locus-tag	class	description
MUA88_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
MUA88_RS00010	COG0592	DNA-directed DNA polymerase activity
MUA88_RS00015	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
MUA88_RS00025	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
MUA88_RS00030	COG0187	DNA topoisomerase II activity
MUA88_RS00040	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
MUA88_RS00055	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
MUA88_RS00065	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
MUA88_RS00070	COG4241	membrane
MUA88_RS00075	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
MUA88_RS00080	COG0359	binds to the 23S rRNA
MUA88_RS00085	COG0305	Participates in initiation and elongation during chromosome replication
MUA88_RS00090	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
MUA88_RS00095	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
MUA88_RS00120	COG0745	RESPONSE REGULATOR receiver
MUA88_RS00125	COG5002	protein histidine kinase activity
MUA88_RS00140	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
MUA88_RS00145	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
MUA88_RS00150	COG2217	Heavy metal translocating P-type atpase
MUA88_RS00155	COG1388	LysM domain
MUA88_RS00225	COG4975	Glucose uptake
MUA88_RS00240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
MUA88_RS00255	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
MUA88_RS00285	COG0747	negative chemotaxis
MUA88_RS00295	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
MUA88_RS00300	COG4172	Belongs to the ABC transporter superfamily
MUA88_RS00305	COG1124	(ABC) transporter
MUA88_RS00335	COG0659	secondary active sulfate transmembrane transporter activity
MUA88_RS00350	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
MUA88_RS00355	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
MUA88_RS00400	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
MUA88_RS00400	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
MUA88_RS00460	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
MUA88_RS00470	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
MUA88_RS00490	COG0415	Belongs to the DNA photolyase family
MUA88_RS00525	COG0577	efflux transmembrane transporter activity
MUA88_RS00535	COG2314	TM2 domain
MUA88_RS00545	COG0561	phosphatase activity
MUA88_RS00560	COG2188	Transcriptional regulator
MUA88_RS00590	COG3314	Sporulation integral membrane protein YlbJ
MUA88_RS00605	COG0477	Major facilitator Superfamily
MUA88_RS00605	COG2814	Major facilitator Superfamily
MUA88_RS00610	COG1070	Carbohydrate kinase
MUA88_RS00615	COG2115	Belongs to the xylose isomerase family
MUA88_RS00620	COG1940	carbohydrate kinase activity
MUA88_RS00620	COG1846	Transcriptional regulator
MUA88_RS00625	COG3177	Filamentation induced by cAMP protein fic
MUA88_RS00640	COG3655	Transcriptional regulator
MUA88_RS00660	COG1802	Transcriptional regulator
MUA88_RS00665	COG2084	Dehydrogenase
MUA88_RS00675	COG2610	gluconate transmembrane transporter activity
MUA88_RS00685	COG2188	Transcriptional regulator
MUA88_RS00690	COG0813	purine-nucleoside phosphorylase activity
MUA88_RS00695	COG2814	Major facilitator Superfamily
MUA88_RS00700	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
MUA88_RS00745	COG1073	alpha beta
MUA88_RS00775	COG0110	maltose O-acetyltransferase activity
MUA88_RS00780	COG0583	DNA-binding transcription factor activity
MUA88_RS00790	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
MUA88_RS00790	COG3266	domain, Protein
MUA88_RS00790	COG4932	domain protein
MUA88_RS00800	COG0579	oxidoreductase
MUA88_RS00805	COG1620	l-lactate permease
MUA88_RS00810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
MUA88_RS00810	COG1263	PTS System
MUA88_RS00815	COG0366	Alpha amylase catalytic
MUA88_RS00820	COG2188	Transcriptional regulator
MUA88_RS00835	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
MUA88_RS00840	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
MUA88_RS00845	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
MUA88_RS00865	COG1982	Orn Lys Arg decarboxylase major
MUA88_RS00870	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
MUA88_RS00875	COG3870	Protein conserved in bacteria
MUA88_RS00880	COG0470	DNA polymerase III
MUA88_RS00885	COG1774	PSP1 C-terminal conserved region
MUA88_RS00890	COG4467	Involved in initiation control of chromosome replication
MUA88_RS00895	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
MUA88_RS00900	COG2827	Endonuclease containing a URI domain
MUA88_RS00905	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
MUA88_RS00910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
MUA88_RS00910	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
MUA88_RS00915	COG0084	hydrolase, TatD family'
MUA88_RS00920	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
MUA88_RS00925	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
MUA88_RS00930	COG4466	Protein conserved in bacteria
MUA88_RS00935	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
MUA88_RS00940	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
MUA88_RS00945	COG0251	oxidation-reduction process
MUA88_RS00950	COG2088	sporulation resulting in formation of a cellular spore
MUA88_RS00955	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
MUA88_RS00960	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
MUA88_RS00970	COG0193	aminoacyl-tRNA hydrolase activity
MUA88_RS00975	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
MUA88_RS00980	COG2244	polysaccharide biosynthetic process
MUA88_RS00985	COG3956	TIGRFAM MazG family protein
MUA88_RS00990	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
MUA88_RS01000	COG1098	S1 RNA binding domain
MUA88_RS01015	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
MUA88_RS01020	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
MUA88_RS01040	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
MUA88_RS01045	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
MUA88_RS01050	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
MUA88_RS01135	COG1289	transmembrane transporter activity
MUA88_RS01140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
MUA88_RS01145	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
MUA88_RS01150	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
MUA88_RS01155	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
MUA88_RS01160	COG4463	regulation of RNA biosynthetic process
MUA88_RS01170	COG3869	Catalyzes the specific phosphorylation of arginine residues in
MUA88_RS01175	COG0542	response to heat
MUA88_RS01180	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
MUA88_RS01190	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
MUA88_RS01195	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
MUA88_RS01200	COG1045	serine acetyltransferase
MUA88_RS01205	COG0215	cysteine-tRNA ligase activity
MUA88_RS01210	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
MUA88_RS01235	COG0267	Belongs to the bacterial ribosomal protein bL33 family
MUA88_RS01240	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
MUA88_RS01245	COG0250	Participates in transcription elongation, termination and antitermination
MUA88_RS01250	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
MUA88_RS01255	COG0081	regulation of translation
MUA88_RS01260	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
MUA88_RS01270	COG2813	Specifically methylates the guanine in position
MUA88_RS01275	COG0085	RNA polymerase activity
MUA88_RS01280	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
MUA88_RS01290	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
MUA88_RS01295	COG0049	tRNA binding
MUA88_RS01300	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
MUA88_RS01305	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
MUA88_RS01315	COG1473	amidohydrolase
MUA88_RS01325	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
MUA88_RS01330	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
MUA88_RS01335	COG0546	phosphoglycolate phosphatase activity
MUA88_RS01345	COG1428	Deoxynucleoside kinase
MUA88_RS01350	COG1428	Deoxynucleoside kinase
MUA88_RS01360	COG0561	phosphatase activity
MUA88_RS01365	COG0431	NADPH-dependent FMN reductase
MUA88_RS01375	COG1469	GTP cyclohydrolase I activity
MUA88_RS01380	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
MUA88_RS01385	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
MUA88_RS01395	COG2190	(PTS) system
MUA88_RS01395	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
MUA88_RS01395	COG1263	PTS System
MUA88_RS01405	COG0363	glucosamine-6-phosphate deaminase activity
MUA88_RS01410	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
MUA88_RS01420	COG0318	PFAM AMP-dependent synthetase and ligase
