locus-tag class description JX000_RS00005 PF00308 Bacterial dnaA protein JX000_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix JX000_RS00005 PF11638 DnaA N-terminal domain JX000_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JX000_RS00010 PF02767 DNA polymerase III beta subunit, central domain JX000_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JX000_RS00020 PF02463 RecF/RecN/SMC N terminal domain JX000_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus JX000_RS00025 PF00204 DNA gyrase B JX000_RS00025 PF01751 Toprim domain JX000_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JX000_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JX000_RS00035 PF01256 Carbohydrate kinase JX000_RS00040 PF00221 Aromatic amino acid lyase JX000_RS00045 PF02403 Seryl-tRNA synthetase N-terminal domain JX000_RS00045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX000_RS00060 PF00561 alpha/beta hydrolase fold JX000_RS00070 PF01368 DHH family JX000_RS00070 PF02272 DHHA1 domain JX000_RS00075 PF03948 Ribosomal protein L9, C-terminal domain JX000_RS00075 PF01281 Ribosomal protein L9, N-terminal domain JX000_RS00080 PF00772 DnaB-like helicase N terminal domain JX000_RS00080 PF03796 DnaB-like helicase C terminal domain JX000_RS00085 PF00709 Adenylosuccinate synthetase JX000_RS00100 PF00072 Response regulator receiver domain JX000_RS00100 PF00486 Transcriptional regulatory protein, C terminal JX000_RS00105 PF00989 PAS fold JX000_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS00105 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS00105 PF00672 HAMP domain JX000_RS00110 PF07435 YycH protein JX000_RS00120 PF00753 Metallo-beta-lactamase superfamily JX000_RS00125 PF02590 Predicted SPOUT methyltransferase JX000_RS00135 PF04545 Sigma-70, region 4 JX000_RS00135 PF00140 Sigma-70 factor, region 1.2 JX000_RS00135 PF03979 Sigma-70 factor, region 1.1 JX000_RS00135 PF04542 Sigma-70 region 2 JX000_RS00135 PF04539 Sigma-70 region 3 JX000_RS00140 PF00271 Helicase conserved C-terminal domain JX000_RS00140 PF02151 UvrB/uvrC motif JX000_RS00140 PF12344 Ultra-violet resistance protein B JX000_RS00140 PF17757 UvrB interaction domain JX000_RS00140 PF04851 Type III restriction enzyme, res subunit JX000_RS00150 PF13476 AAA domain JX000_RS00175 PF01207 Dihydrouridine synthase (Dus) JX000_RS00185 PF06146 Phosphate-starvation-inducible E JX000_RS00190 PF12102 Domain of unknown function (DUF3578) JX000_RS00190 PF07728 AAA domain (dynein-related subfamily) JX000_RS00195 PF10117 McrBC 5-methylcytosine restriction system component JX000_RS00225 PF04650 YSIRK type signal peptide JX000_RS00235 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JX000_RS00240 PF03600 Citrate transporter JX000_RS00245 PF02525 Flavodoxin-like fold JX000_RS00250 PF07690 Major Facilitator Superfamily JX000_RS00255 PF07687 Peptidase dimerisation domain JX000_RS00255 PF01546 Peptidase family M20/M25/M40 JX000_RS00265 PF01209 ubiE/COQ5 methyltransferase family JX000_RS00290 PF04299 Putative FMN-binding domain JX000_RS00295 PF12464 Maltose acetyltransferase JX000_RS00295 PF00132 Bacterial transferase hexapeptide (six repeats) JX000_RS00300 PF05525 Branched-chain amino acid transport protein JX000_RS00305 PF00083 Sugar (and other) transporter JX000_RS00320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JX000_RS00320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JX000_RS00330 PF02863 Arginine repressor, C-terminal domain JX000_RS00330 PF01316 Arginine repressor, DNA binding domain JX000_RS00335 PF00916 Sulfate permease family JX000_RS00335 PF01740 STAS domain JX000_RS00355 PF07690 Major Facilitator Superfamily JX000_RS00370 PF00534 Glycosyl transferases group 1 JX000_RS00375 PF01043 SecA preprotein cross-linking domain JX000_RS00375 PF07516 SecA Wing and Scaffold domain JX000_RS00375 PF07517 SecA DEAD-like domain JX000_RS00385 PF16929 Accessory Sec system GspB-transporter JX000_RS00390 PF16993 Accessory Sec system protein Asp1 JX000_RS00395 PF00344 SecY translocase JX000_RS00400 PF00746 LPXTG cell wall anchor motif JX000_RS00420 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS00420 PF12911 N-terminal TM domain of oligopeptide transport permease C JX000_RS00425 PF00005 ABC transporter JX000_RS00430 PF00005 ABC transporter JX000_RS00445 PF02397 Bacterial sugar transferase JX000_RS00450 PF16363 GDP-mannose 4,6 dehydratase JX000_RS00460 PF07681 DoxX JX000_RS00465 PF07943 Penicillin-binding protein 5, C-terminal domain JX000_RS00465 PF00768 D-alanyl-D-alanine carboxypeptidase JX000_RS00470 PF13460 NAD(P)H-binding JX000_RS00475 PF02557 D-alanyl-D-alanine carboxypeptidase JX000_RS00480 PF02901 Pyruvate formate lyase-like JX000_RS00480 PF01228 Glycine radical JX000_RS00485 PF04055 Radical SAM superfamily JX000_RS00495 PF03606 C4-dicarboxylate anaerobic carrier JX000_RS00510 PF12857 TOBE-like domain JX000_RS00510 PF17850 CysA C-terminal regulatory domain JX000_RS00510 PF00005 ABC transporter JX000_RS00580 PF14449 Pre-toxin TG JX000_RS00590 PF14449 Pre-toxin TG JX000_RS00610 PF04507 Csa1 family JX000_RS00615 PF04507 Csa1 family JX000_RS00620 PF00245 Alkaline phosphatase JX000_RS00630 PF00857 Isochorismatase family JX000_RS00660 PF00486 Transcriptional regulatory protein, C terminal JX000_RS00660 PF00072 Response regulator receiver domain JX000_RS00665 PF00005 ABC transporter JX000_RS00675 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS00675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS00690 PF00005 ABC transporter JX000_RS00705 PF00106 short chain dehydrogenase JX000_RS00710 PF03824 High-affinity nickel-transport protein JX000_RS00715 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) JX000_RS00720 PF00892 EamA-like transporter family JX000_RS00725 PF00939 Sodium:sulfate symporter transmembrane region JX000_RS00740 PF01470 Pyroglutamyl peptidase JX000_RS00745 PF00581 Rhodanese-like domain JX000_RS00745 PF17773 UPF0176 acylphosphatase like domain JX000_RS00745 PF12368 Rhodanase C-terminal JX000_RS00750 PF08450 SMP-30/Gluconolactonase/LRE-like region JX000_RS00755 PF04264 YceI-like domain JX000_RS00765 PF12697 Alpha/beta hydrolase family JX000_RS00770 PF03606 C4-dicarboxylate anaerobic carrier JX000_RS00790 PF17760 UvrA interaction domain JX000_RS00790 PF17755 UvrA DNA-binding domain JX000_RS00795 PF04650 YSIRK type signal peptide JX000_RS00815 PF07690 Major Facilitator Superfamily JX000_RS00820 PF02872 5'-nucleotidase, C-terminal domain JX000_RS00820 PF00149 Calcineurin-like phosphoesterase JX000_RS00835 PF00005 ABC transporter JX000_RS00840 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS00845 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS00860 PF09023 Staphostatin B JX000_RS00865 PF14731 Staphopain proregion JX000_RS00865 PF05543 Staphopain peptidase C47 JX000_RS00880 PF01641 SelR domain JX000_RS00880 PF01625 Peptide methionine sulfoxide reductase JX000_RS00895 PF07690 Major Facilitator Superfamily JX000_RS00915 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JX000_RS00920 PF03176 MMPL family JX000_RS00930 PF02566 OsmC-like protein JX000_RS00935 PF01468 GA module JX000_RS00940 PF05257 CHAP domain JX000_RS00940 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JX000_RS00945 PF01061 ABC-2 type transporter JX000_RS00960 PF07687 Peptidase dimerisation domain JX000_RS00960 PF01546 Peptidase family M20/M25/M40 JX000_RS00975 PF03413 Peptidase propeptide and YPEB domain JX000_RS00975 PF02868 Thermolysin metallopeptidase, alpha-helical domain JX000_RS00975 PF01447 Thermolysin metallopeptidase, catalytic