A9I66_RS00005	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
A9I66_RS00010	SM00480	DNA polymerase III beta subunit
A9I66_RS00030	SM00387	Histidine kinase-like ATPases
A9I66_RS00030	SM00433	TopoisomeraseII
A9I66_RS00035	SM00434	DNA Topoisomerase IV
A9I66_RS00085	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00090	SM00788	Adenylosuccinate synthetase
A9I66_RS00115	SM00448	cheY-homologous receiver domain
A9I66_RS00115	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS00120	SM00091	PAS domain
A9I66_RS00120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9I66_RS00120	SM00387	Histidine kinase-like ATPases
A9I66_RS00120	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS00135	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS00170	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A9I66_RS00225	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00255	SM00857	Resolvase, N terminal domain
A9I66_RS00295	SM00487	DEAD-like helicases superfamily
A9I66_RS00315	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00330	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00330	SM01086	C-terminal, D2-small domain, of ClpB protein
A9I66_RS00365	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9I66_RS00365	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A9I66_RS00385	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS00390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS00390	SM00866	A9I66_RS00390
A9I66_RS00410	SM00422	helix_turn_helix, mercury resistance
A9I66_RS00425	SM00829	Enoylreductase
A9I66_RS00490	SM00421	helix_turn_helix, Lux Regulon
A9I66_RS00490	SM00448	cheY-homologous receiver domain
A9I66_RS00495	SM00387	Histidine kinase-like ATPases
A9I66_RS00505	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00515	SM00644	A9I66_RS00515
A9I66_RS00560	SM00354	helix_turn _helix lactose operon repressor
A9I66_RS00580	SM00642	Alpha-amylase domain
A9I66_RS00605	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00665	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS00680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS00680	SM00866	A9I66_RS00680
A9I66_RS00695	SM01133	A9I66_RS00695
A9I66_RS00730	SM00867	YceI-like domain 
A9I66_RS00750	SM00346	helix_turn_helix isocitrate lyase regulation
A9I66_RS00755	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS00765	SM00829	Enoylreductase
A9I66_RS00775	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS00850	SM00344	helix_turn_helix ASNC type
A9I66_RS00920	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01025	SM00957	SecA DEAD-like domain
A9I66_RS01025	SM00958	SecA preprotein cross-linking domain
A9I66_RS01060	SM00882	Coenzyme A transferase
A9I66_RS01085	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01105	SM00354	helix_turn _helix lactose operon repressor
A9I66_RS01135	SM00387	Histidine kinase-like ATPases
A9I66_RS01135	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS01220	SM00342	helix_turn_helix, arabinose operon control protein
A9I66_RS01220	SM00448	cheY-homologous receiver domain
A9I66_RS01265	SM01038	Beta galactosidase small chain
A9I66_RS01280	SM00155	Phospholipase D. Active site motifs.
A9I66_RS01300	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS01315	SM00098	Alkaline phosphatase homologues
A9I66_RS01325	SM00487	DEAD-like helicases superfamily
A9I66_RS01325	SM00490	helicase superfamily c-terminal domain
A9I66_RS01405	SM01133	A9I66_RS01405
A9I66_RS01415	SM00387	Histidine kinase-like ATPases
A9I66_RS01420	SM00448	cheY-homologous receiver domain
A9I66_RS01420	SM00850	LytTr DNA-binding domain
A9I66_RS01440	SM01120	A9I66_RS01440
A9I66_RS01475	SM00422	helix_turn_helix, mercury resistance
A9I66_RS01490	SM00047	Lysozyme subfamily 2
A9I66_RS01525	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01530	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01610	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01715	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS01735	SM00855	Phosphoglycerate mutase family
A9I66_RS01765	SM00986	Uracil DNA glycosylase superfamily
A9I66_RS01765	SM00987	UreE urease accessory protein, C-terminal domain 
A9I66_RS01855	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01860	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01865	SM00422	helix_turn_helix, mercury resistance