MUA88_RS01425	COG0183	Belongs to the thiolase family
MUA88_RS01460	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
MUA88_RS01470	COG2363	Small membrane protein
MUA88_RS01475	COG0531	amino acid
MUA88_RS01485	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
MUA88_RS01495	COG1116	anion transmembrane transporter activity
MUA88_RS01525	COG1566	PFAM secretion protein HlyD family protein
MUA88_RS01530	COG2814	Major facilitator Superfamily
MUA88_RS01540	COG0095	Lipoate-protein ligase
MUA88_RS01545	COG0280	phosphate acetyltransferase
MUA88_RS01550	COG3253	May function as heme-dependent peroxidase
MUA88_RS01555	COG0531	amino acid
MUA88_RS01570	COG0471	metal ion transport
MUA88_RS01575	COG4844	belongs to the
MUA88_RS01580	COG0655	NAD(P)H dehydrogenase (quinone) activity
MUA88_RS01585	COG0456	acetyltransferase
MUA88_RS01585	COG1214	PFAM Peptidase M22, glycoprotease
MUA88_RS01590	COG1078	dGTPase activity
MUA88_RS01605	COG0018	arginyl-trna synthetase
MUA88_RS01610	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
MUA88_RS01615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS01625	COG0596	Alpha beta hydrolase
MUA88_RS01670	COG0582	viral genome integration into host DNA
MUA88_RS01675	COG2111	Na H antiporter
MUA88_RS01675	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
MUA88_RS01680	COG2111	Na H antiporter
MUA88_RS01685	COG1006	Multisubunit Na H antiporter MnhC subunit
MUA88_RS01690	COG0651	ATP synthesis coupled electron transport
MUA88_RS01695	COG1863	multisubunit Na H antiporter MnhE subunit
MUA88_RS01700	COG2212	antiporter activity
MUA88_RS01705	COG1320	monovalent cation:proton antiporter activity
MUA88_RS01710	COG0803	Belongs to the bacterial solute-binding protein 9 family
MUA88_RS01715	COG1108	ABC-type Mn2 Zn2 transport systems permease components
MUA88_RS01720	COG1121	(ABC) transporter
MUA88_RS01725	COG1321	iron dependent repressor
MUA88_RS01745	COG1682	transport, permease protein
MUA88_RS01750	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
MUA88_RS01755	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
MUA88_RS01760	COG1686	Belongs to the peptidase S11 family
MUA88_RS01765	COG1132	(ABC) transporter
MUA88_RS01785	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
MUA88_RS01790	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
MUA88_RS01795	COG1120	ATPase activity
MUA88_RS01800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS01805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS01815	COG0477	Major facilitator Superfamily
MUA88_RS01820	COG3949	Membrane
MUA88_RS01830	COG0745	RESPONSE REGULATOR receiver
MUA88_RS01835	COG2205	protein histidine kinase activity
MUA88_RS01840	COG1136	(ABC) transporter
MUA88_RS01845	COG0577	efflux transmembrane transporter activity
MUA88_RS01850	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS01855	COG1392	Phosphate transport regulator
MUA88_RS01860	COG0306	phosphate transporter
MUA88_RS01865	COG3942	CHAP domain
MUA88_RS01865	COG1388	LysM domain
MUA88_RS01885	COG2022	thiamine diphosphate biosynthetic process
MUA88_RS01890	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
MUA88_RS01895	COG0217	transcriptional regulatory protein
MUA88_RS01905	COG0583	DNA-binding transcription factor activity
MUA88_RS01910	COG2814	Major facilitator Superfamily
MUA88_RS01935	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
MUA88_RS01940	COG1611	Belongs to the LOG family
MUA88_RS01955	COG1968	undecaprenyl-diphosphatase activity
MUA88_RS01965	COG0523	cobalamin synthesis protein
MUA88_RS01970	COG4989	oxidoreductase activity
MUA88_RS01980	COG0039	L-malate dehydrogenase activity
MUA88_RS01985	COG1266	CAAX protease self-immunity
MUA88_RS02000	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
MUA88_RS02005	COG1349	DNA-binding transcription factor activity
MUA88_RS02010	COG1105	Belongs to the carbohydrate kinase PfkB family
MUA88_RS02015	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
MUA88_RS02015	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
MUA88_RS02015	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
MUA88_RS02020	COG1253	flavin adenine dinucleotide binding
MUA88_RS02025	COG0463	Glycosyl transferase, family 2
MUA88_RS02040	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS02065	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
MUA88_RS02070	COG1063	alcohol dehydrogenase
MUA88_RS02075	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
MUA88_RS02085	COG0602	queuosine metabolic process
MUA88_RS02090	COG0720	synthase
MUA88_RS02100	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
MUA88_RS02100	COG0512	Glutamine amidotransferase of anthranilate synthase
MUA88_RS02105	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
MUA88_RS02110	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
MUA88_RS02130	COG1368	sulfuric ester hydrolase activity
MUA88_RS02140	COG0488	(ABC) transporter
MUA88_RS02145	COG0514	ATP-dependent DNA helicase (RecQ)
MUA88_RS02150	COG0517	IMP dehydrogenase activity
MUA88_RS02150	COG1125	glycine betaine transport
MUA88_RS02155	COG1174	glycine betaine transport
MUA88_RS02160	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
MUA88_RS02170	COG3104	oligopeptide transport
MUA88_RS02175	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
MUA88_RS02190	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
MUA88_RS02195	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
MUA88_RS02205	COG0812	UDP-N-acetylmuramate dehydrogenase activity
MUA88_RS02225	COG1929	Belongs to the glycerate kinase type-1 family
MUA88_RS02230	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
MUA88_RS02255	COG2195	Cleaves the N-terminal amino acid of tripeptides
MUA88_RS02260	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS02265	COG1739	Uncharacterized protein family UPF0029
MUA88_RS02275	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
MUA88_RS02285	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
MUA88_RS02290	COG0653	protein targeting
MUA88_RS02320	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
MUA88_RS02330	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
MUA88_RS02335	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
MUA88_RS02340	COG0110	maltose O-acetyltransferase activity
MUA88_RS02350	COG0492	ferredoxin-NADP+ reductase activity
MUA88_RS02360	COG0391	Required for morphogenesis under gluconeogenic growth conditions
MUA88_RS02365	COG1481	regulation of sporulation
MUA88_RS02370	COG3759	membrane
MUA88_RS02375	COG1278	Cold shock
MUA88_RS02385	COG2514	catechol 2,3-dioxygenase activity
MUA88_RS02395	COG1090	epimerase
MUA88_RS02415	COG0126	phosphoglycerate kinase activity
MUA88_RS02425	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
MUA88_RS02440	COG3949	Membrane
MUA88_RS02450	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
MUA88_RS02455	COG1647	Serine aminopeptidase, S33
MUA88_RS02460	COG0557	exoribonuclease II activity
MUA88_RS02575	COG1764	response to oxidative stress
MUA88_RS02585	COG0710	3-dehydroquinate dehydratase activity
MUA88_RS02595	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
MUA88_RS02600	COG1393	Belongs to the ArsC family
MUA88_RS02605	COG0509	glycine decarboxylation via glycine cleavage system
MUA88_RS02615	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
MUA88_RS02620	COG2011	ABC-type metal ion transport system permease component
MUA88_RS02625	COG1464	Belongs to the NlpA lipoprotein family
MUA88_RS02635	COG1464	Belongs to the NlpA lipoprotein family
MUA88_RS02645	COG0396	ATPase activity
MUA88_RS02650	COG0719	Fe-S assembly protein
MUA88_RS02655	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
MUA88_RS02660	COG0822	iron-sulfur transferase activity
MUA88_RS02665	COG0719	Fe-S assembly protein
MUA88_RS02690	COG0456	acetyltransferase
MUA88_RS02695	COG2808	Putative FMN-binding domain
MUA88_RS02700	COG1253	flavin adenine dinucleotide binding
MUA88_RS02705	COG2070	2-Nitropropane dioxygenase
MUA88_RS02710	COG1801	Protein of unknown function DUF72
MUA88_RS02715	COG0730	response to heat
MUA88_RS02720	COG0737	Belongs to the 5'-nucleotidase family
MUA88_RS02730	COG4470	Protein conserved in bacteria
MUA88_RS02740	COG2445	Protein of unknown function DUF86
MUA88_RS02745	COG0647	UMP catabolic process
MUA88_RS02755	COG4837	Protein of unknown function (DUF1462)
MUA88_RS02760	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
MUA88_RS02765	COG1252	NADH dehydrogenase
MUA88_RS02770	COG4844	belongs to the
MUA88_RS02775	COG0316	Belongs to the HesB IscA family
MUA88_RS02780	COG1252	NADH dehydrogenase
MUA88_RS02785	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
MUA88_RS02790	COG2056	Na+-H+ antiporter family
MUA88_RS02795	COG2050	protein possibly involved in aromatic compounds catabolism