domain JX000_RS00975 PF07504 Fungalysin/Thermolysin Propeptide Motif JX000_RS00980 PF09587 Bacterial capsule synthesis protein PGA_cap JX000_RS00985 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JX000_RS00985 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JX000_RS00995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS00995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS00995 PF00205 Thiamine pyrophosphate enzyme, central domain JX000_RS01005 PF05908 Poly-gamma-glutamate hydrolase JX000_RS01015 PF00245 Alkaline phosphatase JX000_RS01025 PF00072 Response regulator receiver domain JX000_RS01025 PF00486 Transcriptional regulatory protein, C terminal JX000_RS01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS01035 PF00005 ABC transporter JX000_RS01065 PF01507 Phosphoadenosine phosphosulfate reductase family JX000_RS01070 PF00258 Flavodoxin JX000_RS01070 PF00175 Oxidoreductase NAD-binding domain JX000_RS01070 PF00667 FAD binding domain JX000_RS01075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JX000_RS01075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JX000_RS01080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX000_RS01085 PF14824 Sirohaem biosynthesis protein central JX000_RS01090 PF01925 Sulfite exporter TauE/SafE JX000_RS01095 PF01747 ATP-sulfurylase JX000_RS01095 PF14306 PUA-like domain JX000_RS01105 PF07687 Peptidase dimerisation domain JX000_RS01105 PF01546 Peptidase family M20/M25/M40 JX000_RS01110 PF05257 CHAP domain JX000_RS01115 PF03477 ATP cone domain JX000_RS01115 PF13597 Anaerobic ribonucleoside-triphosphate reductase JX000_RS01125 PF03605 Anaerobic c4-dicarboxylate membrane transporter JX000_RS01130 PF02028 BCCT, betaine/carnitine/choline family transporter JX000_RS01140 PF00171 Aldehyde dehydrogenase family JX000_RS01145 PF05199 GMC oxidoreductase JX000_RS01145 PF00732 GMC oxidoreductase JX000_RS01155 PF07690 Major Facilitator Superfamily JX000_RS01170 PF00501 AMP-binding enzyme JX000_RS01170 PF13193 AMP-binding enzyme C-terminal domain JX000_RS01175 PF02896 PEP-utilising enzyme, TIM barrel domain JX000_RS01175 PF00391 PEP-utilising enzyme, mobile domain JX000_RS01175 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JX000_RS01180 PF03618 Kinase/pyrophosphorylase JX000_RS01185 PF06039 Malate:quinone oxidoreductase (Mqo) JX000_RS01190 PF07702 UTRA domain JX000_RS01190 PF00392 Bacterial regulatory proteins, gntR family JX000_RS01200 PF00232 Glycosyl hydrolase family 1 JX000_RS01215 PF01494 FAD binding domain JX000_RS01220 PF00274 Fructose-bisphosphate aldolase class-I JX000_RS01235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX000_RS01235 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS01255 PF00202 Aminotransferase class-III JX000_RS01260 PF13520 Amino acid permease JX000_RS01270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS01270 PF03466 LysR substrate binding domain JX000_RS01275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JX000_RS01275 PF00056 lactate/malate dehydrogenase, NAD binding domain JX000_RS01280 PF00205 Thiamine pyrophosphate enzyme, central domain JX000_RS01280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS01280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS01285 PF03306 Alpha-acetolactate decarboxylase JX000_RS01290 PF08546 Ketopantoate reductase PanE/ApbA C terminal JX000_RS01290 PF02558 Ketopantoate reductase PanE/ApbA JX000_RS01295 PF02548 Ketopantoate hydroxymethyltransferase JX000_RS01300 PF02569 Pantoate-beta-alanine ligase JX000_RS01305 PF02261 Aspartate decarboxylase JX000_RS01345 PF02677 Epoxyqueuosine reductase QueH JX000_RS01355 PF01180 Dihydroorotate dehydrogenase JX000_RS01360 PF03881 Fructosamine kinase JX000_RS01365 PF00561 alpha/beta hydrolase fold JX000_RS01375 PF00106 short chain dehydrogenase JX000_RS01380 PF00440 Bacterial regulatory proteins, tetR family JX000_RS01400 PF05979 Bacterial protein of unknown function (DUF896) JX000_RS01410 PF00324 Amino acid permease JX000_RS01420 PF03976 Polyphosphate kinase 2 (PPK2) JX000_RS01435 PF01593 Flavin containing amine oxidoreductase JX000_RS01440 PF00155 Aminotransferase class I and II JX000_RS01445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS01445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS01450 PF00403 Heavy-metal-associated domain JX000_RS01455 PF00403 Heavy-metal-associated domain JX000_RS01470 PF12464 Maltose acetyltransferase JX000_RS01470 PF14602 Hexapeptide repeat of succinyl-transferase JX000_RS01470 PF00132 Bacterial transferase hexapeptide (six repeats) JX000_RS01475 PF00171 Aldehyde dehydrogenase family JX000_RS01485 PF07664 Ferrous iron transport protein B C terminus JX000_RS01485 PF02421 Ferrous iron transport protein B JX000_RS01485 PF17910 FeoB cytosolic helical domain JX000_RS01485 PF07670 Nucleoside recognition JX000_RS01505 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JX000_RS01505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JX000_RS01510 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JX000_RS01510 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JX000_RS01515 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JX000_RS01520 PF01476 LysM domain JX000_RS01520 PF05257 CHAP domain JX000_RS01530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS01530 PF03466 LysR substrate binding domain JX000_RS01535 PF03788 LrgA family JX000_RS01540 PF04172 LrgB-like family JX000_RS01545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS01545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS01545 PF00205 Thiamine pyrophosphate enzyme, central domain JX000_RS01550 PF00367 phosphotransferase system, EIIB JX000_RS01550 PF02378 Phosphotransferase system, EIIC JX000_RS01550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JX000_RS01570 PF00085 Thioredoxin JX000_RS01575 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JX000_RS01575 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JX000_RS01580 PF07859 alpha/beta hydrolase fold JX000_RS01590 PF08245 Mur ligase middle domain JX000_RS01595 PF14102 Capsule biosynthesis CapC JX000_RS01600 PF09587 Bacterial capsule synthesis protein PGA_cap JX000_RS01620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JX000_RS01620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX000_RS01630 PF03315 Serine dehydratase beta chain JX000_RS01630 PF01842 ACT domain JX000_RS01635 PF03313 Serine dehydratase alpha chain JX000_RS01650 PF04203 Sortase domain JX000_RS01660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS01660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS01665 PF00881 Nitroreductase family JX000_RS01670 PF00171 Aldehyde dehydrogenase family JX000_RS01690 PF05154 TM2 domain JX000_RS01695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JX000_RS01705 PF02567 Phenazine biosynthesis-like protein JX000_RS01710 PF03466 LysR substrate binding domain JX000_RS01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS01715 PF00171 Aldehyde dehydrogenase family JX000_RS01730 PF06874 Firmicute fructose-1,6-bisphosphatase JX000_RS01735 PF09335 SNARE associated Golgi protein JX000_RS01740 PF00899 ThiF family JX000_RS01745 PF05690 Thiazole biosynthesis protein ThiG JX000_RS01755 PF01266 FAD dependent oxidoreductase JX000_RS01760 PF02581 Thiamine monophosphate synthase JX000_RS01765 PF07690 Major Facilitator Superfamily JX000_RS01780 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) JX000_RS01785 PF04607 Region found in RelA / SpoT proteins JX000_RS01795 PF07729 FCD domain JX000_RS01795 PF00392 Bacterial