AL494_RS00010	SM00422	helix_turn_helix, mercury resistance
AL494_RS00015	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS00025	SM00470	ParB-like nuclease domain
AL494_RS00035	SM01228	AL494_RS00035
AL494_RS00055	SM00382	ATPases associated with a variety of cellular activities
AL494_RS00055	SM00760	Bacterial dnaA protein helix-turn-helix domain
AL494_RS00060	SM00480	DNA polymerase III beta subunit
AL494_RS00075	SM00387	Histidine kinase-like ATPases
AL494_RS00075	SM00433	TopoisomeraseII
AL494_RS00080	SM00434	DNA Topoisomerase IV
AL494_RS00120	SM00267	diguanylate cyclase
AL494_RS00135	SM00788	Adenylosuccinate synthetase
AL494_RS00155	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS00165	SM00448	cheY-homologous receiver domain
AL494_RS00165	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS00170	SM00091	PAS domain
AL494_RS00170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL494_RS00170	SM00387	Histidine kinase-like ATPases
AL494_RS00170	SM00388	His Kinase A (phosphoacceptor) domain
AL494_RS00185	SM00849	Metallo-beta-lactamase superfamily
AL494_RS00265	SM00450	Rhodanese Homology Domain
AL494_RS00270	SM00450	Rhodanese Homology Domain
AL494_RS00270	SM00849	Metallo-beta-lactamase superfamily
AL494_RS00280	SM00226	Low molecular weight phosphatase family
AL494_RS00290	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL494_RS00320	SM01060	AL494_RS00320
AL494_RS00340	SM00422	helix_turn_helix, mercury resistance
AL494_RS00355	SM00829	Enoylreductase
AL494_RS00455	SM00927	DNA mismatch repair enzyme MutH
AL494_RS00465	SM00422	helix_turn_helix, mercury resistance
AL494_RS00575	SM00382	ATPases associated with a variety of cellular activities
AL494_RS00625	SM00849	Metallo-beta-lactamase superfamily
AL494_RS00635	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS00645	SM01038	Beta galactosidase small chain
AL494_RS00685	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS00740	SM00450	Rhodanese Homology Domain
AL494_RS00770	SM00382	ATPases associated with a variety of cellular activities
AL494_RS00800	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS00945	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS00965	SM01001	AIR carboxylase
AL494_RS01005	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS01015	SM00155	Phospholipase D. Active site motifs.
AL494_RS01020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS01110	SM00854	Bacterial capsule synthesis protein PGA_cap
AL494_RS01140	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01160	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL494_RS01235	SM00849	Metallo-beta-lactamase superfamily
AL494_RS01240	SM00829	Enoylreductase
AL494_RS01265	SM00062	Bacterial periplasmic substrate-binding proteins
AL494_RS01265	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL494_RS01275	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01360	SM00988	UreE urease accessory protein, N-terminal domain
AL494_RS01400	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01405	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01415	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS01490	SM00478	endonuclease III
AL494_RS01540	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01570	SM01266	AL494_RS01570
AL494_RS01610	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS01750	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS01775	SM00854	Bacterial capsule synthesis protein PGA_cap
AL494_RS01820	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01825	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS01830	SM00354	helix_turn _helix lactose operon repressor
AL494_RS01845	SM00829	Enoylreductase
AL494_RS01890	SM01130	AL494_RS01890
AL494_RS01925	SM01061	CAT RNA binding domain
AL494_RS01940	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01945	SM00382	ATPases associated with a variety of cellular activities
AL494_RS01965	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS02060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS02060	SM00895	AL494_RS02060
AL494_RS02210	SM00382	ATPases associated with a variety of cellular activities
AL494_RS02255	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL494_RS02255	SM00382	ATPases associated with a variety of cellular activities
