF16242 Pyridoxamine 5'-phosphate oxidase like DNI88_RS00780 PF01235 Sodium:alanine symporter family DNI88_RS00785 PF06874 Firmicute fructose-1,6-bisphosphatase DNI88_RS00790 PF07690 Major Facilitator Superfamily DNI88_RS00795 PF07690 Major Facilitator Superfamily DNI88_RS00800 PF04203 Sortase domain DNI88_RS00805 PF02595 Glycerate kinase family DNI88_RS00815 PF04405 Domain of Unknown function (DUF542) DNI88_RS00815 PF01814 Hemerythrin HHE cation binding domain DNI88_RS00820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DNI88_RS00820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DNI88_RS00830 PF02901 Pyruvate formate lyase-like DNI88_RS00830 PF01228 Glycine radical DNI88_RS00835 PF04055 Radical SAM superfamily DNI88_RS00840 PF13460 NAD(P)H-binding DNI88_RS00845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DNI88_RS00850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS00850 PF00005 ABC transporter DNI88_RS00855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS00855 PF00005 ABC transporter DNI88_RS00860 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00865 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00865 PF12911 N-terminal TM domain of oligopeptide transport permease C DNI88_RS00870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DNI88_RS00875 PF00005 ABC transporter DNI88_RS00875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS00880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS00880 PF00005 ABC transporter DNI88_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00890 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS00890 PF12911 N-terminal TM domain of oligopeptide transport permease C DNI88_RS00900 PF03313 Serine dehydratase alpha chain DNI88_RS00905 PF01842 ACT domain DNI88_RS00905 PF03315 Serine dehydratase beta chain DNI88_RS00925 PF00171 Aldehyde dehydrogenase family DNI88_RS00935 PF00939 Sodium:sulfate symporter transmembrane region DNI88_RS00940 PF01226 Formate/nitrite transporter DNI88_RS00945 PF00583 Acetyltransferase (GNAT) family DNI88_RS00955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DNI88_RS00955 PF14824 Sirohaem biosynthesis protein central DNI88_RS00955 PF10414 Sirohaem synthase dimerisation region DNI88_RS00960 PF18267 Rubredoxin NAD+ reductase C-terminal domain DNI88_RS00960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DNI88_RS00960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DNI88_RS00960 PF04324 BFD-like [2Fe-2S] binding domain DNI88_RS00960 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS00965 PF00355 Rieske [2Fe-2S] domain DNI88_RS00970 PF14824 Sirohaem biosynthesis protein central DNI88_RS00970 PF10414 Sirohaem synthase dimerisation region DNI88_RS00970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DNI88_RS00975 PF02872 5'-nucleotidase, C-terminal domain DNI88_RS00975 PF00149 Calcineurin-like phosphoesterase DNI88_RS00985 PF01568 Molydopterin dinucleotide binding domain DNI88_RS00985 PF00384 Molybdopterin oxidoreductase DNI88_RS00985 PF14710 Respiratory nitrate reductase alpha N-terminal DNI88_RS00990 PF13247 4Fe-4S dicluster domain DNI88_RS00990 PF14711 Respiratory nitrate reductase beta C-terminal DNI88_RS01000 PF02665 Nitrate reductase gamma subunit DNI88_RS01010 PF07730 Histidine kinase DNI88_RS01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS01015 PF00196 Bacterial regulatory proteins, luxR family DNI88_RS01015 PF00072 Response regulator receiver domain DNI88_RS01020 PF07690 Major Facilitator Superfamily DNI88_RS01030 PF01546 Peptidase family M20/M25/M40 DNI88_RS01040 PF00056 lactate/malate dehydrogenase, NAD binding domain DNI88_RS01040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DNI88_RS01045 PF05343 M42 glutamyl aminopeptidase DNI88_RS01050 PF00892 EamA-like transporter family DNI88_RS01060 PF07690 Major Facilitator Superfamily DNI88_RS01070 PF02378 Phosphotransferase system, EIIC DNI88_RS01070 PF00367 phosphotransferase system, EIIB DNI88_RS01085 PF02690 Na+/Pi-cotransporter DNI88_RS01105 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS01110 PF00083 Sugar (and other) transporter DNI88_RS01115 PF08240 Alcohol dehydrogenase GroES-like domain DNI88_RS01115 PF00107 Zinc-binding dehydrogenase DNI88_RS01120 PF13673 Acetyltransferase (GNAT) domain DNI88_RS01130 PF02652 L-lactate permease DNI88_RS01135 PF11380 Stealth protein CR2, conserved region 2 DNI88_RS01135 PF17101 Stealth protein CR1, conserved region 1 DNI88_RS01135 PF00534 Glycosyl transferases group 1 DNI88_RS01135 PF17102 Stealth protein CR3, conserved region 3 DNI88_RS01135 PF17103 Stealth protein CR4, conserved region 4 DNI88_RS01140 PF06039 Malate:quinone oxidoreductase (Mqo) DNI88_RS01145 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS01145 PF00672 HAMP domain DNI88_RS01145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS01150 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS01150 PF00072 Response regulator receiver domain DNI88_RS01155 PF02687 FtsX-like permease family DNI88_RS01160 PF00005 ABC transporter DNI88_RS01175 PF12802 MarR family DNI88_RS01190 PF03070 TENA/THI-4/PQQC family DNI88_RS01200 PF00085 Thioredoxin DNI88_RS01205 PF07859 alpha/beta hydrolase fold DNI88_RS01220 PF01070 FMN-dependent dehydrogenase DNI88_RS01225 PF07683 Cobalamin synthesis protein cobW C-terminal domain DNI88_RS01225 PF02492 CobW/HypB/UreG, nucleotide-binding domain DNI88_RS01230 PF03616 Sodium/glutamate symporter DNI88_RS01235 PF02311 AraC-like ligand binding domain DNI88_RS01235 PF12833 Helix-turn-helix domain DNI88_RS01240 PF02837 Glycosyl hydrolases family 2, sugar binding domain DNI88_RS01240 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DNI88_RS01240 PF00703 Glycosyl hydrolases family 2 DNI88_RS01240 PF02929 Beta galactosidase small chain DNI88_RS01260 PF03553 Na+/H+ antiporter family DNI88_RS01265 PF02245 Methylpurine-DNA glycosylase (MPG) DNI88_RS01270 PF05656 Protein of unknown function (DUF805) DNI88_RS01275 PF13732 Domain of unknown function (DUF4162) DNI88_RS01275 PF00005 ABC transporter DNI88_RS01285 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DNI88_RS01290 PF01263 Aldose 1-epimerase DNI88_RS01295 PF03473 MOSC domain DNI88_RS01295 PF03475 3-alpha domain DNI88_RS01300 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DNI88_RS01305 PF00491 Arginase family DNI88_RS01310 PF02517 CPBP intramembrane metalloprotease DNI88_RS01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DNI88_RS01315 PF03466 LysR substrate binding domain DNI88_RS01320 PF07670 Nucleoside recognition DNI88_RS01325 PF01175 Urocanase Rossmann-like domain DNI88_RS01325 PF17392 Urocanase C-terminal domain DNI88_RS01325 PF17391 Urocanase N-terminal domain DNI88_RS01330 PF01979 Amidohydrolase family DNI88_RS01335 PF01740 STAS domain DNI88_RS01335 PF00916 Sulfate permease family DNI88_RS01360 PF01758 Sodium Bile acid symporter family DNI88_RS01370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DNI88_RS01375 PF13419 Haloacid dehalogenase-like hydrolase DNI88_RS01400 PF00324 Amino acid permease DNI88_RS01425 PF03816 Cell envelope-related transcriptional attenuator domain DNI88_RS01440 PF01470 Pyroglutamyl peptidase DNI88_RS01445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DNI88_RS01445 PF01568 Molydopterin dinucleotide binding domain DNI88_RS01445 PF00384 Molybdopterin oxidoreductase DNI88_RS01445 PF12838 4Fe-4S dicluster domain DNI88_RS01445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DNI88_RS01465 PF01494 FAD binding domain DNI88_RS01470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS01470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNI88_RS01475 PF00893 Small Multidrug Resistance protein DNI88_RS01480 PF00893 Small Multidrug Resistance protein DNI88_RS01485 PF05257 CHAP domain DNI88_RS01490 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain DNI88_RS01490 PF02558 Ketopantoate reductase PanE/ApbA DNI88_RS01495 PF03553 Na+/H+ antiporter family DNI88_RS01505 PF05257 CHAP domain DNI88_RS01525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DNI88_RS01525 PF02770 Acyl-CoA dehydrogenase, middle domain DNI88_RS01525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DNI88_RS01530 PF04304 Protein of unknown function (DUF454) DNI88_RS01535 PF01497 Periplasmic binding protein DNI88_RS01540 PF00474 Sodium:solute symporter family DNI88_RS01545 PF00701 Dihydrodipicolinate synthetase family DNI88_RS01550 PF07729 FCD domain DNI88_RS01550 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS01555 PF00480 ROK family DNI88_RS01560 PF02632 BioY family DNI88_RS01570 PF02634 FdhD/NarQ family DNI88_RS01575 PF00356 Bacterial regulatory proteins, lacI family DNI88_RS01580 PF00288 GHMP kinases N terminal domain DNI88_RS01580 PF08544 GHMP kinases C terminal DNI88_RS01580 PF10509 Galactokinase galactose-binding signature DNI88_RS01585 PF16363 GDP-mannose 4,6 dehydratase DNI88_RS01590 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DNI88_RS01590 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DNI88_RS01600 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS01605 PF00005 ABC transporter DNI88_RS01605 PF08402 TOBE domain DNI88_RS01610 PF00899 ThiF family DNI88_RS01620 PF01967 MoaC family DNI88_RS01625 PF00994 Probable molybdopterin binding domain DNI88_RS01625 PF03454 MoeA C-terminal region (domain IV) DNI88_RS01625 PF03453 MoeA N-terminal region (domain I and II) DNI88_RS01640 PF02391 MoaE protein DNI88_RS01645 PF02597 ThiS family DNI88_RS01650 PF12804 MobA-like NTP transferase domain DNI88_RS01655 PF06463 Molybdenum Cofactor Synthesis C DNI88_RS01655 PF04055 Radical SAM superfamily DNI88_RS01665 PF01047 MarR family DNI88_RS01680 PF02388 FemAB family DNI88_RS01685 PF00873 AcrB/AcrD/AcrF family DNI88_RS01690 PF00155 Aminotransferase class I and II DNI88_RS01720 PF01751 Toprim domain DNI88_RS01720 PF01131 DNA topoisomerase DNI88_RS01725 PF00860 Permease family DNI88_RS01740 PF00338 Ribosomal protein S10p/S20e DNI88_RS01745 PF00297 Ribosomal protein L3 DNI88_RS01750 PF00573 Ribosomal protein L4/L1 family DNI88_RS01755 PF00276 Ribosomal protein L23 DNI88_RS01760 PF00181 Ribosomal Proteins L2, RNA binding domain DNI88_RS01760 PF03947 Ribosomal Proteins L2, C-terminal domain DNI88_RS01765 PF00203 Ribosomal protein S19 DNI88_RS01770 PF00237 Ribosomal protein L22p/L17e DNI88_RS01775 PF00189 Ribosomal protein S3, C-terminal domain DNI88_RS01775 PF07650 KH domain DNI88_RS01780 PF00252 Ribosomal protein L16p/L10e DNI88_RS01785 PF00831 Ribosomal L29 protein DNI88_RS01790 PF00366 Ribosomal protein S17 DNI88_RS01795 PF00238 Ribosomal protein L14p/L23e DNI88_RS01800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DNI88_RS01800 PF00467 KOW motif DNI88_RS01805 PF00673 ribosomal L5P family C-terminus DNI88_RS01805 PF00281 Ribosomal protein L5 DNI88_RS01810 PF00253 Ribosomal protein S14p/S29e DNI88_RS01815 PF00410 Ribosomal protein S8 DNI88_RS01820 PF00347 Ribosomal protein L6 DNI88_RS01825 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DNI88_RS01830 PF00333 Ribosomal protein S5, N-terminal domain DNI88_RS01830 PF03719 Ribosomal protein S5, C-terminal domain DNI88_RS01835 PF00327 Ribosomal protein L30p/L7e DNI88_RS01840 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DNI88_RS01845 PF00344 SecY translocase DNI88_RS01850 PF05191 Adenylate kinase, active site lid DNI88_RS01855 PF01176 Translation initiation factor 1A / IF-1 DNI88_RS01860 PF00444 Ribosomal protein L36 DNI88_RS01865 PF00416 Ribosomal protein S13/S18 DNI88_RS01870 PF00411 Ribosomal protein S11 DNI88_RS01875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DNI88_RS01875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DNI88_RS01875 PF01000 RNA polymerase Rpb3/RpoA insert domain DNI88_RS01880 PF01196 Ribosomal protein L17 DNI88_RS01885 PF00005 ABC transporter DNI88_RS01890 PF00005 ABC transporter DNI88_RS01895 PF02361 Cobalt transport protein DNI88_RS01900 PF01416 tRNA pseudouridine synthase DNI88_RS01905 PF00572 Ribosomal protein L13 DNI88_RS01910 PF00380 Ribosomal protein S9/S16 DNI88_RS01920 PF17191 RecG wedge domain DNI88_RS01920 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DNI88_RS01920 PF00270 DEAD/DEAH box helicase DNI88_RS01925 PF00380 Ribosomal protein S9/S16 DNI88_RS01975 PF00455 DeoR C terminal sensor domain DNI88_RS01975 PF08220 DeoR-like helix-turn-helix domain DNI88_RS01980 PF02502 Ribose/Galactose Isomerase DNI88_RS01985 PF02502 Ribose/Galactose Isomerase DNI88_RS01990 PF01791 DeoC/LacD family aldolase DNI88_RS01995 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DNI88_RS02000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS02000 PF02378 Phosphotransferase system, EIIC DNI88_RS02005 PF00232 Glycosyl hydrolase family 1 DNI88_RS02010 PF00005 ABC transporter DNI88_RS02010 PF16326 ABC transporter C-terminal domain DNI88_RS02010 PF12848 ABC transporter DNI88_RS02015 PF00296 Luciferase-like monooxygenase DNI88_RS02020 PF08240 Alcohol dehydrogenase GroES-like domain DNI88_RS02020 PF00107 Zinc-binding dehydrogenase DNI88_RS02025 PF02028 BCCT, betaine/carnitine/choline family transporter DNI88_RS02040 PF03780 Asp23 family, cell envelope-related function DNI88_RS02045 PF07690 Major Facilitator Superfamily DNI88_RS02050 PF04183 IucA / IucC family DNI88_RS02050 PF06276 Ferric iron reductase FhuF-like transporter DNI88_RS02055 PF05977 Transmembrane secretion effector DNI88_RS02060 PF04183 IucA / IucC family DNI88_RS02060 PF06276 Ferric iron reductase FhuF-like transporter DNI88_RS02065 PF01168 Alanine racemase, N-terminal domain DNI88_RS02070 PF01497 Periplasmic binding protein DNI88_RS02075 PF01032 FecCD transport family DNI88_RS02080 PF01032 FecCD transport family DNI88_RS02085 PF07670 Nucleoside recognition DNI88_RS02095 PF04307 LexA-binding, inner membrane-associated putative hydrolase DNI88_RS02100 PF01704 UTP--glucose-1-phosphate uridylyltransferase DNI88_RS02105 PF03006 Haemolysin-III related DNI88_RS02115 PF07690 Major Facilitator Superfamily DNI88_RS02120 PF17080 Multidrug Resistance efflux pump DNI88_RS02125 PF07690 Major Facilitator Superfamily DNI88_RS02130 PF10609 NUBPL iron-transfer P-loop NTPase DNI88_RS02180 PF00491 Arginase family DNI88_RS02185 PF02457 DisA bacterial checkpoint controller nucleotide-binding DNI88_RS02195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DNI88_RS02195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DNI88_RS02195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DNI88_RS02195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DNI88_RS02200 PF08125 Mannitol dehydrogenase C-terminal domain DNI88_RS02200 PF01232 Mannitol dehydrogenase Rossmann domain DNI88_RS02205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS02210 PF08279 HTH domain DNI88_RS02210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS02210 PF05043 Mga helix-turn-helix domain DNI88_RS02210 PF00874 PRD domain DNI88_RS02210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS02215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS02215 PF02378 Phosphotransferase system, EIIC DNI88_RS02220 PF01380 SIS domain DNI88_RS02240 PF00005 ABC transporter DNI88_RS02255 PF07729 FCD domain DNI88_RS02255 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS02260 PF01238 Phosphomannose isomerase type I DNI88_RS02275 PF03553 Na+/H+ antiporter family DNI88_RS02285 PF01048 Phosphorylase superfamily DNI88_RS02290 PF00591 Glycosyl transferase family, a/b domain DNI88_RS02290 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DNI88_RS02290 PF02885 Glycosyl transferase family, helical bundle domain DNI88_RS02300 PF02664 S-Ribosylhomocysteinase (LuxS) DNI88_RS02320 PF03630 Fumble DNI88_RS02330 PF02028 BCCT, betaine/carnitine/choline family transporter DNI88_RS02340 PF05066 HB1, ASXL, restriction endonuclease HTH domain DNI88_RS02345 PF00117 Glutamine amidotransferase class-I DNI88_RS02345 PF06418 CTP synthase N-terminus DNI88_RS02350 PF07690 Major Facilitator Superfamily DNI88_RS02355 PF10740 Domain of unknown function (DUF2529) DNI88_RS02360 PF01116 Fructose-bisphosphate aldolase class-II DNI88_RS02365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DNI88_RS02370 PF01638 HxlR-like helix-turn-helix DNI88_RS02375 PF00171 Aldehyde dehydrogenase family