SSP_RS00005 SM00382 ATPases associated with a variety of cellular activities SSP_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SSP_RS00010 SM00480 DNA polymerase III beta subunit SSP_RS00025 SM00387 Histidine kinase-like ATPases SSP_RS00025 SM00433 TopoisomeraseII SSP_RS00030 SM00434 DNA Topoisomerase IV SSP_RS00070 SM00267 diguanylate cyclase SSP_RS00085 SM00788 Adenylosuccinate synthetase SSP_RS00105 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS00115 SM00448 cheY-homologous receiver domain SSP_RS00115 SM00862 Transcriptional regulatory protein, C terminal SSP_RS00120 SM00091 PAS domain SSP_RS00120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSP_RS00120 SM00387 Histidine kinase-like ATPases SSP_RS00120 SM00388 His Kinase A (phosphoacceptor) domain SSP_RS00135 SM00849 Metallo-beta-lactamase superfamily SSP_RS00185 SM00857 Resolvase, N terminal domain SSP_RS00190 SM00857 Resolvase, N terminal domain SSP_RS00240 SM00857 Resolvase, N terminal domain SSP_RS00275 SM00487 DEAD-like helicases superfamily SSP_RS00370 SM00507 HNH nucleases SSP_RS00450 SM00382 ATPases associated with a variety of cellular activities SSP_RS00505 SM00849 Metallo-beta-lactamase superfamily SSP_RS00515 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS00525 SM01038 Beta galactosidase small chain SSP_RS00560 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS00625 SM00450 Rhodanese Homology Domain SSP_RS00655 SM00382 ATPases associated with a variety of cellular activities SSP_RS00675 SM00382 ATPases associated with a variety of cellular activities SSP_RS00685 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS00725 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS00840 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS00860 SM01001 AIR carboxylase SSP_RS00905 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS00915 SM00155 Phospholipase D. Active site motifs. SSP_RS00920 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS01025 SM00854 Bacterial capsule synthesis protein PGA_cap SSP_RS01055 SM00382 ATPases associated with a variety of cellular activities SSP_RS01075 SM00859 Semialdehyde dehydrogenase, NAD binding domain SSP_RS01150 SM00849 Metallo-beta-lactamase superfamily SSP_RS01155 SM00829 Enoylreductase SSP_RS01180 SM00062 Bacterial periplasmic substrate-binding proteins SSP_RS01180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSP_RS01190 SM00382 ATPases associated with a variety of cellular activities SSP_RS01275 SM00988 UreE urease accessory protein, N-terminal domain SSP_RS01315 SM00382 ATPases associated with a variety of cellular activities SSP_RS01320 SM00382 ATPases associated with a variety of cellular activities SSP_RS01330 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS01405 SM00478 endonuclease III SSP_RS01455 SM00382 ATPases associated with a variety of cellular activities SSP_RS01490 SM01266 SSP_RS01490 SSP_RS01530 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS01675 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS01700 SM00854 Bacterial capsule synthesis protein PGA_cap SSP_RS01745 SM00382 ATPases associated with a variety of cellular activities SSP_RS01755 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS01760 SM00354 helix_turn _helix lactose operon repressor SSP_RS01785 SM00829 Enoylreductase SSP_RS01830 SM01130 SSP_RS01830 SSP_RS01865 SM01061 CAT RNA binding domain SSP_RS01880 SM00382 ATPases associated with a variety of cellular activities SSP_RS01885 SM00382 ATPases associated with a variety of cellular activities SSP_RS01905 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS01990 SM00954 Region found in RelA / SpoT proteins SSP_RS02000 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS02000 SM00895 SSP_RS02000 SSP_RS02155 SM00382 ATPases associated with a variety of cellular