AL494_RS02295	SM00382	ATPases associated with a variety of cellular activities
AL494_RS02315	SM00448	cheY-homologous receiver domain
AL494_RS02315	SM00850	LytTr DNA-binding domain
AL494_RS02320	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL494_RS02320	SM00387	Histidine kinase-like ATPases
AL494_RS02380	SM00871	Bacterial transcription activator, effector binding domain
AL494_RS02405	SM00855	Phosphoglycerate mutase family
AL494_RS02415	SM01022	AL494_RS02415
AL494_RS02450	SM00867	YceI-like domain 
AL494_RS02515	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS02535	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS02540	SM00644	AL494_RS02540
AL494_RS02590	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL494_RS02590	SM01134	AL494_RS02590
AL494_RS02595	SM00829	Enoylreductase
AL494_RS02605	SM01120	AL494_RS02605
AL494_RS02640	SM00829	Enoylreductase
AL494_RS02675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL494_RS02675	SM00387	Histidine kinase-like ATPases
AL494_RS02675	SM00388	His Kinase A (phosphoacceptor) domain
AL494_RS02680	SM00448	cheY-homologous receiver domain
AL494_RS02680	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS02690	SM00382	ATPases associated with a variety of cellular activities
AL494_RS02700	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS02795	SM00382	ATPases associated with a variety of cellular activities
AL494_RS02860	SM00903	Flavin reductase like domain
AL494_RS02935	SM00098	Alkaline phosphatase homologues
AL494_RS02965	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL494_RS02980	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL494_RS02980	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AL494_RS02995	SM00047	Lysozyme subfamily 2
AL494_RS03075	SM00062	Bacterial periplasmic substrate-binding proteins
AL494_RS03080	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03110	SM00354	helix_turn _helix lactose operon repressor
AL494_RS03140	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03160	SM00852	Probable molybdopterin binding domain
AL494_RS03170	SM00852	Probable molybdopterin binding domain
AL494_RS03195	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL494_RS03210	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS03260	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL494_RS03260	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL494_RS03260	SM00493	AL494_RS03260
AL494_RS03275	SM01403	AL494_RS03275
AL494_RS03295	SM01382	AL494_RS03295
AL494_RS03295	SM01383	AL494_RS03295
AL494_RS03310	SM00322	K homology RNA-binding domain
AL494_RS03330	SM01374	AL494_RS03330
AL494_RS03335	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL494_RS03390	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS03410	SM00662	RNA polymerases D
AL494_RS03420	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03425	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03460	SM00829	Enoylreductase
AL494_RS03465	SM00829	Enoylreductase
AL494_RS03665	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03690	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL494_RS03700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS03700	SM00895	AL494_RS03700
AL494_RS03745	SM01133	AL494_RS03745
AL494_RS03750	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AL494_RS03825	SM00357	Cold shock protein domain
AL494_RS03825	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03825	SM00959	Rho termination factor, N-terminal domain
AL494_RS03840	SM00937	AL494_RS03840
AL494_RS03855	SM00226	Low molecular weight phosphatase family
AL494_RS03915	SM00382	ATPases associated with a variety of cellular activities
AL494_RS03980	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS03985	SM00155	Phospholipase D. Active site motifs.
AL494_RS04015	SM00487	DEAD-like helicases superfamily
AL494_RS04015	SM00490	helicase superfamily c-terminal domain
AL494_RS04040	SM01005	Alanine racemase, C-terminal domain
AL494_RS04055	SM00331	Sigma factor PP2C-like phosphatases
AL494_RS04055	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AL494_RS04075	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS04075	SM00732	Likely ribonuclease with RNase H fold.
AL494_RS04080	SM00731	SprT homologues.