A9I66_RS01920	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A9I66_RS01950	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01955	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01975	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS01980	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS02110	SM00836	DALR anticodon binding domain
A9I66_RS02110	SM01016	Arginyl tRNA synthetase N terminal dom
A9I66_RS02120	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A9I66_RS02145	SM00387	Histidine kinase-like ATPases
A9I66_RS02150	SM00421	helix_turn_helix, Lux Regulon
A9I66_RS02150	SM00448	cheY-homologous receiver domain
A9I66_RS02200	SM00342	helix_turn_helix, arabinose operon control protein
A9I66_RS02215	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS02250	SM00829	Enoylreductase
A9I66_RS02280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9I66_RS02280	SM00387	Histidine kinase-like ATPases
A9I66_RS02280	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS02285	SM00448	cheY-homologous receiver domain
A9I66_RS02285	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS02295	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS02310	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS02360	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A9I66_RS02370	SM00342	helix_turn_helix, arabinose operon control protein
A9I66_RS02410	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS02545	SM00420	helix_turn_helix, Deoxyribose operon repressor
A9I66_RS02575	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A9I66_RS02575	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A9I66_RS02590	SM00047	Lysozyme subfamily 2
A9I66_RS02680	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS02700	SM01040	BRO family, N-terminal domain
A9I66_RS02890	SM00635	Bacterial Ig-like domain 2
A9I66_RS02965	SM00047	Lysozyme subfamily 2
A9I66_RS03000	SM01130	A9I66_RS03000
A9I66_RS03005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS03005	SM00895	A9I66_RS03005
A9I66_RS03030	SM00354	helix_turn _helix lactose operon repressor
A9I66_RS03060	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03070	SM00852	Probable molybdopterin binding domain
A9I66_RS03080	SM00852	Probable molybdopterin binding domain
A9I66_RS03105	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS03115	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS03160	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A9I66_RS03160	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A9I66_RS03160	SM00493	A9I66_RS03160
A9I66_RS03180	SM01403	A9I66_RS03180
A9I66_RS03200	SM01382	A9I66_RS03200
A9I66_RS03200	SM01383	A9I66_RS03200
A9I66_RS03215	SM00322	K homology RNA-binding domain
A9I66_RS03235	SM01374	A9I66_RS03235
A9I66_RS03240	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9I66_RS03295	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS03315	SM00662	RNA polymerases D
A9I66_RS03325	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03330	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03380	SM00953	A9I66_RS03380
A9I66_RS03395	SM00487	DEAD-like helicases superfamily
A9I66_RS03400	SM00420	helix_turn_helix, Deoxyribose operon repressor
A9I66_RS03400	SM01134	A9I66_RS03400
A9I66_RS03415	SM01133	A9I66_RS03415
A9I66_RS03435	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03445	SM00829	Enoylreductase
A9I66_RS03665	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS03680	SM00895	A9I66_RS03680
A9I66_RS03720	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A9I66_RS03810	SM00357	Cold shock protein domain
A9I66_RS03810	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03810	SM00959	Rho termination factor, N-terminal domain
A9I66_RS03825	SM00937	A9I66_RS03825
A9I66_RS03840	SM00226	Low molecular weight phosphatase family
A9I66_RS03900	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS03965	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9I66_RS03970	SM00155	Phospholipase D. Active site motifs.
A9I66_RS04020	SM00487	DEAD-like helicases superfamily
A9I66_RS04020	SM00490	helicase superfamily c-terminal domain
A9I66_RS04045	SM01005	Alanine racemase, C-terminal domain
A9I66_RS04060	SM00331	Sigma factor PP2C-like phosphatases
A9I66_RS04060	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A9I66_RS04080	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS04080	SM00732	Likely ribonuclease with RNase H fold.
A9I66_RS04085	SM00731	SprT homologues.