regulatory proteins, gntR family JX000_RS01800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JX000_RS01800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX000_RS01805 PF02447 GntP family permease JX000_RS01810 PF00483 Nucleotidyl transferase JX000_RS01820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX000_RS01820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX000_RS01820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX000_RS01820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX000_RS01825 PF00534 Glycosyl transferases group 1 JX000_RS01825 PF09318 Glycosyl transferase 1 domain A JX000_RS01830 PF00293 NUDIX domain JX000_RS01835 PF12344 Ultra-violet resistance protein B JX000_RS01835 PF04851 Type III restriction enzyme, res subunit JX000_RS01835 PF17757 UvrB interaction domain JX000_RS01835 PF00271 Helicase conserved C-terminal domain JX000_RS01835 PF02151 UvrB/uvrC motif JX000_RS01840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX000_RS01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS01845 PF00676 Dehydrogenase E1 component JX000_RS01850 PF02779 Transketolase, pyrimidine binding domain JX000_RS01850 PF02780 Transketolase, C-terminal domain JX000_RS01855 PF02817 e3 binding domain JX000_RS01855 PF00364 Biotin-requiring enzyme JX000_RS01855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JX000_RS01870 PF00106 short chain dehydrogenase JX000_RS01875 PF07687 Peptidase dimerisation domain JX000_RS01875 PF01546 Peptidase family M20/M25/M40 JX000_RS01880 PF02503 Polyphosphate kinase middle domain JX000_RS01880 PF13090 Polyphosphate kinase C-terminal domain 2 JX000_RS01880 PF17941 Polyphosphate kinase C-terminal domain 1 JX000_RS01880 PF13089 Polyphosphate kinase N-terminal domain JX000_RS01885 PF02541 Ppx/GppA phosphatase family JX000_RS01890 PF03806 AbgT putative transporter family JX000_RS01905 PF05343 M42 glutamyl aminopeptidase JX000_RS01910 PF06998 Protein of unknown function (DUF1307) JX000_RS01915 PF01451 Low molecular weight phosphotyrosine protein phosphatase JX000_RS01920 PF02040 Arsenical pump membrane protein JX000_RS01925 PF01022 Bacterial regulatory protein, arsR family JX000_RS01930 PF01645 Conserved region in glutamate synthase JX000_RS01945 PF00005 ABC transporter JX000_RS01950 PF03649 Uncharacterised protein family (UPF0014) JX000_RS01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS01955 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS01960 PF00072 Response regulator receiver domain JX000_RS01960 PF00486 Transcriptional regulatory protein, C terminal JX000_RS01965 PF07690 Major Facilitator Superfamily JX000_RS01970 PF00135 Carboxylesterase family JX000_RS01975 PF13520 Amino acid permease JX000_RS01980 PF08818 Domain of unknown function (DU1801) JX000_RS01990 PF00005 ABC transporter JX000_RS01990 PF00571 CBS domain JX000_RS01995 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JX000_RS02005 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02010 PF04172 LrgB-like family JX000_RS02015 PF03788 LrgA family JX000_RS02020 PF07690 Major Facilitator Superfamily JX000_RS02025 PF02558 Ketopantoate reductase PanE/ApbA JX000_RS02025 PF08546 Ketopantoate reductase PanE/ApbA C terminal JX000_RS02045 PF02096 60Kd inner membrane protein JX000_RS02055 PF13520 Amino acid permease JX000_RS02065 PF00324 Amino acid permease JX000_RS02070 PF00149 Calcineurin-like phosphoesterase JX000_RS02085 PF07690 Major Facilitator Superfamily JX000_RS02095 PF02595 Glycerate kinase family JX000_RS02110 PF01545 Cation efflux family JX000_RS02110 PF16916 Dimerisation domain of Zinc Transporter JX000_RS02120 PF00300 Histidine phosphatase superfamily (branch 1) JX000_RS02130 PF07690 Major Facilitator Superfamily JX000_RS02135 PF00497 Bacterial extracellular solute-binding proteins, family 3 JX000_RS02140 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02145 PF00005 ABC transporter JX000_RS02150 PF02388 FemAB family JX000_RS02165 PF01297 Zinc-uptake complex component A periplasmic JX000_RS02180 PF00583 Acetyltransferase (GNAT) family JX000_RS02185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JX000_RS02195 PF04324 BFD-like [2Fe-2S] binding domain JX000_RS02195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JX000_RS02195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JX000_RS02195 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS02195 PF18267 Rubredoxin NAD+ reductase C-terminal domain JX000_RS02200 PF00355 Rieske [2Fe-2S] domain JX000_RS02205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX000_RS02210 PF01568 Molydopterin dinucleotide binding domain JX000_RS02210 PF00384 Molybdopterin oxidoreductase JX000_RS02210 PF14710 Respiratory nitrate reductase alpha N-terminal JX000_RS02215 PF14711 Respiratory nitrate reductase beta C-terminal JX000_RS02215 PF13247 4Fe-4S dicluster domain JX000_RS02225 PF02665 Nitrate reductase gamma subunit JX000_RS02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS02235 PF07730 Histidine kinase JX000_RS02240 PF00196 Bacterial regulatory proteins, luxR family JX000_RS02240 PF00072 Response regulator receiver domain JX000_RS02245 PF07690 Major Facilitator Superfamily JX000_RS02250 PF00011 Hsp20/alpha crystallin family JX000_RS02255 PF01047 MarR family JX000_RS02260 PF00881 Nitroreductase family JX000_RS02270 PF00375 Sodium:dicarboxylate symporter family JX000_RS02285 PF12833 Helix-turn-helix domain JX000_RS02295 PF00367 phosphotransferase system, EIIB JX000_RS02295 PF02378 Phosphotransferase system, EIIC JX000_RS02305 PF00440 Bacterial regulatory proteins, tetR family JX000_RS02345 PF01554 MatE JX000_RS02370 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS02375 PF00583 Acetyltransferase (GNAT) family JX000_RS02380 PF00107 Zinc-binding dehydrogenase JX000_RS02380 PF08240 Alcohol dehydrogenase GroES-like domain JX000_RS02385 PF09375 Imelysin JX000_RS02400 PF00902 Sec-independent protein translocase protein (TatC) JX000_RS02405 PF02416 mttA/Hcf106 family JX000_RS02415 PF00535 Glycosyl transferase family 2 JX000_RS02415 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JX000_RS02425 PF00535 Glycosyl transferase family 2 JX000_RS02425 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JX000_RS02430 PF02652 L-lactate permease JX000_RS02435 PF13439 Glycosyltransferase Family 4 JX000_RS02435 PF00534 Glycosyl transferases group 1 JX000_RS02440 PF06039 Malate:quinone oxidoreductase (Mqo) JX000_RS02450 PF04397 LytTr DNA-binding domain JX000_RS02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS02455 PF00672 HAMP domain JX000_RS02455 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS02460 PF00486 Transcriptional regulatory protein, C terminal JX000_RS02460 PF00072 Response regulator receiver domain JX000_RS02465 PF02687 FtsX-like permease family JX000_RS02470 PF00005 ABC transporter JX000_RS02480 PF12802 MarR family JX000_RS02505 PF07690 Major Facilitator Superfamily JX000_RS02530 PF01544 CorA-like Mg2+ transporter protein JX000_RS02535 PF01070 FMN-dependent dehydrogenase JX000_RS02540 PF03616 Sodium/glutamate symporter JX000_RS02545 PF03551 Transcriptional regulator PadR-like family JX000_RS02560 PF02245 Methylpurine-DNA glycosylase (MPG) JX000_RS02570 PF01381 Helix-turn-helix JX000_RS02580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JX000_RS02580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX000_RS02585 PF13732 Domain of unknown function (DUF4162) JX000_RS02585 PF00005 ABC transporter JX000_RS02595 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JX000_RS02600 PF01263 