DNI88_RS02380 PF07498 Rho termination factor, N-terminal domain DNI88_RS02380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DNI88_RS02380 PF07497 Rho termination factor, RNA-binding domain DNI88_RS02385 PF01197 Ribosomal protein L31 DNI88_RS02390 PF00265 Thymidine kinase DNI88_RS02395 PF00472 RF-1 domain DNI88_RS02395 PF03462 PCRF domain DNI88_RS02400 PF17827 PrmC N-terminal domain DNI88_RS02400 PF05175 Methyltransferase small domain DNI88_RS02405 PF03481 Putative GTP-binding controlling metal-binding DNI88_RS02405 PF01300 Telomere recombination DNI88_RS02410 PF01451 Low molecular weight phosphotyrosine protein phosphatase DNI88_RS02415 PF04260 Protein of unknown function (DUF436) DNI88_RS02420 PF00464 Serine hydroxymethyltransferase DNI88_RS02430 PF02350 UDP-N-acetylglucosamine 2-epimerase DNI88_RS02440 PF00119 ATP synthase A chain DNI88_RS02445 PF00137 ATP synthase subunit C DNI88_RS02450 PF00430 ATP synthase B/B' CF(0) DNI88_RS02455 PF00213 ATP synthase delta (OSCP) subunit DNI88_RS02460 PF00306 ATP synthase alpha/beta chain, C terminal domain DNI88_RS02460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DNI88_RS02460 PF02874 ATP synthase alpha/beta family, beta-barrel domain DNI88_RS02465 PF00231 ATP synthase DNI88_RS02470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DNI88_RS02470 PF02874 ATP synthase alpha/beta family, beta-barrel domain DNI88_RS02475 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DNI88_RS02475 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DNI88_RS02485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DNI88_RS02495 PF07977 FabA-like domain DNI88_RS02510 PF03070 TENA/THI-4/PQQC family DNI88_RS02515 PF08543 Phosphomethylpyrimidine kinase DNI88_RS02520 PF02110 Hydroxyethylthiazole kinase family DNI88_RS02525 PF02581 Thiamine monophosphate synthase DNI88_RS02530 PF02096 60Kd inner membrane protein DNI88_RS02535 PF01966 HD domain DNI88_RS02540 PF13091 PLD-like domain DNI88_RS02540 PF13396 Phospholipase_D-nuclease N-terminal DNI88_RS02545 PF02583 Metal-sensitive transcriptional repressor DNI88_RS02555 PF00403 Heavy-metal-associated domain DNI88_RS02560 PF00403 Heavy-metal-associated domain DNI88_RS02575 PF01098 Cell cycle protein DNI88_RS02580 PF01820 D-ala D-ala ligase N-terminus DNI88_RS02580 PF07478 D-ala D-ala ligase C-terminus DNI88_RS02585 PF08245 Mur ligase middle domain DNI88_RS02585 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS02585 PF01225 Mur ligase family, catalytic domain DNI88_RS02590 PF00271 Helicase conserved C-terminal domain DNI88_RS02590 PF00270 DEAD/DEAH box helicase DNI88_RS02605 PF03703 Bacterial PH domain DNI88_RS02610 PF01648 4'-phosphopantetheinyl transferase superfamily DNI88_RS02615 PF01168 Alanine racemase, N-terminal domain DNI88_RS02615 PF00842 Alanine racemase, C-terminal domain DNI88_RS02625 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DNI88_RS02630 PF07228 Stage II sporulation protein E (SpoIIE) DNI88_RS02630 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DNI88_RS02635 PF01740 STAS domain DNI88_RS02640 PF13581 Histidine kinase-like ATPase domain DNI88_RS02645 PF04545 Sigma-70, region 4 DNI88_RS02645 PF04539 Sigma-70 region 3 DNI88_RS02645 PF04542 Sigma-70 region 2 DNI88_RS02650 PF17674 HHH domain DNI88_RS02650 PF00575 S1 RNA binding domain DNI88_RS02650 PF09371 Tex-like protein N-terminal domain DNI88_RS02650 PF16921 Tex protein YqgF-like domain DNI88_RS02655 PF10263 SprT-like family DNI88_RS02705 PF00585 C-terminal regulatory domain of Threonine dehydratase DNI88_RS02705 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS02710 PF00694 Aconitase C-terminal domain DNI88_RS02715 PF00330 Aconitase family (aconitate hydratase) DNI88_RS02720 PF00180 Isocitrate/isopropylmalate dehydrogenase DNI88_RS02725 PF00682 HMGL-like DNI88_RS02725 PF08502 LeuA allosteric (dimerisation) domain DNI88_RS02730 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DNI88_RS02730 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DNI88_RS02740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DNI88_RS02740 PF00205 Thiamine pyrophosphate enzyme, central domain DNI88_RS02740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS02745 PF00920 Dehydratase family DNI88_RS02750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DNI88_RS02755 PF00814 Glycoprotease family DNI88_RS02760 PF00583 Acetyltransferase (GNAT) family DNI88_RS02765 PF00814 Glycoprotease family DNI88_RS02770 PF05190 MutS family domain IV DNI88_RS02770 PF00488 MutS domain V DNI88_RS02770 PF05188 MutS domain II DNI88_RS02770 PF01624 MutS domain I DNI88_RS02770 PF05192 MutS domain III DNI88_RS02775 PF00005 ABC transporter DNI88_RS02775 PF16326 ABC transporter C-terminal domain DNI88_RS02775 PF12848 ABC transporter DNI88_RS02780 PF06971 Putative DNA-binding protein N-terminus DNI88_RS02780 PF02629 CoA binding domain DNI88_RS02785 PF07690 Major Facilitator Superfamily DNI88_RS02790 PF01047 MarR family DNI88_RS02795 PF16715 Cyclodipeptide synthase DNI88_RS02800 PF00067 Cytochrome P450 DNI88_RS02810 PF00356 Bacterial regulatory proteins, lacI family DNI88_RS02810 PF13407 Periplasmic binding protein domain DNI88_RS02815 PF00251 Glycosyl hydrolases family 32 N-terminal domain DNI88_RS02815 PF08244 Glycosyl hydrolases family 32 C terminal DNI88_RS02820 PF00294 pfkB family carbohydrate kinase DNI88_RS02825 PF00072 Response regulator receiver domain DNI88_RS02825 PF04397 LytTr DNA-binding domain DNI88_RS02840 PF04647 Accessory gene regulator B DNI88_RS02850 PF00795 Carbon-nitrogen hydrolase DNI88_RS02860 PF02517 CPBP intramembrane metalloprotease DNI88_RS02865 PF00166 Chaperonin 10 Kd subunit DNI88_RS02870 PF00118 TCP-1/cpn60 chaperonin family DNI88_RS02885 PF05922 Peptidase inhibitor I9 DNI88_RS02885 PF00082 Subtilase family DNI88_RS02890 PF01546 Peptidase family M20/M25/M40 DNI88_RS02890 PF07687 Peptidase dimerisation domain DNI88_RS02895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DNI88_RS02895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DNI88_RS02915 PF00005 ABC transporter DNI88_RS02925 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS02925 PF07729 FCD domain DNI88_RS02930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DNI88_RS02930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DNI88_RS02935 PF02447 GntP family permease DNI88_RS02970 PF10282 Lactonase, 7-bladed beta-propeller DNI88_RS02975 PF00171 Aldehyde dehydrogenase family DNI88_RS02985 PF01368 DHH family DNI88_RS02985 PF02833 DHHA2 domain DNI88_RS02990 PF00857 Isochorismatase family DNI88_RS03000 PF01842 ACT domain DNI88_RS03000 PF00800 Prephenate dehydratase DNI88_RS03005 PF02898 Nitric oxide synthase, oxygenase domain DNI88_RS03010 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DNI88_RS03010 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DNI88_RS03010 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DNI88_RS03015 PF02540 NAD synthase DNI88_RS03020 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DNI88_RS03030 PF10397 Adenylosuccinate lyase C-terminus DNI88_RS03030 PF00206 Lyase DNI88_RS03035 PF01371 Trp repressor protein DNI88_RS03040 PF01884 PcrB family DNI88_RS03045 PF00580 UvrD/REP helicase N-terminal domain DNI88_RS03045 PF13361 UvrD-like helicase C-terminal domain DNI88_RS03050 PF12826 Helix-hairpin-helix motif DNI88_RS03050 PF03120 NAD-dependent DNA ligase OB-fold domain DNI88_RS03050 PF01653 NAD-dependent DNA ligase adenylation domain DNI88_RS03050 PF00533 BRCA1 C Terminus (BRCT) domain DNI88_RS03050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DNI88_RS03055 PF07537 CamS sex pheromone cAM373 precursor DNI88_RS03060 PF00474 Sodium:solute symporter family DNI88_RS03065 PF02686 Glu-tRNAGln amidotransferase C subunit DNI88_RS03070 PF01425 Amidase DNI88_RS03075 PF02637 GatB domain DNI88_RS03075 PF02934 GatB/GatE catalytic domain DNI88_RS03080 PF00781 Diacylglycerol kinase catalytic domain DNI88_RS03085 PF05958 tRNA (Uracil-5-)-methyltransferase DNI88_RS03090 PF04055 Radical SAM superfamily DNI88_RS03090 PF06463 Molybdenum Cofactor Synthesis C DNI88_RS03105 PF11799 impB/mucB/samB family C-terminal domain DNI88_RS03105 PF00817 impB/mucB/samB family DNI88_RS03115 PF00210 Ferritin-like domain DNI88_RS03120 PF08245 Mur ligase middle domain DNI88_RS03120 PF08353 Domain of unknown function (DUF1727) DNI88_RS03125 PF07685 CobB/CobQ-like glutamine amidotransferase domain DNI88_RS03130 PF06081 Aromatic acid exporter family member 1 DNI88_RS03135 PF00557 Metallopeptidase family M24 DNI88_RS03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS03150 PF07730 Histidine kinase DNI88_RS03155 PF00072 Response regulator receiver domain DNI88_RS03155 PF00196 Bacterial regulatory proteins, luxR family DNI88_RS03160 PF00484 Carbonic anhydrase DNI88_RS03165 PF03631 Virulence factor BrkB DNI88_RS03175 PF01451 Low molecular weight phosphotyrosine protein phosphatase DNI88_RS03180 PF06569 Protein of unknown function (DUF1128) DNI88_RS03185 PF02073 Thermophilic metalloprotease (M29) DNI88_RS03190 PF03061 Thioesterase superfamily DNI88_RS03195 PF04055 Radical SAM superfamily DNI88_RS03195 PF08756 YfkB-like domain DNI88_RS03205 PF01965 DJ-1/PfpI family DNI88_RS03210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS03210 PF00205 Thiamine pyrophosphate enzyme, central domain DNI88_RS03210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DNI88_RS03215 PF00912 Transglycosylase DNI88_RS03220 PF02631 RecX family DNI88_RS03230 PF01476 LysM domain DNI88_RS03230 PF00005 ABC transporter DNI88_RS03240 PF04307 LexA-binding, inner membrane-associated putative hydrolase DNI88_RS03245 PF14815 NUDIX domain DNI88_RS03245 PF00730 HhH-GPD superfamily base excision DNA repair protein DNI88_RS03250 PF04167 Protein of unknown function (DUF402) DNI88_RS03255 PF00005 ABC transporter DNI88_RS03255 PF00664 ABC transporter transmembrane region DNI88_RS03265 PF06081 Aromatic acid exporter family member 1 DNI88_RS03270 PF00202 Aminotransferase class-III DNI88_RS03275 PF00578 AhpC/TSA family DNI88_RS03280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNI88_RS03280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS03285 PF01475 Ferric uptake regulator family DNI88_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS03515 PF00005 ABC transporter DNI88_RS03520 PF08331 Domain of unknown function (DUF1730) DNI88_RS03525 PF00588 SpoU rRNA Methylase family DNI88_RS03530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DNI88_RS03545 PF10415 Fumarase C C-terminus DNI88_RS03545 PF00206 Lyase DNI88_RS03550 PF02541 Ppx/GppA phosphatase family DNI88_RS03555 PF02503 Polyphosphate kinase middle domain DNI88_RS03555 PF13090 Polyphosphate kinase C-terminal domain 2 DNI88_RS03555 PF17941 Polyphosphate kinase C-terminal domain 1 DNI88_RS03555 PF13089 Polyphosphate kinase N-terminal domain DNI88_RS03560 PF00849 RNA pseudouridylate synthase DNI88_RS03560 PF01479 S4 domain DNI88_RS03565 PF07730 Histidine kinase DNI88_RS03565 PF13185 GAF domain DNI88_RS03570 PF00196 Bacterial regulatory proteins, luxR family DNI88_RS03570 PF00072 Response regulator receiver domain DNI88_RS03575 PF00375 Sodium:dicarboxylate symporter family DNI88_RS03580 PF16916 Dimerisation domain of Zinc Transporter DNI88_RS03580 PF01545 Cation efflux family DNI88_RS03590 PF04286 Protein of unknown function (DUF445) DNI88_RS03595 PF06133 Control of competence regulator ComK, YlbF/YmcA DNI88_RS03600 PF00149 Calcineurin-like phosphoesterase DNI88_RS03610 PF01336 OB-fold nucleic acid binding domain DNI88_RS03610 PF01966 HD domain DNI88_RS03615 PF00639 PPIC-type PPIASE domain DNI88_RS03630 PF01047 MarR family DNI88_RS03640 PF01230 HIT domain DNI88_RS03645 PF00005 ABC transporter DNI88_RS03650 PF05975 Bacterial ABC transporter protein EcsB DNI88_RS03665 PF01208 Uroporphyrinogen decarboxylase (URO-D) DNI88_RS03670 PF00762 Ferrochelatase DNI88_RS03675 PF01593 Flavin containing amine oxidoreductase DNI88_RS03680 PF06821 Serine hydrolase DNI88_RS03745 PF01726 LexA DNA binding domain DNI88_RS03745 PF00717 Peptidase S24-like DNI88_RS03820 PF00436 Single-strand binding protein family DNI88_RS03845 PF01695 IstB-like ATP binding protein DNI88_RS03900 PF01555 DNA methylase DNI88_RS03910 PF00692 dUTPase DNI88_RS03965 PF00574 Clp protease DNI88_RS04015 PF01551 Peptidase family M23 DNI88_RS04015 PF04225 Opacity-associated protein A LysM-like domain DNI88_RS04055 PF05257 CHAP domain DNI88_RS04055 PF08460 Bacterial SH3 domain DNI88_RS04055 PF01510 N-acetylmuramoyl-L-alanine amidase DNI88_RS04095 PF07968 Leukocidin/Hemolysin toxin family DNI88_RS04100 PF07968 Leukocidin/Hemolysin toxin family DNI88_RS04115 PF03611 PTS system sugar-specific permease component DNI88_RS04120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS04125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS04130 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DNI88_RS04135 PF01261 Xylose isomerase-like TIM barrel DNI88_RS04140 PF00596 Class II Aldolase and Adducin N-terminal domain DNI88_RS04150 PF13193 AMP-binding enzyme C-terminal domain DNI88_RS04150 PF00501 AMP-binding enzyme DNI88_RS04160 PF01809 Putative membrane protein insertion efficiency factor DNI88_RS04165 PF00293 NUDIX domain DNI88_RS04170 PF00326 Prolyl oligopeptidase family DNI88_RS04175 PF01293 Phosphoenolpyruvate carboxykinase DNI88_RS04180 PF00438 S-adenosylmethionine synthetase, N-terminal domain DNI88_RS04180 PF02773 S-adenosylmethionine synthetase, C-terminal domain DNI88_RS04180 PF02772 S-adenosylmethionine synthetase, central domain DNI88_RS04190 PF00248 Aldo/keto reductase family DNI88_RS04195 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DNI88_RS04200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DNI88_RS04210 PF00923 Transaldolase/Fructose-6-phosphate aldolase DNI88_RS04225 PF04542 Sigma-70 region 2 DNI88_RS04235 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DNI88_RS04235 PF13457 GW (Gly-Tryp) dipeptide domain DNI88_RS04245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DNI88_RS04245 PF01872 RibD C-terminal domain DNI88_RS04250 PF00677 Lumazine binding domain DNI88_RS04255 PF00925 GTP cyclohydrolase II DNI88_RS04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DNI88_RS04260 PF00885 6,7-dimethyl-8-ribityllumazine synthase DNI88_RS04265 PF01619 Proline dehydrogenase DNI88_RS04275 PF12146 Serine aminopeptidase, S33 DNI88_RS04280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DNI88_RS04280 PF00056 lactate/malate dehydrogenase, NAD binding domain DNI88_RS04285 PF01047 MarR family DNI88_RS04290 PF06962 Putative rRNA methylase DNI88_RS04295 PF16199 Radical_SAM C-terminal domain DNI88_RS04295 PF04055 Radical SAM superfamily DNI88_RS04300 PF07690 Major Facilitator Superfamily DNI88_RS04305 PF13603 Leucyl-tRNA synthetase, Domain 2 DNI88_RS04305 PF09334 tRNA synthetases class I (M) DNI88_RS04305 PF08264 Anticodon-binding domain of tRNA DNI88_RS04305 PF00133 tRNA synthetases class I (I, L, M and V) DNI88_RS04310 PF00581 Rhodanese-like domain DNI88_RS04320 PF14667 Polysaccharide biosynthesis C-terminal domain DNI88_RS04320 PF01943 Polysaccharide biosynthesis protein DNI88_RS04325 PF00849 RNA pseudouridylate synthase DNI88_RS04325 PF01479 S4 domain DNI88_RS04335 PF01546 Peptidase family M20/M25/M40 DNI88_RS04340 PF01063 Amino-transferase class IV DNI88_RS04345 PF01636 Phosphotransferase enzyme family DNI88_RS04350 PF02390 Putative methyltransferase DNI88_RS04355 PF00753 Metallo-beta-lactamase superfamily DNI88_RS04365 PF05343 M42 glutamyl aminopeptidase DNI88_RS04370 PF00085 Thioredoxin DNI88_RS04375 PF07285 Protein of unknown function (DUF1444) DNI88_RS04380 PF01588 Putative tRNA binding domain DNI88_RS04380 PF14794 Domain of unknown function (DUF4479) DNI88_RS04385 PF01580 FtsK/SpoIIIE family DNI88_RS04385 PF09397 Ftsk gamma domain DNI88_RS04385 PF17854 FtsK alpha domain DNI88_RS04390 PF08245 Mur ligase middle domain DNI88_RS04390 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS04390 PF01225 Mur ligase family, catalytic domain DNI88_RS04395 PF06103 Bacterial protein of unknown function (DUF948) DNI88_RS04405 PF01817 Chorismate mutase type II DNI88_RS04405 PF00793 DAHP synthetase I family DNI88_RS04410 PF00356 Bacterial regulatory proteins, lacI