AL494_RS04130	SM01329	AL494_RS04130
AL494_RS04135	SM00917	LeuA allosteric (dimerisation) domain
AL494_RS04185	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL494_RS04190	SM00382	ATPases associated with a variety of cellular activities
AL494_RS04195	SM00881	CoA binding domain
AL494_RS04210	SM00354	helix_turn _helix lactose operon repressor
AL494_RS04215	SM00640	Glycosyl hydrolases family 32
AL494_RS04225	SM00448	cheY-homologous receiver domain
AL494_RS04225	SM00850	LytTr DNA-binding domain
AL494_RS04235	SM00794	Staphylococcal AgrD protein
AL494_RS04240	SM00793	Accessory gene regulator B
AL494_RS04265	SM00883	Chaperonin 10 Kd subunit
AL494_RS04280	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS04285	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS04305	SM00942	Primase C terminal 1 (PriCT-1)
AL494_RS04400	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS04425	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS04430	SM00382	ATPases associated with a variety of cellular activities
AL494_RS04445	SM00382	ATPases associated with a variety of cellular activities
AL494_RS04495	SM01131	AL494_RS04495
AL494_RS04505	SM00710	Parallel beta-helix repeats
AL494_RS04545	SM00998	Adenylosuccinate lyase C-terminus
AL494_RS04570	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL494_RS04570	SM00292	breast cancer carboxy-terminal domain
AL494_RS04570	SM00532	Ligase N family
AL494_RS04595	SM00845	GatB domain
AL494_RS04600	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL494_RS04620	SM00479	AL494_RS04620
AL494_RS04670	SM00387	Histidine kinase-like ATPases
AL494_RS04675	SM00421	helix_turn_helix, Lux Regulon
AL494_RS04675	SM00448	cheY-homologous receiver domain
AL494_RS04690	SM00226	Low molecular weight phosphatase family
AL494_RS04750	SM00478	endonuclease III
AL494_RS04760	SM00382	ATPases associated with a variety of cellular activities
AL494_RS04945	SM00062	Bacterial periplasmic substrate-binding proteins
AL494_RS04945	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL494_RS04950	SM00382	ATPases associated with a variety of cellular activities
AL494_RS04955	SM00567	E-Z type HEAT repeats
AL494_RS04995	SM00421	helix_turn_helix, Lux Regulon
AL494_RS04995	SM00448	cheY-homologous receiver domain
AL494_RS05025	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS05050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS05075	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05165	SM01234	AL494_RS05165
AL494_RS05245	SM00047	Lysozyme subfamily 2
AL494_RS05315	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL494_RS05330	SM00450	Rhodanese Homology Domain
AL494_RS05345	SM00363	S4 RNA-binding domain
AL494_RS05375	SM00849	Metallo-beta-lactamase superfamily
AL494_RS05405	SM00843	AL494_RS05405
AL494_RS05425	SM00830	Chorismate mutase type II
AL494_RS05430	SM00354	helix_turn _helix lactose operon repressor
AL494_RS05460	SM00363	S4 RNA-binding domain
AL494_RS05465	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL494_RS05470	SM00563	Phosphate acyltransferases
AL494_RS05510	SM00363	S4 RNA-binding domain
AL494_RS05510	SM01390	AL494_RS05510
AL494_RS05515	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL494_RS05530	SM00981	AL494_RS05530
AL494_RS05575	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL494_RS05575	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL494_RS05590	SM00849	Metallo-beta-lactamase superfamily
AL494_RS05600	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL494_RS05610	SM00481	DNA polymerase alpha chain like domain
AL494_RS05615	SM00919	Malic enzyme, NAD binding domain
AL494_RS05615	SM01274	AL494_RS05615
AL494_RS05650	SM01329	AL494_RS05650
AL494_RS05655	SM00448	cheY-homologous receiver domain
AL494_RS05655	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS05660	SM00387	Histidine kinase-like ATPases
AL494_RS05660	SM00388	His Kinase A (phosphoacceptor) domain
AL494_RS05665	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL494_RS05665	SM00474	3'-5' exonuclease
AL494_RS05665	SM00475	5'-3' exonuclease
AL494_RS05665	SM00482	DNA polymerase A domain
AL494_RS05670	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL494_RS05670	SM01232	AL494_RS05670
AL494_RS05680	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL494_RS05700	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL494_RS05740	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05740	SM00994	ClpX C4-type zinc finger
AL494_RS05740	SM01086	C-terminal, D2-small domain, of ClpB protein
AL494_RS05770	SM01004	Delta-aminolevulinic acid dehydratase
AL494_RS05865	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL494_RS05870	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05885	SM01323	AL494_RS05885
AL494_RS05905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS05905	SM00954	Region found in RelA / SpoT proteins
AL494_RS05915	SM00287	Bacterial SH3 domain homologues
AL494_RS05915	SM00646	AL494_RS05915
AL494_RS05940	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05965	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05980	SM00028	Tetratricopeptide repeats
AL494_RS05985	SM00382	ATPases associated with a variety of cellular activities
AL494_RS05990	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL494_RS06000	SM00732	Likely ribonuclease with RNase H fold.