Aldose 1-epimerase JX000_RS02605 PF03475 3-alpha domain JX000_RS02605 PF03473 MOSC domain JX000_RS02610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JX000_RS02615 PF02517 CPBP intramembrane metalloprotease JX000_RS02620 PF00491 Arginase family JX000_RS02625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS02625 PF03466 LysR substrate binding domain JX000_RS02630 PF17392 Urocanase C-terminal domain JX000_RS02630 PF01175 Urocanase Rossmann-like domain JX000_RS02630 PF17391 Urocanase N-terminal domain JX000_RS02635 PF01979 Amidohydrolase family JX000_RS02640 PF07687 Peptidase dimerisation domain JX000_RS02640 PF01546 Peptidase family M20/M25/M40 JX000_RS02665 PF01380 SIS domain JX000_RS02665 PF01418 Helix-turn-helix domain, rpiR family JX000_RS02670 PF00367 phosphotransferase system, EIIB JX000_RS02670 PF02378 Phosphotransferase system, EIIC JX000_RS02685 PF13419 Haloacid dehalogenase-like hydrolase JX000_RS02705 PF00324 Amino acid permease JX000_RS02715 PF02378 Phosphotransferase system, EIIC JX000_RS02715 PF00367 phosphotransferase system, EIIB JX000_RS02720 PF01380 SIS domain JX000_RS02735 PF02517 CPBP intramembrane metalloprotease JX000_RS02740 PF08279 HTH domain JX000_RS02740 PF13280 WYL domain JX000_RS02750 PF03816 Cell envelope-related transcriptional attenuator domain JX000_RS02755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JX000_RS02755 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JX000_RS02755 PF01568 Molydopterin dinucleotide binding domain JX000_RS02755 PF12838 4Fe-4S dicluster domain JX000_RS02755 PF00384 Molybdopterin oxidoreductase JX000_RS02770 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JX000_RS02770 PF13457 GW (Gly-Tryp) dipeptide domain JX000_RS02775 PF01494 FAD binding domain JX000_RS02780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS02780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS02785 PF00893 Small Multidrug Resistance protein JX000_RS02790 PF00893 Small Multidrug Resistance protein JX000_RS02795 PF05257 CHAP domain JX000_RS02805 PF02558 Ketopantoate reductase PanE/ApbA JX000_RS02805 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain JX000_RS02810 PF03553 Na+/H+ antiporter family JX000_RS02815 PF05257 CHAP domain JX000_RS02840 PF01774 UreD urease accessory protein JX000_RS02845 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX000_RS02850 PF01730 UreF JX000_RS02855 PF05194 UreE urease accessory protein, C-terminal domain JX000_RS02855 PF02814 UreE urease accessory protein, N-terminal domain JX000_RS02860 PF01979 Amidohydrolase family JX000_RS02860 PF00449 Urease alpha-subunit, N-terminal domain JX000_RS02865 PF00699 Urease beta subunit JX000_RS02870 PF00547 Urease, gamma subunit JX000_RS02875 PF03253 Urea transporter JX000_RS02880 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02885 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02890 PF00497 Bacterial extracellular solute-binding proteins, family 3 JX000_RS02895 PF00005 ABC transporter JX000_RS02900 PF02770 Acyl-CoA dehydrogenase, middle domain JX000_RS02900 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JX000_RS02900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JX000_RS02905 PF01497 Periplasmic binding protein JX000_RS02915 PF02632 BioY family JX000_RS02925 PF02634 FdhD/NarQ family JX000_RS02935 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS02940 PF00005 ABC transporter JX000_RS02940 PF03459 TOBE domain JX000_RS02945 PF00899 ThiF family JX000_RS02950 PF00994 Probable molybdopterin binding domain JX000_RS02955 PF01967 MoaC family JX000_RS02960 PF03453 MoeA N-terminal region (domain I and II) JX000_RS02960 PF03454 MoeA C-terminal region (domain IV) JX000_RS02960 PF00994 Probable molybdopterin binding domain JX000_RS02965 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JX000_RS02970 PF02391 MoaE protein JX000_RS02975 PF02597 ThiS family JX000_RS02980 PF12804 MobA-like NTP transferase domain JX000_RS02985 PF04055 Radical SAM superfamily JX000_RS02985 PF06463 Molybdenum Cofactor Synthesis C JX000_RS02990 PF01047 MarR family JX000_RS02995 PF07690 Major Facilitator Superfamily JX000_RS02995 PF00083 Sugar (and other) transporter JX000_RS03000 PF01047 MarR family JX000_RS03010 PF02388 FemAB family JX000_RS03015 PF00873 AcrB/AcrD/AcrF family JX000_RS03040 PF06800 Sugar transport protein JX000_RS03050 PF01131 DNA topoisomerase JX000_RS03050 PF01751 Toprim domain JX000_RS03055 PF00860 Permease family JX000_RS03065 PF00338 Ribosomal protein S10p/S20e JX000_RS03070 PF00297 Ribosomal protein L3 JX000_RS03075 PF00573 Ribosomal protein L4/L1 family JX000_RS03080 PF00276 Ribosomal protein L23 JX000_RS03085 PF03947 Ribosomal Proteins L2, C-terminal domain JX000_RS03085 PF00181 Ribosomal Proteins L2, RNA binding domain JX000_RS03090 PF00203 Ribosomal protein S19 JX000_RS03095 PF00237 Ribosomal protein L22p/L17e JX000_RS03100 PF00189 Ribosomal protein S3, C-terminal domain JX000_RS03100 PF07650 KH domain JX000_RS03105 PF00252 Ribosomal protein L16p/L10e JX000_RS03110 PF00831 Ribosomal L29 protein JX000_RS03115 PF00366 Ribosomal protein S17 JX000_RS03120 PF00238 Ribosomal protein L14p/L23e JX000_RS03125 PF00467 KOW motif JX000_RS03125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JX000_RS03130 PF00673 ribosomal L5P family C-terminus JX000_RS03130 PF00281 Ribosomal protein L5 JX000_RS03135 PF00253 Ribosomal protein S14p/S29e JX000_RS03140 PF00410 Ribosomal protein S8 JX000_RS03145 PF00347 Ribosomal protein L6 JX000_RS03150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JX000_RS03155 PF00333 Ribosomal protein S5, N-terminal domain JX000_RS03155 PF03719 Ribosomal protein S5, C-terminal domain JX000_RS03160 PF00327 Ribosomal protein L30p/L7e JX000_RS03165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JX000_RS03170 PF00344 SecY translocase JX000_RS03175 PF05191 Adenylate kinase, active site lid JX000_RS03180 PF01176 Translation initiation factor 1A / IF-1 JX000_RS03185 PF00444 Ribosomal protein L36 JX000_RS03190 PF00416 Ribosomal protein S13/S18 JX000_RS03195 PF00411 Ribosomal protein S11 JX000_RS03200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JX000_RS03200 PF01000 RNA polymerase Rpb3/RpoA insert domain JX000_RS03200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JX000_RS03205 PF01196 Ribosomal protein L17 JX000_RS03210 PF00005 ABC transporter JX000_RS03215 PF00005 ABC transporter JX000_RS03220 PF02361 Cobalt transport protein JX000_RS03225 PF01416 tRNA pseudouridine synthase JX000_RS03230 PF00572 Ribosomal protein L13 JX000_RS03235 PF00380 Ribosomal protein S9/S16 JX000_RS03245 PF13411 MerR HTH family regulatory protein JX000_RS03250 PF02146 Sir2 family JX000_RS03255 PF08220 DeoR-like helix-turn-helix domain JX000_RS03255 PF00455 DeoR C terminal sensor domain JX000_RS03260 PF02502 Ribose/Galactose Isomerase JX000_RS03265 PF02502 Ribose/Galactose Isomerase JX000_RS03270 PF00294 pfkB family carbohydrate kinase JX000_RS03275 PF01791 DeoC/LacD family aldolase JX000_RS03280 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JX000_RS03285 PF02378 Phosphotransferase system, EIIC JX000_RS03285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JX000_RS03290 PF00232 Glycosyl hydrolase family 1 JX000_RS03300 PF00296 Luciferase-like monooxygenase JX000_RS03305 PF00107 Zinc-binding dehydrogenase JX000_RS03305 PF16884 N-terminal domain of oxidoreductase JX000_RS03310 PF08240 Alcohol dehydrogenase GroES-like domain JX000_RS03310 PF00107 Zinc-binding dehydrogenase JX000_RS03315 PF02028 BCCT, betaine/carnitine/choline family