family DNI88_RS04415 PF00850 Histone deacetylase domain DNI88_RS04420 PF00583 Acetyltransferase (GNAT) family DNI88_RS04425 PF00501 AMP-binding enzyme DNI88_RS04425 PF13193 AMP-binding enzyme C-terminal domain DNI88_RS04430 PF01268 Formate--tetrahydrofolate ligase DNI88_RS04435 PF17092 Penicillin-binding protein OB-like domain DNI88_RS04435 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS04435 PF00912 Transglycosylase DNI88_RS04440 PF00579 tRNA synthetases class I (W and Y) DNI88_RS04440 PF01479 S4 domain DNI88_RS04445 PF13180 PDZ domain DNI88_RS04450 PF01553 Acyltransferase DNI88_RS04460 PF01842 ACT domain DNI88_RS04460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS04460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNI88_RS04465 PF00266 Aminotransferase class-V DNI88_RS04470 PF02566 OsmC-like protein DNI88_RS04475 PF03009 Glycerophosphoryl diester phosphodiesterase family DNI88_RS04480 PF02423 Ornithine cyclodeaminase/mu-crystallin family DNI88_RS04505 PF00583 Acetyltransferase (GNAT) family DNI88_RS04510 PF01636 Phosphotransferase enzyme family DNI88_RS04515 PF00872 Transposase, Mutator family DNI88_RS04540 PF01479 S4 domain DNI88_RS04540 PF00163 Ribosomal protein S4/S9 N-terminal domain DNI88_RS04545 PF13185 GAF domain DNI88_RS04550 PF06160 Septation ring formation regulator, EzrA DNI88_RS04555 PF00266 Aminotransferase class-V DNI88_RS04560 PF02926 THUMP domain DNI88_RS04560 PF02568 Thiamine biosynthesis protein (ThiI) DNI88_RS04565 PF01925 Sulfite exporter TauE/SafE DNI88_RS04570 PF01343 Peptidase family S49 DNI88_RS04575 PF06271 RDD family DNI88_RS04580 PF08534 Redoxin DNI88_RS04585 PF02384 N-6 DNA Methylase DNI88_RS04590 PF00871 Acetokinase family DNI88_RS04595 PF00582 Universal stress protein family DNI88_RS04600 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DNI88_RS04600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DNI88_RS04605 PF03932 CutC family DNI88_RS04610 PF01321 Creatinase/Prolidase N-terminal domain DNI88_RS04610 PF00557 Metallopeptidase family M24 DNI88_RS04625 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS04625 PF07085 DRTGG domain DNI88_RS04625 PF00571 CBS domain DNI88_RS04625 PF03061 Thioesterase superfamily DNI88_RS04630 PF02272 DHHA1 domain DNI88_RS04630 PF01368 DHH family DNI88_RS04635 PF07733 Bacterial DNA polymerase III alpha NTPase domain DNI88_RS04635 PF02811 PHP domain DNI88_RS04635 PF14579 Helix-hairpin-helix motif DNI88_RS04635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DNI88_RS04635 PF01336 OB-fold nucleic acid binding domain DNI88_RS04640 PF00390 Malic enzyme, N-terminal domain DNI88_RS04640 PF03949 Malic enzyme, NAD binding domain DNI88_RS04645 PF01039 Carboxyl transferase domain DNI88_RS04645 PF17848 Acetyl-coA carboxylase zinc finger domain DNI88_RS04650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DNI88_RS04655 PF00365 Phosphofructokinase DNI88_RS04660 PF00224 Pyruvate kinase, barrel domain DNI88_RS04660 PF00391 PEP-utilising enzyme, mobile domain DNI88_RS04660 PF02887 Pyruvate kinase, alpha/beta domain DNI88_RS04665 PF00285 Citrate synthase, C-terminal domain DNI88_RS04670 PF00180 Isocitrate/isopropylmalate dehydrogenase DNI88_RS04675 PF00072 Response regulator receiver domain DNI88_RS04675 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS04680 PF16736 Single Cache-like DNI88_RS04680 PF00989 PAS fold DNI88_RS04680 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS04680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS04685 PF00476 DNA polymerase family A DNI88_RS04685 PF01367 5'-3' exonuclease, C-terminal SAM fold DNI88_RS04685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DNI88_RS04690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DNI88_RS04690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DNI88_RS04690 PF06827 Zinc finger found in FPG and IleRS DNI88_RS04695 PF01121 Dephospho-CoA kinase DNI88_RS04700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DNI88_RS04700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNI88_RS04705 PF03477 ATP cone domain DNI88_RS04710 PF07261 Replication initiation and membrane attachment DNI88_RS04715 PF01695 IstB-like ATP binding protein DNI88_RS04715 PF07319 Primosomal protein DnaI N-terminus DNI88_RS04720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DNI88_RS04720 PF02824 TGS domain DNI88_RS04720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DNI88_RS04720 PF03129 Anticodon binding domain DNI88_RS04725 PF00324 Amino acid permease DNI88_RS04735 PF05198 Translation initiation factor IF-3, N-terminal domain DNI88_RS04735 PF00707 Translation initiation factor IF-3, C-terminal domain DNI88_RS04740 PF01632 Ribosomal protein L35 DNI88_RS04745 PF00453 Ribosomal protein L20 DNI88_RS04760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DNI88_RS04760 PF05698 Bacterial trigger factor protein (TF) C-terminus DNI88_RS04760 PF05697 Bacterial trigger factor protein (TF) DNI88_RS04765 PF10431 C-terminal, D2-small domain, of ClpB protein DNI88_RS04765 PF07724 AAA domain (Cdc48 subfamily) DNI88_RS04765 PF06689 ClpX C4-type zinc finger DNI88_RS04770 PF01926 50S ribosome-binding GTPase DNI88_RS04775 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DNI88_RS04775 PF01488 Shikimate / quinate 5-dehydrogenase DNI88_RS04775 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DNI88_RS04785 PF03900 Porphobilinogen deaminase, C-terminal domain DNI88_RS04785 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DNI88_RS04795 PF00490 Delta-aminolevulinic acid dehydratase DNI88_RS04800 PF00202 Aminotransferase class-III DNI88_RS04810 PF03352 Methyladenine glycosylase DNI88_RS04815 PF10458 Valyl tRNA synthetase tRNA binding arm DNI88_RS04815 PF00133 tRNA synthetases class I (I, L, M and V) DNI88_RS04815 PF08264 Anticodon-binding domain of tRNA DNI88_RS04820 PF08245 Mur ligase middle domain DNI88_RS04820 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS04825 PF06750 Bacterial Peptidase A24 N-terminal domain DNI88_RS04825 PF01478 Type IV leader peptidase family DNI88_RS04830 PF04002 RadC-like JAB domain DNI88_RS04850 PF04085 rod shape-determining protein MreC DNI88_RS04860 PF00829 Ribosomal prokaryotic L21 protein DNI88_RS04865 PF04327 Cysteine protease Prp DNI88_RS04870 PF01016 Ribosomal L27 protein DNI88_RS04875 PF01018 GTP1/OBG DNI88_RS04875 PF01926 50S ribosome-binding GTPase DNI88_RS04875 PF09269 Domain of unknown function (DUF1967) DNI88_RS04885 PF07499 RuvA, C-terminal domain DNI88_RS04885 PF01330 RuvA N terminal domain DNI88_RS04890 PF17864 RuvB AAA lid domain DNI88_RS04890 PF05496 Holliday junction DNA helicase RuvB P-loop domain DNI88_RS04890 PF05491 RuvB C-terminal winged helix domain DNI88_RS04895 PF02547 Queuosine biosynthesis protein DNI88_RS04900 PF01702 Queuine tRNA-ribosyltransferase DNI88_RS04905 PF02699 Preprotein translocase subunit DNI88_RS04910 PF02355 Protein export membrane protein DNI88_RS04910 PF07549 SecD/SecF GG Motif DNI88_RS04915 PF01368 DHH family DNI88_RS04915 PF02272 DHHA1 domain DNI88_RS04915 PF17768 RecJ OB domain DNI88_RS04915 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DNI88_RS04920 PF00156 Phosphoribosyl transferase domain DNI88_RS04925 PF04607 Region found in RelA / SpoT proteins DNI88_RS04925 PF02824 TGS domain DNI88_RS04925 PF13291 ACT domain DNI88_RS04930 PF02580 D-Tyr-tRNA(Tyr) deacylase DNI88_RS04935 PF08239 Bacterial SH3 domain DNI88_RS04935 PF01520 N-acetylmuramoyl-L-alanine amidase DNI88_RS04940 PF03129 Anticodon binding domain DNI88_RS04940 PF13393 Histidyl-tRNA synthetase DNI88_RS04945 PF02938 GAD domain DNI88_RS04945 PF01336 OB-fold nucleic acid binding domain DNI88_RS04945 PF00152 tRNA synthetases class II (D, K and N) DNI88_RS04955 PF00899 ThiF family DNI88_RS04960 PF16193 AAA C-terminal domain DNI88_RS04960 PF12002 MgsA AAA+ ATPase C terminal DNI88_RS04960 PF05496 Holliday junction DNA helicase RuvB P-loop domain DNI88_RS04965 PF02082 Transcriptional regulator DNI88_RS04970 PF00248 Aldo/keto reductase family DNI88_RS04975 PF05532 CsbD-like DNI88_RS04985 PF00296 Luciferase-like monooxygenase DNI88_RS04990 PF00266 Aminotransferase class-V DNI88_RS05005 PF14490 Helix-hairpin-helix containing domain DNI88_RS05005 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DNI88_RS05005 PF13538 UvrD-like helicase C-terminal domain DNI88_RS05010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DNI88_RS05010 PF02272 DHHA1 domain DNI88_RS05010 PF01411 tRNA synthetases class II (A) DNI88_RS05015 PF06135 IreB regulatory phosphoprotein DNI88_RS05020 PF03652 Holliday junction resolvase DNI88_RS05025 PF06949 Protein of unknown function (DUF1292) DNI88_RS05030 PF01596 O-methyltransferase DNI88_RS05035 PF01136 Peptidase family U32 DNI88_RS05040 PF16325 Peptidase family U32 C-terminal domain DNI88_RS05040 PF01136 Peptidase family U32 DNI88_RS05045 PF00485 Phosphoribulokinase / Uridine kinase family DNI88_RS05050 PF01272 Transcription elongation factor, GreA/GreB, C-term DNI88_RS05050 PF03449 Transcription elongation factor, N-terminal DNI88_RS05055 PF02682 Carboxyltransferase domain, subdomain C and D DNI88_RS05060 PF02626 Carboxyltransferase domain, subdomain A and B DNI88_RS05065 PF00364 Biotin-requiring enzyme DNI88_RS05070 PF02785 Biotin carboxylase C-terminal domain DNI88_RS05070 PF00289 Biotin carboxylase, N-terminal domain DNI88_RS05070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DNI88_RS05075 PF03746 LamB/YcsF family DNI88_RS05080 PF01566 Natural resistance-associated macrophage protein DNI88_RS05085 PF01048 Phosphorylase superfamily DNI88_RS05095 PF01926 50S ribosome-binding GTPase DNI88_RS05100 PF08501 Shikimate dehydrogenase substrate binding domain DNI88_RS05100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DNI88_RS05100 PF01488 Shikimate / quinate 5-dehydrogenase DNI88_RS05105 PF01985 CRS1 / YhbY (CRM) domain DNI88_RS05110 PF01467 Cytidylyltransferase-like DNI88_RS05115 PF01966 HD domain DNI88_RS05125 PF13649 Methyltransferase domain DNI88_RS05130 PF10531 SLBB domain DNI88_RS05135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DNI88_RS05140 PF00753 Metallo-beta-lactamase superfamily DNI88_RS05140 PF03772 Competence protein DNI88_RS05140 PF13567 Domain of unknown function (DUF4131) DNI88_RS05145 PF06144 DNA polymerase III, delta subunit DNI88_RS05150 PF01649 Ribosomal protein S20 DNI88_RS05155 PF03144 Elongation factor Tu domain 2 DNI88_RS05155 PF06421 GTP-binding protein LepA C-terminus DNI88_RS05155 PF00009 Elongation factor Tu GTP binding domain DNI88_RS05155 PF00679 Elongation factor G C-terminus DNI88_RS05160 PF04055 Radical SAM superfamily DNI88_RS05160 PF06969 HemN C-terminal domain DNI88_RS05165 PF01628 HrcA protein C terminal domain DNI88_RS05170 PF01025 GrpE DNI88_RS05175 PF00012 Hsp70 protein DNI88_RS05180 PF00226 DnaJ domain DNI88_RS05180 PF00684 DnaJ central domain DNI88_RS05180 PF01556 DnaJ C terminal domain DNI88_RS05190 PF04452 RNA methyltransferase DNI88_RS05195 PF00919 Uncharacterized protein family UPF0004 DNI88_RS05195 PF01938 TRAM domain DNI88_RS05195 PF04055 Radical SAM superfamily DNI88_RS05200 PF01165 Ribosomal protein S21 DNI88_RS05215 PF01957 NfeD-like C-terminal, partner-binding DNI88_RS05215 PF01972 Serine dehydrogenase proteinase DNI88_RS05220 PF12127 SigmaW regulon antibacterial DNI88_RS05230 PF02562 PhoH-like protein DNI88_RS05235 PF02130 Uncharacterized protein family UPF0054 DNI88_RS05240 PF01219 Prokaryotic diacylglycerol kinase DNI88_RS05250 PF01926 50S ribosome-binding GTPase DNI88_RS05250 PF07650 KH domain DNI88_RS05255 PF11967 Recombination protein O N terminal DNI88_RS05255 PF02565 Recombination protein O C terminal DNI88_RS05260 PF03129 Anticodon binding domain DNI88_RS05260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DNI88_RS05265 PF08279 HTH domain DNI88_RS05265 PF00571 CBS domain DNI88_RS05270 PF03618 Kinase/pyrophosphorylase DNI88_RS05275 PF13662 Toprim domain DNI88_RS05275 PF00772 DnaB-like helicase N terminal domain DNI88_RS05275 PF01807 CHC2 zinc finger DNI88_RS05275 PF08275 DNA primase catalytic core, N-terminal domain DNI88_RS05280 PF04545 Sigma-70, region 4 DNI88_RS05280 PF04539 Sigma-70 region 3 DNI88_RS05280 PF04542 Sigma-70 region 2 DNI88_RS05280 PF00140 Sigma-70 factor, region 1.2 DNI88_RS05280 PF03979 Sigma-70 factor, region 1.1 DNI88_RS05285 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DNI88_RS05290 PF01784 NIF3 (NGG1p interacting factor 3) DNI88_RS05295 PF02401 LytB protein DNI88_RS05300 PF00271 Helicase conserved C-terminal domain DNI88_RS05300 PF00270 DEAD/DEAH box helicase DNI88_RS05305 PF01261 Xylose isomerase-like TIM barrel DNI88_RS05310 PF00005 ABC transporter DNI88_RS05315 PF00950 ABC 3 transport family DNI88_RS05320 PF01475 Ferric uptake regulator family DNI88_RS05325 PF04551 GcpE protein DNI88_RS05330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DNI88_RS05330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DNI88_RS05335 PF03717 Penicillin-binding Protein dimerisation domain DNI88_RS05335 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS05340 PF12849 PBP superfamily domain DNI88_RS05345 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS05350 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS05355 PF00005 ABC transporter DNI88_RS05360 PF01895 PhoU domain DNI88_RS05365 PF00471 Ribosomal protein L33 DNI88_RS05370 PF01812 5-formyltetrahydrofolate cyclo-ligase family DNI88_RS05375 PF01694 Rhomboid family DNI88_RS05380 PF06014 Bacterial protein of unknown function (DUF910) DNI88_RS05385 PF00480 ROK family DNI88_RS05390 PF01910 Thiamine-binding protein DNI88_RS05395 PF00753 Metallo-beta-lactamase superfamily DNI88_RS05400 PF00437 Type II/IV secretion system protein DNI88_RS05430 PF01202 Shikimate kinase DNI88_RS05435 PF01571 Aminomethyltransferase folate-binding domain DNI88_RS05435 PF08669 Glycine cleavage T-protein C-terminal barrel domain DNI88_RS05440 PF02347 Glycine cleavage system P-protein DNI88_RS05445 PF00266 Aminotransferase class-V DNI88_RS05450 PF00581 Rhodanese-like domain DNI88_RS05455 PF03099 Biotin/lipoate A/B protein ligase family DNI88_RS05470 PF00557 Metallopeptidase family M24 DNI88_RS05470 PF01321 Creatinase/Prolidase N-terminal domain DNI88_RS05475 PF08207 Elongation factor P (EF-P) KOW-like domain DNI88_RS05475 PF09285 Elongation factor P, C-terminal DNI88_RS05475 PF01132 Elongation factor P (EF-P) OB domain DNI88_RS05480 PF00364 Biotin-requiring enzyme DNI88_RS05485 PF02785 Biotin carboxylase C-terminal domain DNI88_RS05485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DNI88_RS05485 PF00289 Biotin carboxylase, N-terminal domain DNI88_RS05490 PF03780 Asp23 family, cell envelope-related function DNI88_RS05495 PF01029 NusB family DNI88_RS05500 PF02601 Exonuclease VII, large subunit DNI88_RS05500 PF13742 OB-fold nucleic acid binding domain DNI88_RS05505 PF02609 Exonuclease VII small subunit DNI88_RS05510 PF00348 Polyprenyl synthetase DNI88_RS05515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DNI88_RS05515 PF02780 Transketolase, C-terminal domain DNI88_RS05515 PF02779 Transketolase, pyrimidine binding domain DNI88_RS05520 PF01316 Arginine repressor, DNA binding domain DNI88_RS05520 PF02863 Arginine repressor, C-terminal domain DNI88_RS05525 PF13476 AAA domain DNI88_RS05530 PF01515 Phosphate acetyl/butaryl transferase DNI88_RS05535 PF00871 Acetokinase family DNI88_RS05540 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS05540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DNI88_RS05545 PF00676 Dehydrogenase E1 component DNI88_RS05550 PF02779 Transketolase, pyrimidine binding domain DNI88_RS05550 PF02780 Transketolase, C-terminal domain DNI88_RS05555 PF00364 Biotin-requiring enzyme DNI88_RS05555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DNI88_RS05555 PF02817 e3 binding domain DNI88_RS05560 PF06491 Disulphide isomerase DNI88_RS05565 PF11728 Putative aromatic acid exporter C-terminal domain DNI88_RS05565 PF06081 Aromatic acid exporter family member 1 DNI88_RS05575 PF01546 Peptidase family M20/M25/M40 DNI88_RS05575 PF07687 Peptidase dimerisation domain DNI88_RS05580 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DNI88_RS05580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DNI88_RS05605 