activities SSP_RS02200 SM00116 Domain in cystathionine beta-synthase and other proteins. SSP_RS02200 SM00382 ATPases associated with a variety of cellular activities SSP_RS02240 SM00382 ATPases associated with a variety of cellular activities SSP_RS02260 SM00448 cheY-homologous receiver domain SSP_RS02260 SM00850 LytTr DNA-binding domain SSP_RS02265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SSP_RS02265 SM00387 Histidine kinase-like ATPases SSP_RS02330 SM00871 Bacterial transcription activator, effector binding domain SSP_RS02355 SM00855 Phosphoglycerate mutase family SSP_RS02370 SM01022 SSP_RS02370 SSP_RS02395 SM00867 YceI-like domain SSP_RS02460 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS02480 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS02485 SM00644 SSP_RS02485 SSP_RS02535 SM00420 helix_turn_helix, Deoxyribose operon repressor SSP_RS02535 SM01134 SSP_RS02535 SSP_RS02540 SM00829 Enoylreductase SSP_RS02550 SM01120 SSP_RS02550 SSP_RS02585 SM00829 Enoylreductase SSP_RS02620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSP_RS02620 SM00387 Histidine kinase-like ATPases SSP_RS02620 SM00388 His Kinase A (phosphoacceptor) domain SSP_RS02625 SM00448 cheY-homologous receiver domain SSP_RS02625 SM00862 Transcriptional regulatory protein, C terminal SSP_RS02635 SM00382 ATPases associated with a variety of cellular activities SSP_RS02645 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS02740 SM00382 ATPases associated with a variety of cellular activities SSP_RS02805 SM00903 Flavin reductase like domain SSP_RS02880 SM00098 Alkaline phosphatase homologues SSP_RS02910 SM00420 helix_turn_helix, Deoxyribose operon repressor SSP_RS02925 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SSP_RS02925 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SSP_RS02940 SM00047 Lysozyme subfamily 2 SSP_RS03020 SM00062 Bacterial periplasmic substrate-binding proteins SSP_RS03025 SM00382 ATPases associated with a variety of cellular activities SSP_RS03055 SM00354 helix_turn _helix lactose operon repressor SSP_RS03085 SM00382 ATPases associated with a variety of cellular activities SSP_RS03105 SM00852 Probable molybdopterin binding domain SSP_RS03115 SM00852 Probable molybdopterin binding domain SSP_RS03140 SM00729 Elongator protein 3, MiaB family, Radical SAM SSP_RS03155 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS03205 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SSP_RS03205 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SSP_RS03205 SM00493 SSP_RS03205 SSP_RS03220 SM01403 SSP_RS03220 SSP_RS03240 SM01382 SSP_RS03240 SSP_RS03240 SM01383 SSP_RS03240 SSP_RS03255 SM00322 K homology RNA-binding domain SSP_RS03275 SM01374 SSP_RS03275 SSP_RS03280 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSP_RS03335 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS03355 SM00662 RNA polymerases D SSP_RS03365 SM00382 ATPases associated with a variety of cellular activities SSP_RS03370 SM00382 ATPases associated with a variety of cellular activities SSP_RS03405 SM00829 Enoylreductase SSP_RS03410 SM00829 Enoylreductase SSP_RS03610 SM00382 ATPases associated with a variety of cellular activities SSP_RS03635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSP_RS03645 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS03645 SM00895 SSP_RS03645 SSP_RS03690 SM01133 SSP_RS03690 SSP_RS03695 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SSP_RS03770 SM00357 Cold shock protein domain SSP_RS03770 SM00382 ATPases associated with a variety of cellular activities SSP_RS03770 SM00959 Rho termination factor, N-terminal domain SSP_RS03785 SM00937 SSP_RS03785 SSP_RS03800 SM00226 Low molecular weight phosphatase family SSP_RS03860 SM00382 ATPases associated with a variety of cellular activities