transporter JX000_RS03330 PF03780 Asp23 family, cell envelope-related function JX000_RS03335 PF04183 IucA / IucC family JX000_RS03335 PF06276 Ferric iron reductase FhuF-like transporter JX000_RS03340 PF05977 Transmembrane secretion effector JX000_RS03345 PF06276 Ferric iron reductase FhuF-like transporter JX000_RS03345 PF04183 IucA / IucC family JX000_RS03350 PF01168 Alanine racemase, N-terminal domain JX000_RS03355 PF01497 Periplasmic binding protein JX000_RS03360 PF01032 FecCD transport family JX000_RS03365 PF01032 FecCD transport family JX000_RS03370 PF07670 Nucleoside recognition JX000_RS03375 PF03992 Antibiotic biosynthesis monooxygenase JX000_RS03385 PF04307 LexA-binding, inner membrane-associated putative hydrolase JX000_RS03390 PF01704 UTP--glucose-1-phosphate uridylyltransferase JX000_RS03395 PF03006 Haemolysin-III related JX000_RS03400 PF07690 Major Facilitator Superfamily JX000_RS03405 PF17080 Multidrug Resistance efflux pump JX000_RS03410 PF07690 Major Facilitator Superfamily JX000_RS03415 PF10609 NUBPL iron-transfer P-loop NTPase JX000_RS03465 PF00491 Arginase family JX000_RS03470 PF02457 DisA bacterial checkpoint controller nucleotide-binding JX000_RS03480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JX000_RS03480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JX000_RS03480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JX000_RS03480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JX000_RS03485 PF08125 Mannitol dehydrogenase C-terminal domain JX000_RS03485 PF01232 Mannitol dehydrogenase Rossmann domain JX000_RS03490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JX000_RS03495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JX000_RS03495 PF00874 PRD domain JX000_RS03495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JX000_RS03495 PF05043 Mga helix-turn-helix domain JX000_RS03495 PF08279 HTH domain JX000_RS03500 PF02378 Phosphotransferase system, EIIC JX000_RS03500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JX000_RS03505 PF01380 SIS domain JX000_RS03520 PF00149 Calcineurin-like phosphoesterase JX000_RS03525 PF01545 Cation efflux family JX000_RS03525 PF16916 Dimerisation domain of Zinc Transporter JX000_RS03530 PF01022 Bacterial regulatory protein, arsR family JX000_RS03535 PF13460 NAD(P)H-binding JX000_RS03540 PF01238 Phosphomannose isomerase type I JX000_RS03560 PF00210 Ferritin-like domain JX000_RS03565 PF01048 Phosphorylase superfamily JX000_RS03570 PF01791 DeoC/LacD family aldolase JX000_RS03575 PF00591 Glycosyl transferase family, a/b domain JX000_RS03575 PF02885 Glycosyl transferase family, helical bundle domain JX000_RS03575 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JX000_RS03580 PF01676 Metalloenzyme superfamily JX000_RS03590 PF02664 S-Ribosylhomocysteinase (LuxS) JX000_RS03610 PF03630 Fumble JX000_RS03620 PF05066 HB1, ASXL, restriction endonuclease HTH domain JX000_RS03625 PF00117 Glutamine amidotransferase class-I JX000_RS03625 PF06418 CTP synthase N-terminus JX000_RS03635 PF01116 Fructose-bisphosphate aldolase class-II JX000_RS03640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JX000_RS03650 PF00171 Aldehyde dehydrogenase family JX000_RS03655 PF07497 Rho termination factor, RNA-binding domain JX000_RS03655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX000_RS03655 PF07498 Rho termination factor, N-terminal domain JX000_RS03660 PF01197 Ribosomal protein L31 JX000_RS03665 PF00265 Thymidine kinase JX000_RS03670 PF00472 RF-1 domain JX000_RS03670 PF03462 PCRF domain JX000_RS03675 PF05175 Methyltransferase small domain JX000_RS03675 PF17827 PrmC N-terminal domain JX000_RS03680 PF03481 Putative GTP-binding controlling metal-binding JX000_RS03680 PF01300 Telomere recombination JX000_RS03685 PF01451 Low molecular weight phosphotyrosine protein phosphatase JX000_RS03690 PF04260 Protein of unknown function (DUF436) JX000_RS03695 PF00464 Serine hydroxymethyltransferase JX000_RS03705 PF02350 UDP-N-acetylglucosamine 2-epimerase JX000_RS03715 PF00119 ATP synthase A chain JX000_RS03720 PF00137 ATP synthase subunit C JX000_RS03725 PF00430 ATP synthase B/B' CF(0) JX000_RS03730 PF00213 ATP synthase delta (OSCP) subunit JX000_RS03735 PF02874 ATP synthase alpha/beta family, beta-barrel domain JX000_RS03735 PF00306 ATP synthase alpha/beta chain, C terminal domain JX000_RS03735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX000_RS03740 PF00231 ATP synthase JX000_RS03745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JX000_RS03745 PF02874 ATP synthase alpha/beta family, beta-barrel domain JX000_RS03750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JX000_RS03750 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JX000_RS03760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JX000_RS03765 PF07977 FabA-like domain JX000_RS03775 PF00436 Single-strand binding protein family JX000_RS03780 PF06737 Transglycosylase-like domain JX000_RS03785 PF03070 TENA/THI-4/PQQC family JX000_RS03790 PF08543 Phosphomethylpyrimidine kinase JX000_RS03795 PF02110 Hydroxyethylthiazole kinase family JX000_RS03800 PF02581 Thiamine monophosphate synthase JX000_RS03805 PF02096 60Kd inner membrane protein JX000_RS03810 PF01966 HD domain JX000_RS03815 PF13091 PLD-like domain JX000_RS03815 PF13396 Phospholipase_D-nuclease N-terminal JX000_RS03820 PF02583 Metal-sensitive transcriptional repressor JX000_RS03835 PF01098 Cell cycle protein JX000_RS03840 PF01820 D-ala D-ala ligase N-terminus JX000_RS03840 PF07478 D-ala D-ala ligase C-terminus JX000_RS03845 PF08245 Mur ligase middle domain JX000_RS03845 PF02875 Mur ligase family, glutamate ligase domain JX000_RS03845 PF01225 Mur ligase family, catalytic domain JX000_RS03850 PF00271 Helicase conserved C-terminal domain JX000_RS03850 PF00270 DEAD/DEAH box helicase JX000_RS03860 PF03703 Bacterial PH domain JX000_RS03865 PF03703 Bacterial PH domain JX000_RS03870 PF01648 4'-phosphopantetheinyl transferase superfamily JX000_RS03875 PF00842 Alanine racemase, C-terminal domain JX000_RS03875 PF01168 Alanine racemase, N-terminal domain JX000_RS03885 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JX000_RS03890 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain JX000_RS03890 PF07228 Stage II sporulation protein E (SpoIIE) JX000_RS03895 PF01740 STAS domain JX000_RS03900 PF13581 Histidine kinase-like ATPase domain JX000_RS03905 PF04545 Sigma-70, region 4 JX000_RS03905 PF04539 Sigma-70 region 3 JX000_RS03905 PF04542 Sigma-70 region 2 JX000_RS03910 PF16921 Tex protein YqgF-like domain JX000_RS03910 PF09371 Tex-like protein N-terminal domain JX000_RS03910 PF00575 S1 RNA binding domain JX000_RS03910 PF17674 HHH domain JX000_RS03915 PF10263 SprT-like family JX000_RS03915 PF17283 SprT-like zinc ribbon domain JX000_RS03950 PF00694 Aconitase C-terminal domain JX000_RS03955 PF00330 Aconitase family (aconitate hydratase) JX000_RS03960 PF00180 Isocitrate/isopropylmalate dehydrogenase JX000_RS03965 PF08502 LeuA allosteric (dimerisation) domain JX000_RS03965 PF00682 HMGL-like JX000_RS03970 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JX000_RS03970 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JX000_RS03980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS03980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS03980 PF00205 Thiamine pyrophosphate enzyme, central domain JX000_RS03985 PF00920 Dehydratase family JX000_RS03990 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JX000_RS03995 PF00814 Glycoprotease family JX000_RS04000 PF00583 Acetyltransferase (GNAT) family JX000_RS04005 PF00814 