AL494_RS06035	SM00796	Allophanate hydrolase subunit 1
AL494_RS06040	SM00797	Allophanate hydrolase subunit 2
AL494_RS06050	SM00878	Biotin carboxylase C-terminal domain
AL494_RS06085	SM01103	AL494_RS06085
AL494_RS06095	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS06110	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL494_RS06120	SM00849	Metallo-beta-lactamase superfamily
AL494_RS06135	SM00838	Elongation factor G C-terminus
AL494_RS06140	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL494_RS06160	SM00271	DnaJ molecular chaperone homology domain
AL494_RS06230	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL494_RS06240	SM00400	zinc finger
AL494_RS06240	SM00493	AL494_RS06240
AL494_RS06260	SM00487	DEAD-like helicases superfamily
AL494_RS06260	SM00490	helicase superfamily c-terminal domain
AL494_RS06265	SM00518	AP endonuclease family 2
AL494_RS06270	SM00382	ATPases associated with a variety of cellular activities
AL494_RS06325	SM00849	Metallo-beta-lactamase superfamily
AL494_RS06385	SM00450	Rhodanese Homology Domain
AL494_RS06410	SM00841	Elongation factor P, C-terminal
AL494_RS06410	SM01185	AL494_RS06410
AL494_RS06420	SM00878	Biotin carboxylase C-terminal domain
AL494_RS06475	SM00861	Transketolase, pyrimidine binding domain
AL494_RS06500	SM01350	AL494_RS06500
AL494_RS06505	SM00354	helix_turn _helix lactose operon repressor
AL494_RS06510	SM00642	Alpha-amylase domain
AL494_RS06515	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS06515	SM00871	Bacterial transcription activator, effector binding domain
AL494_RS06575	SM00363	S4 RNA-binding domain
AL494_RS06580	SM00448	cheY-homologous receiver domain
AL494_RS06580	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS06585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL494_RS06585	SM00387	Histidine kinase-like ATPases
AL494_RS06585	SM00388	His Kinase A (phosphoacceptor) domain
AL494_RS06605	SM00487	DEAD-like helicases superfamily
AL494_RS06605	SM00490	helicase superfamily c-terminal domain
AL494_RS06610	SM00257	Lysin motif
AL494_RS06620	SM00870	AL494_RS06620
AL494_RS06630	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS06645	SM00411	bacterial (prokaryotic) histone like domain
AL494_RS06665	SM00562	AL494_RS06665
AL494_RS06685	SM00028	Tetratricopeptide repeats
AL494_RS06690	SM00914	AL494_RS06690
AL494_RS06725	SM00479	AL494_RS06725
AL494_RS06725	SM00491	AL494_RS06725
AL494_RS06740	SM00478	endonuclease III
AL494_RS06780	SM00981	AL494_RS06780
AL494_RS06795	SM00644	AL494_RS06795
AL494_RS06805	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL494_RS06805	SM00475	5'-3' exonuclease
AL494_RS06830	SM00932	Scaffold protein Nfu/NifU N terminal
AL494_RS06835	SM00567	E-Z type HEAT repeats
AL494_RS06835	SM00932	Scaffold protein Nfu/NifU N terminal
AL494_RS06880	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL494_RS06880	SM00245	tail specific protease
AL494_RS06895	SM00014	Acid phosphatase homologues
AL494_RS06900	SM00448	cheY-homologous receiver domain
AL494_RS06900	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS06905	SM00387	Histidine kinase-like ATPases
AL494_RS06905	SM00388	His Kinase A (phosphoacceptor) domain
AL494_RS06910	SM00861	Transketolase, pyrimidine binding domain
AL494_RS06925	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS06965	SM00382	ATPases associated with a variety of cellular activities
AL494_RS06990	SM00382	ATPases associated with a variety of cellular activities
AL494_RS06995	SM00327	von Willebrand factor (vWF) type A domain
AL494_RS07030	SM00357	Cold shock protein domain
AL494_RS07040	SM01005	Alanine racemase, C-terminal domain
AL494_RS07060	SM01130	AL494_RS07060
AL494_RS07065	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL494_RS07080	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07105	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07245	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07255	SM00354	helix_turn _helix lactose operon repressor