A9I66_RS04135	SM01329	A9I66_RS04135
A9I66_RS04140	SM00917	LeuA allosteric (dimerisation) domain
A9I66_RS04185	SM00534	ATPase domain of DNA mismatch repair MUTS family
A9I66_RS04190	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS04195	SM00881	CoA binding domain
A9I66_RS04205	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS04220	SM00354	helix_turn _helix lactose operon repressor
A9I66_RS04225	SM00640	Glycosyl hydrolases family 32
A9I66_RS04235	SM00448	cheY-homologous receiver domain
A9I66_RS04235	SM00850	LytTr DNA-binding domain
A9I66_RS04245	SM00794	Staphylococcal AgrD protein
A9I66_RS04250	SM00793	Accessory gene regulator B
A9I66_RS04270	SM00883	Chaperonin 10 Kd subunit
A9I66_RS04305	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS04315	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS04315	SM00895	A9I66_RS04315
A9I66_RS04370	SM01131	A9I66_RS04370
A9I66_RS04415	SM00998	Adenylosuccinate lyase C-terminus
A9I66_RS04435	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9I66_RS04435	SM00292	breast cancer carboxy-terminal domain
A9I66_RS04435	SM00532	Ligase N family
A9I66_RS04460	SM00845	GatB domain
A9I66_RS04465	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A9I66_RS04490	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS04500	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS04525	SM00479	A9I66_RS04525
A9I66_RS04565	SM00387	Histidine kinase-like ATPases
A9I66_RS04575	SM00947	Carbonic anhydrase
A9I66_RS04590	SM00226	Low molecular weight phosphatase family
A9I66_RS04655	SM00478	endonuclease III
A9I66_RS04665	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS04925	SM00062	Bacterial periplasmic substrate-binding proteins
A9I66_RS04925	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A9I66_RS04930	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS04975	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9I66_RS04975	SM00387	Histidine kinase-like ATPases
A9I66_RS04980	SM00421	helix_turn_helix, Lux Regulon
A9I66_RS04980	SM00448	cheY-homologous receiver domain
A9I66_RS04995	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS05035	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS05050	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS05160	SM00855	Phosphoglycerate mutase family
A9I66_RS05185	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A9I66_RS05195	SM01007	Class II Aldolase and Adducin N-terminal domain
A9I66_RS05215	SM01234	A9I66_RS05215
A9I66_RS05290	SM00047	Lysozyme subfamily 2
A9I66_RS05350	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS05365	SM00450	Rhodanese Homology Domain
A9I66_RS05380	SM00363	S4 RNA-binding domain
A9I66_RS05410	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS05440	SM00843	A9I66_RS05440
A9I66_RS05460	SM00830	Chorismate mutase type II
A9I66_RS05465	SM00354	helix_turn _helix lactose operon repressor
A9I66_RS05500	SM00363	S4 RNA-binding domain
A9I66_RS05505	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9I66_RS05510	SM00563	Phosphate acyltransferases
A9I66_RS05585	SM00363	S4 RNA-binding domain
A9I66_RS05585	SM01390	A9I66_RS05585
A9I66_RS05605	SM00981	A9I66_RS05605
A9I66_RS05645	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9I66_RS05645	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A9I66_RS05660	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS05670	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9I66_RS05680	SM00481	DNA polymerase alpha chain like domain
A9I66_RS05685	SM00919	Malic enzyme, NAD binding domain
A9I66_RS05685	SM01274	A9I66_RS05685
A9I66_RS05715	SM01329	A9I66_RS05715
A9I66_RS05725	SM00091	PAS domain
A9I66_RS05725	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9I66_RS05725	SM00387	Histidine kinase-like ATPases
A9I66_RS05725	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS05730	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A9I66_RS05730	SM00474	3'-5' exonuclease
A9I66_RS05730	SM00475	5'-3' exonuclease
A9I66_RS05730	SM00482	DNA polymerase A domain
A9I66_RS05735	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A9I66_RS05735	SM01232	A9I66_RS05735
A9I66_RS05745	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A9I66_RS05760	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS05765	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9I66_RS05805	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS05805	SM00994	ClpX C4-type zinc finger
A9I66_RS05805	SM01086	C-terminal, D2-small domain, of ClpB protein
A9I66_RS05835	SM01004	Delta-aminolevulinic acid dehydratase
A9I66_RS05915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9I66_RS05920	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS05935	SM01323	A9I66_RS05935
A9I66_RS05965	SM00287	Bacterial SH3 domain homologues
A9I66_RS05965	SM00646	A9I66_RS05965
A9I66_RS05990	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS06025	SM00028	Tetratricopeptide repeats
A9I66_RS06030	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS06035	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9I66_RS06045	SM00732	Likely ribonuclease with RNase H fold.
