AL528_RS00045	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00095	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL528_RS00115	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00120	SM00341	Helicase and RNase D C-terminal
AL528_RS00120	SM00487	DEAD-like helicases superfamily
AL528_RS00120	SM00490	helicase superfamily c-terminal domain
AL528_RS00120	SM00956	AL528_RS00120
AL528_RS00125	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00140	SM00797	Allophanate hydrolase subunit 2
AL528_RS00145	SM00796	Allophanate hydrolase subunit 1
AL528_RS00205	SM01091	Transporter associated domain
AL528_RS00225	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL528_RS00225	SM01134	AL528_RS00225
AL528_RS00285	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL528_RS00290	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS00295	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00300	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS00405	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS00415	SM00257	Lysin motif
AL528_RS00430	SM00387	Histidine kinase-like ATPases
AL528_RS00435	SM00448	cheY-homologous receiver domain
AL528_RS00435	SM00862	Transcriptional regulatory protein, C terminal
AL528_RS00470	SM01120	AL528_RS00470
AL528_RS00490	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00505	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00535	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00550	SM00529	Helix-turn-helix diphteria tox regulatory element
AL528_RS00550	SM00899	AL528_RS00550
AL528_RS00555	SM00382	ATPases associated with a variety of cellular activities
AL528_RS00640	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS00680	SM00478	endonuclease III
AL528_RS00685	SM00836	DALR anticodon binding domain
AL528_RS00685	SM01016	Arginyl tRNA synthetase N terminal dom
AL528_RS00700	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS00770	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS00790	SM00986	Uracil DNA glycosylase superfamily
AL528_RS00790	SM00987	UreE urease accessory protein, C-terminal domain 
AL528_RS00805	SM01022	AL528_RS00805
AL528_RS00815	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS00850	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL528_RS00975	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL528_RS01010	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL528_RS01010	SM01134	AL528_RS01010
AL528_RS01030	SM00354	helix_turn _helix lactose operon repressor
AL528_RS01105	SM00882	Coenzyme A transferase
AL528_RS01110	SM00882	Coenzyme A transferase
AL528_RS01150	SM00838	Elongation factor G C-terminus
AL528_RS01150	SM00889	Elongation factor G, domain IV
AL528_RS01170	SM00663	RNA polymerase I subunit A N-terminus
AL528_RS01205	SM00649	Ribosomal protein L11/L12
AL528_RS01210	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AL528_RS01210	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL528_RS01235	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL528_RS01245	SM00840	AL528_RS01245
AL528_RS01260	SM00670	Large family of predicted nucleotide-binding domains
AL528_RS01265	SM00382	ATPases associated with a variety of cellular activities
AL528_RS01270	SM00382	ATPases associated with a variety of cellular activities
AL528_RS01270	SM01086	C-terminal, D2-small domain, of ClpB protein
AL528_RS01305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS01400	SM00905	Dihydroneopterin aldolase
AL528_RS01420	SM00382	ATPases associated with a variety of cellular activities
AL528_RS01430	SM00977	TilS substrate C-terminal domain
AL528_RS01435	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS01445	SM00363	S4 RNA-binding domain
AL528_RS01460	SM00487	DEAD-like helicases superfamily
AL528_RS01460	SM00490	helicase superfamily c-terminal domain