SSP_RS03925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS03930 SM00155 Phospholipase D. Active site motifs. SSP_RS03960 SM00487 DEAD-like helicases superfamily SSP_RS03960 SM00490 helicase superfamily c-terminal domain SSP_RS03985 SM01005 Alanine racemase, C-terminal domain SSP_RS04000 SM00331 Sigma factor PP2C-like phosphatases SSP_RS04000 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SSP_RS04025 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS04025 SM00732 Likely ribonuclease with RNase H fold. SSP_RS04030 SM00731 SprT homologues. SSP_RS04080 SM01329 SSP_RS04080 SSP_RS04085 SM00917 LeuA allosteric (dimerisation) domain SSP_RS04135 SM00534 ATPase domain of DNA mismatch repair MUTS family SSP_RS04140 SM00382 ATPases associated with a variety of cellular activities SSP_RS04145 SM00881 CoA binding domain SSP_RS04160 SM00354 helix_turn _helix lactose operon repressor SSP_RS04165 SM00640 Glycosyl hydrolases family 32 SSP_RS04175 SM00448 cheY-homologous receiver domain SSP_RS04175 SM00850 LytTr DNA-binding domain SSP_RS04185 SM00794 Staphylococcal AgrD protein SSP_RS04190 SM00793 Accessory gene regulator B SSP_RS04215 SM00883 Chaperonin 10 Kd subunit SSP_RS04230 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS04255 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS04260 SM00382 ATPases associated with a variety of cellular activities SSP_RS04275 SM00382 ATPases associated with a variety of cellular activities SSP_RS04325 SM01131 SSP_RS04325 SSP_RS04335 SM00710 Parallel beta-helix repeats SSP_RS04375 SM00998 Adenylosuccinate lyase C-terminus SSP_RS04400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSP_RS04400 SM00292 breast cancer carboxy-terminal domain SSP_RS04400 SM00532 Ligase N family SSP_RS04425 SM00845 GatB domain SSP_RS04430 SM00046 Diacylglycerol kinase catalytic domain (presumed) SSP_RS04450 SM00479 SSP_RS04450 SSP_RS04505 SM00387 Histidine kinase-like ATPases SSP_RS04510 SM00421 helix_turn_helix, Lux Regulon SSP_RS04510 SM00448 cheY-homologous receiver domain SSP_RS04525 SM00226 Low molecular weight phosphatase family SSP_RS04585 SM00478 endonuclease III SSP_RS04595 SM00382 ATPases associated with a variety of cellular activities SSP_RS04785 SM00382 ATPases associated with a variety of cellular activities SSP_RS04790 SM00567 E-Z type HEAT repeats SSP_RS04830 SM00421 helix_turn_helix, Lux Regulon SSP_RS04830 SM00448 cheY-homologous receiver domain SSP_RS04855 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS04880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS04905 SM00382 ATPases associated with a variety of cellular activities SSP_RS05000 SM01234 SSP_RS05000 SSP_RS05085 SM00047 Lysozyme subfamily 2 SSP_RS05155 SM00729 Elongator protein 3, MiaB family, Radical SAM SSP_RS05170 SM00450 Rhodanese Homology Domain SSP_RS05185 SM00363 S4 RNA-binding domain SSP_RS05215 SM00849 Metallo-beta-lactamase superfamily SSP_RS05245 SM00843 SSP_RS05245 SSP_RS05265 SM00830 Chorismate mutase type II SSP_RS05270 SM00354 helix_turn _helix lactose operon repressor SSP_RS05300 SM00363 S4 RNA-binding domain SSP_RS05305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSP_RS05310 SM00563 Phosphate acyltransferases SSP_RS05350 SM00363 S4 RNA-binding domain SSP_RS05350 SM01390 SSP_RS05350 SSP_RS05355 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SSP_RS05370 SM00981 SSP_RS05370 SSP_RS05415 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SSP_RS05415 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SSP_RS05430 SM00849 Metallo-beta-lactamase superfamily SSP_RS05440 SM00116 Domain in cystathionine beta-synthase and other proteins. SSP_RS05450 SM00481 DNA polymerase alpha chain like domain SSP_RS05455 SM00919 Malic enzyme, NAD binding domain SSP_RS05455 SM01274 SSP_RS05455 SSP_RS05490 SM01329 SSP_RS05490 SSP_RS05495 SM00448 cheY-homologous receiver