Glycoprotease family JX000_RS04010 PF00488 MutS domain V JX000_RS04010 PF01624 MutS domain I JX000_RS04010 PF05192 MutS domain III JX000_RS04010 PF05190 MutS family domain IV JX000_RS04010 PF05188 MutS domain II JX000_RS04015 PF16326 ABC transporter C-terminal domain JX000_RS04015 PF12848 ABC transporter JX000_RS04015 PF00005 ABC transporter JX000_RS04020 PF06971 Putative DNA-binding protein N-terminus JX000_RS04020 PF02629 CoA binding domain JX000_RS04030 PF04143 Sulphur transport JX000_RS04035 PF01206 Sulfurtransferase TusA JX000_RS04040 PF00356 Bacterial regulatory proteins, lacI family JX000_RS04040 PF13407 Periplasmic binding protein domain JX000_RS04045 PF00251 Glycosyl hydrolases family 32 N-terminal domain JX000_RS04045 PF08244 Glycosyl hydrolases family 32 C terminal JX000_RS04050 PF00294 pfkB family carbohydrate kinase JX000_RS04055 PF00072 Response regulator receiver domain JX000_RS04055 PF04397 LytTr DNA-binding domain JX000_RS04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS04060 PF00989 PAS fold JX000_RS04060 PF17203 Single cache domain 3 JX000_RS04060 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JX000_RS04070 PF04647 Accessory gene regulator B JX000_RS04075 PF05372 Delta lysin family JX000_RS04080 PF05372 Delta lysin family JX000_RS04085 PF00795 Carbon-nitrogen hydrolase JX000_RS04100 PF02517 CPBP intramembrane metalloprotease JX000_RS04105 PF00166 Chaperonin 10 Kd subunit JX000_RS04110 PF00118 TCP-1/cpn60 chaperonin family JX000_RS04135 PF00392 Bacterial regulatory proteins, gntR family JX000_RS04140 PF00005 ABC transporter JX000_RS04150 PF00005 ABC transporter JX000_RS04195 PF02899 Phage integrase, N-terminal SAM-like domain JX000_RS04195 PF00589 Phage integrase family JX000_RS04200 PF00589 Phage integrase family JX000_RS04220 PF01022 Bacterial regulatory protein, arsR family JX000_RS04240 PF10282 Lactonase, 7-bladed beta-propeller JX000_RS04245 PF00171 Aldehyde dehydrogenase family JX000_RS04250 PF02833 DHHA2 domain JX000_RS04250 PF01368 DHH family JX000_RS04255 PF00857 Isochorismatase family JX000_RS04265 PF00800 Prephenate dehydratase JX000_RS04270 PF02898 Nitric oxide synthase, oxygenase domain JX000_RS04275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JX000_RS04275 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JX000_RS04275 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JX000_RS04280 PF02540 NAD synthase JX000_RS04285 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JX000_RS04295 PF00206 Lyase JX000_RS04295 PF10397 Adenylosuccinate lyase C-terminus JX000_RS04300 PF01371 Trp repressor protein JX000_RS04305 PF01884 PcrB family JX000_RS04310 PF13361 UvrD-like helicase C-terminal domain JX000_RS04310 PF00580 UvrD/REP helicase N-terminal domain JX000_RS04315 PF00533 BRCA1 C Terminus (BRCT) domain JX000_RS04315 PF01653 NAD-dependent DNA ligase adenylation domain JX000_RS04315 PF03120 NAD-dependent DNA ligase OB-fold domain JX000_RS04315 PF12826 Helix-hairpin-helix motif JX000_RS04315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JX000_RS04325 PF00474 Sodium:solute symporter family JX000_RS04330 PF02686 Glu-tRNAGln amidotransferase C subunit JX000_RS04335 PF01425 Amidase JX000_RS04340 PF02637 GatB domain JX000_RS04340 PF02934 GatB/GatE catalytic domain JX000_RS04345 PF00781 Diacylglycerol kinase catalytic domain JX000_RS04350 PF05958 tRNA (Uracil-5-)-methyltransferase JX000_RS04360 PF00817 impB/mucB/samB family JX000_RS04360 PF11799 impB/mucB/samB family C-terminal domain JX000_RS04370 PF00210 Ferritin-like domain JX000_RS04375 PF08245 Mur ligase middle domain JX000_RS04375 PF08353 Domain of unknown function (DUF1727) JX000_RS04380 PF07685 CobB/CobQ-like glutamine amidotransferase domain JX000_RS04385 PF06081 Aromatic acid exporter family member 1 JX000_RS04390 PF00557 Metallopeptidase family M24 JX000_RS04405 PF07730 Histidine kinase JX000_RS04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS04410 PF00196 Bacterial regulatory proteins, luxR family JX000_RS04410 PF00072 Response regulator receiver domain JX000_RS04415 PF03631 Virulence factor BrkB JX000_RS04425 PF01451 Low molecular weight phosphotyrosine protein phosphatase JX000_RS04430 PF06569 Protein of unknown function (DUF1128) JX000_RS04435 PF02073 Thermophilic metalloprotease (M29) JX000_RS04445 PF08756 YfkB-like domain JX000_RS04445 PF04055 Radical SAM superfamily JX000_RS04455 PF01965 DJ-1/PfpI family JX000_RS04460 PF00912 Transglycosylase JX000_RS04465 PF02631 RecX family JX000_RS04475 PF01476 LysM domain JX000_RS04475 PF00005 ABC transporter JX000_RS04485 PF04307 LexA-binding, inner membrane-associated putative hydrolase JX000_RS04490 PF00730 HhH-GPD superfamily base excision DNA repair protein JX000_RS04490 PF14815 NUDIX domain JX000_RS04495 PF04167 Protein of unknown function (DUF402) JX000_RS04500 PF00664 ABC transporter transmembrane region JX000_RS04500 PF00005 ABC transporter JX000_RS04505 PF06081 Aromatic acid exporter family member 1 JX000_RS04510 PF00202 Aminotransferase class-III JX000_RS04515 PF00578 AhpC/TSA family JX000_RS04520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS04520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS04525 PF01475 Ferric uptake regulator family JX000_RS04695 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS04700 PF00005 ABC transporter JX000_RS04705 PF08331 Domain of unknown function (DUF1730) JX000_RS04710 PF00588 SpoU rRNA Methylase family JX000_RS04715 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JX000_RS04730 PF00206 Lyase JX000_RS04730 PF10415 Fumarase C C-terminus JX000_RS04735 PF01479 S4 domain JX000_RS04735 PF00849 RNA pseudouridylate synthase JX000_RS04740 PF07730 Histidine kinase JX000_RS04740 PF13185 GAF domain JX000_RS04745 PF00072 Response regulator receiver domain JX000_RS04745 PF00196 Bacterial regulatory proteins, luxR family JX000_RS04755 PF04286 Protein of unknown function (DUF445) JX000_RS04760 PF06133 Control of competence regulator ComK, YlbF/YmcA JX000_RS04765 PF00149 Calcineurin-like phosphoesterase JX000_RS04775 PF01966 HD domain JX000_RS04785 PF00639 PPIC-type PPIASE domain JX000_RS04800 PF01230 HIT domain JX000_RS04805 PF00005 ABC transporter JX000_RS04810 PF05975 Bacterial ABC transporter protein EcsB JX000_RS04820 PF01208 Uroporphyrinogen decarboxylase (URO-D) JX000_RS04825 PF00762 Ferrochelatase JX000_RS04830 PF01593 Flavin containing amine oxidoreductase JX000_RS04835 PF06821 Serine hydrolase JX000_RS04885 PF13193 AMP-binding enzyme C-terminal domain JX000_RS04885 PF00501 AMP-binding enzyme JX000_RS04895 PF01809 Putative membrane protein insertion efficiency factor JX000_RS04900 PF00293 NUDIX domain JX000_RS04905 PF00326 Prolyl oligopeptidase family JX000_RS04910 PF01293 Phosphoenolpyruvate carboxykinase JX000_RS04915 PF02772 S-adenosylmethionine synthetase, central domain JX000_RS04915 PF02773 S-adenosylmethionine synthetase, C-terminal domain JX000_RS04915 PF00438 S-adenosylmethionine synthetase, N-terminal domain JX000_RS04925 PF00248 Aldo/keto reductase family JX000_RS04930 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JX000_RS04935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JX000_RS04945 PF00923 Transaldolase/Fructose-6-phosphate aldolase JX000_RS04960 PF04542 Sigma-70 region 2 JX000_RS04970 PF13457 GW (Gly-Tryp) dipeptide domain JX000_RS04970 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JX000_RS04980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JX000_RS04980 PF01872 RibD C-terminal domain JX000_RS04985 PF00677 Lumazine binding domain