AL528_RS01460	SM00982	AL528_RS01460
AL528_RS01460	SM01058	CarD-like/TRCF domain
AL528_RS01475	SM01400	AL528_RS01475
AL528_RS01510	SM00650	Ribosomal RNA adenine dimethylases
AL528_RS01515	SM00493	AL528_RS01515
AL528_RS01535	SM00465	GIY-YIG type nucleases (URI domain)
AL528_RS01590	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL528_RS01590	SM00493	AL528_RS01590
AL528_RS01600	SM00382	ATPases associated with a variety of cellular activities
AL528_RS01615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS01615	SM00866	AL528_RS01615
AL528_RS01620	SM00642	Alpha-amylase domain
AL528_RS01675	SM00257	Lysin motif
AL528_RS01760	SM00357	Cold shock protein domain
AL528_RS01865	SM00942	Primase C terminal 1 (PriCT-1)
AL528_RS01880	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS01900	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL528_RS01900	SM01240	AL528_RS01900
AL528_RS01945	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS01970	SM00855	Phosphoglycerate mutase family
AL528_RS02055	SM00344	helix_turn_helix ASNC type
AL528_RS02060	SM00257	Lysin motif
AL528_RS02060	SM00644	AL528_RS02060
AL528_RS02175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS02180	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS02240	SM00014	Acid phosphatase homologues
AL528_RS02315	SM00470	ParB-like nuclease domain
AL528_RS02390	SM00882	Coenzyme A transferase
AL528_RS02425	SM00899	AL528_RS02425
AL528_RS02430	SM00953	AL528_RS02430
AL528_RS02435	SM00422	helix_turn_helix, mercury resistance
AL528_RS02440	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS02450	SM00470	ParB-like nuclease domain
AL528_RS02460	SM01228	AL528_RS02460
AL528_RS02480	SM00382	ATPases associated with a variety of cellular activities
AL528_RS02480	SM00760	Bacterial dnaA protein helix-turn-helix domain
AL528_RS02485	SM00480	DNA polymerase III beta subunit
AL528_RS02500	SM00387	Histidine kinase-like ATPases
AL528_RS02500	SM00433	TopoisomeraseII
AL528_RS02505	SM00434	DNA Topoisomerase IV
AL528_RS02545	SM00267	diguanylate cyclase
AL528_RS02560	SM00788	Adenylosuccinate synthetase
AL528_RS02580	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS02590	SM00448	cheY-homologous receiver domain
AL528_RS02590	SM00862	Transcriptional regulatory protein, C terminal
AL528_RS02595	SM00091	PAS domain
AL528_RS02595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL528_RS02595	SM00387	Histidine kinase-like ATPases
AL528_RS02595	SM00388	His Kinase A (phosphoacceptor) domain
AL528_RS02610	SM00849	Metallo-beta-lactamase superfamily
AL528_RS02685	SM00450	Rhodanese Homology Domain
AL528_RS02690	SM00450	Rhodanese Homology Domain
AL528_RS02690	SM00849	Metallo-beta-lactamase superfamily
AL528_RS02700	SM00226	Low molecular weight phosphatase family
AL528_RS02710	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS02720	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS02740	SM00422	helix_turn_helix, mercury resistance
AL528_RS02790	SM01060	AL528_RS02790
AL528_RS02810	SM00422	helix_turn_helix, mercury resistance
AL528_RS02825	SM00829	Enoylreductase
AL528_RS02895	SM00507	HNH nucleases
AL528_RS02980	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03035	SM00849	Metallo-beta-lactamase superfamily
AL528_RS03045	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS03055	SM01038	Beta galactosidase small chain
AL528_RS03090	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS03150	SM00450	Rhodanese Homology Domain
AL528_RS03180	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03210	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS03360	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS03395	SM01001	AIR carboxylase
AL528_RS03435	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS03445	SM00155	Phospholipase D. Active site motifs.