domain SSP_RS05495 SM00862 Transcriptional regulatory protein, C terminal SSP_RS05500 SM00387 Histidine kinase-like ATPases SSP_RS05500 SM00388 His Kinase A (phosphoacceptor) domain SSP_RS05505 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SSP_RS05505 SM00474 3'-5' exonuclease SSP_RS05505 SM00475 5'-3' exonuclease SSP_RS05505 SM00482 DNA polymerase A domain SSP_RS05510 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SSP_RS05510 SM01232 SSP_RS05510 SSP_RS05520 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSP_RS05540 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSP_RS05580 SM00382 ATPases associated with a variety of cellular activities SSP_RS05580 SM00994 ClpX C4-type zinc finger SSP_RS05580 SM01086 C-terminal, D2-small domain, of ClpB protein SSP_RS05610 SM01004 Delta-aminolevulinic acid dehydratase SSP_RS05705 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSP_RS05710 SM00382 ATPases associated with a variety of cellular activities SSP_RS05725 SM01323 SSP_RS05725 SSP_RS05745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS05745 SM00954 Region found in RelA / SpoT proteins SSP_RS05755 SM00287 Bacterial SH3 domain homologues SSP_RS05755 SM00646 SSP_RS05755 SSP_RS05775 SM00382 ATPases associated with a variety of cellular activities SSP_RS05800 SM00382 ATPases associated with a variety of cellular activities SSP_RS05815 SM00028 Tetratricopeptide repeats SSP_RS05820 SM00382 ATPases associated with a variety of cellular activities SSP_RS05825 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSP_RS05835 SM00732 Likely ribonuclease with RNase H fold. SSP_RS05870 SM00796 Allophanate hydrolase subunit 1 SSP_RS05875 SM00797 Allophanate hydrolase subunit 2 SSP_RS05885 SM00878 Biotin carboxylase C-terminal domain SSP_RS05920 SM01103 SSP_RS05920 SSP_RS05930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS05945 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSP_RS05955 SM00849 Metallo-beta-lactamase superfamily SSP_RS05970 SM00838 Elongation factor G C-terminus SSP_RS05975 SM00729 Elongator protein 3, MiaB family, Radical SAM SSP_RS05995 SM00271 DnaJ molecular chaperone homology domain SSP_RS06065 SM00116 Domain in cystathionine beta-synthase and other proteins. SSP_RS06075 SM00400 zinc finger SSP_RS06075 SM00493 SSP_RS06075 SSP_RS06095 SM00487 DEAD-like helicases superfamily SSP_RS06095 SM00490 helicase superfamily c-terminal domain SSP_RS06100 SM00518 AP endonuclease family 2 SSP_RS06105 SM00382 ATPases associated with a variety of cellular activities SSP_RS06140 SM00028 Tetratricopeptide repeats SSP_RS06160 SM00849 Metallo-beta-lactamase superfamily SSP_RS06220 SM00450 Rhodanese Homology Domain SSP_RS06245 SM00841 Elongation factor P, C-terminal SSP_RS06245 SM01185 SSP_RS06245 SSP_RS06255 SM00878 Biotin carboxylase C-terminal domain SSP_RS06310 SM00861 Transketolase, pyrimidine binding domain SSP_RS06335 SM01350 SSP_RS06335 SSP_RS06340 SM00354 helix_turn _helix lactose operon repressor SSP_RS06345 SM00642 Alpha-amylase domain SSP_RS06350 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS06350 SM00871 Bacterial transcription activator, effector binding domain SSP_RS06410 SM00363 S4 RNA-binding domain SSP_RS06415 SM00448 cheY-homologous receiver domain SSP_RS06415 SM00862 Transcriptional regulatory protein, C terminal SSP_RS06420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSP_RS06420 SM00387 Histidine kinase-like ATPases SSP_RS06420 SM00388 His Kinase A (phosphoacceptor) domain SSP_RS06440 SM00487 DEAD-like helicases superfamily SSP_RS06440 SM00490 helicase superfamily c-terminal domain SSP_RS06445 SM00257 Lysin motif SSP_RS06455 SM00870 SSP_RS06455 SSP_RS06465 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS06480 SM00411 bacterial (prokaryotic) histone like domain SSP_RS06500 SM00562 SSP_RS06500 