A9I66_RS06085	SM00797	Allophanate hydrolase subunit 2
A9I66_RS06095	SM00878	Biotin carboxylase C-terminal domain
A9I66_RS06130	SM01103	A9I66_RS06130
A9I66_RS06140	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9I66_RS06155	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9I66_RS06185	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS06205	SM00271	DnaJ molecular chaperone homology domain
A9I66_RS06220	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS06285	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9I66_RS06295	SM00400	zinc finger
A9I66_RS06295	SM00493	A9I66_RS06295
A9I66_RS06320	SM00487	DEAD-like helicases superfamily
A9I66_RS06320	SM00490	helicase superfamily c-terminal domain
A9I66_RS06325	SM00518	AP endonuclease family 2
A9I66_RS06330	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS06375	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS06415	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS06465	SM00450	Rhodanese Homology Domain
A9I66_RS06490	SM00841	Elongation factor P, C-terminal
A9I66_RS06490	SM01185	A9I66_RS06490
A9I66_RS06500	SM00878	Biotin carboxylase C-terminal domain
A9I66_RS06530	SM00861	Transketolase, pyrimidine binding domain
A9I66_RS06565	SM00861	Transketolase, pyrimidine binding domain
A9I66_RS06590	SM01350	A9I66_RS06590
A9I66_RS06610	SM00342	helix_turn_helix, arabinose operon control protein
A9I66_RS06610	SM00871	Bacterial transcription activator, effector binding domain
A9I66_RS06630	SM00822	A9I66_RS06630
A9I66_RS06670	SM00363	S4 RNA-binding domain
A9I66_RS06675	SM00448	cheY-homologous receiver domain
A9I66_RS06675	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS06680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9I66_RS06680	SM00387	Histidine kinase-like ATPases
A9I66_RS06680	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS06700	SM00487	DEAD-like helicases superfamily
A9I66_RS06700	SM00490	helicase superfamily c-terminal domain
A9I66_RS06705	SM00257	Lysin motif
A9I66_RS06715	SM00870	A9I66_RS06715
A9I66_RS06725	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS06740	SM00411	bacterial (prokaryotic) histone like domain
A9I66_RS06760	SM00562	A9I66_RS06760
A9I66_RS06780	SM00028	Tetratricopeptide repeats
A9I66_RS06820	SM00479	A9I66_RS06820
A9I66_RS06820	SM00491	A9I66_RS06820
A9I66_RS06835	SM00478	endonuclease III
A9I66_RS06835	SM00525	A9I66_RS06835
A9I66_RS06875	SM00981	A9I66_RS06875
A9I66_RS06910	SM00567	E-Z type HEAT repeats
A9I66_RS06910	SM00932	Scaffold protein Nfu/NifU N terminal
A9I66_RS06955	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9I66_RS06955	SM00245	tail specific protease
A9I66_RS06970	SM00014	Acid phosphatase homologues
A9I66_RS06975	SM00448	cheY-homologous receiver domain
A9I66_RS06975	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS06980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9I66_RS06980	SM00387	Histidine kinase-like ATPases
A9I66_RS06980	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS07015	SM00327	von Willebrand factor (vWF) type A domain
A9I66_RS07050	SM00357	Cold shock protein domain
A9I66_RS07065	SM01005	Alanine racemase, C-terminal domain
A9I66_RS07085	SM01130	A9I66_RS07085
A9I66_RS07090	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A9I66_RS07095	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS07185	SM01061	CAT RNA binding domain
A9I66_RS07195	SM00434	DNA Topoisomerase IV
A9I66_RS07200	SM00387	Histidine kinase-like ATPases
A9I66_RS07200	SM00433	TopoisomeraseII
A9I66_RS07205	SM01207	A9I66_RS07205
A9I66_RS07280	SM01240	A9I66_RS07280
A9I66_RS07345	SM00318	Staphylococcal nuclease homologues
A9I66_RS07355	SM00318	Staphylococcal nuclease homologues
A9I66_RS07390	SM01230	A9I66_RS07390
A9I66_RS07395	SM00422	helix_turn_helix, mercury resistance
A9I66_RS07455	SM00853	MutL C terminal dimerisation domain
A9I66_RS07455	SM01340	A9I66_RS07455
A9I66_RS07460	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A9I66_RS07460	SM00534	ATPase domain of DNA mismatch repair MUTS family
A9I66_RS07475	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS07505	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A9I66_RS07515	SM00322	K homology RNA-binding domain