MUA88_RS02825	COG1320	monovalent cation:proton antiporter activity
MUA88_RS02830	COG2212	antiporter activity
MUA88_RS02835	COG1863	multisubunit Na H antiporter MnhE subunit
MUA88_RS02840	COG0651	ATP synthesis coupled electron transport
MUA88_RS02845	COG1006	Multisubunit Na H antiporter MnhC subunit
MUA88_RS02850	COG2111	Na H antiporter
MUA88_RS02855	COG2111	Na H antiporter
MUA88_RS02855	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
MUA88_RS02865	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
MUA88_RS02875	COG1846	Transcriptional regulator
MUA88_RS02880	COG0346	lactoylglutathione lyase activity
MUA88_RS02885	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
MUA88_RS02895	COG1098	S1 RNA binding domain
MUA88_RS02910	COG1012	belongs to the aldehyde dehydrogenase family
MUA88_RS02935	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS02945	COG0165	Argininosuccinate lyase
MUA88_RS02950	COG0137	argininosuccinate synthase activity
MUA88_RS02955	COG0166	Belongs to the GPI family
MUA88_RS02965	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
MUA88_RS02970	COG1074	ATP-dependent DNA helicase activity
MUA88_RS02975	COG0179	Fumarylacetoacetate (FAA) hydrolase
MUA88_RS02985	COG0446	pyridine nucleotide-disulphide oxidoreductase
MUA88_RS02990	COG0561	phosphatase activity
MUA88_RS02995	COG2151	metal-sulfur cluster biosynthetic enzyme
MUA88_RS03005	COG0542	response to heat
MUA88_RS03010	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
MUA88_RS03035	COG0601	transmembrane transport
MUA88_RS03040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
MUA88_RS03045	COG0444	Belongs to the ABC transporter superfamily
MUA88_RS03050	COG4608	Belongs to the ABC transporter superfamily
MUA88_RS03055	COG4166	transmembrane transport
MUA88_RS03065	COG0180	Tryptophanyl-tRNA synthetase
MUA88_RS03070	COG1393	Belongs to the ArsC family
MUA88_RS03075	COG4862	establishment of competence for transformation
MUA88_RS03085	COG1164	Oligoendopeptidase f
MUA88_RS03110	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
MUA88_RS03115	COG2346	COG2346, Truncated hemoglobins
MUA88_RS03120	COG4116	CYTH
MUA88_RS03130	COG2357	RelA SpoT domain protein
MUA88_RS03135	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
MUA88_RS03140	COG0564	pseudouridine synthase activity
MUA88_RS03145	COG2239	Acts as a magnesium transporter
MUA88_RS03150	COG0475	glutathione-regulated potassium exporter activity
MUA88_RS03150	COG0569	domain protein
MUA88_RS03160	COG0628	permease
MUA88_RS03165	COG1115	amino acid carrier protein
MUA88_RS03175	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
MUA88_RS03180	COG2814	Major facilitator Superfamily
MUA88_RS03185	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
MUA88_RS03190	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
MUA88_RS03200	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
MUA88_RS03205	COG0861	Integral membrane protein TerC family
MUA88_RS03210	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
MUA88_RS03215	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
MUA88_RS03220	COG0737	Belongs to the 5'-nucleotidase family
MUA88_RS03265	COG4873	Protein conserved in bacteria
MUA88_RS03280	COG0456	acetyltransferase
MUA88_RS03285	COG4619	ABC transporter
MUA88_RS03290	COG0390	transport system, permease component
MUA88_RS03295	COG1575	Belongs to the MenA family. Type 1 subfamily
MUA88_RS03300	COG1169	isochorismate synthase
MUA88_RS03305	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
MUA88_RS03315	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
MUA88_RS03320	COG0436	Aminotransferase
MUA88_RS03325	COG3594	Acyltransferase
MUA88_RS03350	COG1316	TRANSCRIPTIONal
MUA88_RS03360	COG1017	nitric oxide dioxygenase activity
MUA88_RS03360	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
MUA88_RS03370	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
MUA88_RS03385	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
MUA88_RS03390	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
MUA88_RS03395	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
MUA88_RS03405	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
MUA88_RS03410	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
MUA88_RS03415	COG0047	phosphoribosylformylglycinamidine synthase activity
MUA88_RS03420	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
MUA88_RS03425	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
MUA88_RS03430	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
MUA88_RS03440	COG0138	bifunctional purine biosynthesis protein purh
MUA88_RS03455	COG1122	ATPase activity
MUA88_RS03475	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
MUA88_RS03485	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
MUA88_RS03500	COG0569	domain protein
MUA88_RS03505	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
MUA88_RS03510	COG5503	Protein of unknown function (DUF1447)
MUA88_RS03545	COG4476	Belongs to the UPF0223 family
MUA88_RS03555	COG3842	ATPase activity
MUA88_RS03560	COG1177	transmembrane transport
MUA88_RS03565	COG1177	transmembrane transport
MUA88_RS03570	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
MUA88_RS03585	COG4493	Belongs to the UPF0637 family
MUA88_RS03590	COG0483	inositol monophosphate 1-phosphatase activity
MUA88_RS03600	COG1217	gtp-binding protein TYPA
MUA88_RS03605	COG1902	pentaerythritol trinitrate reductase activity
MUA88_RS03615	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
MUA88_RS03620	COG4838	Belongs to the UPF0358 family
MUA88_RS03625	COG0772	Belongs to the SEDS family
MUA88_RS03635	COG1612	heme a metabolic process
MUA88_RS03640	COG0109	protoheme IX farnesyltransferase activity
MUA88_RS03650	COG1349	DNA-binding transcription factor activity
MUA88_RS03680	COG1105	Belongs to the carbohydrate kinase PfkB family
MUA88_RS03695	COG3679	Belongs to the UPF0342 family
MUA88_RS03715	COG0742	ribosomal rna small subunit methyltransferase
MUA88_RS03720	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
MUA88_RS03735	COG0333	Belongs to the bacterial ribosomal protein bL32 family
MUA88_RS03740	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
MUA88_RS03745	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
MUA88_RS03750	COG0072	phenylalanine-tRNA ligase activity
MUA88_RS03760	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
MUA88_RS03770	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
MUA88_RS03770	COG1796	DNA polymerase
MUA88_RS03785	COG0322	excinuclease ABC activity
MUA88_RS03790	COG2009	succinate dehydrogenase
MUA88_RS03795	COG1053	succinate dehydrogenase
MUA88_RS03800	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
MUA88_RS03850	COG0582	viral genome integration into host DNA
MUA88_RS03870	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
MUA88_RS03950	COG0305	Participates in initiation and elongation during chromosome replication
MUA88_RS03985	COG0756	dUTP diphosphatase activity
MUA88_RS04080	COG0739	heme binding
MUA88_RS04105	COG4824	toxin secretion phage lysis holin
MUA88_RS04110	COG1388	LysM domain
MUA88_RS04110	COG5632	N-Acetylmuramoyl-L-alanine amidase
MUA88_RS04155	COG0454	-acetyltransferase
MUA88_RS04160	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
MUA88_RS04165	COG2001	Belongs to the MraZ family
MUA88_RS04175	COG4839	cell division protein FtsL
MUA88_RS04180	COG0768	penicillin binding
MUA88_RS04190	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
MUA88_RS04200	COG0849	cell division
MUA88_RS04210	COG1496	oxidoreductase activity
MUA88_RS04215	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
MUA88_RS04220	COG1799	cell septum assembly
MUA88_RS04225	COG0762	integral membrane protein
MUA88_RS04230	COG2302	S4 RNA-binding domain
MUA88_RS04235	COG3599	regulation of cell shape
MUA88_RS04260	COG0564	pseudouridine synthase activity
MUA88_RS04265	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
MUA88_RS04275	COG0540	Belongs to the ATCase OTCase family
MUA88_RS04285	COG0505	Belongs to the CarA family
MUA88_RS04290	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
MUA88_RS04300	COG0167	dihydroorotate dehydrogenase activity
MUA88_RS04305	COG0284	orotidine-5'-phosphate decarboxylase activity
MUA88_RS04310	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
MUA88_RS04315	COG1846	Transcriptional regulator
MUA88_RS04325	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
MUA88_RS04335	COG1293	RNA-binding protein homologous to eukaryotic snRNP
MUA88_RS04340	COG0194	GDP metabolic process
MUA88_RS04345	COG1758	RNA polymerase activity
MUA88_RS04350	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
MUA88_RS04355	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
MUA88_RS04365	COG0242	peptide deformylase activity