SSP_RS06520 SM00028 Tetratricopeptide repeats SSP_RS06525 SM00914 SSP_RS06525 SSP_RS06560 SM00479 SSP_RS06560 SSP_RS06560 SM00491 SSP_RS06560 SSP_RS06575 SM00478 endonuclease III SSP_RS06610 SM00981 SSP_RS06610 SSP_RS06625 SM00644 SSP_RS06625 SSP_RS06635 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SSP_RS06635 SM00475 5'-3' exonuclease SSP_RS06660 SM00932 Scaffold protein Nfu/NifU N terminal SSP_RS06665 SM00567 E-Z type HEAT repeats SSP_RS06665 SM00932 Scaffold protein Nfu/NifU N terminal SSP_RS06710 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSP_RS06710 SM00245 tail specific protease SSP_RS06725 SM00014 Acid phosphatase homologues SSP_RS06730 SM00448 cheY-homologous receiver domain SSP_RS06730 SM00862 Transcriptional regulatory protein, C terminal SSP_RS06735 SM00387 Histidine kinase-like ATPases SSP_RS06735 SM00388 His Kinase A (phosphoacceptor) domain SSP_RS06740 SM00861 Transketolase, pyrimidine binding domain SSP_RS06755 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS06795 SM00382 ATPases associated with a variety of cellular activities SSP_RS06820 SM00382 ATPases associated with a variety of cellular activities SSP_RS06825 SM00327 von Willebrand factor (vWF) type A domain SSP_RS06860 SM00357 Cold shock protein domain SSP_RS06870 SM01005 Alanine racemase, C-terminal domain SSP_RS06890 SM01130 SSP_RS06890 SSP_RS06895 SM00859 Semialdehyde dehydrogenase, NAD binding domain SSP_RS06910 SM00382 ATPases associated with a variety of cellular activities SSP_RS06935 SM00382 ATPases associated with a variety of cellular activities SSP_RS07075 SM00382 ATPases associated with a variety of cellular activities SSP_RS07085 SM00354 helix_turn _helix lactose operon repressor SSP_RS07110 SM01061 CAT RNA binding domain SSP_RS07120 SM00434 DNA Topoisomerase IV SSP_RS07125 SM00387 Histidine kinase-like ATPases SSP_RS07125 SM00433 TopoisomeraseII SSP_RS07130 SM01207 SSP_RS07130 SSP_RS07185 SM00861 Transketolase, pyrimidine binding domain SSP_RS07210 SM01240 SSP_RS07210 SSP_RS07240 SM00382 ATPases associated with a variety of cellular activities SSP_RS07245 SM00062 Bacterial periplasmic substrate-binding proteins SSP_RS07270 SM01060 SSP_RS07270 SSP_RS07325 SM00318 Staphylococcal nuclease homologues SSP_RS07335 SM00421 helix_turn_helix, Lux Regulon SSP_RS07335 SM00448 cheY-homologous receiver domain SSP_RS07340 SM00387 Histidine kinase-like ATPases SSP_RS07350 SM00382 ATPases associated with a variety of cellular activities SSP_RS07360 SM01230 SSP_RS07360 SSP_RS07365 SM00422 helix_turn_helix, mercury resistance SSP_RS07430 SM00853 MutL C terminal dimerisation domain SSP_RS07430 SM01340 SSP_RS07430 SSP_RS07435 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSP_RS07435 SM00534 ATPase domain of DNA mismatch repair MUTS family SSP_RS07450 SM00729 Elongator protein 3, MiaB family, Radical SAM SSP_RS07495 SM00322 K homology RNA-binding domain SSP_RS07495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS07500 SM00382 ATPases associated with a variety of cellular activities SSP_RS07505 SM00852 Probable molybdopterin binding domain SSP_RS07545 SM00866 SSP_RS07545 SSP_RS07550 SM00382 ATPases associated with a variety of cellular activities SSP_RS07550 SM00843 SSP_RS07550 SSP_RS07555 SM00849 Metallo-beta-lactamase superfamily SSP_RS07560 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS07560 SM00322 K homology RNA-binding domain SSP_RS07565 SM01387 SSP_RS07565 SSP_RS07570 SM00904 Riboflavin kinase SSP_RS07610 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS07610 SM00322 K homology RNA-binding domain SSP_RS07620 SM00479 SSP_RS07620 SSP_RS07620 SM00481 DNA polymerase alpha chain like domain SSP_RS07630 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSP_RS07670 SM00382 ATPases associated with a variety of cellular activities SSP_RS07670 