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DNI88_RS05605 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DNI88_RS05610 PF12706 Beta-lactamase superfamily domain DNI88_RS05615 PF14748 Pyrroline-5-carboxylate reductase dimerisation DNI88_RS05615 PF03807 NADP oxidoreductase coenzyme F420-dependent DNI88_RS05625 PF00248 Aldo/keto reductase family DNI88_RS05630 PF00293 NUDIX domain DNI88_RS05635 PF01475 Ferric uptake regulator family DNI88_RS05640 PF02899 Phage integrase, N-terminal SAM-like domain DNI88_RS05640 PF00589 Phage integrase family DNI88_RS05650 PF02616 Segregation and condensation protein ScpA DNI88_RS05655 PF04079 Segregation and condensation complex subunit ScpB DNI88_RS05660 PF00849 RNA pseudouridylate synthase DNI88_RS05660 PF01479 S4 domain DNI88_RS05665 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS05665 PF00072 Response regulator receiver domain DNI88_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS05670 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS05670 PF18698 Histidine kinase sensor domain DNI88_RS05670 PF00672 HAMP domain DNI88_RS05675 PF12822 ECF transporter, substrate-specific component DNI88_RS05690 PF00270 DEAD/DEAH box helicase DNI88_RS05690 PF00271 Helicase conserved C-terminal domain DNI88_RS05695 PF01476 LysM domain DNI88_RS05705 PF00710 Asparaginase, N-terminal DNI88_RS05705 PF17763 Glutaminase/Asparaginase C-terminal domain DNI88_RS05710 PF02224 Cytidylate kinase DNI88_RS05715 PF00575 S1 RNA binding domain DNI88_RS05720 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DNI88_RS05720 PF01926 50S ribosome-binding GTPase DNI88_RS05725 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DNI88_RS05725 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DNI88_RS05730 PF00216 Bacterial DNA-binding protein DNI88_RS05740 PF01209 ubiE/COQ5 methyltransferase family DNI88_RS05745 PF00348 Polyprenyl synthetase DNI88_RS05750 PF00334 Nucleoside diphosphate kinase DNI88_RS05755 PF01264 Chorismate synthase DNI88_RS05760 PF01761 3-dehydroquinate synthase DNI88_RS05765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DNI88_RS05775 PF08858 IDEAL domain DNI88_RS05775 PF08864 UPF0302 domain DNI88_RS05780 PF07187 Protein of unknown function (DUF1405) DNI88_RS05790 PF03819 MazG nucleotide pyrophosphohydrolase domain DNI88_RS05795 PF13439 Glycosyltransferase Family 4 DNI88_RS05795 PF00534 Glycosyl transferases group 1 DNI88_RS05800 PF01743 Poly A polymerase head domain DNI88_RS05800 PF12627 Probable RNA and SrmB- binding site of polymerase A DNI88_RS05800 PF13735 tRNA nucleotidyltransferase domain 2 putative DNI88_RS05805 PF03099 Biotin/lipoate A/B protein ligase family DNI88_RS05805 PF08279 HTH domain DNI88_RS05805 PF02237 Biotin protein ligase C terminal domain DNI88_RS05810 PF13307 Helicase C-terminal domain DNI88_RS05810 PF00929 Exonuclease DNI88_RS05815 PF01336 OB-fold nucleic acid binding domain DNI88_RS05815 PF00152 tRNA synthetases class II (D, K and N) DNI88_RS05820 PF07261 Replication initiation and membrane attachment DNI88_RS05825 PF10576 Iron-sulfur binding domain of endonuclease III DNI88_RS05825 PF00730 HhH-GPD superfamily base excision DNA repair protein DNI88_RS05825 PF00633 Helix-hairpin-helix motif DNI88_RS05835 PF00912 Transglycosylase DNI88_RS05835 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS05840 PF03838 Recombination protein U DNI88_RS05850 PF06908 YspA SLOG family DNI88_RS05855 PF05103 DivIVA protein DNI88_RS05865 PF01170 Putative RNA methylase family UPF0020 DNI88_RS05865 PF02926 THUMP domain DNI88_RS05870 PF00892 EamA-like transporter family DNI88_RS05875 PF00350 Dynamin family DNI88_RS05880 PF01367 5'-3' exonuclease, C-terminal SAM fold DNI88_RS05880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DNI88_RS05890 PF02592 Putative vitamin uptake transporter DNI88_RS05895 PF10782 Zinc-finger DNI88_RS05900 PF08712 Scaffold protein Nfu/NifU N terminal DNI88_RS05900 PF13769 Virulence factor DNI88_RS05905 PF06491 Disulphide isomerase DNI88_RS05910 PF00303 Thymidylate synthase DNI88_RS05915 PF00186 Dihydrofolate reductase DNI88_RS05920 PF02645 Uncharacterised protein, DegV family COG1307 DNI88_RS05925 PF01625 Peptide methionine sulfoxide reductase DNI88_RS05930 PF01641 SelR domain DNI88_RS05935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DNI88_RS05940 PF06855 YozE SAM-like fold DNI88_RS05945 PF01471 Putative peptidoglycan binding domain DNI88_RS05945 PF03572 Peptidase family S41 DNI88_RS05945 PF17820 PDZ domain DNI88_RS05955 PF04101 Glycosyltransferase family 28 C-terminal domain DNI88_RS05955 PF03033 Glycosyltransferase family 28 N-terminal domain DNI88_RS05960 PF01569 PAP2 superfamily DNI88_RS05965 PF00072 Response regulator receiver domain DNI88_RS05965 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS05970 PF18719 ArlS sensor domain DNI88_RS05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS05970 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS05975 PF16870 2-oxoglutarate dehydrogenase C-terminal DNI88_RS05975 PF02779 Transketolase, pyrimidine binding domain DNI88_RS05975 PF00676 Dehydrogenase E1 component DNI88_RS05980 PF02817 e3 binding domain DNI88_RS05980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DNI88_RS05980 PF00364 Biotin-requiring enzyme DNI88_RS06000 PF07728 AAA domain (dynein-related subfamily) DNI88_RS06000 PF08406 CbbQ/NirQ/NorQ C-terminal DNI88_RS06005 PF00092 von Willebrand factor type A domain DNI88_RS06010 PF05525 Branched-chain amino acid transport protein DNI88_RS06015 PF02028 BCCT, betaine/carnitine/choline family transporter DNI88_RS06025 PF05816 Toxic anion resistance protein (TelA) DNI88_RS06035 PF00708 Acylphosphatase DNI88_RS06045 PF00313 'Cold-shock' DNA-binding domain DNI88_RS06055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DNI88_RS06055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DNI88_RS06060 PF01168 Alanine racemase, N-terminal domain DNI88_RS06060 PF00842 Alanine racemase, C-terminal domain DNI88_RS06065 PF01546 Peptidase family M20/M25/M40 DNI88_RS06070 PF14602 Hexapeptide repeat of succinyl-transferase DNI88_RS06070 PF00132 Bacterial transferase hexapeptide (six repeats) DNI88_RS06070 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DNI88_RS06075 PF05173 Dihydrodipicolinate reductase, C-terminus DNI88_RS06075 PF01113 Dihydrodipicolinate reductase, N-terminus DNI88_RS06080 PF00701 Dihydrodipicolinate synthetase family DNI88_RS06085 PF01118 Semialdehyde dehydrogenase, NAD binding domain DNI88_RS06085 PF02774 Semialdehyde dehydrogenase, dimerisation domain DNI88_RS06090 PF00005 ABC transporter DNI88_RS06090 PF12848 ABC transporter DNI88_RS06095 PF13509 S1 domain DNI88_RS06095 PF17783 CvfB-like winged helix domain DNI88_RS06100 PF17961 Bacterial Ig domain DNI88_RS06100 PF04650 YSIRK type signal peptide DNI88_RS06100 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DNI88_RS06100 PF02986 Fibronectin binding repeat DNI88_RS06100 PF00746 LPXTG cell wall anchor motif DNI88_RS06125 PF08439 Oligopeptidase F DNI88_RS06125 PF01432 Peptidase family M3 DNI88_RS06135 PF02388 FemAB family DNI88_RS06140 PF02388 FemAB family DNI88_RS06145 PF05343 M42 glutamyl aminopeptidase DNI88_RS06150 PF02153 Prephenate dehydrogenase DNI88_RS06150 PF01842 ACT domain DNI88_RS06155 PF11798 IMS family HHH motif DNI88_RS06155 PF11799 impB/mucB/samB family C-terminal domain DNI88_RS06155 PF00817 impB/mucB/samB family DNI88_RS06165 PF01361 Tautomerase enzyme DNI88_RS06170 PF03816 Cell envelope-related transcriptional attenuator domain DNI88_RS06175 PF01625 Peptide methionine sulfoxide reductase DNI88_RS06185 PF03706 Lysylphosphatidylglycerol synthase TM region DNI88_RS06185 PF09924 Uncharacterised conserved protein (DUF2156) DNI88_RS06190 PF01594 AI-2E family transporter DNI88_RS06200 PF02378 Phosphotransferase system, EIIC DNI88_RS06200 PF00367 phosphotransferase system, EIIB DNI88_RS06200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DNI88_RS06205 PF03123 CAT RNA binding domain DNI88_RS06205 PF00874 PRD domain DNI88_RS06210 PF01235 Sodium:alanine symporter family DNI88_RS06215 PF03989 DNA gyrase C-terminal domain, beta-propeller DNI88_RS06215 PF00521 DNA gyrase/topoisomerase IV, subunit A DNI88_RS06220 PF01751 Toprim domain DNI88_RS06220 PF00986 DNA gyrase B subunit, carboxyl terminus DNI88_RS06220 PF00204 DNA gyrase B DNI88_RS06220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS06225 PF02660 Glycerol-3-phosphate acyltransferase DNI88_RS06235 PF03061 Thioesterase superfamily DNI88_RS06240 PF00330 Aconitase family (aconitate hydratase) DNI88_RS06240 PF00694 Aconitase C-terminal domain DNI88_RS06245 PF02028 BCCT, betaine/carnitine/choline family transporter DNI88_RS06250 PF01741 Large-conductance mechanosensitive channel, MscL DNI88_RS06255 PF13476 AAA domain DNI88_RS06260 PF12320 Type 5 capsule protein repressor C-terminal domain DNI88_RS06260 PF00149 Calcineurin-like phosphoesterase DNI88_RS06265 PF07301 Protein of unknown function (DUF1453) DNI88_RS06270 PF03672 Uncharacterised protein family (UPF0154) DNI88_RS06275 PF02779 Transketolase, pyrimidine binding domain DNI88_RS06275 PF00456 Transketolase, thiamine diphosphate binding domain DNI88_RS06275 PF02780 Transketolase, C-terminal domain DNI88_RS06280 PF05979 Bacterial protein of unknown function (DUF896) DNI88_RS06290 PF00717 Peptidase S24-like DNI88_RS06290 PF01726 LexA DNA binding domain DNI88_RS06300 PF00478 IMP dehydrogenase / GMP reductase domain DNI88_RS06305 PF00253 Ribosomal protein S14p/S29e DNI88_RS06310 PF00471 Ribosomal protein L33 DNI88_RS06315 PF00324 Amino acid permease DNI88_RS06330 PF00288 GHMP kinases N terminal domain DNI88_RS06330 PF08544 GHMP kinases C terminal DNI88_RS06335 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS06340 PF01842 ACT domain DNI88_RS06340 PF00742 Homoserine dehydrogenase DNI88_RS06340 PF03447 Homoserine dehydrogenase, NAD binding domain DNI88_RS06345 PF13840 ACT domain DNI88_RS06345 PF00696 Amino acid kinase family DNI88_RS06365 PF00565 Staphylococcal nuclease homologue DNI88_RS06375 PF00565 Staphylococcal nuclease homologue DNI88_RS06395 PF03009 Glycerophosphoryl diester phosphodiesterase family DNI88_RS06415 PF03951 Glutamine synthetase, beta-Grasp domain DNI88_RS06415 PF00120 Glutamine synthetase, catalytic domain DNI88_RS06420 PF13411 MerR HTH family regulatory protein DNI88_RS06425 PF06838 Methionine gamma-lyase DNI88_RS06430 PF13167 GTP-binding GTPase N-terminal DNI88_RS06430 PF16360 GTP-binding GTPase Middle Region DNI88_RS06430 PF01926 50S ribosome-binding GTPase DNI88_RS06435 PF00255 Glutathione peroxidase DNI88_RS06440 PF12146 Serine aminopeptidase, S33 DNI88_RS06450 PF17209 Hfq protein DNI88_RS06455 PF01266 FAD dependent oxidoreductase DNI88_RS06455 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DNI88_RS06460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DNI88_RS06460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DNI88_RS06465 PF00230 Major intrinsic protein DNI88_RS06470 PF02016 LD-carboxypeptidase N-terminal domain DNI88_RS06470 PF17676 LD-carboxypeptidase C-terminal domain DNI88_RS06475 PF04309 Glycerol-3-phosphate responsive antiterminator DNI88_RS06485 PF05188 MutS domain II DNI88_RS06485 PF01624 MutS domain I DNI88_RS06485 PF05192 MutS domain III DNI88_RS06485 PF00488 MutS domain V DNI88_RS06485 PF05190 MutS family domain IV DNI88_RS06500 PF00919 Uncharacterized protein family UPF0004 DNI88_RS06500 PF01938 TRAM domain DNI88_RS06500 PF04055 Radical SAM superfamily DNI88_RS06510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS06515 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DNI88_RS06515 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DNI88_RS06515 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DNI88_RS06520 PF13277 YmdB-like protein DNI88_RS06525 PF00403 Heavy-metal-associated domain DNI88_RS06530 PF01022 Bacterial regulatory protein, arsR family DNI88_RS06540 PF00013 KH domain DNI88_RS06540 PF12072 Domain of unknown function (DUF3552) DNI88_RS06540 PF01966 HD domain DNI88_RS06545 PF00154 recA bacterial DNA recombination protein DNI88_RS06550 PF18146 Damage-inducible protein CinA KH domain DNI88_RS06550 PF02464 Competence-damaged protein DNI88_RS06550 PF00994 Probable molybdopterin binding domain DNI88_RS06555 PF01066 CDP-alcohol phosphatidyltransferase DNI88_RS06565 PF11868 Protein of unknown function (DUF3388) DNI88_RS06575 PF00675 Insulinase (Peptidase family M16) DNI88_RS06575 PF05193 Peptidase M16 inactive domain DNI88_RS06580 PF05193 Peptidase M16 inactive domain DNI88_RS06585 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS06585 PF07702 UTRA domain DNI88_RS06590 PF09397 Ftsk gamma domain DNI88_RS06590 PF17854 FtsK alpha domain DNI88_RS06590 PF01580 FtsK/SpoIIIE family DNI88_RS06595 PF00753 Metallo-beta-lactamase superfamily DNI88_RS06595 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DNI88_RS06595 PF17770 Ribonuclease J C-terminal domain DNI88_RS06600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DNI88_RS06600 PF03725 3' exoribonuclease family, domain 2 DNI88_RS06600 PF00575 S1 RNA binding domain DNI88_RS06600 PF01138 3' exoribonuclease family, domain 1 DNI88_RS06600 PF00013 KH domain DNI88_RS06605 PF00312 Ribosomal protein S15 DNI88_RS06610 PF01687 Riboflavin kinase DNI88_RS06610 PF06574 FAD synthetase DNI88_RS06615 PF16198 tRNA pseudouridylate synthase B C-terminal domain DNI88_RS06615 PF01509 TruB family pseudouridylate synthase (N terminal domain) DNI88_RS06620 PF02033 Ribosome-binding factor A DNI88_RS06630 PF04760 Translation initiation factor IF-2, N-terminal region DNI88_RS06630 PF11987 Translation-initiation factor 2 DNI88_RS06630 PF00009 Elongation factor Tu GTP binding domain DNI88_RS06635 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DNI88_RS06640 PF04296 Protein of unknown function (DUF448) DNI88_RS06645 PF00575 S1 RNA binding domain DNI88_RS06645 PF13184 NusA-like KH domain DNI88_RS06645 PF08529 NusA N-terminal domain DNI88_RS06650 PF17384 RimP C-terminal SH3 domain DNI88_RS06650 PF02576 RimP N-terminal domain DNI88_RS06655 PF14579 Helix-hairpin-helix motif DNI88_RS06655 PF11490 DNA polymerase III polC-type N-terminus II DNI88_RS06655 PF02811 PHP domain DNI88_RS06655 PF07733 Bacterial DNA polymerase III alpha NTPase domain DNI88_RS06655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DNI88_RS06655 PF00929 Exonuclease DNI88_RS06655 PF14480 DNA polymerase III polC-type N-terminus I DNI88_RS06660 PF04073 Aminoacyl-tRNA editing domain DNI88_RS06660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DNI88_RS06660 PF03129 Anticodon binding domain DNI88_RS06665 PF02163 Peptidase family M50 DNI88_RS06665 PF13180 PDZ domain DNI88_RS06670 PF13288 DXP reductoisomerase C-terminal domain DNI88_RS06670 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DNI88_RS06670 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DNI88_RS06680 PF01255 Putative undecaprenyl diphosphate synthase DNI88_RS06685 PF01765 Ribosome recycling factor DNI88_RS06690 PF00696 Amino acid kinase family DNI88_RS06695 PF00889 Elongation factor TS DNI88_RS06700 PF00318 Ribosomal protein S2 DNI88_RS06705 PF08222 CodY helix-turn-helix domain DNI88_RS06705 PF06018 CodY GAF-like domain DNI88_RS06710 PF10431 C-terminal, D2-small domain, of ClpB protein DNI88_RS06710 PF07724 AAA domain (Cdc48 subfamily) DNI88_RS06710 PF00004 ATPase family associated with various cellular activities (AAA) DNI88_RS06715 PF00227 Proteasome subunit DNI88_RS06720 PF02899 Phage integrase, N-terminal SAM-like domain DNI88_RS06720 PF00589 Phage integrase family DNI88_RS06725 PF01134 Glucose inhibited division protein A DNI88_RS06730 PF01131 DNA topoisomerase DNI88_RS06730 PF01751 Toprim domain DNI88_RS06730 PF01396 Topoisomerase DNA binding C4 zinc finger DNI88_RS06735 PF02481 DNA recombination-mediator protein A DNI88_RS06740 PF02629 CoA binding domain DNI88_RS06740 PF00549 CoA-ligase DNI88_RS06745 PF08442 ATP-grasp domain DNI88_RS06745 PF00549 CoA-ligase DNI88_RS06755 PF01351 Ribonuclease HII DNI88_RS06760 PF01926 50S ribosome-binding GTPase DNI88_RS06770 PF09586 Bacterial membrane protein YfhO DNI88_RS06805 PF01245 Ribosomal protein L19 DNI88_RS06810 PF01746 tRNA (Guanine-1)-methyltransferase