A9I66_RS07515	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9I66_RS07520	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS07525	SM00852	Probable molybdopterin binding domain
A9I66_RS07570	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS07580	SM01387	A9I66_RS07580
A9I66_RS07585	SM00904	Riboflavin kinase
A9I66_RS07685	SM00244	prohibitin homologues
A9I66_RS07730	SM00318	Staphylococcal nuclease homologues
A9I66_RS07750	SM00481	DNA polymerase alpha chain like domain
A9I66_RS07820	SM00966	SpoVT / AbrB like domain 
A9I66_RS08340	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS08340	SM00322	K homology RNA-binding domain
A9I66_RS08350	SM00479	A9I66_RS08350
A9I66_RS08350	SM00481	DNA polymerase alpha chain like domain
A9I66_RS08405	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS08405	SM01086	C-terminal, D2-small domain, of ClpB protein
A9I66_RS08435	SM00881	CoA binding domain
A9I66_RS08570	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS08570	SM00962	SRP54-type protein, GTPase domain
A9I66_RS08570	SM00963	SRP54-type protein, helical bundle domain
A9I66_RS08580	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS08580	SM00962	SRP54-type protein, GTPase domain
A9I66_RS08580	SM00963	SRP54-type protein, helical bundle domain
A9I66_RS08585	SM00968	SMC proteins Flexible Hinge Domain
A9I66_RS08590	SM00358	Double-stranded RNA binding motif
A9I66_RS08590	SM00535	Ribonuclease III family
A9I66_RS08600	SM00822	A9I66_RS08600
A9I66_RS08605	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A9I66_RS08620	SM00487	DEAD-like helicases superfamily
A9I66_RS08620	SM00490	helicase superfamily c-terminal domain
A9I66_RS08635	SM01120	A9I66_RS08635
A9I66_RS08635	SM01121	A9I66_RS08635
A9I66_RS08650	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A9I66_RS08670	SM00220	Serine/Threonine protein kinases, catalytic domain
A9I66_RS08670	SM00740	A9I66_RS08670
A9I66_RS08675	SM00331	Sigma factor PP2C-like phosphatases
A9I66_RS08675	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A9I66_RS08700	SM00487	DEAD-like helicases superfamily
A9I66_RS08700	SM00490	helicase superfamily c-terminal domain
A9I66_RS08710	SM01409	A9I66_RS08710
A9I66_RS08715	SM00072	Guanylate kinase homologues.
A9I66_RS08735	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A9I66_RS08750	SM00851	MGS-like domain
A9I66_RS08750	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A9I66_RS08750	SM01209	A9I66_RS08750
A9I66_RS08755	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A9I66_RS08780	SM00363	S4 RNA-binding domain
A9I66_RS08800	SM00363	S4 RNA-binding domain
A9I66_RS08825	SM01130	A9I66_RS08825
A9I66_RS08865	SM00864	Tubulin/FtsZ family, GTPase domain
A9I66_RS08865	SM00865	Tubulin/FtsZ family, C-terminal domain
A9I66_RS08870	SM00842	Cell division protein FtsA
A9I66_RS08890	SM00740	A9I66_RS08890
A9I66_RS08965	SM00100	Cyclic nucleotide-monophosphate binding domain
A9I66_RS08965	SM00419	helix_turn_helix, cAMP Regulatory protein
A9I66_RS08985	SM00857	Resolvase, N terminal domain
A9I66_RS09030	SM00465	GIY-YIG type nucleases (URI domain)
A9I66_RS09040	SM00463	Small MutS-related domain
A9I66_RS09040	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A9I66_RS09040	SM00534	ATPase domain of DNA mismatch repair MUTS family
A9I66_RS09045	SM00481	DNA polymerase alpha chain like domain
A9I66_RS09045	SM00483	DNA polymerase X family
A9I66_RS09070	SM00873	B3/4 domain
A9I66_RS09070	SM00874	tRNA synthetase B5 domain
A9I66_RS09070	SM00896	Ferredoxin-fold anticodon binding domain
A9I66_RS09190	SM00838	Elongation factor G C-terminus
A9I66_RS09235	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09260	SM00861	Transketolase, pyrimidine binding domain
A9I66_RS09290	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS09345	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09355	SM01209	A9I66_RS09355
A9I66_RS09355	SM01210	A9I66_RS09355
A9I66_RS09360	SM00798	AICARFT/IMPCHase bienzyme
A9I66_RS09360	SM00851	MGS-like domain
A9I66_RS09385	SM01211	A9I66_RS09385
A9I66_RS09405	SM01001	AIR carboxylase
A9I66_RS09505	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09535	SM00984	UDP binding domain