MUA88_RS04370	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
MUA88_RS04375	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
MUA88_RS04375	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
MUA88_RS04380	COG0820	rRNA (adenine-C2-)-methyltransferase activity
MUA88_RS04395	COG1162	GTPase activity
MUA88_RS04400	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
MUA88_RS04405	COG1564	THIamine pyrophosphokinase
MUA88_RS04415	COG1302	Protein conserved in bacteria
MUA88_RS04420	COG1461	Dihydroxyacetone kinase
MUA88_RS04425	COG1760	l-serine dehydratase
MUA88_RS04430	COG1760	l-serine dehydratase
MUA88_RS04440	COG1349	DNA-binding transcription factor activity
MUA88_RS04445	COG0416	fatty acid biosynthetic process
MUA88_RS04460	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
MUA88_RS04465	COG0571	ribonuclease III activity
MUA88_RS04470	COG1196	nuclear chromosome segregation
MUA88_RS04475	COG0552	protein localization to endoplasmic reticulum
MUA88_RS04480	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
MUA88_RS04485	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
MUA88_RS04490	COG0228	four-way junction DNA binding
MUA88_RS04500	COG0336	Belongs to the RNA methyltransferase TrmD family
MUA88_RS04535	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
MUA88_RS04545	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
MUA88_RS04565	COG0045	succinate-CoA ligase (ADP-forming) activity
MUA88_RS04575	COG0758	DNA mediated transformation
MUA88_RS04580	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
MUA88_RS04585	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
MUA88_RS04590	COG4974	Belongs to the 'phage' integrase family
MUA88_RS04600	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
MUA88_RS04610	COG0052	Belongs to the universal ribosomal protein uS2 family
MUA88_RS04615	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
MUA88_RS04620	COG0528	UMP kinase activity
MUA88_RS04625	COG0233	cytoplasmic translational termination
MUA88_RS04630	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
MUA88_RS04635	COG4589	Belongs to the CDS family
MUA88_RS04640	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
MUA88_RS04650	COG0442	prolyl-tRNA aminoacylation
MUA88_RS04665	COG0195	Participates in both transcription termination and antitermination
MUA88_RS04670	COG2740	Nucleic-acid-binding protein implicated in transcription termination
MUA88_RS04680	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
MUA88_RS04695	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
MUA88_RS04700	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
MUA88_RS04705	COG0196	riboflavin kinase activity
MUA88_RS04715	COG1185	polyribonucleotide nucleotidyltransferase activity
MUA88_RS04740	COG2188	Transcriptional regulator
MUA88_RS04745	COG0612	Peptidase, M16
MUA88_RS04750	COG0612	Peptidase, M16
MUA88_RS04755	COG0300	oxidoreductase activity
MUA88_RS04775	COG1058	Belongs to the CinA family
MUA88_RS04775	COG1546	Belongs to the CinA family
MUA88_RS04780	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
MUA88_RS04785	COG1418	mRNA catabolic process
MUA88_RS04800	COG1692	metallophosphoesterase
MUA88_RS04805	COG0674	pyruvate-flavodoxin oxidoreductase activity
MUA88_RS04805	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
MUA88_RS04810	COG1013	pyruvate-flavodoxin oxidoreductase activity
MUA88_RS04815	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
MUA88_RS04820	COG4550	Control of competence regulator ComK, YlbF/YmcA
MUA88_RS04835	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
MUA88_RS04840	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
MUA88_RS04845	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
MUA88_RS04850	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
MUA88_RS04870	COG1923	regulation of RNA biosynthetic process
MUA88_RS04875	COG0386	Belongs to the glutathione peroxidase family
MUA88_RS04880	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
MUA88_RS04885	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
MUA88_RS04890	COG0789	Transcriptional regulator
MUA88_RS04935	COG0589	response to stress
MUA88_RS04950	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
MUA88_RS04960	COG4109	DRTGG domain
MUA88_RS04965	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
MUA88_RS04975	COG0281	malic enzyme
MUA88_RS04980	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
MUA88_RS04985	COG0825	malonyl-CoA metabolic process
MUA88_RS04990	COG0205	6-phosphofructokinase activity
MUA88_RS04995	COG0469	pyruvate kinase activity
MUA88_RS05000	COG0372	Belongs to the citrate synthase family
MUA88_RS05010	COG0745	RESPONSE REGULATOR receiver
MUA88_RS05015	COG5002	protein histidine kinase activity
MUA88_RS05020	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
MUA88_RS05020	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
MUA88_RS05025	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
MUA88_RS05030	COG0237	dephospho-CoA kinase activity
MUA88_RS05035	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
MUA88_RS05040	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
MUA88_RS05045	COG3611	Membrane attachment protein
MUA88_RS05050	COG1484	DNA-dependent DNA replication
MUA88_RS05055	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
MUA88_RS05060	COG0833	amino acid
MUA88_RS05065	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
MUA88_RS05070	COG0291	Belongs to the bacterial ribosomal protein bL35 family
MUA88_RS05090	COG0544	peptidyl-prolyl cis-trans isomerase activity
MUA88_RS05095	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
MUA88_RS05105	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
MUA88_RS05115	COG0181	hydroxymethylbilane synthase activity
MUA88_RS05130	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
MUA88_RS05140	COG2818	Glycosylase
MUA88_RS05145	COG0525	valine-tRNA ligase activity
MUA88_RS05150	COG0285	dihydrofolate synthase activity
MUA88_RS05155	COG2003	Belongs to the UPF0758 family
MUA88_RS05165	COG1792	Involved in formation and maintenance of cell shape
MUA88_RS05175	COG0261	This protein binds to 23S rRNA in the presence of protein L20
MUA88_RS05180	COG2868	ribosomal protein
MUA88_RS05195	COG4492	Belongs to the UPF0735 family
MUA88_RS05200	COG0632	four-way junction helicase activity
MUA88_RS05205	COG2255	four-way junction helicase activity
MUA88_RS05215	COG0343	queuine tRNA-ribosyltransferase activity
MUA88_RS05220	COG1862	Preprotein translocase
MUA88_RS05225	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
MUA88_RS05225	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
MUA88_RS05230	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
MUA88_RS05230	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
MUA88_RS05235	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
MUA88_RS05245	COG1490	D-aminoacyl-tRNA deacylase activity
MUA88_RS05260	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
MUA88_RS05270	COG1733	regulation of RNA biosynthetic process
MUA88_RS05280	COG0702	epimerase
MUA88_RS05310	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS05325	COG0444	Belongs to the ABC transporter superfamily
MUA88_RS05330	COG4608	Belongs to the ABC transporter superfamily
MUA88_RS05335	COG0601	transmembrane transport
MUA88_RS05340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
MUA88_RS05345	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
MUA88_RS05350	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
MUA88_RS05355	COG1959	2 iron, 2 sulfur cluster binding
MUA88_RS05365	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
MUA88_RS05370	COG1104	cysteine desulfurase activity
MUA88_RS05375	COG0482	sulfurtransferase activity
MUA88_RS05385	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
MUA88_RS05390	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
MUA88_RS05395	COG4472	Bacterial protein of unknown function (DUF965)
MUA88_RS05400	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
MUA88_RS05405	COG3906	Belongs to the UPF0473 family
MUA88_RS05415	COG4122	O-methyltransferase activity
MUA88_RS05420	COG0826	peptidase U32
MUA88_RS05425	COG0826	peptidase U32
MUA88_RS05430	COG0572	uridine kinase
MUA88_RS05440	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
MUA88_RS05445	COG1984	allophanate hydrolase subunit 2
MUA88_RS05450	COG0511	ligase activity, forming carbon-carbon bonds
MUA88_RS05455	COG0439	Biotin carboxylase
MUA88_RS05460	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
MUA88_RS05465	COG1914	H( )-stimulated, divalent metal cation uptake system
MUA88_RS05470	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
MUA88_RS05475	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