DNI88_RS06815 PF01782 RimM N-terminal domain DNI88_RS06815 PF05239 PRC-barrel domain DNI88_RS06820 PF00886 Ribosomal protein S16 DNI88_RS06875 PF02978 Signal peptide binding domain DNI88_RS06875 PF02881 SRP54-type protein, helical bundle domain DNI88_RS06875 PF00448 SRP54-type protein, GTPase domain DNI88_RS06880 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DNI88_RS06885 PF02881 SRP54-type protein, helical bundle domain DNI88_RS06885 PF00448 SRP54-type protein, GTPase domain DNI88_RS06890 PF02463 RecF/RecN/SMC N terminal domain DNI88_RS06890 PF06470 SMC proteins Flexible Hinge Domain DNI88_RS06895 PF14622 Ribonuclease-III-like DNI88_RS06895 PF00035 Double-stranded RNA binding motif DNI88_RS06900 PF00550 Phosphopantetheine attachment site DNI88_RS06910 PF00698 Acyl transferase domain DNI88_RS06915 PF02504 Fatty acid synthesis protein DNI88_RS06920 PF01575 MaoC like domain DNI88_RS06925 PF00271 Helicase conserved C-terminal domain DNI88_RS06925 PF00270 DEAD/DEAH box helicase DNI88_RS06925 PF17191 RecG wedge domain DNI88_RS06930 PF03313 Serine dehydratase alpha chain DNI88_RS06935 PF03315 Serine dehydratase beta chain DNI88_RS06935 PF01842 ACT domain DNI88_RS06940 PF13684 Dihydroxyacetone kinase family DNI88_RS06940 PF02734 DAK2 domain DNI88_RS06945 PF03780 Asp23 family, cell envelope-related function DNI88_RS06950 PF00830 Ribosomal L28 family DNI88_RS06960 PF00834 Ribulose-phosphate 3 epimerase family DNI88_RS06965 PF16745 RsgA N-terminal domain DNI88_RS06965 PF03193 RsgA GTPase DNI88_RS06975 PF00067 Cytochrome P450 DNI88_RS06980 PF00069 Protein kinase domain DNI88_RS06980 PF03793 PASTA domain DNI88_RS06990 PF04055 Radical SAM superfamily DNI88_RS06995 PF01029 NusB family DNI88_RS06995 PF01189 16S rRNA methyltransferase RsmB/F DNI88_RS07000 PF00551 Formyl transferase DNI88_RS07000 PF02911 Formyl transferase, C-terminal domain DNI88_RS07005 PF01327 Polypeptide deformylase DNI88_RS07010 PF18074 Primosomal protein N C-terminal domain DNI88_RS07010 PF00271 Helicase conserved C-terminal domain DNI88_RS07010 PF17764 3′ DNA-binding domain (3′BD) DNI88_RS07010 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DNI88_RS07010 PF04851 Type III restriction enzyme, res subunit DNI88_RS07015 PF04127 DNA / pantothenate metabolism flavoprotein DNI88_RS07015 PF02441 Flavoprotein DNI88_RS07035 PF01192 RNA polymerase Rpb6 DNI88_RS07040 PF00625 Guanylate kinase DNI88_RS07045 PF05670 NFACT protein RNA binding domain DNI88_RS07055 PF00156 Phosphoribosyl transferase domain DNI88_RS07060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DNI88_RS07065 PF01180 Dihydroorotate dehydrogenase DNI88_RS07070 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DNI88_RS07070 PF00175 Oxidoreductase NAD-binding domain DNI88_RS07070 PF00970 Oxidoreductase FAD-binding domain DNI88_RS07075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DNI88_RS07075 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DNI88_RS07075 PF02142 MGS-like domain DNI88_RS07080 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DNI88_RS07080 PF00117 Glutamine amidotransferase class-I DNI88_RS07085 PF01979 Amidohydrolase family DNI88_RS07090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DNI88_RS07090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DNI88_RS07095 PF00860 Permease family DNI88_RS07100 PF00156 Phosphoribosyl transferase domain DNI88_RS07105 PF01479 S4 domain DNI88_RS07105 PF00849 RNA pseudouridylate synthase DNI88_RS07110 PF01252 Signal peptidase (SPase) II DNI88_RS07115 PF08264 Anticodon-binding domain of tRNA DNI88_RS07115 PF06827 Zinc finger found in FPG and IleRS DNI88_RS07115 PF00133 tRNA synthetases class I (I, L, M and V) DNI88_RS07120 PF05103 DivIVA protein DNI88_RS07130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS07130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS07135 PF02012 BNR/Asp-box repeat DNI88_RS07135 PF02973 Sialidase, N-terminal domain DNI88_RS07135 PF13088 BNR repeat-like domain DNI88_RS07145 PF00474 Sodium:solute symporter family DNI88_RS07150 PF00701 Dihydrodipicolinate synthetase family DNI88_RS07160 PF06800 Sugar transport protein DNI88_RS07165 PF05025 RbsD / FucU transport protein family DNI88_RS07170 PF02325 YGGT family DNI88_RS07175 PF04472 Cell division protein SepF DNI88_RS07180 PF01168 Alanine racemase, N-terminal domain DNI88_RS07185 PF02578 Multi-copper polyphenol oxidoreductase laccase DNI88_RS07190 PF00091 Tubulin/FtsZ family, GTPase domain DNI88_RS07190 PF12327 FtsZ family, C-terminal domain DNI88_RS07195 PF02491 SHS2 domain inserted in FTSA DNI88_RS07200 PF08478 POTRA domain, FtsQ-type DNI88_RS07200 PF03799 Cell division protein FtsQ DNI88_RS07205 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS07205 PF08245 Mur ligase middle domain DNI88_RS07210 PF00953 Glycosyl transferase family 4 DNI88_RS07215 PF03793 PASTA domain DNI88_RS07215 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS07215 PF03717 Penicillin-binding Protein dimerisation domain DNI88_RS07220 PF04977 Septum formation initiator DNI88_RS07225 PF01795 MraW methylase family DNI88_RS07230 PF02381 MraZ protein, putative antitoxin-like DNI88_RS07235 PF10079 Bacillithiol biosynthesis BshC DNI88_RS07240 PF13673 Acetyltransferase (GNAT) domain DNI88_RS07245 PF13419 Haloacid dehalogenase-like hydrolase DNI88_RS07250 PF05480 Staphylococcus haemolytic protein DNI88_RS07260 PF02386 Cation transport protein DNI88_RS07295 PF13610 DDE domain DNI88_RS07300 PF00027 Cyclic nucleotide-binding domain DNI88_RS07300 PF13545 Crp-like helix-turn-helix domain DNI88_RS07325 PF00403 Heavy-metal-associated domain DNI88_RS07355 PF01725 Ham1 family DNI88_RS07360 PF01177 Asp/Glu/Hydantoin racemase DNI88_RS07365 PF13183 4Fe-4S dicluster domain DNI88_RS07365 PF13085 2Fe-2S iron-sulfur cluster binding domain DNI88_RS07370 PF02910 Fumarate reductase flavoprotein C-term DNI88_RS07370 PF00890 FAD binding domain DNI88_RS07375 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DNI88_RS07380 PF01541 GIY-YIG catalytic domain DNI88_RS07380 PF02151 UvrB/uvrC motif DNI88_RS07380 PF08459 UvrC Helix-hairpin-helix N-terminal DNI88_RS07385 PF00085 Thioredoxin DNI88_RS07390 PF00488 MutS domain V DNI88_RS07390 PF01713 Smr domain DNI88_RS07395 PF02811 PHP domain DNI88_RS07395 PF14716 Helix-hairpin-helix domain DNI88_RS07395 PF14791 DNA polymerase beta thumb DNI88_RS07405 PF05164 Cell division protein ZapA DNI88_RS07410 PF11858 Domain of unknown function (DUF3378) DNI88_RS07410 PF01351 Ribonuclease HII DNI88_RS07420 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DNI88_RS07420 PF03484 tRNA synthetase B5 domain DNI88_RS07420 PF03483 B3/4 domain DNI88_RS07420 PF03147 Ferredoxin-fold anticodon binding domain DNI88_RS07420 PF01588 Putative tRNA binding domain DNI88_RS07425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DNI88_RS07425 PF01409 tRNA synthetases class II core domain (F) DNI88_RS07430 PF00588 SpoU rRNA Methylase family DNI88_RS07430 PF08032 RNA 2'-O ribose methyltransferase substrate binding DNI88_RS07435 PF01783 Ribosomal L32p protein family DNI88_RS07445 PF05636 HIGH Nucleotidyl Transferase DNI88_RS07450 PF01467 Cytidylyltransferase-like DNI88_RS07465 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DNI88_RS07470 PF03009 Glycerophosphoryl diester phosphodiesterase family DNI88_RS07475 PF06133 Control of competence regulator ComK, YlbF/YmcA DNI88_RS07490 PF01040 UbiA prenyltransferase family DNI88_RS07495 PF02628 Cytochrome oxidase assembly protein DNI88_RS07500 PF02436 Conserved carboxylase domain DNI88_RS07500 PF00364 Biotin-requiring enzyme DNI88_RS07500 PF00682 HMGL-like DNI88_RS07500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DNI88_RS07500 PF00289 Biotin carboxylase, N-terminal domain DNI88_RS07500 PF02785 Biotin carboxylase C-terminal domain DNI88_RS07525 PF01098 Cell cycle protein DNI88_RS07530 PF07408 Protein of unknown function (DUF1507) DNI88_RS07540 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) DNI88_RS07545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DNI88_RS07550 PF00009 Elongation factor Tu GTP binding domain DNI88_RS07550 PF14492 Elongation Factor G, domain II DNI88_RS07550 PF00679 Elongation factor G C-terminus DNI88_RS07550 PF03144 Elongation factor Tu domain 2 DNI88_RS07560 PF00459 Inositol monophosphatase family DNI88_RS07565 PF06335 Protein of unknown function (DUF1054) DNI88_RS07580 PF13416 Bacterial extracellular solute-binding protein DNI88_RS07585 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS07595 PF08402 TOBE domain DNI88_RS07595 PF00005 ABC transporter DNI88_RS07605 PF05256 Uncharacterised protein family (UPF0223) DNI88_RS07610 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS07610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DNI88_RS07615 PF00364 Biotin-requiring enzyme DNI88_RS07615 PF02817 e3 binding domain DNI88_RS07615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DNI88_RS07620 PF02780 Transketolase, C-terminal domain DNI88_RS07620 PF02779 Transketolase, pyrimidine binding domain DNI88_RS07625 PF00676 Dehydrogenase E1 component DNI88_RS07635 PF01327 Polypeptide deformylase DNI88_RS07645 PF07288 Protein of unknown function (DUF1447) DNI88_RS07650 PF00753 Metallo-beta-lactamase superfamily DNI88_RS07650 PF17770 Ribonuclease J C-terminal domain DNI88_RS07650 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DNI88_RS07655 PF02080 TrkA-C domain DNI88_RS07655 PF02254 TrkA-N domain DNI88_RS07660 PF02322 Cytochrome bd terminal oxidase subunit II DNI88_RS07665 PF01654 Cytochrome bd terminal oxidase subunit I DNI88_RS07670 PF03960 ArsC family DNI88_RS07680 PF00391 PEP-utilising enzyme, mobile domain DNI88_RS07680 PF05524 PEP-utilising enzyme, N-terminal DNI88_RS07680 PF02896 PEP-utilising enzyme, TIM barrel domain DNI88_RS07685 PF00381 PTS HPr component phosphorylation site DNI88_RS07695 PF10672 S-adenosylmethionine-dependent methyltransferase DNI88_RS07695 PF17785 PUA-like domain DNI88_RS07710 PF00005 ABC transporter DNI88_RS07720 PF02844 Phosphoribosylglycinamide synthetase, N domain DNI88_RS07720 PF02843 Phosphoribosylglycinamide synthetase, C domain DNI88_RS07720 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DNI88_RS07725 PF01808 AICARFT/IMPCHase bienzyme DNI88_RS07725 PF02142 MGS-like domain DNI88_RS07730 PF00551 Formyl transferase DNI88_RS07735 PF00586 AIR synthase related protein, N-terminal domain DNI88_RS07735 PF02769 AIR synthase related protein, C-terminal domain DNI88_RS07740 PF00156 Phosphoribosyl transferase domain DNI88_RS07745 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DNI88_RS07745 PF02769 AIR synthase related protein, C-terminal domain DNI88_RS07745 PF00586 AIR synthase related protein, N-terminal domain DNI88_RS07755 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DNI88_RS07760 PF01259 SAICAR synthetase DNI88_RS07765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS07765 PF02222 ATP-grasp domain DNI88_RS07765 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DNI88_RS07770 PF00731 AIR carboxylase DNI88_RS07775 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DNI88_RS07775 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DNI88_RS07780 PF00175 Oxidoreductase NAD-binding domain DNI88_RS07780 PF00042 Globin DNI88_RS07780 PF00970 Oxidoreductase FAD-binding domain DNI88_RS07790 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DNI88_RS07790 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DNI88_RS07795 PF00115 Cytochrome C and Quinol oxidase polypeptide I DNI88_RS07800 PF00510 Cytochrome c oxidase subunit III DNI88_RS07805 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DNI88_RS07810 PF01156 Inosine-uridine preferring nucleoside hydrolase DNI88_RS07815 PF03413 Peptidase propeptide and YPEB domain DNI88_RS07830 PF00005 ABC transporter DNI88_RS07840 PF01061 ABC-2 type transporter DNI88_RS07850 PF00535 Glycosyl transferase family 2 DNI88_RS07860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DNI88_RS07860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DNI88_RS07860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DNI88_RS07865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DNI88_RS07865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DNI88_RS07865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DNI88_RS07865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DNI88_RS07870 PF03816 Cell envelope-related transcriptional attenuator domain DNI88_RS07875 PF10804 Protein of unknown function (DUF2538) DNI88_RS07880 PF13673 Acetyltransferase (GNAT) domain DNI88_RS07885 PF13457 GW (Gly-Tryp) dipeptide domain DNI88_RS07885 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DNI88_RS07885 PF01510 N-acetylmuramoyl-L-alanine amidase DNI88_RS07885 PF13457 GW (Gly-Tryp) dipeptide domain DNI88_RS07885 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DNI88_RS07885 PF01510 N-acetylmuramoyl-L-alanine amidase DNI88_RS07890 PF01757 Acyltransferase family DNI88_RS07895 PF01757 Acyltransferase family DNI88_RS07900 PF00155 Aminotransferase class I and II DNI88_RS07905 PF00378 Enoyl-CoA hydratase/isomerase DNI88_RS07910 PF12697 Alpha/beta hydrolase family DNI88_RS07915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DNI88_RS07915 PF16582 Middle domain of thiamine pyrophosphate DNI88_RS07915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS07920 PF00425 chorismate binding enzyme DNI88_RS07925 PF01040 UbiA prenyltransferase family DNI88_RS07930 PF03649 Uncharacterised protein family (UPF0014) DNI88_RS07935 PF00005 ABC transporter DNI88_RS07955 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) DNI88_RS07960 PF10437 Bacterial lipoate protein ligase C-terminus DNI88_RS07960 PF03099 Biotin/lipoate A/B protein ligase family DNI88_RS08035 PF13280 WYL domain DNI88_RS08035 PF08279 HTH domain DNI88_RS08040 PF01636 Phosphotransferase enzyme family DNI88_RS08045 PF00583 Acetyltransferase (GNAT) family DNI88_RS08050 PF04439 Streptomycin adenylyltransferase DNI88_RS08055 PF08241 Methyltransferase domain DNI88_RS08080 PF00398 Ribosomal RNA adenine dimethylase DNI88_RS08085 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) DNI88_RS08095 PF01131 DNA topoisomerase DNI88_RS08095 PF01751 Toprim domain DNI88_RS08100 PF00186 Dihydrofolate reductase DNI88_RS08120 PF00239 Resolvase, N terminal domain DNI88_RS08120 PF02796 Helix-turn-helix domain of resolvase DNI88_RS08130 PF08708 Primase C terminal 1 (PriCT-1) DNI88_RS08140 PF00149 Calcineurin-like phosphoesterase DNI88_RS08140 PF02872 5'-nucleotidase, C-terminal domain DNI88_RS08150 PF00501 AMP-binding enzyme DNI88_RS08150 PF13193 AMP-binding enzyme C-terminal domain DNI88_RS08155 PF03062 MBOAT, membrane-bound O-acyltransferase family DNI88_RS08160 PF00550 Phosphopantetheine attachment site DNI88_RS08165 PF04914 DltD protein DNI88_RS08170 PF02386 Cation transport protein DNI88_RS08175 PF13180 PDZ domain DNI88_RS08180 PF03741 Integral membrane protein TerC family DNI88_RS08185 PF00009 Elongation factor Tu GTP binding domain DNI88_RS08185 PF03144 Elongation factor Tu domain 2 DNI88_RS08185 PF16658 Class II release factor RF3, C-terminal domain DNI88_RS08195 PF01225 Mur ligase family, catalytic domain DNI88_RS08195 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS08195 PF08245 Mur ligase middle domain DNI88_RS08200 PF04101 Glycosyltransferase family 28 C-terminal domain DNI88_RS08200 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase DNI88_RS08205 PF07690 Major Facilitator Superfamily DNI88_RS08210 PF00884 Sulfatase DNI88_RS08210 PF16347 Domain of unknown function (DUF4976) DNI88_RS08215 PF03609 PTS system sorbose-specific iic component DNI88_RS08220 PF03613 PTS system mannose/fructose/sorbose family IID component DNI88_RS08230 PF00756 Putative esterase DNI88_RS08235 PF01235 Sodium:alanine symporter family DNI88_RS08240 PF01594 AI-2E family transporter DNI88_RS08250 PF02080 TrkA-C domain DNI88_RS08250 PF02254 TrkA-N domain DNI88_RS08250 PF00999 Sodium/hydrogen exchanger family DNI88_RS08255 PF01769 Divalent cation transporter DNI88_RS08255 PF00571 CBS domain DNI88_RS08255 PF03448 MgtE intracellular N domain DNI88_RS08260 PF00849 RNA pseudouridylate synthase DNI88_RS08265 PF01513 ATP-NAD kinase