AL494_RS07280	SM01061	CAT RNA binding domain
AL494_RS07290	SM00434	DNA Topoisomerase IV
AL494_RS07295	SM00387	Histidine kinase-like ATPases
AL494_RS07295	SM00433	TopoisomeraseII
AL494_RS07300	SM01207	AL494_RS07300
AL494_RS07360	SM00861	Transketolase, pyrimidine binding domain
AL494_RS07385	SM01240	AL494_RS07385
AL494_RS07400	SM01060	AL494_RS07400
AL494_RS07455	SM00318	Staphylococcal nuclease homologues
AL494_RS07465	SM00421	helix_turn_helix, Lux Regulon
AL494_RS07465	SM00448	cheY-homologous receiver domain
AL494_RS07470	SM00387	Histidine kinase-like ATPases
AL494_RS07480	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07520	SM00646	AL494_RS07520
AL494_RS07590	SM00635	Bacterial Ig-like domain 2
AL494_RS07645	SM00507	HNH nucleases
AL494_RS07655	SM00487	DEAD-like helicases superfamily
AL494_RS07660	SM00990	AL494_RS07660
AL494_RS07720	SM00482	DNA polymerase A domain
AL494_RS07750	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS07755	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS07775	SM01230	AL494_RS07775
AL494_RS07780	SM00422	helix_turn_helix, mercury resistance
AL494_RS07840	SM00853	MutL C terminal dimerisation domain
AL494_RS07840	SM01340	AL494_RS07840
AL494_RS07845	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL494_RS07845	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL494_RS07860	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL494_RS07905	SM00322	K homology RNA-binding domain
AL494_RS07905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS07910	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07915	SM00852	Probable molybdopterin binding domain
AL494_RS07950	SM00866	AL494_RS07950
AL494_RS07955	SM00382	ATPases associated with a variety of cellular activities
AL494_RS07955	SM00843	AL494_RS07955
AL494_RS07960	SM00849	Metallo-beta-lactamase superfamily
AL494_RS07965	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS07965	SM00322	K homology RNA-binding domain
AL494_RS07970	SM01387	AL494_RS07970
AL494_RS07975	SM00904	Riboflavin kinase
AL494_RS08015	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS08015	SM00322	K homology RNA-binding domain
AL494_RS08035	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL494_RS08075	SM00382	ATPases associated with a variety of cellular activities
AL494_RS08075	SM01086	C-terminal, D2-small domain, of ClpB protein
AL494_RS08095	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL494_RS08095	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL494_RS08095	SM00493	AL494_RS08095
AL494_RS08105	SM00881	CoA binding domain
AL494_RS08165	SM00382	ATPases associated with a variety of cellular activities
AL494_RS08165	SM00962	SRP54-type protein, GTPase domain
AL494_RS08165	SM00963	SRP54-type protein, helical bundle domain
AL494_RS08175	SM00382	ATPases associated with a variety of cellular activities
AL494_RS08175	SM00962	SRP54-type protein, GTPase domain
AL494_RS08175	SM00963	SRP54-type protein, helical bundle domain
AL494_RS08180	SM00968	SMC proteins Flexible Hinge Domain
AL494_RS08185	SM00358	Double-stranded RNA binding motif
AL494_RS08185	SM00535	Ribonuclease III family
AL494_RS08195	SM00822	AL494_RS08195
AL494_RS08200	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AL494_RS08220	SM00487	DEAD-like helicases superfamily
AL494_RS08220	SM00490	helicase superfamily c-terminal domain
AL494_RS08235	SM01120	AL494_RS08235
AL494_RS08235	SM01121	AL494_RS08235
AL494_RS08250	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
AL494_RS08265	SM00220	Serine/Threonine protein kinases, catalytic domain
AL494_RS08265	SM00740	AL494_RS08265
AL494_RS08270	SM00331	Sigma factor PP2C-like phosphatases
AL494_RS08270	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AL494_RS08300	SM00487	DEAD-like helicases superfamily
AL494_RS08300	SM00490	helicase superfamily c-terminal domain
AL494_RS08310	SM01409	AL494_RS08310
AL494_RS08315	SM00072	Guanylate kinase homologues.