MUA88_RS05480	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
MUA88_RS05485	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
MUA88_RS05490	COG1534	Rna-binding protein
MUA88_RS05500	COG1713	HD superfamily hydrolase involved in NAD metabolism
MUA88_RS05505	COG0799	negative regulation of ribosome biogenesis
MUA88_RS05510	COG2226	methyltransferase
MUA88_RS05515	COG1596	polysaccharide export
MUA88_RS05515	COG1555	photosystem II stabilization
MUA88_RS05520	COG2131	deaminase
MUA88_RS05525	COG2333	competence protein COMEC
MUA88_RS05525	COG0658	competence protein
MUA88_RS05530	COG1466	dna polymerase III delta subunit
MUA88_RS05535	COG0268	Binds directly to 16S ribosomal RNA
MUA88_RS05545	COG0635	Involved in the biosynthesis of porphyrin-containing compound
MUA88_RS05550	COG1420	regulation of RNA biosynthetic process
MUA88_RS05555	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
MUA88_RS05565	COG0484	heat shock protein binding
MUA88_RS05575	COG1385	rRNA (uridine-N3-)-methyltransferase activity
MUA88_RS05580	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
MUA88_RS05590	COG1030	water channel activity
MUA88_RS05595	COG4864	UPF0365 protein
MUA88_RS05605	COG1702	phosphate starvation-inducible protein PhoH
MUA88_RS05615	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
MUA88_RS05620	COG0295	cytidine deaminase activity
MUA88_RS05630	COG1381	Involved in DNA repair and RecF pathway recombination
MUA88_RS05635	COG0423	glycine-tRNA ligase activity
MUA88_RS05640	COG0517	IMP dehydrogenase activity
MUA88_RS05645	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
MUA88_RS05650	COG0358	DNA primase activity
MUA88_RS05655	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
MUA88_RS05660	COG2384	SAM-dependent methyltransferase
MUA88_RS05670	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
MUA88_RS05675	COG0513	Belongs to the DEAD box helicase family
MUA88_RS05680	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
MUA88_RS05685	COG1121	(ABC) transporter
MUA88_RS05690	COG1108	ABC-type Mn2 Zn2 transport systems permease components
MUA88_RS05700	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
MUA88_RS05710	COG0768	penicillin binding
MUA88_RS05720	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
MUA88_RS05725	COG0705	Rhomboid family
MUA88_RS05730	COG4483	Protein conserved in bacteria
MUA88_RS05735	COG1940	carbohydrate kinase activity
MUA88_RS05740	COG0011	TIGRFAM Protein of
MUA88_RS05745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
MUA88_RS05755	COG1459	type II secretion system
MUA88_RS05780	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
MUA88_RS05785	COG0404	The glycine cleavage system catalyzes the degradation of glycine
MUA88_RS05795	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
MUA88_RS05800	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
MUA88_RS05805	COG0095	Lipoate-protein ligase
MUA88_RS05820	COG0006	proline dipeptidase activity
MUA88_RS05825	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
MUA88_RS05830	COG0511	ligase activity, forming carbon-carbon bonds
MUA88_RS05835	COG0439	Biotin carboxylase
MUA88_RS05840	COG1302	Protein conserved in bacteria
MUA88_RS05850	COG1570	exodeoxyribonuclease VII activity
MUA88_RS05865	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
MUA88_RS05875	COG0497	DNA recombination
MUA88_RS05880	COG0280	phosphate acetyltransferase
MUA88_RS05890	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
MUA88_RS05895	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
MUA88_RS05900	COG0022	dehydrogenase e1 component
MUA88_RS05905	COG0508	dehydrogenase complex catalyzes the overall conversion of
MUA88_RS05915	COG4129	membrane
MUA88_RS05925	COG2195	Cleaves the N-terminal amino acid of tripeptides
MUA88_RS05940	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
MUA88_RS05950	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
MUA88_RS05955	COG0300	oxidoreductase activity
MUA88_RS05960	COG0667	Aldo Keto reductase
MUA88_RS05970	COG0735	belongs to the Fur family
MUA88_RS05975	COG4974	Belongs to the 'phage' integrase family
MUA88_RS05985	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
MUA88_RS05990	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
MUA88_RS05995	COG1187	pseudouridine synthase activity
MUA88_RS06000	COG0745	RESPONSE REGULATOR receiver
MUA88_RS06005	COG5002	protein histidine kinase activity
MUA88_RS06015	COG1141	Ferredoxin
MUA88_RS06025	COG0514	ATP-dependent DNA helicase (RecQ)
MUA88_RS06035	COG0492	ferredoxin-NADP+ reductase activity
MUA88_RS06040	COG0252	asparaginase activity
MUA88_RS06045	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
MUA88_RS06050	COG0539	negative regulation of cytoplasmic translation
MUA88_RS06060	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
MUA88_RS06075	COG2226	methyltransferase
MUA88_RS06080	COG0142	geranyltranstransferase activity
MUA88_RS06095	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
MUA88_RS06100	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
MUA88_RS06105	COG0457	Tetratricopeptide repeat
MUA88_RS06110	COG5582	Belongs to the UPF0302 family
MUA88_RS06115	COG4347	Protein of unknown function (DUF1405)
MUA88_RS06120	COG2738	Putative neutral zinc metallopeptidase
MUA88_RS06125	COG1694	Mazg nucleotide pyrophosphohydrolase
MUA88_RS06130	COG0438	transferase activity, transferring glycosyl groups
MUA88_RS06135	COG0617	tRNA 3'-terminal CCA addition
MUA88_RS06145	COG1199	ATP-dependent helicase activity
MUA88_RS06145	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
MUA88_RS06150	COG0017	Asparaginyl-tRNA synthetase
MUA88_RS06155	COG3935	DnaD domain protein
MUA88_RS06160	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
MUA88_RS06170	COG4499	WXG100 protein secretion system (Wss), protein YukC
MUA88_RS06170	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
MUA88_RS06175	COG3331	DNA recombination
MUA88_RS06185	COG4474	Belongs to the UPF0398 family
MUA88_RS06190	COG3599	regulation of cell shape
MUA88_RS06200	COG0116	Belongs to the methyltransferase superfamily
MUA88_RS06205	COG2962	Rard protein
MUA88_RS06210	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
MUA88_RS06215	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
MUA88_RS06225	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
MUA88_RS06235	COG1413	lyase activity
MUA88_RS06270	COG2190	(PTS) system
MUA88_RS06295	COG0671	phosphoesterase, PA-phosphatase related
MUA88_RS06300	COG0745	RESPONSE REGULATOR receiver
MUA88_RS06305	COG5002	protein histidine kinase activity
MUA88_RS06330	COG0714	Associated with various cellular activities
MUA88_RS06335	COG4548	von Willebrand factor, type A
MUA88_RS06340	COG1114	Component of the transport system for branched-chain amino acids
MUA88_RS06345	COG3853	Toxic anion resistance protein (TelA)
MUA88_RS06380	COG1473	amidohydrolase
MUA88_RS06385	COG2171	N-acyltransferase activity
MUA88_RS06390	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
MUA88_RS06395	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
MUA88_RS06400	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
MUA88_RS06405	COG0488	(ABC) transporter
MUA88_RS06410	COG2996	Protein conserved in bacteria
MUA88_RS06425	COG2348	transferase activity, transferring amino-acyl groups
MUA88_RS06435	COG0287	Prephenate dehydrogenase
MUA88_RS06440	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
MUA88_RS06475	COG0628	permease
MUA88_RS06485	COG3711	transcriptional antiterminator
MUA88_RS06490	COG1115	amino acid carrier protein
MUA88_RS06495	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
MUA88_RS06505	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
MUA88_RS06510	COG4841	protein insertion into membrane
MUA88_RS06515	COG0824	Thioesterase
MUA88_RS06525	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
MUA88_RS06530	COG1970	mechanosensitive ion channel activity
MUA88_RS06535	COG0419	ATPase involved in DNA repair
MUA88_RS06545	COG4846	Membrane protein involved in cytochrome C biogenesis
MUA88_RS06550	COG3763	UPF0154 protein
MUA88_RS06560	COG4224	UPF0291 protein
MUA88_RS06570	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
MUA88_RS06575	COG0516	GMP reductase activity
MUA88_RS06580	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
MUA88_RS06590	COG0753	catalase activity
MUA88_RS06595	COG0833	amino acid
MUA88_RS06605	COG0561	phosphatase activity
MUA88_RS06610	COG0083	homoserine kinase activity
MUA88_RS06615	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
MUA88_RS06620	COG0460	homoserine dehydrogenase
MUA88_RS06625	COG0527	aspartate kinase activity
MUA88_RS06635	COG1525	nuclease
MUA88_RS06650	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
MUA88_RS06655	COG0827	DNA restriction-modification system