DNI88_RS08270 PF04607 Region found in RelA / SpoT proteins DNI88_RS08285 PF01152 Bacterial-like globin DNI88_RS08295 PF01435 Peptidase family M48 DNI88_RS08300 PF01432 Peptidase family M3 DNI88_RS08300 PF08439 Oligopeptidase F DNI88_RS08320 PF05389 Negative regulator of genetic competence (MecA) DNI88_RS08325 PF03960 ArsC family DNI88_RS08330 PF00579 tRNA synthetases class I (W and Y) DNI88_RS08335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DNI88_RS08340 PF00005 ABC transporter DNI88_RS08340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS08345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DNI88_RS08345 PF00005 ABC transporter DNI88_RS08350 PF12911 N-terminal TM domain of oligopeptide transport permease C DNI88_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS08355 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS08365 PF00109 Beta-ketoacyl synthase, N-terminal domain DNI88_RS08365 PF02801 Beta-ketoacyl synthase, C-terminal domain DNI88_RS08370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DNI88_RS08370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DNI88_RS08380 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DNI88_RS08385 PF10431 C-terminal, D2-small domain, of ClpB protein DNI88_RS08385 PF00004 ATPase family associated with various cellular activities (AAA) DNI88_RS08385 PF02861 Clp amino terminal domain, pathogenicity island component DNI88_RS08385 PF17871 AAA lid domain DNI88_RS08385 PF07724 AAA domain (Cdc48 subfamily) DNI88_RS08390 PF01757 Acyltransferase family DNI88_RS08395 PF01883 Iron-sulfur cluster assembly protein DNI88_RS08405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DNI88_RS08405 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS08415 PF07457 Protein of unknown function (DUF1516) DNI88_RS08420 PF01557 Fumarylacetoacetate (FAA) hydrolase family DNI88_RS08425 PF12705 PD-(D/E)XK nuclease superfamily DNI88_RS08425 PF00580 UvrD/REP helicase N-terminal domain DNI88_RS08425 PF13361 UvrD-like helicase C-terminal domain DNI88_RS08430 PF12705 PD-(D/E)XK nuclease superfamily DNI88_RS08430 PF13361 UvrD-like helicase C-terminal domain DNI88_RS08435 PF10502 Signal peptidase, peptidase S26 DNI88_RS08440 PF10502 Signal peptidase, peptidase S26 DNI88_RS08445 PF00342 Phosphoglucose isomerase DNI88_RS08450 PF00764 Arginosuccinate synthase DNI88_RS08455 PF00206 Lyase DNI88_RS08455 PF14698 Argininosuccinate lyase C-terminal DNI88_RS08460 PF03009 Glycerophosphoryl diester phosphodiesterase family DNI88_RS08465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DNI88_RS08465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DNI88_RS08470 PF00202 Aminotransferase class-III DNI88_RS08475 PF00171 Aldehyde dehydrogenase family DNI88_RS08480 PF00575 S1 RNA binding domain DNI88_RS08490 PF00313 'Cold-shock' DNA-binding domain DNI88_RS08500 PF03069 Acetamidase/Formamidase family DNI88_RS08510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DNI88_RS08515 PF08810 Kinase associated protein B DNI88_RS08520 PF13244 Domain of unknown function (DUF4040) DNI88_RS08520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DNI88_RS08520 PF00361 Proton-conducting membrane transporter DNI88_RS08525 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DNI88_RS08530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DNI88_RS08535 PF00361 Proton-conducting membrane transporter DNI88_RS08540 PF01899 Na+/H+ ion antiporter subunit DNI88_RS08545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DNI88_RS08550 PF03334 Na+/H+ antiporter subunit DNI88_RS08555 PF03061 Thioesterase superfamily DNI88_RS08560 PF13726 Na+-H+ antiporter family DNI88_RS08560 PF03553 Na+/H+ antiporter family DNI88_RS08565 PF00883 Cytosol aminopeptidase family, catalytic domain DNI88_RS08565 PF02789 Cytosol aminopeptidase family, N-terminal domain DNI88_RS08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS08575 PF01521 Iron-sulphur cluster biosynthesis DNI88_RS08580 PF07293 Protein of unknown function (DUF1450) DNI88_RS08585 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS08590 PF07315 Protein of unknown function (DUF1462) DNI88_RS08595 PF01106 NifU-like domain DNI88_RS08600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS08600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNI88_RS08605 PF13344 Haloacid dehalogenase-like hydrolase DNI88_RS08610 PF01934 Protein of unknown function DUF86 DNI88_RS08620 PF06265 Protein of unknown function (DUF1027) DNI88_RS08625 PF04055 Radical SAM superfamily DNI88_RS08625 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DNI88_RS08630 PF02872 5'-nucleotidase, C-terminal domain DNI88_RS08635 PF01925 Sulfite exporter TauE/SafE DNI88_RS08640 PF01904 Protein of unknown function DUF72 DNI88_RS08655 PF01595 Cyclin M transmembrane N-terminal domain DNI88_RS08655 PF03471 Transporter associated domain DNI88_RS08655 PF00571 CBS domain DNI88_RS08665 PF01458 Uncharacterized protein family (UPF0051) DNI88_RS08670 PF01592 NifU-like N terminal domain DNI88_RS08675 PF00266 Aminotransferase class-V DNI88_RS08680 PF01458 Uncharacterized protein family (UPF0051) DNI88_RS08685 PF00005 ABC transporter DNI88_RS08695 PF03180 NLPA lipoprotein DNI88_RS08700 PF03180 NLPA lipoprotein DNI88_RS08705 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS08710 PF00005 ABC transporter DNI88_RS08710 PF09383 NIL domain DNI88_RS08715 PF00085 Thioredoxin DNI88_RS08720 PF01751 Toprim domain DNI88_RS08725 PF01597 Glycine cleavage H-protein DNI88_RS08730 PF03960 ArsC family DNI88_RS08735 PF00085 Thioredoxin DNI88_RS08745 PF01487 Type I 3-dehydroquinase DNI88_RS08750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DNI88_RS08750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DNI88_RS08755 PF02566 OsmC-like protein DNI88_RS08770 PF00144 Beta-lactamase DNI88_RS08790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DNI88_RS08805 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DNI88_RS08815 PF01668 SmpB protein DNI88_RS08820 PF08206 Ribonuclease B OB domain DNI88_RS08820 PF00773 RNB domain DNI88_RS08820 PF00575 S1 RNA binding domain DNI88_RS08820 PF17876 Cold shock domain DNI88_RS08825 PF12146 Serine aminopeptidase, S33 DNI88_RS08830 PF03840 Preprotein translocase SecG subunit DNI88_RS08840 PF03952 Enolase, N-terminal domain DNI88_RS08840 PF00113 Enolase, C-terminal TIM barrel domain DNI88_RS08845 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DNI88_RS08845 PF01676 Metalloenzyme superfamily DNI88_RS08855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DNI88_RS08855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNI88_RS08860 PF04198 Putative sugar-binding domain DNI88_RS08875 PF01370 NAD dependent epimerase/dehydratase family DNI88_RS08875 PF08338 Domain of unknown function (DUF1731) DNI88_RS08885 PF00574 Clp protease DNI88_RS08895 PF10298 WhiA N-terminal LAGLIDADG-like domain DNI88_RS08895 PF14527 WhiA LAGLIDADG-like domain DNI88_RS08895 PF02650 WhiA C-terminal HTH domain DNI88_RS08900 PF01933 Uncharacterised protein family UPF0052 DNI88_RS08905 PF03668 P-loop ATPase protein family DNI88_RS08910 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS08920 PF14602 Hexapeptide repeat of succinyl-transferase DNI88_RS08925 PF01790 Prolipoprotein diacylglyceryl transferase DNI88_RS08930 PF02603 HPr Serine kinase N terminus DNI88_RS08930 PF07475 HPr Serine kinase C-terminal domain DNI88_RS08940 PF00005 ABC transporter DNI88_RS08940 PF17755 UvrA DNA-binding domain DNI88_RS08940 PF17760 UvrA interaction domain DNI88_RS08945 PF00271 Helicase conserved C-terminal domain DNI88_RS08945 PF04851 Type III restriction enzyme, res subunit DNI88_RS08945 PF02151 UvrB/uvrC motif DNI88_RS08945 PF17757 UvrB interaction domain DNI88_RS08945 PF12344 Ultra-violet resistance protein B DNI88_RS08965 PF07517 SecA DEAD-like domain DNI88_RS08965 PF07516 SecA Wing and Scaffold domain DNI88_RS08965 PF02810 SEC-C motif DNI88_RS08965 PF01043 SecA preprotein cross-linking domain DNI88_RS08970 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DNI88_RS08970 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DNI88_RS08980 PF04851 Type III restriction enzyme, res subunit DNI88_RS08980 PF00271 Helicase conserved C-terminal domain DNI88_RS08985 PF02645 Uncharacterised protein, DegV family COG1307 DNI88_RS08990 PF09186 Domain of unknown function (DUF1949) DNI88_RS08990 PF01205 Uncharacterized protein family UPF0029 DNI88_RS08995 PF00953 Glycosyl transferase family 4 DNI88_RS09000 PF07694 5TMR of 5TMR-LYT DNI88_RS09000 PF00990 Diguanylate cyclase, GGDEF domain DNI88_RS09015 PF07687 Peptidase dimerisation domain DNI88_RS09015 PF01546 Peptidase family M20/M25/M40 DNI88_RS09020 PF02595 Glycerate kinase family DNI88_RS09025 PF11009 Protein of unknown function (DUF2847) DNI88_RS09040 PF01565 FAD binding domain DNI88_RS09040 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DNI88_RS09050 PF00268 Ribonucleotide reductase, small chain DNI88_RS09055 PF08343 Ribonucleotide reductase N-terminal DNI88_RS09055 PF00317 Ribonucleotide reductase, all-alpha domain DNI88_RS09055 PF02867 Ribonucleotide reductase, barrel domain DNI88_RS09060 PF07972 NrdI Flavodoxin like DNI88_RS09070 PF14489 QueF-like protein DNI88_RS09090 PF00854 POT family DNI88_RS09095 PF00854 POT family DNI88_RS09100 PF00781 Diacylglycerol kinase catalytic domain DNI88_RS09105 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DNI88_RS09110 PF00155 Aminotransferase class I and II DNI88_RS09115 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS09120 PF00571 CBS domain DNI88_RS09120 PF00005 ABC transporter DNI88_RS09125 PF16124 RecQ zinc-binding DNI88_RS09125 PF00270 DEAD/DEAH box helicase DNI88_RS09125 PF00570 HRDC domain DNI88_RS09125 PF09382 RQC domain DNI88_RS09125 PF00271 Helicase conserved C-terminal domain DNI88_RS09130 PF12848 ABC transporter DNI88_RS09130 PF00005 ABC transporter DNI88_RS09130 PF16326 ABC transporter C-terminal domain DNI88_RS09135 PF02535 ZIP Zinc transporter DNI88_RS09150 PF00535 Glycosyl transferase family 2 DNI88_RS09155 PF00884 Sulfatase DNI88_RS09165 PF02682 Carboxyltransferase domain, subdomain C and D DNI88_RS09180 PF04715 Anthranilate synthase component I, N terminal region DNI88_RS09180 PF00425 chorismate binding enzyme DNI88_RS09180 PF00117 Glutamine amidotransferase class-I DNI88_RS09185 PF00117 Glutamine amidotransferase class-I DNI88_RS09190 PF06508 Queuosine biosynthesis protein QueC DNI88_RS09195 PF01242 6-pyruvoyl tetrahydropterin synthase DNI88_RS09200 PF04055 Radical SAM superfamily DNI88_RS09215 PF00535 Glycosyl transferase family 2 DNI88_RS09220 PF01595 Cyclin M transmembrane N-terminal domain DNI88_RS09220 PF00571 CBS domain DNI88_RS09220 PF03471 Transporter associated domain DNI88_RS09225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS09225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DNI88_RS09230 PF00294 pfkB family carbohydrate kinase DNI88_RS09235 PF00455 DeoR C terminal sensor domain DNI88_RS09235 PF08220 DeoR-like helix-turn-helix domain DNI88_RS09255 PF04073 Aminoacyl-tRNA editing domain DNI88_RS09260 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS09265 PF07690 Major Facilitator Superfamily DNI88_RS09280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DNI88_RS09280 PF00056 lactate/malate dehydrogenase, NAD binding domain DNI88_RS09300 PF00248 Aldo/keto reductase family DNI88_RS09305 PF07683 Cobalamin synthesis protein cobW C-terminal domain DNI88_RS09305 PF02492 CobW/HypB/UreG, nucleotide-binding domain DNI88_RS09310 PF01047 MarR family DNI88_RS09315 PF00664 ABC transporter transmembrane region DNI88_RS09315 PF00005 ABC transporter DNI88_RS09320 PF00664 ABC transporter transmembrane region DNI88_RS09320 PF00005 ABC transporter DNI88_RS09325 PF02673 Bacitracin resistance protein BacA DNI88_RS09335 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DNI88_RS09340 PF03641 Possible lysine decarboxylase DNI88_RS09370 PF04306 Protein of unknown function (DUF456) DNI88_RS09375 PF07690 Major Facilitator Superfamily DNI88_RS09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DNI88_RS09380 PF03466 LysR substrate binding domain DNI88_RS09395 PF01709 Transcriptional regulator DNI88_RS09400 PF00899 ThiF family DNI88_RS09405 PF05690 Thiazole biosynthesis protein ThiG DNI88_RS09415 PF02581 Thiamine monophosphate synthase DNI88_RS09425 PF01476 LysM domain DNI88_RS09425 PF05257 CHAP domain DNI88_RS09430 PF01384 Phosphate transporter family DNI88_RS09435 PF01865 Protein of unknown function DUF47 DNI88_RS09440 PF02687 FtsX-like permease family DNI88_RS09445 PF00005 ABC transporter DNI88_RS09450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS09455 PF00072 Response regulator receiver domain DNI88_RS09455 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS09460 PF01370 NAD dependent epimerase/dehydratase family DNI88_RS09465 PF13302 Acetyltransferase (GNAT) domain DNI88_RS09480 PF07690 Major Facilitator Superfamily DNI88_RS09490 PF01032 FecCD transport family DNI88_RS09495 PF01032 FecCD transport family DNI88_RS09500 PF00005 ABC transporter DNI88_RS09505 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DNI88_RS09505 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DNI88_RS09510 PF01773 Na+ dependent nucleoside transporter N-terminus DNI88_RS09510 PF07662 Na+ dependent nucleoside transporter C-terminus DNI88_RS09520 PF07664 Ferrous iron transport protein B C terminus DNI88_RS09520 PF17910 FeoB cytosolic helical domain DNI88_RS09520 PF02421 Ferrous iron transport protein B DNI88_RS09520 PF07670 Nucleoside recognition DNI88_RS09530 PF00005 ABC transporter DNI88_RS09530 PF00664 ABC transporter transmembrane region DNI88_RS09535 PF00768 D-alanyl-D-alanine carboxypeptidase DNI88_RS09535 PF07943 Penicillin-binding protein 5, C-terminal domain DNI88_RS09550 PF01467 Cytidylyltransferase-like DNI88_RS09555 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DNI88_RS09560 PF01061 ABC-2 type transporter DNI88_RS09565 PF00005 ABC transporter DNI88_RS09570 PF03808 Glycosyl transferase WecB/TagA/CpsF family DNI88_RS09585 PF02195 ParB-like nuclease domain DNI88_RS09590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DNI88_RS09590 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DNI88_RS09595 PF03328 HpcH/HpaI aldolase/citrate lyase family DNI88_RS09600 PF04183 IucA / IucC family DNI88_RS09600 PF06276 Ferric iron reductase FhuF-like transporter DNI88_RS09605 PF06276 Ferric iron reductase FhuF-like transporter DNI88_RS09605 PF04183 IucA / IucC family DNI88_RS09610 PF00083 Sugar (and other) transporter DNI88_RS09610 PF07690 Major Facilitator Superfamily DNI88_RS09615 PF06276 Ferric iron reductase FhuF-like transporter DNI88_RS09615 PF04183 IucA / IucC family DNI88_RS09620 PF02423 Ornithine cyclodeaminase/mu-crystallin family DNI88_RS09625 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS09630 PF01497 Periplasmic binding protein DNI88_RS09635 PF01032 FecCD transport family DNI88_RS09640 PF01032 FecCD transport family DNI88_RS09645 PF18357 Diphteria toxin repressor SH3 domain DNI88_RS09645 PF01325 Iron dependent repressor, N-terminal DNA binding domain DNI88_RS09645 PF02742 Iron dependent repressor, metal binding and dimerisation domain DNI88_RS09650 PF00005 ABC transporter DNI88_RS09655 PF00950 ABC 3 transport family DNI88_RS09660 PF01297 Zinc-uptake complex component A periplasmic DNI88_RS09665 PF03334 Na+/H+ antiporter subunit DNI88_RS09670 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DNI88_RS09675 PF01899 Na+/H+ ion antiporter subunit DNI88_RS09680 PF00361 Proton-conducting membrane transporter DNI88_RS09685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DNI88_RS09690 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DNI88_RS09695 PF13244 Domain of unknown function (DUF4040) DNI88_RS09695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DNI88_RS09695 PF00361 Proton-conducting membrane transporter DNI88_RS09745 PF13419 Haloacid dehalogenase-like hydrolase DNI88_RS09750 PF01032 FecCD transport family DNI88_RS09755 PF01497 Periplasmic binding protein DNI88_RS09760 PF02416 mttA/Hcf106 family DNI88_RS09765 PF00902 Sec-independent protein translocase protein (TatC) DNI88_RS09770 PF00750 tRNA synthetases class I (R) DNI88_RS09770 