A9I66_RS09560	SM00047	Lysozyme subfamily 2
A9I66_RS09560	SM00644	A9I66_RS09560
A9I66_RS09610	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09640	SM00914	A9I66_RS09640
A9I66_RS09725	SM00857	Resolvase, N terminal domain
A9I66_RS09775	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9I66_RS09860	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9I66_RS09860	SM00924	MgtE intracellular N domain
A9I66_RS09875	SM00954	Region found in RelA / SpoT proteins
A9I66_RS09885	SM01118	A9I66_RS09885
A9I66_RS09945	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09950	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09970	SM00825	Beta-ketoacyl synthase
A9I66_RS09990	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS09990	SM01086	C-terminal, D2-small domain, of ClpB protein
A9I66_RS10065	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A9I66_RS10080	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS10095	SM00357	Cold shock protein domain
A9I66_RS10100	SM00834	Putative regulatory protein
A9I66_RS10120	SM01298	A9I66_RS10120
A9I66_RS10230	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS10290	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS10315	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS10315	SM00930	A9I66_RS10315
A9I66_RS10325	SM00493	A9I66_RS10325
A9I66_RS10355	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9I66_RS10425	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS10425	SM00357	Cold shock protein domain
A9I66_RS10425	SM00955	A9I66_RS10425
A9I66_RS10445	SM01192	A9I66_RS10445
A9I66_RS10445	SM01193	A9I66_RS10445
A9I66_RS10465	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A9I66_RS10515	SM00646	A9I66_RS10515
A9I66_RS10555	SM00635	Bacterial Ig-like domain 2
A9I66_RS10610	SM00507	HNH nucleases
A9I66_RS10775	SM01040	BRO family, N-terminal domain
A9I66_RS10830	SM00028	Tetratricopeptide repeats
A9I66_RS10860	SM00487	DEAD-like helicases superfamily
A9I66_RS10860	SM00490	helicase superfamily c-terminal domain
A9I66_RS10875	SM00937	A9I66_RS10875
A9I66_RS10880	SM00957	SecA DEAD-like domain
A9I66_RS10880	SM00958	SecA preprotein cross-linking domain
A9I66_RS10895	SM00487	DEAD-like helicases superfamily
A9I66_RS10895	SM00490	helicase superfamily c-terminal domain
A9I66_RS10915	SM00267	diguanylate cyclase
A9I66_RS11050	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A9I66_RS11070	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11075	SM00341	Helicase and RNase D C-terminal
A9I66_RS11075	SM00487	DEAD-like helicases superfamily
A9I66_RS11075	SM00490	helicase superfamily c-terminal domain
A9I66_RS11075	SM00956	A9I66_RS11075
A9I66_RS11080	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11115	SM00797	Allophanate hydrolase subunit 2
A9I66_RS11120	SM00796	Allophanate hydrolase subunit 1
A9I66_RS11175	SM01091	Transporter associated domain
A9I66_RS11190	SM00420	helix_turn_helix, Deoxyribose operon repressor
A9I66_RS11190	SM01134	A9I66_RS11190
A9I66_RS11265	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A9I66_RS11270	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS11275	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11280	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11385	SM00257	Lysin motif
A9I66_RS11405	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11410	SM00387	Histidine kinase-like ATPases
A9I66_RS11415	SM00448	cheY-homologous receiver domain
A9I66_RS11415	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS11460	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11475	SM00899	A9I66_RS11475
A9I66_RS11490	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11525	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11545	SM00470	ParB-like nuclease domain
A9I66_RS11605	SM00529	Helix-turn-helix diphteria tox regulatory element
A9I66_RS11610	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS11735	SM00836	DALR anticodon binding domain
A9I66_RS11735	SM01016	Arginyl tRNA synthetase N terminal dom
A9I66_RS11750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9I66_RS11845	SM00646	A9I66_RS11845
A9I66_RS11870	SM00047	Lysozyme subfamily 2
A9I66_RS11890	SM00710	Parallel beta-helix repeats