SM01086 C-terminal, D2-small domain, of ClpB protein SSP_RS07690 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SSP_RS07690 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SSP_RS07690 SM00493 SSP_RS07690 SSP_RS07700 SM00881 CoA binding domain SSP_RS07760 SM00382 ATPases associated with a variety of cellular activities SSP_RS07760 SM00962 SRP54-type protein, GTPase domain SSP_RS07760 SM00963 SRP54-type protein, helical bundle domain SSP_RS07770 SM00382 ATPases associated with a variety of cellular activities SSP_RS07770 SM00962 SRP54-type protein, GTPase domain SSP_RS07770 SM00963 SRP54-type protein, helical bundle domain SSP_RS07775 SM00968 SMC proteins Flexible Hinge Domain SSP_RS07780 SM00358 Double-stranded RNA binding motif SSP_RS07780 SM00535 Ribonuclease III family SSP_RS07790 SM00822 SSP_RS07790 SSP_RS07795 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SSP_RS07815 SM00487 DEAD-like helicases superfamily SSP_RS07815 SM00490 helicase superfamily c-terminal domain SSP_RS07830 SM01120 SSP_RS07830 SSP_RS07830 SM01121 SSP_RS07830 SSP_RS07845 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SSP_RS07860 SM00220 Serine/Threonine protein kinases, catalytic domain SSP_RS07860 SM00740 SSP_RS07860 SSP_RS07865 SM00331 Sigma factor PP2C-like phosphatases SSP_RS07865 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SSP_RS07895 SM00487 DEAD-like helicases superfamily SSP_RS07895 SM00490 helicase superfamily c-terminal domain SSP_RS07905 SM01409 SSP_RS07905 SSP_RS07910 SM00072 Guanylate kinase homologues. SSP_RS07940 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSP_RS07945 SM00851 MGS-like domain SSP_RS07945 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SSP_RS07945 SM01209 SSP_RS07945 SSP_RS07950 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SSP_RS07975 SM00363 S4 RNA-binding domain SSP_RS08000 SM00363 S4 RNA-binding domain SSP_RS08025 SM00864 Tubulin/FtsZ family, GTPase domain SSP_RS08025 SM00865 Tubulin/FtsZ family, C-terminal domain SSP_RS08030 SM00842 Cell division protein FtsA SSP_RS08050 SM00740 SSP_RS08050 SSP_RS08115 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSP_RS08165 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSP_RS08175 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS08195 SM00382 ATPases associated with a variety of cellular activities SSP_RS08205 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSP_RS08230 SM00226 Low molecular weight phosphatase family SSP_RS08235 SM00829 Enoylreductase SSP_RS08240 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS08310 SM00465 GIY-YIG type nucleases (URI domain) SSP_RS08320 SM00463 Small MutS-related domain SSP_RS08320 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSP_RS08320 SM00534 ATPase domain of DNA mismatch repair MUTS family SSP_RS08325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSP_RS08325 SM00481 DNA polymerase alpha chain like domain SSP_RS08325 SM00483 DNA polymerase X family SSP_RS08345 SM00873 B3/4 domain SSP_RS08345 SM00874 tRNA synthetase B5 domain SSP_RS08345 SM00896 Ferredoxin-fold anticodon binding domain SSP_RS08355 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSP_RS08435 SM00878 Biotin carboxylase C-terminal domain SSP_RS08455 SM00838 Elongation factor G C-terminus SSP_RS08505 SM00382 ATPases associated with a variety of cellular activities SSP_RS08510 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS08530 SM00861 Transketolase, pyrimidine binding domain SSP_RS08560 SM00849 Metallo-beta-lactamase superfamily SSP_RS08620 SM00382 ATPases associated with a variety of cellular activities SSP_RS08630 SM01209 SSP_RS08630 SSP_RS08630 SM01210 SSP_RS08630 SSP_RS08635 SM00798 AICARFT/IMPCHase bienzyme SSP_RS08635 SM00851 MGS-like domain SSP_RS08660 SM01211 SSP_RS08660 SSP_RS08680 SM01001 AIR carboxylase