JX000_RS04990 PF00925 GTP cyclohydrolase II JX000_RS04990 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JX000_RS04995 PF00885 6,7-dimethyl-8-ribityllumazine synthase JX000_RS05000 PF01619 Proline dehydrogenase JX000_RS05005 PF12146 Serine aminopeptidase, S33 JX000_RS05010 PF01047 MarR family JX000_RS05015 PF06962 Putative rRNA methylase JX000_RS05020 PF16199 Radical_SAM C-terminal domain JX000_RS05020 PF04055 Radical SAM superfamily JX000_RS05025 PF07690 Major Facilitator Superfamily JX000_RS05030 PF00133 tRNA synthetases class I (I, L, M and V) JX000_RS05030 PF08264 Anticodon-binding domain of tRNA JX000_RS05030 PF09334 tRNA synthetases class I (M) JX000_RS05030 PF13603 Leucyl-tRNA synthetase, Domain 2 JX000_RS05035 PF00581 Rhodanese-like domain JX000_RS05055 PF14667 Polysaccharide biosynthesis C-terminal domain JX000_RS05055 PF01943 Polysaccharide biosynthesis protein JX000_RS05060 PF01479 S4 domain JX000_RS05060 PF00849 RNA pseudouridylate synthase JX000_RS05070 PF01546 Peptidase family M20/M25/M40 JX000_RS05075 PF01063 Amino-transferase class IV JX000_RS05080 PF01636 Phosphotransferase enzyme family JX000_RS05085 PF02390 Putative methyltransferase JX000_RS05090 PF00753 Metallo-beta-lactamase superfamily JX000_RS05100 PF05343 M42 glutamyl aminopeptidase JX000_RS05105 PF00085 Thioredoxin JX000_RS05110 PF07285 Protein of unknown function (DUF1444) JX000_RS05115 PF14794 Domain of unknown function (DUF4479) JX000_RS05115 PF01588 Putative tRNA binding domain JX000_RS05120 PF09397 Ftsk gamma domain JX000_RS05120 PF01580 FtsK/SpoIIIE family JX000_RS05120 PF17854 FtsK alpha domain JX000_RS05125 PF01225 Mur ligase family, catalytic domain JX000_RS05125 PF02875 Mur ligase family, glutamate ligase domain JX000_RS05125 PF08245 Mur ligase middle domain JX000_RS05130 PF06103 Bacterial protein of unknown function (DUF948) JX000_RS05140 PF00793 DAHP synthetase I family JX000_RS05140 PF01817 Chorismate mutase type II JX000_RS05145 PF00356 Bacterial regulatory proteins, lacI family JX000_RS05150 PF00850 Histone deacetylase domain JX000_RS05155 PF00583 Acetyltransferase (GNAT) family JX000_RS05160 PF00501 AMP-binding enzyme JX000_RS05160 PF13193 AMP-binding enzyme C-terminal domain JX000_RS05165 PF13610 DDE domain JX000_RS05170 PF01268 Formate--tetrahydrofolate ligase JX000_RS05175 PF00912 Transglycosylase JX000_RS05175 PF00905 Penicillin binding protein transpeptidase domain JX000_RS05175 PF17092 Penicillin-binding protein OB-like domain JX000_RS05180 PF01479 S4 domain JX000_RS05180 PF00579 tRNA synthetases class I (W and Y) JX000_RS05190 PF07690 Major Facilitator Superfamily JX000_RS05195 PF13180 PDZ domain JX000_RS05200 PF01553 Acyltransferase JX000_RS05220 PF02378 Phosphotransferase system, EIIC JX000_RS05220 PF00367 phosphotransferase system, EIIB JX000_RS05230 PF01842 ACT domain JX000_RS05230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS05230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS05235 PF00266 Aminotransferase class-V JX000_RS05240 PF02566 OsmC-like protein JX000_RS05245 PF03009 Glycerophosphoryl diester phosphodiesterase family JX000_RS05250 PF00163 Ribosomal protein S4/S9 N-terminal domain JX000_RS05250 PF01479 S4 domain JX000_RS05255 PF13185 GAF domain JX000_RS05260 PF06160 Septation ring formation regulator, EzrA JX000_RS05265 PF00266 Aminotransferase class-V JX000_RS05270 PF02568 Thiamine biosynthesis protein (ThiI) JX000_RS05270 PF02926 THUMP domain JX000_RS05275 PF01925 Sulfite exporter TauE/SafE JX000_RS05280 PF08534 Redoxin JX000_RS05285 PF02384 N-6 DNA Methylase JX000_RS05290 PF00871 Acetokinase family JX000_RS05295 PF00582 Universal stress protein family JX000_RS05300 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JX000_RS05300 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JX000_RS05305 PF00557 Metallopeptidase family M24 JX000_RS05305 PF01321 Creatinase/Prolidase N-terminal domain JX000_RS05320 PF00392 Bacterial regulatory proteins, gntR family JX000_RS05320 PF00571 CBS domain JX000_RS05320 PF03061 Thioesterase superfamily JX000_RS05320 PF07085 DRTGG domain JX000_RS05325 PF02272 DHHA1 domain JX000_RS05325 PF01368 DHH family JX000_RS05330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JX000_RS05330 PF07733 Bacterial DNA polymerase III alpha NTPase domain JX000_RS05330 PF01336 OB-fold nucleic acid binding domain JX000_RS05330 PF02811 PHP domain JX000_RS05330 PF14579 Helix-hairpin-helix motif JX000_RS05335 PF03949 Malic enzyme, NAD binding domain JX000_RS05335 PF00390 Malic enzyme, N-terminal domain JX000_RS05340 PF17848 Acetyl-coA carboxylase zinc finger domain JX000_RS05340 PF01039 Carboxyl transferase domain JX000_RS05345 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JX000_RS05350 PF00365 Phosphofructokinase JX000_RS05355 PF00391 PEP-utilising enzyme, mobile domain JX000_RS05355 PF00224 Pyruvate kinase, barrel domain JX000_RS05355 PF02887 Pyruvate kinase, alpha/beta domain JX000_RS05360 PF00324 Amino acid permease JX000_RS05365 PF00285 Citrate synthase, C-terminal domain JX000_RS05370 PF00180 Isocitrate/isopropylmalate dehydrogenase JX000_RS05375 PF00486 Transcriptional regulatory protein, C terminal JX000_RS05375 PF00072 Response regulator receiver domain JX000_RS05380 PF00989 PAS fold JX000_RS05380 PF16736 Single Cache-like JX000_RS05380 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS05385 PF01367 5'-3' exonuclease, C-terminal SAM fold JX000_RS05385 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JX000_RS05385 PF00476 DNA polymerase family A JX000_RS05390 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JX000_RS05390 PF06827 Zinc finger found in FPG and IleRS JX000_RS05390 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JX000_RS05395 PF01121 Dephospho-CoA kinase JX000_RS05400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JX000_RS05400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JX000_RS05405 PF03477 ATP cone domain JX000_RS05410 PF07261 Replication initiation and membrane attachment JX000_RS05415 PF07319 Primosomal protein DnaI N-terminus JX000_RS05415 PF01695 IstB-like ATP binding protein JX000_RS05420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX000_RS05420 PF03129 Anticodon binding domain JX000_RS05420 PF02824 TGS domain JX000_RS05420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JX000_RS05425 PF00324 Amino acid permease JX000_RS05430 PF00707 Translation initiation factor IF-3, C-terminal domain JX000_RS05430 PF05198 Translation initiation factor IF-3, N-terminal domain JX000_RS05435 PF01632 Ribosomal protein L35 JX000_RS05440 PF00453 Ribosomal protein L20 JX000_RS05455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JX000_RS05455 PF05697 Bacterial trigger factor protein (TF) JX000_RS05455 PF05698 Bacterial trigger factor protein (TF) C-terminus JX000_RS05460 PF10431 C-terminal, D2-small domain, of ClpB protein JX000_RS05460 PF07724 AAA domain (Cdc48 subfamily) JX000_RS05460 PF06689 ClpX C4-type zinc finger JX000_RS05465 PF01926 50S ribosome-binding GTPase JX000_RS05470 PF01488 Shikimate / quinate 5-dehydrogenase JX000_RS05470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JX000_RS05470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JX000_RS05475 PF01578 Cytochrome C assembly protein JX000_RS05480 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JX000_RS05480 PF03900 Porphobilinogen deaminase, C-terminal domain JX000_RS05485 PF02602 Uroporphyrinogen-III synthase HemD JX000_RS05485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX000_RS05490 PF00490 Delta-aminolevulinic