A9I66_RS11955	SM00959	Rho termination factor, N-terminal domain
A9I66_RS12125	SM01040	BRO family, N-terminal domain
A9I66_RS12135	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS12140	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS12150	SM00857	Resolvase, N terminal domain
A9I66_RS12210	SM00226	Low molecular weight phosphatase family
A9I66_RS12220	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A9I66_RS12265	SM00986	Uracil DNA glycosylase superfamily
A9I66_RS12265	SM00987	UreE urease accessory protein, C-terminal domain 
A9I66_RS12295	SM00855	Phosphoglycerate mutase family
A9I66_RS12320	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12370	SM00903	Flavin reductase like domain
A9I66_RS12380	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A9I66_RS12420	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12485	SM01321	A9I66_RS12485
A9I66_RS12535	SM00663	RNA polymerase I subunit A N-terminus
A9I66_RS12565	SM00649	Ribosomal protein L11/L12
A9I66_RS12570	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A9I66_RS12570	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9I66_RS12590	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A9I66_RS12600	SM00840	A9I66_RS12600
A9I66_RS12625	SM00670	Large family of predicted nucleotide-binding domains
A9I66_RS12630	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12640	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12665	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12665	SM01086	C-terminal, D2-small domain, of ClpB protein
A9I66_RS12705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS12810	SM00905	Dihydroneopterin aldolase
A9I66_RS12835	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS12845	SM00977	TilS substrate C-terminal domain
A9I66_RS12850	SM00316	Ribosomal protein S1-like RNA-binding domain
A9I66_RS12860	SM00363	S4 RNA-binding domain
A9I66_RS12875	SM00487	DEAD-like helicases superfamily
A9I66_RS12875	SM00490	helicase superfamily c-terminal domain
A9I66_RS12875	SM00982	A9I66_RS12875
A9I66_RS12875	SM01058	CarD-like/TRCF domain
A9I66_RS12890	SM01400	A9I66_RS12890
A9I66_RS12925	SM00650	Ribosomal RNA adenine dimethylases
A9I66_RS12930	SM00493	A9I66_RS12930
A9I66_RS13010	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9I66_RS13010	SM00493	A9I66_RS13010
A9I66_RS13020	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9I66_RS13035	SM00866	A9I66_RS13035
A9I66_RS13040	SM00642	Alpha-amylase domain
A9I66_RS13100	SM00257	Lysin motif
A9I66_RS13135	SM00448	cheY-homologous receiver domain
A9I66_RS13135	SM00862	Transcriptional regulatory protein, C terminal
A9I66_RS13140	SM00387	Histidine kinase-like ATPases
A9I66_RS13140	SM00388	His Kinase A (phosphoacceptor) domain
A9I66_RS13230	SM00450	Rhodanese Homology Domain
A9I66_RS13230	SM00849	Metallo-beta-lactamase superfamily
A9I66_RS13235	SM00450	Rhodanese Homology Domain
A9I66_RS13280	SM00857	Resolvase, N terminal domain
A9I66_RS13300	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13305	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13365	SM00318	Staphylococcal nuclease homologues
A9I66_RS13365	SM00894	Excalibur calcium-binding domain
A9I66_RS13390	SM00942	Primase C terminal 1 (PriCT-1)
A9I66_RS13405	SM01040	BRO family, N-terminal domain
A9I66_RS13415	SM00530	Helix-turn-helix XRE-family like proteins 
A9I66_RS13435	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9I66_RS13435	SM01240	A9I66_RS13435
A9I66_RS13475	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13510	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9I66_RS13510	SM00876	Biotin and Thiamin Synthesis associated domain
A9I66_RS13520	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13520	SM00930	A9I66_RS13520
A9I66_RS13540	SM01060	A9I66_RS13540
A9I66_RS13575	SM00382	ATPases associated with a variety of cellular activities
A9I66_RS13610	SM00470	ParB-like nuclease domain
A9I66_RS13650	SM00988	UreE urease accessory protein, N-terminal domain
A9I66_RS13665	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9I66_RS13675	SM00903	Flavin reductase like domain
A9I66_RS13695	SM00470	ParB-like nuclease domain
A9I66_RS13705	SM01228	A9I66_RS13705