PF05746 DALR anticodon binding domain DNI88_RS09770 PF03485 Arginyl tRNA synthetase N terminal domain DNI88_RS09780 PF08741 YwhD family DNI88_RS09785 PF01966 HD domain DNI88_RS09795 PF07293 Protein of unknown function (DUF1450) DNI88_RS09845 PF00589 Phage integrase family DNI88_RS09845 PF02920 DNA binding domain of tn916 integrase DNI88_RS09850 PF09035 Excisionase from transposon Tn916 DNI88_RS09875 PF03764 Elongation factor G, domain IV DNI88_RS09875 PF00009 Elongation factor Tu GTP binding domain DNI88_RS09875 PF00679 Elongation factor G C-terminus DNI88_RS09875 PF14492 Elongation Factor G, domain II DNI88_RS09890 PF00877 NlpC/P60 family DNI88_RS09920 PF18106 Rolling Circle replication initiation protein N-terminal domain DNI88_RS09920 PF02486 Replication initiation factor DNI88_RS09940 PF06125 Bacterial protein of unknown function (DUF961) DNI88_RS09960 PF00939 Sodium:sulfate symporter transmembrane region DNI88_RS09980 PF06778 Chlorite dismutase DNI88_RS09985 PF01515 Phosphate acetyl/butaryl transferase DNI88_RS09990 PF03099 Biotin/lipoate A/B protein ligase family DNI88_RS10010 PF01451 Low molecular weight phosphotyrosine protein phosphatase DNI88_RS10015 PF02040 Arsenical pump membrane protein DNI88_RS10020 PF01022 Bacterial regulatory protein, arsR family DNI88_RS10025 PF07690 Major Facilitator Superfamily DNI88_RS10040 PF04235 Protein of unknown function (DUF418) DNI88_RS10055 PF04241 Protein of unknown function (DUF423) DNI88_RS10065 PF03167 Uracil DNA glycosylase superfamily DNI88_RS10070 PF08543 Phosphomethylpyrimidine kinase DNI88_RS10085 PF00108 Thiolase, N-terminal domain DNI88_RS10085 PF02803 Thiolase, C-terminal domain DNI88_RS10090 PF13193 AMP-binding enzyme C-terminal domain DNI88_RS10090 PF00501 AMP-binding enzyme DNI88_RS10095 PF00300 Histidine phosphatase superfamily (branch 1) DNI88_RS10120 PF00005 ABC transporter DNI88_RS10130 PF04055 Radical SAM superfamily DNI88_RS10160 PF08546 Ketopantoate reductase PanE/ApbA C terminal DNI88_RS10160 PF02558 Ketopantoate reductase PanE/ApbA DNI88_RS10170 PF07690 Major Facilitator Superfamily DNI88_RS10180 PF01613 Flavin reductase like domain DNI88_RS10185 PF01380 SIS domain DNI88_RS10190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DNI88_RS10195 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DNI88_RS10200 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DNI88_RS10205 PF02378 Phosphotransferase system, EIIC DNI88_RS10205 PF00367 phosphotransferase system, EIIB DNI88_RS10205 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DNI88_RS10210 PF01418 Helix-turn-helix domain, rpiR family DNI88_RS10210 PF01380 SIS domain DNI88_RS10220 PF02585 GlcNAc-PI de-N-acetylase DNI88_RS10225 PF02649 Type I GTP cyclohydrolase folE2 DNI88_RS10230 PF02687 FtsX-like permease family DNI88_RS10230 PF12704 MacB-like periplasmic core domain DNI88_RS10230 PF00005 ABC transporter DNI88_RS10250 PF14437 MafB19-like deaminase DNI88_RS10255 PF01712 Deoxynucleoside kinase DNI88_RS10260 PF01712 Deoxynucleoside kinase DNI88_RS10265 PF13419 Haloacid dehalogenase-like hydrolase DNI88_RS10270 PF03372 Endonuclease/Exonuclease/phosphatase family DNI88_RS10275 PF01063 Amino-transferase class IV DNI88_RS10290 PF01797 Transposase IS200 like DNI88_RS10295 PF01370 NAD dependent epimerase/dehydratase family DNI88_RS10300 PF00155 Aminotransferase class I and II DNI88_RS10305 PF07687 Peptidase dimerisation domain DNI88_RS10305 PF01546 Peptidase family M20/M25/M40 DNI88_RS10310 PF03306 Alpha-acetolactate decarboxylase DNI88_RS10315 PF03143 Elongation factor Tu C-terminal domain DNI88_RS10315 PF00009 Elongation factor Tu GTP binding domain DNI88_RS10315 PF03144 Elongation factor Tu domain 2 DNI88_RS10320 PF03764 Elongation factor G, domain IV DNI88_RS10320 PF00009 Elongation factor Tu GTP binding domain DNI88_RS10320 PF03144 Elongation factor Tu domain 2 DNI88_RS10320 PF00679 Elongation factor G C-terminus DNI88_RS10320 PF14492 Elongation Factor G, domain II DNI88_RS10325 PF00177 Ribosomal protein S7p/S5e DNI88_RS10330 PF00164 Ribosomal protein S12/S23 DNI88_RS10335 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DNI88_RS10340 PF04998 RNA polymerase Rpb1, domain 5 DNI88_RS10340 PF05000 RNA polymerase Rpb1, domain 4 DNI88_RS10340 PF04983 RNA polymerase Rpb1, domain 3 DNI88_RS10340 PF00623 RNA polymerase Rpb1, domain 2 DNI88_RS10340 PF04997 RNA polymerase Rpb1, domain 1 DNI88_RS10345 PF04563 RNA polymerase beta subunit DNI88_RS10345 PF04561 RNA polymerase Rpb2, domain 2 DNI88_RS10345 PF04565 RNA polymerase Rpb2, domain 3 DNI88_RS10345 PF10385 RNA polymerase beta subunit external 1 domain DNI88_RS10345 PF04560 RNA polymerase Rpb2, domain 7 DNI88_RS10345 PF00562 RNA polymerase Rpb2, domain 6 DNI88_RS10350 PF05175 Methyltransferase small domain DNI88_RS10355 PF16320 Ribosomal protein L7/L12 dimerisation domain DNI88_RS10355 PF00542 Ribosomal protein L7/L12 C-terminal domain DNI88_RS10360 PF00466 Ribosomal protein L10 DNI88_RS10365 PF00687 Ribosomal protein L1p/L10e family DNI88_RS10370 PF00298 Ribosomal protein L11, RNA binding domain DNI88_RS10370 PF03946 Ribosomal protein L11, N-terminal domain DNI88_RS10375 PF02357 Transcription termination factor nusG DNI88_RS10375 PF00467 KOW motif DNI88_RS10380 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DNI88_RS10385 PF00471 Ribosomal protein L33 DNI88_RS10400 PF08032 RNA 2'-O ribose methyltransferase substrate binding DNI88_RS10400 PF00588 SpoU rRNA Methylase family DNI88_RS10405 PF00636 Ribonuclease III domain DNI88_RS10410 PF01406 tRNA synthetases class I (C) catalytic domain DNI88_RS10410 PF09190 DALR domain DNI88_RS10415 PF00132 Bacterial transferase hexapeptide (six repeats) DNI88_RS10420 PF00749 tRNA synthetases class I (E and Q), catalytic domain DNI88_RS10425 PF02542 YgbB family DNI88_RS10430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DNI88_RS10440 PF18073 Rubredoxin metal binding domain DNI88_RS10450 PF00005 ABC transporter DNI88_RS10475 PF07724 AAA domain (Cdc48 subfamily) DNI88_RS10475 PF17871 AAA lid domain DNI88_RS10475 PF00004 ATPase family associated with various cellular activities (AAA) DNI88_RS10475 PF02861 Clp amino terminal domain, pathogenicity island component DNI88_RS10475 PF10431 C-terminal, D2-small domain, of ClpB protein DNI88_RS10480 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DNI88_RS10485 PF02151 UvrB/uvrC motif DNI88_RS10490 PF05848 CtsR N-terminal HTH domain DNI88_RS10490 PF17727 CtsR C-terminal dimerization domain DNI88_RS10495 PF01773 Na+ dependent nucleoside transporter N-terminus DNI88_RS10495 PF07662 Na+ dependent nucleoside transporter C-terminus DNI88_RS10505 PF01174 SNO glutamine amidotransferase family DNI88_RS10510 PF01680 SOR/SNZ family DNI88_RS10515 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS10515 PF00155 Aminotransferase class I and II DNI88_RS10605 PF01336 OB-fold nucleic acid binding domain DNI88_RS10605 PF00152 tRNA synthetases class II (D, K and N) DNI88_RS10610 PF01207 Dihydrouridine synthase (Dus) DNI88_RS10615 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DNI88_RS10620 PF02152 Dihydroneopterin aldolase DNI88_RS10625 PF00809 Pterin binding enzyme DNI88_RS10630 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS10635 PF01430 Hsp33 protein DNI88_RS10640 PF00004 ATPase family associated with various cellular activities (AAA) DNI88_RS10640 PF01434 Peptidase family M41 DNI88_RS10640 PF17862 AAA+ lid domain DNI88_RS10640 PF06480 FtsH Extracellular DNI88_RS10645 PF00156 Phosphoribosyl transferase domain DNI88_RS10650 PF11734 TilS substrate C-terminal domain DNI88_RS10650 PF01171 PP-loop family DNI88_RS10655 PF00575 S1 RNA binding domain DNI88_RS10665 PF01479 S4 domain DNI88_RS10670 PF03819 MazG nucleotide pyrophosphohydrolase domain DNI88_RS10670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DNI88_RS10675 PF01943 Polysaccharide biosynthesis protein DNI88_RS10675 PF14667 Polysaccharide biosynthesis C-terminal domain DNI88_RS10680 PF00270 DEAD/DEAH box helicase DNI88_RS10680 PF00271 Helicase conserved C-terminal domain DNI88_RS10680 PF03461 TRCF domain DNI88_RS10680 PF17757 UvrB interaction domain DNI88_RS10680 PF02559 CarD-like/TRCF domain DNI88_RS10685 PF01195 Peptidyl-tRNA hydrolase DNI88_RS10690 PF01386 Ribosomal L25p family DNI88_RS10690 PF14693 Ribosomal protein TL5, C-terminal domain DNI88_RS10695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DNI88_RS10695 PF14572 Phosphoribosyl synthetase-associated domain DNI88_RS10700 PF00483 Nucleotidyl transferase DNI88_RS10700 PF00132 Bacterial transferase hexapeptide (six repeats) DNI88_RS10705 PF04026 SpoVG DNI88_RS10710 PF01042 Endoribonuclease L-PSP DNI88_RS10715 PF00156 Phosphoribosyl transferase domain DNI88_RS10715 PF09182 Bacterial purine repressor, N-terminal DNI88_RS10720 PF00288 GHMP kinases N terminal domain DNI88_RS10720 PF08544 GHMP kinases C terminal DNI88_RS10725 PF06257 Biofilm formation stimulator VEG DNI88_RS10730 PF00398 Ribosomal RNA adenine dimethylase DNI88_RS10735 PF01751 Toprim domain DNI88_RS10735 PF13331 Domain of unknown function (DUF4093) DNI88_RS10740 PF01026 TatD related DNase DNI88_RS10745 PF09334 tRNA synthetases class I (M) DNI88_RS10745 PF01588 Putative tRNA binding domain DNI88_RS10745 PF08264 Anticodon-binding domain of tRNA DNI88_RS10750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DNI88_RS10755 PF01541 GIY-YIG catalytic domain DNI88_RS10760 PF05175 Methyltransferase small domain DNI88_RS10765 PF06156 Initiation control protein YabA DNI88_RS10770 PF04468 PSP1 C-terminal conserved region DNI88_RS10775 PF09115 DNA polymerase III, delta subunit, C terminal DNI88_RS10780 PF06153 Cyclic-di-AMP receptor DNI88_RS10785 PF02223 Thymidylate kinase DNI88_RS10790 PF01276 Orn/Lys/Arg decarboxylase, major domain DNI88_RS10790 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DNI88_RS10815 PF13662 Toprim domain DNI88_RS10815 PF02132 RecR protein DNI88_RS10820 PF02575 YbaB/EbfC DNA-binding family DNI88_RS10825 PF12169 DNA polymerase III subunits gamma and tau domain III DNI88_RS10830 PF00583 Acetyltransferase (GNAT) family DNI88_RS10840 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS10840 PF07702 UTRA domain DNI88_RS10845 PF00128 Alpha amylase, catalytic domain DNI88_RS10845 PF16657 Maltogenic Amylase, C-terminal domain DNI88_RS10850 PF02378 Phosphotransferase system, EIIC DNI88_RS10850 PF00367 phosphotransferase system, EIIB DNI88_RS10860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DNI88_RS10860 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS10865 PF01645 Conserved region in glutamate synthase DNI88_RS10865 PF04898 Glutamate synthase central domain DNI88_RS10865 PF00310 Glutamine amidotransferases class-II DNI88_RS10865 PF01493 GXGXG motif DNI88_RS10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DNI88_RS10870 PF03466 LysR substrate binding domain DNI88_RS10885 PF00005 ABC transporter DNI88_RS10885 PF17755 UvrA DNA-binding domain DNI88_RS10885 PF17760 UvrA interaction domain DNI88_RS10900 PF13545 Crp-like helix-turn-helix domain DNI88_RS10900 PF00027 Cyclic nucleotide-binding domain DNI88_RS10905 PF11420 Bacteriocin subtilosin A DNI88_RS10910 PF13186 Iron-sulfur cluster-binding domain DNI88_RS10910 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DNI88_RS10910 PF04055 Radical SAM superfamily DNI88_RS10915 PF00005 ABC transporter DNI88_RS10950 PF05257 CHAP domain DNI88_RS10950 PF01476 LysM domain DNI88_RS10960 PF01053 Cys/Met metabolism PLP-dependent enzyme DNI88_RS10965 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS10970 PF00135 Carboxylesterase family DNI88_RS10975 PF00209 Sodium:neurotransmitter symporter family DNI88_RS10985 PF00072 Response regulator receiver domain DNI88_RS10985 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS10990 PF02702 Osmosensitive K+ channel His kinase sensor domain DNI88_RS10990 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS10990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS10990 PF13493 Domain of unknown function (DUF4118) DNI88_RS11000 PF03814 Potassium-transporting ATPase A subunit DNI88_RS11010 PF02669 K+-transporting ATPase, c chain DNI88_RS11020 PF03618 Kinase/pyrophosphorylase DNI88_RS11025 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DNI88_RS11025 PF02896 PEP-utilising enzyme, TIM barrel domain DNI88_RS11025 PF00391 PEP-utilising enzyme, mobile domain DNI88_RS11035 PF04022 Staphylocoagulase repeat DNI88_RS11035 PF08764 Staphylococcus aureus coagulase DNI88_RS11040 PF09199 Staphylococcal superantigen-like OB-fold domain DNI88_RS11040 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DNI88_RS11045 PF02261 Aspartate decarboxylase DNI88_RS11050 PF02569 Pantoate-beta-alanine ligase DNI88_RS11055 PF02548 Ketopantoate hydroxymethyltransferase DNI88_RS11060 PF02558 Ketopantoate reductase PanE/ApbA DNI88_RS11060 PF08546 Ketopantoate reductase PanE/ApbA C terminal DNI88_RS11065 PF11975 Family 4 glycosyl hydrolase C-terminal domain DNI88_RS11065 PF02056 Family 4 glycosyl hydrolase DNI88_RS11070 PF00367 phosphotransferase system, EIIB DNI88_RS11070 PF02378 Phosphotransferase system, EIIC DNI88_RS11085 PF00753 Metallo-beta-lactamase superfamily DNI88_RS11090 PF13686 DsrE/DsrF/DrsH-like family DNI88_RS11095 PF02583 Metal-sensitive transcriptional repressor DNI88_RS11100 PF01925 Sulfite exporter TauE/SafE DNI88_RS11105 PF07690 Major Facilitator Superfamily DNI88_RS11115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DNI88_RS11120 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DNI88_RS11125 PF05569 BlaR1 peptidase M56 DNI88_RS11125 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS11130 PF03965 Penicillinase repressor DNI88_RS11135 PF02796 Helix-turn-helix domain of resolvase DNI88_RS11135 PF00239 Resolvase, N terminal domain DNI88_RS11140 PF00665 Integrase core domain DNI88_RS11140 PF09299 Mu transposase, C-terminal DNI88_RS11145 PF13401 AAA domain DNI88_RS11150 PF07690 Major Facilitator Superfamily DNI88_RS11155 PF00005 ABC transporter DNI88_RS11160 PF00005 ABC transporter DNI88_RS11165 PF12911 N-terminal TM domain of oligopeptide transport permease C DNI88_RS11165 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS11175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DNI88_RS11180 PF10100 Staphylopine dehydrogenase DNI88_RS11200 PF07722 Peptidase C26 DNI88_RS11205 PF13520 Amino acid permease DNI88_RS11210 PF04650 YSIRK type signal peptide DNI88_RS11220 PF05901 Excalibur calcium-binding domain DNI88_RS11220 PF00565 Staphylococcal nuclease homologue DNI88_RS11255 PF14659 Phage integrase, N-terminal SAM-like domain DNI88_RS11255 PF00589 Phage integrase family DNI88_RS11260 PF02556 Preprotein translocase subunit SecB DNI88_RS11355 PF00958 GMP synthase C terminal domain DNI88_RS11355 PF00117 Glutamine amidotransferase class-I DNI88_RS11360 PF00571 CBS domain DNI88_RS11360 PF00478 IMP dehydrogenase / GMP reductase domain DNI88_RS11365 PF00860 Permease family DNI88_RS11370 PF00156 Phosphoribosyl transferase domain DNI88_RS11375 PF11181 Heat induced stress protein YflT DNI88_RS11390 PF01266 FAD dependent oxidoreductase DNI88_RS11395 PF00375 Sodium:dicarboxylate symporter family DNI88_RS11400 PF00005 ABC transporter DNI88_RS11420 PF00881 Nitroreductase family DNI88_RS11425 PF00578 AhpC/TSA family DNI88_RS11430 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS11430 PF13192 Thioredoxin domain DNI88_RS11440 PF04055 Radical SAM superfamily DNI88_RS11440 PF06968 Biotin and Thiamin Synthesis associated domain DNI88_RS11450 PF00005 ABC transporter DNI88_RS11450 PF09383 NIL domain DNI88_RS11455 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS11460 PF03180 NLPA lipoprotein DNI88_RS11465 PF00962 Adenosine/AMP deaminase DNI88_RS11470 PF18011 C-terminal domain found in long catalases DNI88_RS11470 PF00199 Catalase DNI88_RS11470 PF06628 Catalase-related immune-responsive DNI88_RS11475 PF03459 TOBE domain DNI88_RS11475 PF17912 MalK OB fold domain DNI88_RS11475 PF00005 ABC transporter DNI88_RS11480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS11480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS11485 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS11490 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS11500 