MUA88_RS06660	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
MUA88_RS06665	COG1714	RDD family
MUA88_RS06670	COG0616	signal peptide processing
MUA88_RS06690	COG0301	tRNA thio-modification
MUA88_RS06695	COG1104	cysteine desulfurase activity
MUA88_RS06700	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
MUA88_RS06705	COG1956	GAF domain-containing protein
MUA88_RS06720	COG0584	glycerophosphoryl diester phosphodiesterase
MUA88_RS06725	COG1764	response to oxidative stress
MUA88_RS06730	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
MUA88_RS06735	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
MUA88_RS06750	COG0204	Acyl-transferase
MUA88_RS06755	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
MUA88_RS06760	COG0542	response to heat
MUA88_RS06775	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
MUA88_RS06780	COG2759	Belongs to the formate--tetrahydrofolate ligase family
MUA88_RS06785	COG1609	Transcriptional regulator
MUA88_RS06790	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
MUA88_RS06790	COG1605	Chorismate mutase
MUA88_RS06800	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
MUA88_RS06805	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
MUA88_RS06810	COG1674	ftsk spoiiie
MUA88_RS06815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
MUA88_RS06820	COG4848	Belongs to the UPF0354 family
MUA88_RS06825	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
MUA88_RS06830	COG1363	Peptidase, m42
MUA88_RS06840	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
MUA88_RS06850	COG0510	thiamine kinase activity
MUA88_RS06855	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
MUA88_RS06860	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
MUA88_RS06870	COG1187	pseudouridine synthase activity
MUA88_RS06875	COG2244	polysaccharide biosynthetic process
MUA88_RS06880	COG2081	HI0933 family
MUA88_RS06885	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
MUA88_RS06895	COG2814	Major facilitator Superfamily
MUA88_RS06900	COG1242	4 iron, 4 sulfur cluster binding
MUA88_RS06905	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
MUA88_RS06915	COG0039	L-malate dehydrogenase activity
MUA88_RS06925	COG2267	carboxylic ester hydrolase activity
MUA88_RS06935	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
MUA88_RS06940	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
MUA88_RS06940	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
MUA88_RS06950	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
MUA88_RS06950	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
MUA88_RS06960	COG5632	N-Acetylmuramoyl-L-alanine amidase
MUA88_RS06960	COG4193	domain, Protein
MUA88_RS06960	COG3266	domain, Protein
MUA88_RS06985	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
MUA88_RS06995	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
MUA88_RS07000	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
MUA88_RS07010	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
MUA88_RS07015	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
MUA88_RS07020	COG1506	peptidase
MUA88_RS07025	COG0494	nUDIX hydrolase
MUA88_RS07030	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
MUA88_RS07040	COG0318	PFAM AMP-dependent synthetase and ligase
MUA88_RS07095	COG1349	DNA-binding transcription factor activity
MUA88_RS07100	COG2814	Major facilitator Superfamily
MUA88_RS07120	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
MUA88_RS07130	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
MUA88_RS07135	COG2329	Antibiotic biosynthesis monooxygenase
MUA88_RS07145	COG1131	(ABC) transporter
MUA88_RS07150	COG0537	adenosine 5'-monophosphoramidase activity
MUA88_RS07160	COG1846	Transcriptional regulator
MUA88_RS07170	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
MUA88_RS07175	COG3481	metal-dependent phosphohydrolase, HD sub domain
MUA88_RS07185	COG0420	3'-5' exonuclease activity
MUA88_RS07190	COG3679	Belongs to the UPF0342 family
MUA88_RS07195	COG4399	Belongs to the UPF0754 family
MUA88_RS07210	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
MUA88_RS07215	COG2197	response regulator
MUA88_RS07220	COG2203	Gaf domain
MUA88_RS07220	COG4585	Histidine kinase
MUA88_RS07225	COG0564	pseudouridine synthase activity
MUA88_RS07230	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
MUA88_RS07240	COG0114	fumarate hydratase activity
MUA88_RS07255	COG0363	glucosamine-6-phosphate deaminase activity
MUA88_RS07260	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
MUA88_RS07270	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
MUA88_RS07275	COG1126	abc transporter atp-binding protein
MUA88_RS07280	COG0765	amino acid transport
MUA88_RS07440	COG0735	belongs to the Fur family
MUA88_RS07450	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
MUA88_RS07455	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
MUA88_RS07460	COG4129	membrane
MUA88_RS07470	COG3557	Belongs to the UPF0374 family
MUA88_RS07475	COG1194	a g-specific adenine glycosylase
MUA88_RS07480	COG1988	membrane-bound metal-dependent
MUA88_RS07490	COG1134	teichoic acid transport
MUA88_RS07500	COG2137	regulation of response to DNA damage stimulus
MUA88_RS07505	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
MUA88_RS07510	COG0028	Belongs to the TPP enzyme family
MUA88_RS07515	COG0693	protein deglycase activity
MUA88_RS07525	COG0535	radical SAM domain protein
MUA88_RS07530	COG1607	acyl-coa hydrolase
MUA88_RS07535	COG2309	aminopeptidase activity
MUA88_RS07540	COG4840	Belongs to the UPF0435 family
MUA88_RS07555	COG1295	ribonuclease BN
MUA88_RS07560	COG0288	reversible hydration of carbon dioxide
MUA88_RS07585	COG0024	Methionine aminopeptidase
MUA88_RS07590	COG4129	membrane
MUA88_RS07605	COG1528	Iron-storage protein
MUA88_RS07615	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
MUA88_RS07645	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
MUA88_RS07660	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
MUA88_RS07670	COG0656	L-ascorbic acid biosynthetic process
MUA88_RS07675	COG3177	Filamentation induced by cAMP protein fic
MUA88_RS07680	COG2723	6-phospho-beta-galactosidase activity
MUA88_RS07695	COG3711	transcriptional antiterminator
MUA88_RS07700	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
MUA88_RS07705	COG1597	lipid kinase activity
MUA88_RS07710	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
MUA88_RS07720	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
MUA88_RS07725	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
MUA88_RS07745	COG4851	CamS sex pheromone cAM373 precursor
MUA88_RS07760	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
MUA88_RS07765	COG1876	peptidase activity
MUA88_RS07770	COG4496	protein, YerC YecD
MUA88_RS07775	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
MUA88_RS07790	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
MUA88_RS07800	COG0077	Prephenate dehydratase
MUA88_RS07810	COG1335	isochorismatase
MUA88_RS07815	COG1227	inorganic diphosphatase activity
MUA88_RS07825	COG1012	belongs to the aldehyde dehydrogenase family
MUA88_RS07830	COG3832	glyoxalase III activity
MUA88_RS07835	COG2706	6-phosphogluconolactonase activity
MUA88_RS07865	COG2610	gluconate transmembrane transporter activity
MUA88_RS07870	COG1070	Carbohydrate kinase
MUA88_RS07885	COG1131	(ABC) transporter
MUA88_RS07900	COG1131	(ABC) transporter
MUA88_RS07905	COG1725	Transcriptional regulator
MUA88_RS07920	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
MUA88_RS08015	COG3617	BRO family, N-terminal domain
MUA88_RS08025	COG3800	Transcriptional regulator
MUA88_RS08025	COG1396	sequence-specific DNA binding
MUA88_RS08030	COG0582	viral genome integration into host DNA
MUA88_RS08040	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
MUA88_RS08050	COG1064	alcohol dehydrogenase
MUA88_RS08055	COG0789	Transcriptional regulator
MUA88_RS08065	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
MUA88_RS08070	COG4512	PFAM Accessory gene regulator B
MUA88_RS08095	COG1621	beta-fructofuranosidase activity
MUA88_RS08100	COG1609	Transcriptional regulator
MUA88_RS08105	COG0425	Belongs to the sulfur carrier protein TusA family
MUA88_RS08115	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
MUA88_RS08120	COG0488	(ABC) transporter
MUA88_RS08125	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
MUA88_RS08130	COG0456	acetyltransferase
MUA88_RS08135	COG1214	PFAM Peptidase M22, glycoprotease
MUA88_RS08140	COG0802	atpase or kinase
MUA88_RS08145	COG0129	dihydroxy-acid dehydratase activity
MUA88_RS08150	COG0028	Belongs to the TPP enzyme family
MUA88_RS08165	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
MUA88_RS08175	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
MUA88_RS08220	COG2183	response to ionizing radiation