AL528_RS03450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS03550	SM00854	Bacterial capsule synthesis protein PGA_cap
AL528_RS03580	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03600	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL528_RS03670	SM00849	Metallo-beta-lactamase superfamily
AL528_RS03675	SM00829	Enoylreductase
AL528_RS03700	SM00062	Bacterial periplasmic substrate-binding proteins
AL528_RS03700	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL528_RS03710	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03800	SM00988	UreE urease accessory protein, N-terminal domain
AL528_RS03840	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03845	SM00382	ATPases associated with a variety of cellular activities
AL528_RS03855	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS03930	SM00478	endonuclease III
AL528_RS03980	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04015	SM01266	AL528_RS04015
AL528_RS04055	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS04195	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS04220	SM00854	Bacterial capsule synthesis protein PGA_cap
AL528_RS04265	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04270	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS04275	SM00354	helix_turn _helix lactose operon repressor
AL528_RS04290	SM00829	Enoylreductase
AL528_RS04335	SM01130	AL528_RS04335
AL528_RS04375	SM01061	CAT RNA binding domain
AL528_RS04390	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04395	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04415	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS04510	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS04510	SM00895	AL528_RS04510
AL528_RS04660	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04705	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL528_RS04705	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04745	SM00382	ATPases associated with a variety of cellular activities
AL528_RS04765	SM00448	cheY-homologous receiver domain
AL528_RS04765	SM00850	LytTr DNA-binding domain
AL528_RS04770	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL528_RS04770	SM00387	Histidine kinase-like ATPases
AL528_RS04830	SM00871	Bacterial transcription activator, effector binding domain
AL528_RS04855	SM00855	Phosphoglycerate mutase family
AL528_RS04870	SM01022	AL528_RS04870
AL528_RS04900	SM00867	YceI-like domain 
AL528_RS04965	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS04970	SM00857	Resolvase, N terminal domain
AL528_RS04985	SM00857	Resolvase, N terminal domain
AL528_RS04995	SM00857	Resolvase, N terminal domain
AL528_RS05030	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS05035	SM00644	AL528_RS05035
AL528_RS05080	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL528_RS05080	SM01134	AL528_RS05080
AL528_RS05085	SM00829	Enoylreductase
AL528_RS05095	SM01120	AL528_RS05095
AL528_RS05130	SM00829	Enoylreductase
AL528_RS05165	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL528_RS05165	SM00387	Histidine kinase-like ATPases
AL528_RS05165	SM00388	His Kinase A (phosphoacceptor) domain
AL528_RS05180	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05190	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS05285	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05350	SM00903	Flavin reductase like domain
AL528_RS05425	SM00098	Alkaline phosphatase homologues
AL528_RS05455	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL528_RS05470	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL528_RS05470	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AL528_RS05485	SM00047	Lysozyme subfamily 2
AL528_RS05565	SM00062	Bacterial periplasmic substrate-binding proteins
AL528_RS05570	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05600	SM00354	helix_turn _helix lactose operon repressor
AL528_RS05630	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05650	SM00852	Probable molybdopterin binding domain
AL528_RS05660	SM00852	Probable molybdopterin binding domain
AL528_RS05685	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL528_RS05700	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS05750	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL528_RS05750	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL528_RS05750	SM00493	AL528_RS05750
AL528_RS05765	SM01403	AL528_RS05765
AL528_RS05785	SM01382	AL528_RS05785
AL528_RS05785	SM01383	AL528_RS05785
AL528_RS05800	SM00322	K homology RNA-binding domain
AL528_RS05820	SM01374	AL528_RS05820
AL528_RS05825	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL528_RS05880	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS05900	SM00662	RNA polymerases D
AL528_RS05910	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05915	SM00382	ATPases associated with a variety of cellular activities
AL528_RS05950	SM00829	Enoylreductase
AL528_RS05955	SM00829	Enoylreductase
AL528_RS06155	SM00382	ATPases associated with a variety of cellular activities
AL528_RS06180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS06190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS06190	SM00895	AL528_RS06190
AL528_RS06235	SM01133	AL528_RS06235
AL528_RS06240	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AL528_RS06315	SM00357	Cold shock protein domain
AL528_RS06315	SM00382	ATPases associated with a variety of cellular activities
AL528_RS06315	SM00959	Rho termination factor, N-terminal domain
AL528_RS06330	SM00937	AL528_RS06330
AL528_RS06345	SM00226	Low molecular weight phosphatase family
AL528_RS06405	SM00382	ATPases associated with a variety of cellular activities
AL528_RS06470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS06475	SM00155	Phospholipase D. Active site motifs.