SSP_RS08750 SM00047 Lysozyme subfamily 2 SSP_RS08750 SM00644 SSP_RS08750 SSP_RS08755 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS08770 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS08830 SM00914 SSP_RS08830 SSP_RS08860 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSP_RS08925 SM00116 Domain in cystathionine beta-synthase and other proteins. SSP_RS08925 SM00924 MgtE intracellular N domain SSP_RS08940 SM00954 Region found in RelA / SpoT proteins SSP_RS08950 SM01118 SSP_RS08950 SSP_RS09000 SM00382 ATPases associated with a variety of cellular activities SSP_RS09005 SM00382 ATPases associated with a variety of cellular activities SSP_RS09030 SM00825 Beta-ketoacyl synthase SSP_RS09045 SM00382 ATPases associated with a variety of cellular activities SSP_RS09045 SM01086 C-terminal, D2-small domain, of ClpB protein SSP_RS09130 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSP_RS09145 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS09155 SM01298 SSP_RS09155 SSP_RS09295 SM00729 Elongator protein 3, MiaB family, Radical SAM SSP_RS09345 SM00382 ATPases associated with a variety of cellular activities SSP_RS09375 SM00382 ATPases associated with a variety of cellular activities SSP_RS09375 SM00930 SSP_RS09375 SSP_RS09385 SM00493 SSP_RS09385 SSP_RS09550 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS09550 SM00357 Cold shock protein domain SSP_RS09550 SM00955 SSP_RS09550 SSP_RS09575 SM01192 SSP_RS09575 SSP_RS09575 SM01193 SSP_RS09575 SSP_RS09595 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSP_RS09720 SM00885 D5 N terminal like SSP_RS09740 SM01040 BRO family, N-terminal domain SSP_RS09745 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS09750 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS09790 SM00028 Tetratricopeptide repeats SSP_RS09815 SM00487 DEAD-like helicases superfamily SSP_RS09815 SM00490 helicase superfamily c-terminal domain SSP_RS09830 SM00257 Lysin motif SSP_RS09835 SM00937 SSP_RS09835 SSP_RS09840 SM00957 SecA DEAD-like domain SSP_RS09840 SM00958 SecA preprotein cross-linking domain SSP_RS09855 SM00487 DEAD-like helicases superfamily SSP_RS09855 SM00490 helicase superfamily c-terminal domain SSP_RS09875 SM00267 diguanylate cyclase SSP_RS09935 SM00382 ATPases associated with a variety of cellular activities SSP_RS09985 SM00046 Diacylglycerol kinase catalytic domain (presumed) SSP_RS10005 SM00382 ATPases associated with a variety of cellular activities SSP_RS10010 SM00341 Helicase and RNase D C-terminal SSP_RS10010 SM00487 DEAD-like helicases superfamily SSP_RS10010 SM00490 helicase superfamily c-terminal domain SSP_RS10010 SM00956 SSP_RS10010 SSP_RS10015 SM00382 ATPases associated with a variety of cellular activities SSP_RS10030 SM00797 Allophanate hydrolase subunit 2 SSP_RS10035 SM00796 Allophanate hydrolase subunit 1 SSP_RS10090 SM01091 Transporter associated domain SSP_RS10110 SM00420 helix_turn_helix, Deoxyribose operon repressor SSP_RS10110 SM01134 SSP_RS10110 SSP_RS10170 SM00833 Cobalamin synthesis protein cobW C-terminal domain SSP_RS10175 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS10180 SM00382 ATPases associated with a variety of cellular activities SSP_RS10185 SM00382 ATPases associated with a variety of cellular activities SSP_RS10215 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS10290 SM00342 helix_turn_helix, arabinose operon control protein SSP_RS10300 SM00257 Lysin motif SSP_RS10315 SM00387 Histidine kinase-like ATPases SSP_RS10320 SM00448 cheY-homologous receiver domain SSP_RS10320 SM00862 Transcriptional regulatory protein, C terminal SSP_RS10355 SM01120 SSP_RS10355 SSP_RS10375 SM00382 ATPases associated with a variety of cellular activities SSP_RS10390 SM00382 ATPases associated with a variety of cellular activities SSP_RS10420 SM00382 ATPases associated