MUA88_RS08225	COG1191	sigma factor activity
MUA88_RS08240	COG2208	phosphoserine phosphatase activity
MUA88_RS08245	COG2337	Toxic component of a toxin-antitoxin (TA) module
MUA88_RS08285	COG0513	Belongs to the DEAD box helicase family
MUA88_RS08290	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
MUA88_RS08295	COG1181	Belongs to the D-alanine--D-alanine ligase family
MUA88_RS08300	COG0772	Belongs to the SEDS family
MUA88_RS08310	COG2217	Heavy metal translocating P-type atpase
MUA88_RS08315	COG2608	mercury ion transmembrane transporter activity
MUA88_RS08325	COG1937	Protein conserved in bacteria
MUA88_RS08330	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
MUA88_RS08335	COG1418	mRNA catabolic process
MUA88_RS08340	COG0706	membrane insertase activity
MUA88_RS08345	COG0352	thiamine-phosphate diphosphorylase activity
MUA88_RS08350	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
MUA88_RS08375	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
MUA88_RS08395	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
MUA88_RS08400	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
MUA88_RS08405	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
MUA88_RS08410	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
MUA88_RS08415	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
MUA88_RS08420	COG0356	it plays a direct role in the translocation of protons across the membrane
MUA88_RS08430	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
MUA88_RS08435	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
MUA88_RS08440	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
MUA88_RS08445	COG4475	Protein of unknown function (DUF436)
MUA88_RS08450	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
MUA88_RS08455	COG0009	L-threonylcarbamoyladenylate synthase
MUA88_RS08460	COG2890	protein-(glutamine-N5) methyltransferase activity
MUA88_RS08465	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
MUA88_RS08475	COG0254	rRNA binding
MUA88_RS08480	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
MUA88_RS08495	COG1733	regulation of RNA biosynthetic process
MUA88_RS08500	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
MUA88_RS08505	COG0191	fructose-bisphosphate aldolase activity
MUA88_RS08510	COG4821	SIS domain
MUA88_RS08515	COG2271	Major facilitator Superfamily
MUA88_RS08520	COG0504	CTP synthase activity
MUA88_RS08530	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
MUA88_RS08535	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
MUA88_RS08550	COG5146	pantothenate kinase activity
MUA88_RS08570	COG1854	S-ribosylhomocysteine lyase activity
MUA88_RS08585	COG0813	purine-nucleoside phosphorylase activity
MUA88_RS08590	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
MUA88_RS08600	COG1757	Na H antiporter
MUA88_RS08615	COG2186	Transcriptional regulator
MUA88_RS08630	COG1119	ATPase activity
MUA88_RS08635	COG1119	ATPase activity
MUA88_RS08650	COG3711	transcriptional antiterminator
MUA88_RS08655	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
MUA88_RS08660	COG0246	Mannitol dehydrogenase
MUA88_RS08665	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
MUA88_RS08675	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
MUA88_RS08745	COG0489	protein tyrosine kinase activity
MUA88_RS08750	COG2814	Major facilitator Superfamily
MUA88_RS08765	COG1272	protein, Hemolysin III
MUA88_RS08770	COG4284	Utp--glucose-1-phosphate uridylyltransferase
MUA88_RS08775	COG1988	membrane-bound metal-dependent
MUA88_RS08785	COG3314	Sporulation integral membrane protein YlbJ
MUA88_RS08790	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS08795	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS08800	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
MUA88_RS08805	COG3457	Alanine racemase
MUA88_RS08810	COG4264	IucA IucC family
MUA88_RS08815	COG2814	Major facilitator Superfamily
MUA88_RS08820	COG4264	IucA IucC family
MUA88_RS08825	COG2814	Major facilitator Superfamily
MUA88_RS08830	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
MUA88_RS08845	COG1302	Protein conserved in bacteria
MUA88_RS08880	COG5002	protein histidine kinase activity
MUA88_RS08890	COG5002	protein histidine kinase activity
MUA88_RS08890	COG3850	Histidine kinase
MUA88_RS08895	COG0745	RESPONSE REGULATOR receiver
MUA88_RS08905	COG1929	Belongs to the glycerate kinase type-1 family
MUA88_RS08910	COG1126	abc transporter atp-binding protein
MUA88_RS08915	COG0765	amino acid transport
MUA88_RS08920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
MUA88_RS08970	COG0101	tRNA pseudouridine synthase activity
MUA88_RS08980	COG1122	ATPase activity
MUA88_RS08990	COG0203	ribosomal protein L17
MUA88_RS08995	COG0202	RNA polymerase activity
MUA88_RS09000	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
MUA88_RS09010	COG0257	Belongs to the bacterial ribosomal protein bL36 family
MUA88_RS09025	COG0201	protein transport
MUA88_RS09035	COG1841	ribosomal large subunit assembly
MUA88_RS09050	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
MUA88_RS09060	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
MUA88_RS09070	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
MUA88_RS09075	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
MUA88_RS09085	COG0255	Belongs to the universal ribosomal protein uL29 family
MUA88_RS09095	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
MUA88_RS09100	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
MUA88_RS09105	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
MUA88_RS09110	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
MUA88_RS09115	COG0089	rRNA binding
MUA88_RS09120	COG0088	Forms part of the polypeptide exit tunnel
MUA88_RS09125	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
MUA88_RS09140	COG2252	PERMEase
MUA88_RS09170	COG0436	Aminotransferase
MUA88_RS09175	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
MUA88_RS09180	COG2348	transferase activity, transferring amino-acyl groups
MUA88_RS09190	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
MUA88_RS09195	COG0746	molybdenum cofactor guanylyltransferase activity
MUA88_RS09205	COG0314	molybdopterin synthase activity
MUA88_RS09210	COG1763	Mo-molybdopterin cofactor biosynthetic process
MUA88_RS09215	COG0303	'Molybdopterin
MUA88_RS09225	COG0521	Mo-molybdopterin cofactor biosynthetic process
MUA88_RS09230	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
MUA88_RS09235	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
MUA88_RS09240	COG4149	molybdate abc transporter
MUA88_RS09245	COG0725	ABC transporter, periplasmic molybdate-binding protein
MUA88_RS09255	COG1902	pentaerythritol trinitrate reductase activity
MUA88_RS09255	COG0446	pyridine nucleotide-disulphide oxidoreductase
MUA88_RS09260	COG4221	oxidoreductase activity
MUA88_RS09265	COG0596	Alpha beta hydrolase
MUA88_RS09285	COG1268	BioY protein
MUA88_RS09290	COG1940	carbohydrate kinase activity
MUA88_RS09305	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
MUA88_RS09310	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
MUA88_RS09315	COG2832	Protein of unknown function (DUF454)
MUA88_RS09320	COG1960	acyl-CoA dehydrogenase activity
MUA88_RS09380	COG3383	formate dehydrogenase (NAD+) activity
MUA88_RS09385	COG1316	TRANSCRIPTIONal
MUA88_RS09400	COG1266	CAAX protease self-immunity
MUA88_RS09410	COG1113	amino acid transport
MUA88_RS09435	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
MUA88_RS09440	COG0346	lactoylglutathione lyase activity
MUA88_RS09450	COG0385	Bile acid
MUA88_RS09470	COG1473	amidohydrolase
MUA88_RS09475	COG0659	secondary active sulfate transmembrane transporter activity
MUA88_RS09480	COG1228	amidohydrolase
MUA88_RS09490	COG3314	Sporulation integral membrane protein YlbJ
MUA88_RS09495	COG0583	DNA-binding transcription factor activity
MUA88_RS09505	COG1266	CAAX protease self-immunity
MUA88_RS09520	COG2017	converts alpha-aldose to the beta-anomer
MUA88_RS09525	COG1742	UPF0060 membrane protein
MUA88_RS09530	COG1668	transmembrane transport
MUA88_RS09535	COG4152	abc transporter atp-binding protein
MUA88_RS09560	COG2094	Belongs to the DNA glycosylase MPG family
MUA88_RS09575	COG1695	Transcriptional regulator
MUA88_RS09585	COG2207	Transcriptional regulator
MUA88_RS09590	COG0786	glutamate:sodium symporter activity
MUA88_RS09595	COG0523	cobalamin synthesis protein
MUA88_RS09605	COG0039	L-malate dehydrogenase activity
MUA88_RS09610	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS09645	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS09650	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
MUA88_RS09655	COG4640	response to antibiotic
MUA88_RS09675	COG0577	efflux transmembrane transporter activity
MUA88_RS09685	COG3850	Histidine kinase