AL528_RS06510	SM00487	DEAD-like helicases superfamily
AL528_RS06510	SM00490	helicase superfamily c-terminal domain
AL528_RS06535	SM01005	Alanine racemase, C-terminal domain
AL528_RS06550	SM00331	Sigma factor PP2C-like phosphatases
AL528_RS06550	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AL528_RS06570	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS06570	SM00732	Likely ribonuclease with RNase H fold.
AL528_RS06575	SM00731	SprT homologues.
AL528_RS06625	SM01329	AL528_RS06625
AL528_RS06630	SM00917	LeuA allosteric (dimerisation) domain
AL528_RS06680	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL528_RS06685	SM00382	ATPases associated with a variety of cellular activities
AL528_RS06690	SM00881	CoA binding domain
AL528_RS06705	SM00354	helix_turn _helix lactose operon repressor
AL528_RS06710	SM00640	Glycosyl hydrolases family 32
AL528_RS06720	SM00448	cheY-homologous receiver domain
AL528_RS06720	SM00850	LytTr DNA-binding domain
AL528_RS06730	SM00794	Staphylococcal AgrD protein
AL528_RS06735	SM00793	Accessory gene regulator B
AL528_RS06760	SM00883	Chaperonin 10 Kd subunit
AL528_RS06775	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS06800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS06815	SM00382	ATPases associated with a variety of cellular activities
AL528_RS06875	SM01131	AL528_RS06875
AL528_RS06885	SM00710	Parallel beta-helix repeats
AL528_RS06925	SM00998	Adenylosuccinate lyase C-terminus
AL528_RS06950	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL528_RS06950	SM00292	breast cancer carboxy-terminal domain
AL528_RS06950	SM00532	Ligase N family
AL528_RS06975	SM00845	GatB domain
AL528_RS06980	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AL528_RS07000	SM00479	AL528_RS07000
AL528_RS07055	SM00387	Histidine kinase-like ATPases
AL528_RS07060	SM00421	helix_turn_helix, Lux Regulon
AL528_RS07060	SM00448	cheY-homologous receiver domain
AL528_RS07075	SM00226	Low molecular weight phosphatase family
AL528_RS07140	SM00478	endonuclease III
AL528_RS07150	SM00382	ATPases associated with a variety of cellular activities
AL528_RS07335	SM00062	Bacterial periplasmic substrate-binding proteins
AL528_RS07335	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL528_RS07340	SM00382	ATPases associated with a variety of cellular activities
AL528_RS07345	SM00567	E-Z type HEAT repeats
AL528_RS07385	SM00421	helix_turn_helix, Lux Regulon
AL528_RS07385	SM00448	cheY-homologous receiver domain
AL528_RS07415	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS07440	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS07465	SM00382	ATPases associated with a variety of cellular activities
AL528_RS07555	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS07560	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS07745	SM00507	HNH nucleases
AL528_RS07835	SM00710	Parallel beta-helix repeats
AL528_RS07880	SM00646	AL528_RS07880
AL528_RS07900	SM01234	AL528_RS07900
AL528_RS07980	SM00047	Lysozyme subfamily 2
AL528_RS08045	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL528_RS08060	SM00450	Rhodanese Homology Domain
AL528_RS08075	SM00363	S4 RNA-binding domain
AL528_RS08105	SM00849	Metallo-beta-lactamase superfamily
AL528_RS08135	SM00843	AL528_RS08135
AL528_RS08155	SM00830	Chorismate mutase type II
AL528_RS08160	SM00354	helix_turn _helix lactose operon repressor
AL528_RS08190	SM00363	S4 RNA-binding domain
AL528_RS08195	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL528_RS08200	SM00563	Phosphate acyltransferases
AL528_RS08240	SM00363	S4 RNA-binding domain
AL528_RS08240	SM01390	AL528_RS08240
AL528_RS08250	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL528_RS08265	SM00981	AL528_RS08265