PF07883 Cupin domain DNI88_RS11500 PF12833 Helix-turn-helix domain DNI88_RS11505 PF01084 Ribosomal protein S18 DNI88_RS11510 PF00436 Single-strand binding protein family DNI88_RS11515 PF01250 Ribosomal protein S6 DNI88_RS11520 PF11621 C3 binding domain 4 of IgG-bind protein SBI DNI88_RS11520 PF02216 B domain DNI88_RS11525 PF12679 ABC-2 family transporter protein DNI88_RS11530 PF00005 ABC transporter DNI88_RS11545 PF06071 Protein of unknown function (DUF933) DNI88_RS11545 PF01926 50S ribosome-binding GTPase DNI88_RS11550 PF06107 Bacterial protein of unknown function (DUF951) DNI88_RS11555 PF00924 Mechanosensitive ion channel DNI88_RS11560 PF02195 ParB-like nuclease domain DNI88_RS11560 PF17762 HTH domain found in ParB protein DNI88_RS11565 PF01053 Cys/Met metabolism PLP-dependent enzyme DNI88_RS11570 PF01053 Cys/Met metabolism PLP-dependent enzyme DNI88_RS11575 PF02219 Methylenetetrahydrofolate reductase DNI88_RS11575 PF02574 Homocysteine S-methyltransferase DNI88_RS11580 PF01717 Cobalamin-independent synthase, Catalytic domain DNI88_RS11580 PF08267 Cobalamin-independent synthase, N-terminal domain DNI88_RS11585 PF01774 UreD urease accessory protein DNI88_RS11590 PF02492 CobW/HypB/UreG, nucleotide-binding domain DNI88_RS11595 PF01730 UreF DNI88_RS11600 PF02814 UreE urease accessory protein, N-terminal domain DNI88_RS11600 PF05194 UreE urease accessory protein, C-terminal domain DNI88_RS11615 PF14542 GCN5-related N-acetyl-transferase DNI88_RS11620 PF01047 MarR family DNI88_RS11625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DNI88_RS11630 PF01613 Flavin reductase like domain DNI88_RS11635 PF01738 Dienelactone hydrolase family DNI88_RS11645 PF02195 ParB-like nuclease domain DNI88_RS11645 PF17762 HTH domain found in ParB protein DNI88_RS11650 PF02527 rRNA small subunit methyltransferase G DNI88_RS11655 PF13932 GidA associated domain DNI88_RS11655 PF01134 Glucose inhibited division protein A DNI88_RS11660 PF01926 50S ribosome-binding GTPase DNI88_RS11660 PF10396 GTP-binding protein TrmE N-terminus DNI88_RS11660 PF12631 MnmE helical domain DNI88_RS11665 PF00825 Ribonuclease P DNI88_RS11670 PF00468 Ribosomal protein L34 DNI88_RS11675 PF00308 Bacterial dnaA protein DNI88_RS11675 PF11638 DnaA N-terminal domain DNI88_RS11675 PF08299 Bacterial dnaA protein helix-turn-helix DNI88_RS11680 PF02768 DNA polymerase III beta subunit, C-terminal domain DNI88_RS11680 PF02767 DNA polymerase III beta subunit, central domain DNI88_RS11680 PF00712 DNA polymerase III beta subunit, N-terminal domain DNI88_RS11685 PF06965 Na+/H+ antiporter 1 DNI88_RS11685 PF13462 Thioredoxin DNI88_RS11695 PF02463 RecF/RecN/SMC N terminal domain DNI88_RS11700 PF01751 Toprim domain DNI88_RS11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS11700 PF00986 DNA gyrase B subunit, carboxyl terminus DNI88_RS11700 PF00204 DNA gyrase B DNI88_RS11705 PF03989 DNA gyrase C-terminal domain, beta-propeller DNI88_RS11705 PF00521 DNA gyrase/topoisomerase IV, subunit A DNI88_RS11710 PF01256 Carbohydrate kinase DNI88_RS11715 PF00221 Aromatic amino acid lyase DNI88_RS11720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DNI88_RS11720 PF02403 Seryl-tRNA synthetase N-terminal domain DNI88_RS11725 PF03591 AzlC protein DNI88_RS11735 PF00561 alpha/beta hydrolase fold DNI88_RS11740 PF09991 Predicted membrane protein (DUF2232) DNI88_RS11745 PF01368 DHH family DNI88_RS11745 PF02272 DHHA1 domain DNI88_RS11750 PF01281 Ribosomal protein L9, N-terminal domain DNI88_RS11750 PF03948 Ribosomal protein L9, C-terminal domain DNI88_RS11755 PF03796 DnaB-like helicase C terminal domain DNI88_RS11755 PF00772 DnaB-like helicase N terminal domain DNI88_RS11760 PF00709 Adenylosuccinate synthetase DNI88_RS11765 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DNI88_RS11765 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DNI88_RS11785 PF00072 Response regulator receiver domain DNI88_RS11785 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS11790 PF14827 Double sensory domain of two-component sensor kinase DNI88_RS11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS11790 PF00672 HAMP domain DNI88_RS11790 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS11790 PF13426 PAS domain DNI88_RS11795 PF07435 YycH protein DNI88_RS11805 PF00753 Metallo-beta-lactamase superfamily DNI88_RS11810 PF02590 Predicted SPOUT methyltransferase DNI88_RS11830 PF01367 5'-3' exonuclease, C-terminal SAM fold DNI88_RS11830 PF00476 DNA polymerase family A DNI88_RS11830 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DNI88_RS11845 PF02796 Helix-turn-helix domain of resolvase DNI88_RS11845 PF00239 Resolvase, N terminal domain DNI88_RS11865 PF13610 DDE domain DNI88_RS11875 PF03009 Glycerophosphoryl diester phosphodiesterase family DNI88_RS11880 PF01575 MaoC like domain DNI88_RS11885 PF05223 NTF2-like N-terminal transpeptidase domain DNI88_RS11885 PF03717 Penicillin-binding Protein dimerisation domain DNI88_RS11885 PF00905 Penicillin binding protein transpeptidase domain DNI88_RS11930 PF00239 Resolvase, N terminal domain DNI88_RS11930 PF07508 Recombinase DNI88_RS11930 PF13408 Recombinase zinc beta ribbon domain DNI88_RS11970 PF09827 CRISPR associated protein Cas2 DNI88_RS11975 PF18211 Csm1 subunit domain B DNI88_RS11980 PF03750 Csm2 Type III-A DNI88_RS11985 PF03787 RAMP superfamily DNI88_RS11990 PF17953 CRISPR Csm4 C-terminal domain DNI88_RS11995 PF03787 RAMP superfamily DNI88_RS12000 PF09659 CRISPR-associated protein (Cas_Csm6) DNI88_RS12005 PF10040 CRISPR-associated endoribonuclease Cas6 DNI88_RS12030 PF04235 Protein of unknown function (DUF418) DNI88_RS12040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DNI88_RS12040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DNI88_RS12045 PF00291 Pyridoxal-phosphate dependent enzyme DNI88_RS12050 PF13520 Amino acid permease DNI88_RS12065 PF04556 DpnII restriction endonuclease DNI88_RS12075 PF02086 D12 class N6 adenine-specific DNA methyltransferase DNI88_RS12080 PF01555 DNA methylase DNI88_RS12085 PF07702 UTRA domain DNI88_RS12085 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS12090 PF00232 Glycosyl hydrolase family 1 DNI88_RS12105 PF03441 FAD binding domain of DNA photolyase DNI88_RS12105 PF00875 DNA photolyase DNI88_RS12110 PF13411 MerR HTH family regulatory protein DNI88_RS12120 PF13460 NAD(P)H-binding DNI88_RS12125 PF16884 N-terminal domain of oxidoreductase DNI88_RS12125 PF00107 Zinc-binding dehydrogenase DNI88_RS12140 PF13784 Fic/DOC family N-terminal DNI88_RS12140 PF02661 Fic/DOC family DNI88_RS12145 PF01546 Peptidase family M20/M25/M40 DNI88_RS12145 PF07687 Peptidase dimerisation domain DNI88_RS12150 PF01641 SelR domain DNI88_RS12150 PF01625 Peptide methionine sulfoxide reductase DNI88_RS12155 PF02146 Sir2 family DNI88_RS12160 PF00027 Cyclic nucleotide-binding domain DNI88_RS12160 PF13545 Crp-like helix-turn-helix domain DNI88_RS12165 PF00696 Amino acid kinase family DNI88_RS12170 PF13520 Amino acid permease DNI88_RS12175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DNI88_RS12175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DNI88_RS12185 PF01316 Arginine repressor, DNA binding domain DNI88_RS12185 PF02863 Arginine repressor, C-terminal domain DNI88_RS12195 PF00196 Bacterial regulatory proteins, luxR family DNI88_RS12195 PF00072 Response regulator receiver domain DNI88_RS12200 PF13185 GAF domain DNI88_RS12200 PF07730 Histidine kinase DNI88_RS12210 PF00005 ABC transporter DNI88_RS12220 PF13457 GW (Gly-Tryp) dipeptide domain DNI88_RS12220 PF01510 N-acetylmuramoyl-L-alanine amidase DNI88_RS12230 PF03358 NADPH-dependent FMN reductase DNI88_RS12245 PF03466 LysR substrate binding domain DNI88_RS12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DNI88_RS12250 PF03606 C4-dicarboxylate anaerobic carrier DNI88_RS12255 PF01546 Peptidase family M20/M25/M40 DNI88_RS12260 PF01867 CRISPR associated protein Cas1 DNI88_RS12265 PF09827 CRISPR associated protein Cas2 DNI88_RS12270 PF18211 Csm1 subunit domain B DNI88_RS12275 PF03750 Csm2 Type III-A DNI88_RS12280 PF03787 RAMP superfamily DNI88_RS12285 PF17953 CRISPR Csm4 C-terminal domain DNI88_RS12290 PF03787 RAMP superfamily DNI88_RS12295 PF09659 CRISPR-associated protein (Cas_Csm6) DNI88_RS12300 PF10040 CRISPR-associated endoribonuclease Cas6 DNI88_RS12305 PF02388 FemAB family DNI88_RS12310 PF00356 Bacterial regulatory proteins, lacI family DNI88_RS12315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS12315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS12320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS12320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS12330 PF00128 Alpha amylase, catalytic domain DNI88_RS12330 PF16657 Maltogenic Amylase, C-terminal domain DNI88_RS12340 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS12345 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS12355 PF03459 TOBE domain DNI88_RS12355 PF17912 MalK OB fold domain DNI88_RS12355 PF00005 ABC transporter DNI88_RS12360 PF00999 Sodium/hydrogen exchanger family DNI88_RS12365 PF02080 TrkA-C domain DNI88_RS12375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DNI88_RS12385 PF13276 HTH-like domain DNI88_RS12385 PF00665 Integrase core domain DNI88_RS12385 PF13333 Integrase core domain DNI88_RS12410 PF00005 ABC transporter DNI88_RS12420 PF00754 F5/8 type C domain DNI88_RS12420 PF18080 Galactose mutarotase-like fold domain DNI88_RS12420 PF17974 Galactose-binding domain-like DNI88_RS12420 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal DNI88_RS12420 PF12905 Endo-alpha-N-acetylgalactosaminidase DNI88_RS12420 PF04650 YSIRK type signal peptide DNI88_RS12420 PF17451 Glycosyl hydrolase 101 beta sandwich domain DNI88_RS12425 PF07702 UTRA domain DNI88_RS12425 PF00392 Bacterial regulatory proteins, gntR family DNI88_RS12430 PF01380 SIS domain DNI88_RS12435 PF00294 pfkB family carbohydrate kinase DNI88_RS12440 PF01791 DeoC/LacD family aldolase DNI88_RS12445 PF01301 Glycosyl hydrolases family 35 DNI88_RS12450 PF03610 PTS system fructose IIA component DNI88_RS12450 PF03830 PTS system sorbose subfamily IIB component DNI88_RS12455 PF03609 PTS system sorbose-specific iic component DNI88_RS12460 PF03613 PTS system mannose/fructose/sorbose family IID component DNI88_RS12470 PF01979 Amidohydrolase family DNI88_RS12475 PF04264 YceI-like domain DNI88_RS12480 PF02378 Phosphotransferase system, EIIC DNI88_RS12480 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DNI88_RS12480 PF00367 phosphotransferase system, EIIB DNI88_RS12485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DNI88_RS12485 PF00056 lactate/malate dehydrogenase, NAD binding domain DNI88_RS12490 PF07670 Nucleoside recognition DNI88_RS12495 PF01614 Bacterial transcriptional regulator DNI88_RS12495 PF09339 IclR helix-turn-helix domain DNI88_RS12510 PF00107 Zinc-binding dehydrogenase DNI88_RS12510 PF08240 Alcohol dehydrogenase GroES-like domain DNI88_RS12525 PF02652 L-lactate permease DNI88_RS12535 PF00202 Aminotransferase class-III DNI88_RS12540 PF00155 Aminotransferase class I and II DNI88_RS12545 PF03744 6-carboxyhexanoate--CoA ligase DNI88_RS12555 PF01757 Acyltransferase family DNI88_RS12560 PF01522 Polysaccharide deacetylase DNI88_RS12570 PF00535 Glycosyl transferase family 2 DNI88_RS12585 PF02525 Flavodoxin-like fold DNI88_RS12600 PF00282 Pyridoxal-dependent decarboxylase conserved domain DNI88_RS12610 PF00011 Hsp20/alpha crystallin family DNI88_RS12615 PF12867 DinB superfamily DNI88_RS12620 PF06628 Catalase-related immune-responsive DNI88_RS12620 PF00199 Catalase DNI88_RS12630 PF00210 Ferritin-like domain DNI88_RS12635 PF00474 Sodium:solute symporter family DNI88_RS12640 PF00155 Aminotransferase class I and II DNI88_RS12665 PF00005 ABC transporter DNI88_RS12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase DNI88_RS12675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DNI88_RS12690 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DNI88_RS12690 PF17961 Bacterial Ig domain DNI88_RS12690 PF17210 SdrD B-like domain DNI88_RS12690 PF00746 LPXTG cell wall anchor motif DNI88_RS12690 PF04650 YSIRK type signal peptide DNI88_RS12695 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DNI88_RS12700 PF04650 YSIRK type signal peptide DNI88_RS12720 PF06039 Malate:quinone oxidoreductase (Mqo) DNI88_RS12780 PF00746 LPXTG cell wall anchor motif DNI88_RS12785 PF00344 SecY translocase DNI88_RS12790 PF16993 Accessory Sec system protein Asp1 DNI88_RS12795 PF16929 Accessory Sec system GspB-transporter DNI88_RS12800 PF15432 Accessory Sec secretory system ASP3 DNI88_RS12805 PF07517 SecA DEAD-like domain DNI88_RS12805 PF01043 SecA preprotein cross-linking domain DNI88_RS12805 PF07516 SecA Wing and Scaffold domain DNI88_RS12810 PF00534 Glycosyl transferases group 1 DNI88_RS12820 PF00108 Thiolase, N-terminal domain DNI88_RS12820 PF02803 Thiolase, C-terminal domain DNI88_RS12825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DNI88_RS12825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DNI88_RS12830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DNI88_RS12830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DNI88_RS12830 PF02770 Acyl-CoA dehydrogenase, middle domain DNI88_RS12835 PF00501 AMP-binding enzyme DNI88_RS12835 PF13193 AMP-binding enzyme C-terminal domain DNI88_RS12840 PF01144 Coenzyme A transferase DNI88_RS12845 PF07690 Major Facilitator Superfamily DNI88_RS12855 PF00528 Binding-protein-dependent transport system inner membrane component DNI88_RS12885 PF00356 Bacterial regulatory proteins, lacI family DNI88_RS12890 PF00294 pfkB family carbohydrate kinase DNI88_RS12900 PF07501 G5 domain DNI88_RS12900 PF04650 YSIRK type signal peptide DNI88_RS12900 PF00746 LPXTG cell wall anchor motif DNI88_RS12900 PF17041 E domain DNI88_RS12900 PF17041 E domain DNI88_RS12900 PF04650 YSIRK type signal peptide DNI88_RS12900 PF07501 G5 domain DNI88_RS12900 PF00746 LPXTG cell wall anchor motif DNI88_RS12935 PF02875 Mur ligase family, glutamate ligase domain DNI88_RS12935 PF01225 Mur ligase family, catalytic domain DNI88_RS12935 PF08245 Mur ligase middle domain DNI88_RS12955 PF00072 Response regulator receiver domain DNI88_RS12955 PF00486 Transcriptional regulatory protein, C terminal DNI88_RS12960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS12960 PF00512 His Kinase A (phospho-acceptor) domain DNI88_RS12970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DNI88_RS12980 PF03611 PTS system sugar-specific permease component DNI88_RS12990 PF03477 ATP cone domain DNI88_RS12990 PF13597 Anaerobic ribonucleoside-triphosphate reductase DNI88_RS13000 PF01053 Cys/Met metabolism PLP-dependent enzyme DNI88_RS13005 PF00296 Luciferase-like monooxygenase DNI88_RS13010 PF00474 Sodium:solute symporter family DNI88_RS13015 PF14552 Tautomerase enzyme DNI88_RS13025 PF01297 Zinc-uptake complex component A periplasmic DNI88_RS13025 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DNI88_RS13030 PF00274 Fructose-bisphosphate aldolase class-I DNI88_RS13035 PF00455 DeoR C terminal sensor domain DNI88_RS13035 PF08220 DeoR-like helix-turn-helix domain DNI88_RS13040 PF00171 Aldehyde dehydrogenase family DNI88_RS13045 PF04962 KduI/IolB family DNI88_RS13050 PF00294 pfkB family carbohydrate kinase DNI88_RS13055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DNI88_RS13055 PF00205 Thiamine pyrophosphate enzyme, central domain DNI88_RS13055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DNI88_RS13060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS13060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS13065 PF01261 Xylose isomerase-like TIM barrel DNI88_RS13070 PF00474 Sodium:solute symporter family DNI88_RS13075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DNI88_RS13075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DNI88_RS13080 PF01116 Fructose-bisphosphate aldolase class-II DNI88_RS13090 PF02558 Ketopantoate reductase PanE/ApbA DNI88_RS13090 PF08546 Ketopantoate reductase PanE/ApbA C terminal DNI88_RS13095 PF07690 Major Facilitator Superfamily DNI88_RS13100 PF00072 Response regulator receiver domain DNI88_RS13100 PF12833 Helix-turn-helix domain DNI88_RS13105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNI88_RS13105 PF06580 Histidine kinase