with a variety of cellular activities SSP_RS10435 SM00529 Helix-turn-helix diphteria tox regulatory element SSP_RS10435 SM00899 SSP_RS10435 SSP_RS10440 SM00382 ATPases associated with a variety of cellular activities SSP_RS10525 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS10565 SM00478 endonuclease III SSP_RS10570 SM00836 DALR anticodon binding domain SSP_RS10570 SM01016 Arginyl tRNA synthetase N terminal dom SSP_RS10585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSP_RS10655 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS10675 SM00986 Uracil DNA glycosylase superfamily SSP_RS10675 SM00987 UreE urease accessory protein, C-terminal domain SSP_RS10695 SM01022 SSP_RS10695 SSP_RS10705 SM00347 helix_turn_helix multiple antibiotic resistance protein SSP_RS10740 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSP_RS10865 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSP_RS10900 SM00420 helix_turn_helix, Deoxyribose operon repressor SSP_RS10900 SM01134 SSP_RS10900 SSP_RS10915 SM00354 helix_turn _helix lactose operon repressor SSP_RS10990 SM00882 Coenzyme A transferase SSP_RS10995 SM00882 Coenzyme A transferase SSP_RS11035 SM00838 Elongation factor G C-terminus SSP_RS11035 SM00889 Elongation factor G, domain IV SSP_RS11055 SM00663 RNA polymerase I subunit A N-terminus SSP_RS11085 SM00649 Ribosomal protein L11/L12 SSP_RS11090 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SSP_RS11090 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSP_RS11115 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSP_RS11125 SM00840 SSP_RS11125 SSP_RS11140 SM00670 Large family of predicted nucleotide-binding domains SSP_RS11145 SM00382 ATPases associated with a variety of cellular activities SSP_RS11150 SM00382 ATPases associated with a variety of cellular activities SSP_RS11150 SM01086 C-terminal, D2-small domain, of ClpB protein SSP_RS11185 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS11280 SM00905 Dihydroneopterin aldolase SSP_RS11300 SM00382 ATPases associated with a variety of cellular activities SSP_RS11310 SM00977 TilS substrate C-terminal domain SSP_RS11315 SM00316 Ribosomal protein S1-like RNA-binding domain SSP_RS11325 SM00363 S4 RNA-binding domain SSP_RS11340 SM00487 DEAD-like helicases superfamily SSP_RS11340 SM00490 helicase superfamily c-terminal domain SSP_RS11340 SM00982 SSP_RS11340 SSP_RS11340 SM01058 CarD-like/TRCF domain SSP_RS11355 SM01400 SSP_RS11355 SSP_RS11390 SM00650 Ribosomal RNA adenine dimethylases SSP_RS11395 SM00493 SSP_RS11395 SSP_RS11415 SM00465 GIY-YIG type nucleases (URI domain) SSP_RS11470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSP_RS11470 SM00493 SSP_RS11470 SSP_RS11480 SM00382 ATPases associated with a variety of cellular activities SSP_RS11490 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSP_RS11490 SM00866 SSP_RS11490 SSP_RS11495 SM00642 Alpha-amylase domain SSP_RS11550 SM00257 Lysin motif SSP_RS11640 SM00357 Cold shock protein domain SSP_RS11695 SM00116 Domain in cystathionine beta-synthase and other proteins. SSP_RS11695 SM01240 SSP_RS11695 SSP_RS11740 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS11765 SM00855 Phosphoglycerate mutase family SSP_RS11855 SM00344 helix_turn_helix ASNC type SSP_RS11860 SM00257 Lysin motif SSP_RS11860 SM00644 SSP_RS11860 SSP_RS11980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSP_RS12030 SM00014 Acid phosphatase homologues SSP_RS12110 SM00470 ParB-like nuclease domain SSP_RS12185 SM00882 Coenzyme A transferase SSP_RS12220 SM00899 SSP_RS12220 SSP_RS12225 SM00953 SSP_RS12225 SSP_RS12230 SM00422 helix_turn_helix, mercury resistance SSP_RS12235 SM00530 Helix-turn-helix XRE-family like proteins SSP_RS12245 SM00470 ParB-like nuclease domain SSP_RS12255 SM01228 SSP_RS12255 SSP_RS12625 SM00530 Helix-turn-helix XRE-family like proteins