AL528_RS08310	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL528_RS08310	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL528_RS08325	SM00849	Metallo-beta-lactamase superfamily
AL528_RS08335	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL528_RS08345	SM00481	DNA polymerase alpha chain like domain
AL528_RS08350	SM00919	Malic enzyme, NAD binding domain
AL528_RS08350	SM01274	AL528_RS08350
AL528_RS08385	SM01329	AL528_RS08385
AL528_RS08390	SM00448	cheY-homologous receiver domain
AL528_RS08390	SM00862	Transcriptional regulatory protein, C terminal
AL528_RS08395	SM00387	Histidine kinase-like ATPases
AL528_RS08395	SM00388	His Kinase A (phosphoacceptor) domain
AL528_RS08400	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL528_RS08400	SM00474	3'-5' exonuclease
AL528_RS08400	SM00475	5'-3' exonuclease
AL528_RS08400	SM00482	DNA polymerase A domain
AL528_RS08405	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL528_RS08405	SM01232	AL528_RS08405
AL528_RS08415	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL528_RS08435	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL528_RS08475	SM00382	ATPases associated with a variety of cellular activities
AL528_RS08475	SM00994	ClpX C4-type zinc finger
AL528_RS08475	SM01086	C-terminal, D2-small domain, of ClpB protein
AL528_RS08505	SM01004	Delta-aminolevulinic acid dehydratase
AL528_RS08605	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL528_RS08610	SM00382	ATPases associated with a variety of cellular activities
AL528_RS08625	SM01323	AL528_RS08625
AL528_RS08645	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS08645	SM00954	Region found in RelA / SpoT proteins
AL528_RS08655	SM00287	Bacterial SH3 domain homologues
AL528_RS08655	SM00646	AL528_RS08655
AL528_RS08680	SM00382	ATPases associated with a variety of cellular activities
AL528_RS08710	SM00382	ATPases associated with a variety of cellular activities
AL528_RS08725	SM00028	Tetratricopeptide repeats
AL528_RS08730	SM00382	ATPases associated with a variety of cellular activities
AL528_RS08735	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL528_RS08745	SM00732	Likely ribonuclease with RNase H fold.
AL528_RS08780	SM00796	Allophanate hydrolase subunit 1
AL528_RS08785	SM00797	Allophanate hydrolase subunit 2
AL528_RS08795	SM00878	Biotin carboxylase C-terminal domain
AL528_RS08830	SM01103	AL528_RS08830
AL528_RS08840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS08855	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL528_RS08865	SM00849	Metallo-beta-lactamase superfamily
AL528_RS08880	SM00838	Elongation factor G C-terminus
AL528_RS08885	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL528_RS08905	SM00271	DnaJ molecular chaperone homology domain
AL528_RS08975	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL528_RS08985	SM00400	zinc finger
AL528_RS08985	SM00493	AL528_RS08985
AL528_RS09005	SM00487	DEAD-like helicases superfamily
AL528_RS09005	SM00490	helicase superfamily c-terminal domain
AL528_RS09010	SM00518	AP endonuclease family 2
AL528_RS09015	SM00382	ATPases associated with a variety of cellular activities
AL528_RS09070	SM00849	Metallo-beta-lactamase superfamily
AL528_RS09130	SM00450	Rhodanese Homology Domain
AL528_RS09155	SM00841	Elongation factor P, C-terminal
AL528_RS09155	SM01185	AL528_RS09155
AL528_RS09165	SM00878	Biotin carboxylase C-terminal domain
AL528_RS09225	SM00861	Transketolase, pyrimidine binding domain
AL528_RS09250	SM01350	AL528_RS09250
AL528_RS09255	SM00354	helix_turn _helix lactose operon repressor
AL528_RS09260	SM00642	Alpha-amylase domain
AL528_RS09265	SM00342	helix_turn_helix, arabinose operon control protein
AL528_RS09265	SM00871	Bacterial transcription activator, effector binding domain
AL528_RS09325	SM00363	S4 RNA-binding domain
AL528_RS09330	SM00448	cheY-homologous receiver domain