AL494_RS08345	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL494_RS08350	SM00851	MGS-like domain
AL494_RS08350	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL494_RS08350	SM01209	AL494_RS08350
AL494_RS08355	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AL494_RS08380	SM00363	S4 RNA-binding domain
AL494_RS08405	SM00363	S4 RNA-binding domain
AL494_RS08430	SM00864	Tubulin/FtsZ family, GTPase domain
AL494_RS08430	SM00865	Tubulin/FtsZ family, C-terminal domain
AL494_RS08435	SM00842	Cell division protein FtsA
AL494_RS08455	SM00740	AL494_RS08455
AL494_RS08520	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL494_RS08595	SM00465	GIY-YIG type nucleases (URI domain)
AL494_RS08605	SM00463	Small MutS-related domain
AL494_RS08605	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL494_RS08605	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL494_RS08610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL494_RS08610	SM00481	DNA polymerase alpha chain like domain
AL494_RS08610	SM00483	DNA polymerase X family
AL494_RS08630	SM00873	B3/4 domain
AL494_RS08630	SM00874	tRNA synthetase B5 domain
AL494_RS08630	SM00896	Ferredoxin-fold anticodon binding domain
AL494_RS08640	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL494_RS08720	SM00878	Biotin carboxylase C-terminal domain
AL494_RS08740	SM00838	Elongation factor G C-terminus
AL494_RS08790	SM00382	ATPases associated with a variety of cellular activities
AL494_RS08795	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS08815	SM00861	Transketolase, pyrimidine binding domain
AL494_RS08845	SM00849	Metallo-beta-lactamase superfamily
AL494_RS08905	SM00382	ATPases associated with a variety of cellular activities
AL494_RS08915	SM01209	AL494_RS08915
AL494_RS08915	SM01210	AL494_RS08915
AL494_RS08920	SM00798	AICARFT/IMPCHase bienzyme
AL494_RS08920	SM00851	MGS-like domain
AL494_RS08945	SM01211	AL494_RS08945
AL494_RS08965	SM01001	AIR carboxylase
AL494_RS09035	SM00047	Lysozyme subfamily 2
AL494_RS09035	SM00644	AL494_RS09035
AL494_RS09040	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS09115	SM00914	AL494_RS09115
AL494_RS09145	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL494_RS09210	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL494_RS09210	SM00924	MgtE intracellular N domain
AL494_RS09225	SM00954	Region found in RelA / SpoT proteins
AL494_RS09235	SM01118	AL494_RS09235
AL494_RS09285	SM00382	ATPases associated with a variety of cellular activities
AL494_RS09290	SM00382	ATPases associated with a variety of cellular activities
AL494_RS09315	SM00825	Beta-ketoacyl synthase
AL494_RS09330	SM00382	ATPases associated with a variety of cellular activities
AL494_RS09330	SM01086	C-terminal, D2-small domain, of ClpB protein
AL494_RS09415	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL494_RS09430	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS09440	SM01298	AL494_RS09440
AL494_RS09580	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL494_RS09630	SM00382	ATPases associated with a variety of cellular activities
AL494_RS09660	SM00382	ATPases associated with a variety of cellular activities
AL494_RS09660	SM00930	AL494_RS09660
AL494_RS09670	SM00493	AL494_RS09670
AL494_RS09880	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS09880	SM00357	Cold shock protein domain
AL494_RS09880	SM00955	AL494_RS09880
AL494_RS09905	SM01192	AL494_RS09905
AL494_RS09905	SM01193	AL494_RS09905
AL494_RS09925	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL494_RS10000	SM00028	Tetratricopeptide repeats
AL494_RS10025	SM00487	DEAD-like helicases superfamily
AL494_RS10025	SM00490	helicase superfamily c-terminal domain
AL494_RS10040	SM00257	Lysin motif
AL494_RS10045	SM00937	AL494_RS10045
AL494_RS10050	SM00957	SecA DEAD-like domain
AL494_RS10050	SM00958	SecA preprotein cross-linking domain
AL494_RS10065	SM00487	DEAD-like helicases superfamily
AL494_RS10065	SM00490	helicase superfamily c-terminal domain
AL494_RS10085	SM00267	diguanylate cyclase
AL494_RS10145	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10195	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL494_RS10215	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10220	SM00341	Helicase and RNase D C-terminal
AL494_RS10220	SM00487	DEAD-like helicases superfamily
AL494_RS10220	SM00490	helicase superfamily c-terminal domain
AL494_RS10220	SM00956	AL494_RS10220
AL494_RS10225	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10240	SM00797	Allophanate hydrolase subunit 2
AL494_RS10245	SM00796	Allophanate hydrolase subunit 1