MUA88_RS09685	COG5002	protein histidine kinase activity
MUA88_RS09690	COG0579	oxidoreductase
MUA88_RS09700	COG1620	l-lactate permease
MUA88_RS09715	COG0604	alcohol dehydrogenase
MUA88_RS09720	COG0492	ferredoxin-NADP+ reductase activity
MUA88_RS09735	COG1276	copper resistance
MUA88_RS09735	COG2372	response to copper ion
MUA88_RS09740	COG1283	sodium-dependent phosphate transmembrane transporter activity
MUA88_RS09750	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
MUA88_RS09750	COG1263	PTS System
MUA88_RS09760	COG2807	transmembrane transport
MUA88_RS09770	COG0697	spore germination
MUA88_RS09775	COG1363	Peptidase, m42
MUA88_RS09785	COG4187	Peptidase family M20/M25/M40
MUA88_RS09795	COG2197	response regulator
MUA88_RS09800	COG4585	Histidine kinase
MUA88_RS09810	COG2181	nitrate reductase activity
MUA88_RS09815	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
MUA88_RS09820	COG1140	nitrate reductase beta subunit
MUA88_RS09825	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
MUA88_RS09835	COG1648	precorrin-2 dehydrogenase activity
MUA88_RS09835	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
MUA88_RS09840	COG2146	nitrite reductase [NAD(P)H] activity
MUA88_RS09845	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
MUA88_RS09850	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
MUA88_RS09850	COG1648	precorrin-2 dehydrogenase activity
MUA88_RS09860	COG0454	-acetyltransferase
MUA88_RS09875	COG0471	metal ion transport
MUA88_RS09890	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
MUA88_RS09905	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
MUA88_RS09910	COG0765	amino acid transport
MUA88_RS09915	COG0765	amino acid transport
MUA88_RS09920	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
MUA88_RS09930	COG1929	Belongs to the glycerate kinase type-1 family
MUA88_RS09935	COG3764	Sortase (surface protein transpeptidase)
MUA88_RS09945	COG2271	Major facilitator Superfamily
MUA88_RS09950	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
MUA88_RS09955	COG1115	amino acid carrier protein
MUA88_RS09960	COG1132	(ABC) transporter
MUA88_RS09965	COG1132	(ABC) transporter
MUA88_RS09975	COG0159	tryptophan synthase activity
MUA88_RS09980	COG0133	tryptophan synthase activity
MUA88_RS09985	COG0135	phosphoribosylanthranilate isomerase activity
MUA88_RS09990	COG0134	indole-3-glycerol-phosphate synthase activity
MUA88_RS09995	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
MUA88_RS10000	COG0512	Glutamine amidotransferase of anthranilate synthase
MUA88_RS10005	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
MUA88_RS10010	COG2855	membrane
MUA88_RS10015	COG1063	alcohol dehydrogenase
MUA88_RS10025	COG3835	regulator
MUA88_RS10035	COG0494	nUDIX hydrolase
MUA88_RS10045	COG1028	Short-chain dehydrogenase reductase Sdr
MUA88_RS10060	COG2814	Major facilitator Superfamily
MUA88_RS10085	COG3942	CHAP domain
MUA88_RS10100	COG0778	Nitroreductase
MUA88_RS10110	COG4607	ABC-type enterochelin transport system periplasmic component
MUA88_RS10115	COG4604	ABC transporter, ATP-binding protein
MUA88_RS10120	COG4605	iron ion homeostasis
MUA88_RS10125	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
MUA88_RS10145	COG0583	DNA-binding transcription factor activity
MUA88_RS10150	COG3189	MarR family transcriptional regulator
MUA88_RS10170	COG0577	efflux transmembrane transporter activity
MUA88_RS10175	COG1136	(ABC) transporter
MUA88_RS10195	COG3001	Fructosamine kinase
MUA88_RS10215	COG1263	PTS System
MUA88_RS10215	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
MUA88_RS10220	COG1210	Utp--glucose-1-phosphate uridylyltransferase
MUA88_RS10225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
MUA88_RS10230	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
MUA88_RS10235	COG2910	NAD(P)H-binding
MUA88_RS10240	COG1959	2 iron, 2 sulfur cluster binding
MUA88_RS10245	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
MUA88_RS10260	COG1705	Flagellar rod assembly protein muramidase FlgJ
MUA88_RS10260	COG3942	CHAP domain
MUA88_RS10275	COG0789	Transcriptional regulator
MUA88_RS10280	COG0596	Alpha beta hydrolase
MUA88_RS10285	COG2824	Alkylphosphonate utilization operon protein PhnA
MUA88_RS10295	COG1461	Dihydroxyacetone kinase
MUA88_RS10300	COG2376	Dihydroxyacetone kinase
MUA88_RS10305	COG0706	membrane insertase activity
MUA88_RS10315	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
MUA88_RS10320	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
MUA88_RS10325	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
MUA88_RS10330	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
MUA88_RS10335	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
MUA88_RS10340	COG0131	Imidazoleglycerol-phosphate dehydratase
MUA88_RS10350	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
MUA88_RS10355	COG0107	imidazoleglycerol-phosphate synthase activity
MUA88_RS10370	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
MUA88_RS10375	COG1012	belongs to the aldehyde dehydrogenase family
MUA88_RS10380	COG1510	regulation of RNA biosynthetic process
MUA88_RS10385	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
MUA88_RS10390	COG2258	MOSC domain
MUA88_RS10395	COG3527	Alpha-acetolactate decarboxylase
MUA88_RS10400	COG1785	Belongs to the alkaline phosphatase family
MUA88_RS10405	COG2814	Major facilitator Superfamily
MUA88_RS10410	COG2226	methyltransferase
MUA88_RS10415	COG1957	nucleoside hydrolase
MUA88_RS10420	COG1131	(ABC) transporter
MUA88_RS10425	COG0535	radical SAM domain protein
MUA88_RS10430	COG0535	radical SAM domain protein
MUA88_RS10440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
MUA88_RS10465	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
MUA88_RS10470	COG4221	oxidoreductase activity
MUA88_RS10480	COG3547	Transposase (IS116 IS110 IS902 family)
MUA88_RS10485	COG1028	Short-chain dehydrogenase reductase Sdr
MUA88_RS10495	COG0803	Belongs to the bacterial solute-binding protein 9 family
MUA88_RS10495	COG3443	Belongs to the bacterial solute-binding protein 9 family
MUA88_RS10500	COG2873	o-acetylhomoserine
MUA88_RS10505	COG0602	queuosine metabolic process
MUA88_RS10510	COG1328	CTP reductase activity
MUA88_RS10515	COG1028	Short-chain dehydrogenase reductase Sdr
MUA88_RS10520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
MUA88_RS10565	COG0626	cystathionine gamma-synthase activity
MUA88_RS10570	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
MUA88_RS10575	COG2272	Belongs to the type-B carboxylesterase lipase family
MUA88_RS10580	COG0733	neurotransmitter:sodium symporter activity
MUA88_RS10590	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
MUA88_RS10595	COG0574	Belongs to the PEP-utilizing enzyme family
MUA88_RS10595	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
MUA88_RS10600	COG1279	arginine transmembrane transporter activity
MUA88_RS10610	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
MUA88_RS10620	COG1683	Conserved Protein
MUA88_RS10635	COG1073	alpha beta
MUA88_RS10640	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
MUA88_RS10660	COG0518	GMP synthase (glutamine-hydrolyzing) activity
MUA88_RS10660	COG0519	Catalyzes the synthesis of GMP from XMP
MUA88_RS10665	COG0516	GMP reductase activity
MUA88_RS10665	COG0517	IMP dehydrogenase activity
MUA88_RS10670	COG2233	PERMEase
MUA88_RS10675	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
MUA88_RS10690	COG5183	chlorophyll binding
MUA88_RS10695	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
MUA88_RS10700	COG1823	symporter activity
MUA88_RS10705	COG0778	Nitroreductase
MUA88_RS10715	COG0450	alkyl hydroperoxide reductase
MUA88_RS10720	COG3634	alkyl hydroperoxide reductase activity
MUA88_RS10730	COG1464	Belongs to the NlpA lipoprotein family
MUA88_RS10740	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
MUA88_RS10745	COG2011	ABC-type metal ion transport system permease component
MUA88_RS10765	COG1473	amidohydrolase
MUA88_RS10775	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
MUA88_RS10785	COG0360	Binds together with S18 to 16S ribosomal RNA
MUA88_RS10790	COG0012	GTP binding
MUA88_RS10795	COG4481	Protein conserved in bacteria
MUA88_RS10800	COG0668	transmembrane transport
MUA88_RS10805	COG1475	DNA binding
MUA88_RS10810	COG0626	cystathionine gamma-synthase activity
MUA88_RS10815	COG0626	cystathionine gamma-synthase activity
MUA88_RS10820	COG0646	methionine synthase
MUA88_RS10820	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
MUA88_RS10825	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
MUA88_RS10835	COG0697	spore germination
MUA88_RS10865	COG0357	Ribosomal RNA small subunit methyltransferase G
MUA88_RS10875	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
MUA88_RS10880	COG0594	ribonuclease P activity