AL528_RS09330	SM00862	Transcriptional regulatory protein, C terminal
AL528_RS09335	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL528_RS09335	SM00387	Histidine kinase-like ATPases
AL528_RS09335	SM00388	His Kinase A (phosphoacceptor) domain
AL528_RS09355	SM00487	DEAD-like helicases superfamily
AL528_RS09355	SM00490	helicase superfamily c-terminal domain
AL528_RS09360	SM00257	Lysin motif
AL528_RS09370	SM00870	AL528_RS09370
AL528_RS09380	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS09395	SM00411	bacterial (prokaryotic) histone like domain
AL528_RS09415	SM00562	AL528_RS09415
AL528_RS09435	SM00028	Tetratricopeptide repeats
AL528_RS09440	SM00914	AL528_RS09440
AL528_RS09475	SM00479	AL528_RS09475
AL528_RS09475	SM00491	AL528_RS09475
AL528_RS09490	SM00478	endonuclease III
AL528_RS09530	SM00981	AL528_RS09530
AL528_RS09545	SM00644	AL528_RS09545
AL528_RS09555	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL528_RS09555	SM00475	5'-3' exonuclease
AL528_RS09580	SM00932	Scaffold protein Nfu/NifU N terminal
AL528_RS09585	SM00567	E-Z type HEAT repeats
AL528_RS09585	SM00932	Scaffold protein Nfu/NifU N terminal
AL528_RS09630	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL528_RS09630	SM00245	tail specific protease
AL528_RS09645	SM00014	Acid phosphatase homologues
AL528_RS09650	SM00448	cheY-homologous receiver domain
AL528_RS09650	SM00862	Transcriptional regulatory protein, C terminal
AL528_RS09655	SM00387	Histidine kinase-like ATPases
AL528_RS09655	SM00388	His Kinase A (phosphoacceptor) domain
AL528_RS09660	SM00861	Transketolase, pyrimidine binding domain
AL528_RS09675	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS09715	SM00382	ATPases associated with a variety of cellular activities
AL528_RS09740	SM00382	ATPases associated with a variety of cellular activities
AL528_RS09745	SM00327	von Willebrand factor (vWF) type A domain
AL528_RS09780	SM00357	Cold shock protein domain
AL528_RS09790	SM01005	Alanine racemase, C-terminal domain
AL528_RS09810	SM01130	AL528_RS09810
AL528_RS09815	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL528_RS09830	SM00382	ATPases associated with a variety of cellular activities
AL528_RS09855	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10000	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10010	SM00354	helix_turn _helix lactose operon repressor
AL528_RS10035	SM01061	CAT RNA binding domain
AL528_RS10045	SM00434	DNA Topoisomerase IV
AL528_RS10050	SM00387	Histidine kinase-like ATPases
AL528_RS10050	SM00433	TopoisomeraseII
AL528_RS10055	SM01207	AL528_RS10055
AL528_RS10115	SM00861	Transketolase, pyrimidine binding domain
AL528_RS10140	SM01240	AL528_RS10140
AL528_RS10155	SM01060	AL528_RS10155
AL528_RS10210	SM00318	Staphylococcal nuclease homologues
AL528_RS10220	SM00421	helix_turn_helix, Lux Regulon
AL528_RS10220	SM00448	cheY-homologous receiver domain
AL528_RS10225	SM00387	Histidine kinase-like ATPases
AL528_RS10235	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10245	SM01230	AL528_RS10245
AL528_RS10250	SM00422	helix_turn_helix, mercury resistance
AL528_RS10310	SM00853	MutL C terminal dimerisation domain
AL528_RS10310	SM01340	AL528_RS10310
AL528_RS10315	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL528_RS10315	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL528_RS10330	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL528_RS10375	SM00322	K homology RNA-binding domain
AL528_RS10375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL528_RS10380	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10385	SM00852	Probable molybdopterin binding domain
AL528_RS10420	SM00866	AL528_RS10420
AL528_RS10425	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10425	SM00843	AL528_RS10425