AL494_RS10300	SM01091	Transporter associated domain
AL494_RS10320	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL494_RS10320	SM01134	AL494_RS10320
AL494_RS10375	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL494_RS10380	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS10385	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10390	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS10495	SM00342	helix_turn_helix, arabinose operon control protein
AL494_RS10505	SM00257	Lysin motif
AL494_RS10520	SM00387	Histidine kinase-like ATPases
AL494_RS10525	SM00448	cheY-homologous receiver domain
AL494_RS10525	SM00862	Transcriptional regulatory protein, C terminal
AL494_RS10560	SM01120	AL494_RS10560
AL494_RS10580	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10595	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10625	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10640	SM00529	Helix-turn-helix diphteria tox regulatory element
AL494_RS10640	SM00899	AL494_RS10640
AL494_RS10645	SM00382	ATPases associated with a variety of cellular activities
AL494_RS10730	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS10770	SM00478	endonuclease III
AL494_RS10775	SM00836	DALR anticodon binding domain
AL494_RS10775	SM01016	Arginyl tRNA synthetase N terminal dom
AL494_RS10790	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL494_RS10860	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS10880	SM00986	Uracil DNA glycosylase superfamily
AL494_RS10880	SM00987	UreE urease accessory protein, C-terminal domain 
AL494_RS10895	SM01022	AL494_RS10895
AL494_RS10905	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL494_RS10940	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL494_RS11065	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL494_RS11100	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL494_RS11100	SM01134	AL494_RS11100
AL494_RS11120	SM00354	helix_turn _helix lactose operon repressor
AL494_RS11215	SM00882	Coenzyme A transferase
AL494_RS11220	SM00882	Coenzyme A transferase
AL494_RS11260	SM00838	Elongation factor G C-terminus
AL494_RS11260	SM00889	Elongation factor G, domain IV
AL494_RS11280	SM00663	RNA polymerase I subunit A N-terminus
AL494_RS11310	SM00649	Ribosomal protein L11/L12
AL494_RS11315	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AL494_RS11315	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL494_RS11340	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL494_RS11350	SM00840	AL494_RS11350
AL494_RS11365	SM00670	Large family of predicted nucleotide-binding domains
AL494_RS11370	SM00382	ATPases associated with a variety of cellular activities
AL494_RS11375	SM00382	ATPases associated with a variety of cellular activities
AL494_RS11375	SM01086	C-terminal, D2-small domain, of ClpB protein
AL494_RS11410	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS11505	SM00905	Dihydroneopterin aldolase
AL494_RS11525	SM00382	ATPases associated with a variety of cellular activities
AL494_RS11535	SM00977	TilS substrate C-terminal domain
AL494_RS11540	SM00316	Ribosomal protein S1-like RNA-binding domain
AL494_RS11550	SM00363	S4 RNA-binding domain
AL494_RS11565	SM00487	DEAD-like helicases superfamily
AL494_RS11565	SM00490	helicase superfamily c-terminal domain
AL494_RS11565	SM00982	AL494_RS11565
AL494_RS11565	SM01058	CarD-like/TRCF domain
AL494_RS11580	SM01400	AL494_RS11580
AL494_RS11615	SM00650	Ribosomal RNA adenine dimethylases
AL494_RS11620	SM00493	AL494_RS11620
AL494_RS11640	SM00465	GIY-YIG type nucleases (URI domain)
AL494_RS11695	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL494_RS11695	SM00493	AL494_RS11695
AL494_RS11705	SM00382	ATPases associated with a variety of cellular activities
AL494_RS11720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL494_RS11720	SM00866	AL494_RS11720
AL494_RS11725	SM00642	Alpha-amylase domain
AL494_RS11780	SM00257	Lysin motif
AL494_RS11865	SM00357	Cold shock protein domain
AL494_RS11920	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL494_RS11920	SM01240	AL494_RS11920
AL494_RS11965	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS11990	SM00855	Phosphoglycerate mutase family
AL494_RS12075	SM00344	helix_turn_helix ASNC type
AL494_RS12080	SM00257	Lysin motif
AL494_RS12080	SM00644	AL494_RS12080
AL494_RS12190	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL494_RS12195	SM00530	Helix-turn-helix XRE-family like proteins 
AL494_RS12260	SM00014	Acid phosphatase homologues
AL494_RS12335	SM00470	ParB-like nuclease domain
AL494_RS12410	SM00882	Coenzyme A transferase
AL494_RS12445	SM00899	AL494_RS12445