AL528_RS10430	SM00849	Metallo-beta-lactamase superfamily
AL528_RS10435	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS10435	SM00322	K homology RNA-binding domain
AL528_RS10440	SM01387	AL528_RS10440
AL528_RS10445	SM00904	Riboflavin kinase
AL528_RS10485	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS10485	SM00322	K homology RNA-binding domain
AL528_RS10495	SM00479	AL528_RS10495
AL528_RS10495	SM00481	DNA polymerase alpha chain like domain
AL528_RS10505	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL528_RS10545	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10545	SM01086	C-terminal, D2-small domain, of ClpB protein
AL528_RS10565	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL528_RS10565	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL528_RS10565	SM00493	AL528_RS10565
AL528_RS10575	SM00881	CoA binding domain
AL528_RS10635	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10635	SM00962	SRP54-type protein, GTPase domain
AL528_RS10635	SM00963	SRP54-type protein, helical bundle domain
AL528_RS10645	SM00382	ATPases associated with a variety of cellular activities
AL528_RS10645	SM00962	SRP54-type protein, GTPase domain
AL528_RS10645	SM00963	SRP54-type protein, helical bundle domain
AL528_RS10650	SM00968	SMC proteins Flexible Hinge Domain
AL528_RS10655	SM00358	Double-stranded RNA binding motif
AL528_RS10655	SM00535	Ribonuclease III family
AL528_RS10665	SM00822	AL528_RS10665
AL528_RS10670	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AL528_RS10690	SM00487	DEAD-like helicases superfamily
AL528_RS10690	SM00490	helicase superfamily c-terminal domain
AL528_RS10705	SM01120	AL528_RS10705
AL528_RS10705	SM01121	AL528_RS10705
AL528_RS10720	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
AL528_RS10735	SM00220	Serine/Threonine protein kinases, catalytic domain
AL528_RS10735	SM00740	AL528_RS10735
AL528_RS10740	SM00331	Sigma factor PP2C-like phosphatases
AL528_RS10740	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AL528_RS10775	SM00487	DEAD-like helicases superfamily
AL528_RS10775	SM00490	helicase superfamily c-terminal domain
AL528_RS10785	SM01409	AL528_RS10785
AL528_RS10790	SM00072	Guanylate kinase homologues.
AL528_RS10820	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL528_RS10825	SM00851	MGS-like domain
AL528_RS10825	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL528_RS10825	SM01209	AL528_RS10825
AL528_RS10830	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AL528_RS10855	SM00363	S4 RNA-binding domain
AL528_RS10880	SM00363	S4 RNA-binding domain
AL528_RS10905	SM00864	Tubulin/FtsZ family, GTPase domain
AL528_RS10905	SM00865	Tubulin/FtsZ family, C-terminal domain
AL528_RS10910	SM00842	Cell division protein FtsA
AL528_RS10930	SM00740	AL528_RS10930
AL528_RS10995	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS11040	SM00644	AL528_RS11040
AL528_RS11060	SM00047	Lysozyme subfamily 2
AL528_RS11130	SM00959	Rho termination factor, N-terminal domain
AL528_RS11245	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS11250	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS11255	SM00513	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
AL528_RS11305	SM00465	GIY-YIG type nucleases (URI domain)
AL528_RS11315	SM00463	Small MutS-related domain
AL528_RS11315	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL528_RS11315	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL528_RS11320	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL528_RS11320	SM00481	DNA polymerase alpha chain like domain
AL528_RS11320	SM00483	DNA polymerase X family
AL528_RS11340	SM00873	B3/4 domain
AL528_RS11340	SM00874	tRNA synthetase B5 domain
AL528_RS11340	SM00896	Ferredoxin-fold anticodon binding domain
AL528_RS11350	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL528_RS11435	SM00878	Biotin carboxylase C-terminal domain
AL528_RS11460	SM00838	Elongation factor G C-terminus
AL528_RS11510	SM00382	ATPases associated with a variety of cellular activities
AL528_RS11515	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS11535	SM00861	Transketolase, pyrimidine binding domain
AL528_RS11565	SM00849	Metallo-beta-lactamase superfamily
AL528_RS11625	SM00382	ATPases associated with a variety of cellular activities
AL528_RS11635	SM01209	AL528_RS11635
AL528_RS11635	SM01210	AL528_RS11635
AL528_RS11640	SM00798	AICARFT/IMPCHase bienzyme
AL528_RS11640	SM00851	MGS-like domain
AL528_RS11665	SM01211	AL528_RS11665
AL528_RS11685	SM01001	AIR carboxylase
AL528_RS11755	SM00047	Lysozyme subfamily 2
AL528_RS11755	SM00644	AL528_RS11755
AL528_RS11760	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS11775	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS11835	SM00914	AL528_RS11835
AL528_RS11865	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL528_RS11930	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL528_RS11930	SM00924	MgtE intracellular N domain
AL528_RS11945	SM00954	Region found in RelA / SpoT proteins
AL528_RS11955	SM01118	AL528_RS11955
AL528_RS12005	SM00382	ATPases associated with a variety of cellular activities
AL528_RS12010	SM00382	ATPases associated with a variety of cellular activities
AL528_RS12035	SM00825	Beta-ketoacyl synthase
AL528_RS12050	SM00382	ATPases associated with a variety of cellular activities
AL528_RS12050	SM01086	C-terminal, D2-small domain, of ClpB protein
AL528_RS12135	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL528_RS12150	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS12160	SM01298	AL528_RS12160
AL528_RS12300	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL528_RS12355	SM00382	ATPases associated with a variety of cellular activities
AL528_RS12385	SM00382	ATPases associated with a variety of cellular activities
AL528_RS12385	SM00930	AL528_RS12385
AL528_RS12395	SM00493	AL528_RS12395
AL528_RS12610	SM00316	Ribosomal protein S1-like RNA-binding domain
AL528_RS12610	SM00357	Cold shock protein domain
AL528_RS12610	SM00955	AL528_RS12610
AL528_RS12635	SM01192	AL528_RS12635
AL528_RS12635	SM01193	AL528_RS12635
AL528_RS12655	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL528_RS12730	SM00028	Tetratricopeptide repeats
AL528_RS12755	SM00487	DEAD-like helicases superfamily
AL528_RS12755	SM00490	helicase superfamily c-terminal domain
AL528_RS12770	SM00257	Lysin motif
AL528_RS12780	SM00957	SecA DEAD-like domain
AL528_RS12780	SM00958	SecA preprotein cross-linking domain
AL528_RS12795	SM00487	DEAD-like helicases superfamily
AL528_RS12795	SM00490	helicase superfamily c-terminal domain
AL528_RS12815	SM00267	diguanylate cyclase
AL528_RS12840	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS12850	SM00829	Enoylreductase
AL528_RS12885	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL528_RS12890	SM00829	Enoylreductase
AL528_RS12895	SM00226	Low molecular weight phosphatase family
AL528_RS12900	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL528_RS12925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL528_RS12935	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL528_RS12960	SM00857	Resolvase, N terminal domain
AL528_RS12995	SM00047	Lysozyme subfamily 2
AL528_RS13055	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS13060	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL528_RS13085	SM00974	AL528_RS13085
AL528_RS13090	SM00487	DEAD-like helicases superfamily
AL528_RS13100	SM00530	Helix-turn-helix XRE-family like proteins 
AL528_RS13110	SM00857	Resolvase, N terminal domain
AL528_RS13120	SM00091	PAS domain
AL528_RS13120	SM00382	ATPases associated with a variety of cellular activities