acid dehydratase JX000_RS05495 PF00202 Aminotransferase class-III JX000_RS05505 PF03352 Methyladenine glycosylase JX000_RS05510 PF08264 Anticodon-binding domain of tRNA JX000_RS05510 PF10458 Valyl tRNA synthetase tRNA binding arm JX000_RS05510 PF00133 tRNA synthetases class I (I, L, M and V) JX000_RS05515 PF02875 Mur ligase family, glutamate ligase domain JX000_RS05515 PF08245 Mur ligase middle domain JX000_RS05525 PF04002 RadC-like JAB domain JX000_RS05560 PF00829 Ribosomal prokaryotic L21 protein JX000_RS05565 PF04327 Cysteine protease Prp JX000_RS05570 PF01016 Ribosomal L27 protein JX000_RS05575 PF01018 GTP1/OBG JX000_RS05575 PF09269 Domain of unknown function (DUF1967) JX000_RS05575 PF01926 50S ribosome-binding GTPase JX000_RS05585 PF01330 RuvA N terminal domain JX000_RS05585 PF07499 RuvA, C-terminal domain JX000_RS05590 PF17864 RuvB AAA lid domain JX000_RS05590 PF05496 Holliday junction DNA helicase RuvB P-loop domain JX000_RS05590 PF05491 RuvB C-terminal winged helix domain JX000_RS05595 PF02547 Queuosine biosynthesis protein JX000_RS05600 PF01702 Queuine tRNA-ribosyltransferase JX000_RS05605 PF02699 Preprotein translocase subunit JX000_RS05610 PF07549 SecD/SecF GG Motif JX000_RS05610 PF02355 Protein export membrane protein JX000_RS05615 PF02272 DHHA1 domain JX000_RS05615 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JX000_RS05615 PF01368 DHH family JX000_RS05615 PF17768 RecJ OB domain JX000_RS05620 PF00156 Phosphoribosyl transferase domain JX000_RS05625 PF13291 ACT domain JX000_RS05625 PF04607 Region found in RelA / SpoT proteins JX000_RS05625 PF02824 TGS domain JX000_RS05630 PF02580 D-Tyr-tRNA(Tyr) deacylase JX000_RS05635 PF01520 N-acetylmuramoyl-L-alanine amidase JX000_RS05635 PF08239 Bacterial SH3 domain JX000_RS05640 PF13393 Histidyl-tRNA synthetase JX000_RS05640 PF03129 Anticodon binding domain JX000_RS05645 PF00152 tRNA synthetases class II (D, K and N) JX000_RS05645 PF01336 OB-fold nucleic acid binding domain JX000_RS05645 PF02938 GAD domain JX000_RS05655 PF00899 ThiF family JX000_RS05660 PF05496 Holliday junction DNA helicase RuvB P-loop domain JX000_RS05660 PF12002 MgsA AAA+ ATPase C terminal JX000_RS05660 PF16193 AAA C-terminal domain JX000_RS05665 PF02082 Transcriptional regulator JX000_RS05675 PF00296 Luciferase-like monooxygenase JX000_RS05680 PF00266 Aminotransferase class-V JX000_RS05695 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JX000_RS05695 PF14490 Helix-hairpin-helix containing domain JX000_RS05695 PF13538 UvrD-like helicase C-terminal domain JX000_RS05700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JX000_RS05700 PF02272 DHHA1 domain JX000_RS05700 PF01411 tRNA synthetases class II (A) JX000_RS05705 PF06135 IreB regulatory phosphoprotein JX000_RS05710 PF03652 Holliday junction resolvase JX000_RS05715 PF06949 Protein of unknown function (DUF1292) JX000_RS05720 PF01596 O-methyltransferase JX000_RS05725 PF01136 Peptidase family U32 JX000_RS05730 PF16325 Peptidase family U32 C-terminal domain JX000_RS05730 PF01136 Peptidase family U32 JX000_RS05735 PF00485 Phosphoribulokinase / Uridine kinase family JX000_RS05740 PF01272 Transcription elongation factor, GreA/GreB, C-term JX000_RS05740 PF03449 Transcription elongation factor, N-terminal JX000_RS05745 PF02682 Carboxyltransferase domain, subdomain C and D JX000_RS05750 PF02626 Carboxyltransferase domain, subdomain A and B JX000_RS05755 PF00364 Biotin-requiring enzyme JX000_RS05760 PF00289 Biotin carboxylase, N-terminal domain JX000_RS05760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX000_RS05760 PF02785 Biotin carboxylase C-terminal domain JX000_RS05765 PF03746 LamB/YcsF family JX000_RS05770 PF01566 Natural resistance-associated macrophage protein JX000_RS05775 PF01048 Phosphorylase superfamily JX000_RS05785 PF01926 50S ribosome-binding GTPase JX000_RS05790 PF08501 Shikimate dehydrogenase substrate binding domain JX000_RS05790 PF01488 Shikimate / quinate 5-dehydrogenase JX000_RS05790 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JX000_RS05795 PF01985 CRS1 / YhbY (CRM) domain JX000_RS05800 PF01467 Cytidylyltransferase-like JX000_RS05805 PF01966 HD domain JX000_RS05815 PF13649 Methyltransferase domain JX000_RS05825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JX000_RS05835 PF06144 DNA polymerase III, delta subunit JX000_RS05840 PF01649 Ribosomal protein S20 JX000_RS05845 PF03144 Elongation factor Tu domain 2 JX000_RS05845 PF06421 GTP-binding protein LepA C-terminus JX000_RS05845 PF00679 Elongation factor G C-terminus JX000_RS05845 PF00009 Elongation factor Tu GTP binding domain JX000_RS05845 PF14492 Elongation Factor G, domain II JX000_RS05850 PF06969 HemN C-terminal domain JX000_RS05850 PF04055 Radical SAM superfamily JX000_RS05855 PF01628 HrcA protein C terminal domain JX000_RS05860 PF01025 GrpE JX000_RS05865 PF00012 Hsp70 protein JX000_RS05870 PF00684 DnaJ central domain JX000_RS05870 PF01556 DnaJ C terminal domain JX000_RS05870 PF00226 DnaJ domain JX000_RS05880 PF04452 RNA methyltransferase JX000_RS05885 PF00919 Uncharacterized protein family UPF0004 JX000_RS05885 PF04055 Radical SAM superfamily JX000_RS05885 PF01938 TRAM domain JX000_RS05890 PF01165 Ribosomal protein S21 JX000_RS05895 PF01957 NfeD-like C-terminal, partner-binding JX000_RS05895 PF01972 Serine dehydrogenase proteinase JX000_RS05900 PF12127 SigmaW regulon antibacterial JX000_RS05910 PF02562 PhoH-like protein JX000_RS05915 PF02130 Uncharacterized protein family UPF0054 JX000_RS05920 PF01219 Prokaryotic diacylglycerol kinase JX000_RS05925 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JX000_RS05930 PF07650 KH domain JX000_RS05930 PF01926 50S ribosome-binding GTPase JX000_RS05935 PF11967 Recombination protein O N terminal JX000_RS05935 PF02565 Recombination protein O C terminal JX000_RS05940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX000_RS05940 PF03129 Anticodon binding domain JX000_RS05945 PF00571 CBS domain JX000_RS05945 PF08279 HTH domain JX000_RS05950 PF03618 Kinase/pyrophosphorylase JX000_RS05955 PF01807 CHC2 zinc finger JX000_RS05955 PF08275 DNA primase catalytic core, N-terminal domain JX000_RS05955 PF00772 DnaB-like helicase N terminal domain JX000_RS05960 PF00140 Sigma-70 factor, region 1.2 JX000_RS05960 PF04542 Sigma-70 region 2 JX000_RS05960 PF04539 Sigma-70 region 3 JX000_RS05960 PF03979 Sigma-70 factor, region 1.1 JX000_RS05960 PF04545 Sigma-70, region 4 JX000_RS05965 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JX000_RS05970 PF01784 NIF3 (NGG1p interacting factor 3) JX000_RS05975 PF00271 Helicase conserved C-terminal domain JX000_RS05975 PF00270 DEAD/DEAH box helicase JX000_RS05980 PF01261 Xylose isomerase-like TIM barrel JX000_RS05985 PF00005 ABC transporter JX000_RS05990 PF00950 ABC 3 transport family JX000_RS05995 PF01475 Ferric uptake regulator family JX000_RS06000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JX000_RS06000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JX000_RS06005 PF03717 Penicillin-binding Protein dimerisation domain JX000_RS06005 PF00905 Penicillin binding protein transpeptidase domain JX000_RS06010 PF00471 Ribosomal protein L33 JX000_RS06015 PF01812 5-formyltetrahydrofolate cyclo-ligase family JX000_RS06025 PF06014 Bacterial protein of unknown function (DUF910) JX000_RS06030 PF00480 ROK family JX000_RS06035 PF01910 Thiamine-binding protein JX000_RS06040 PF00753 Metallo-beta-lactamase superfamily JX000_RS06045 PF00437 Type II/IV secretion system protein JX000_RS06055 PF07963 Prokaryotic N-terminal methylation motif JX000_RS06070 PF01202 Shikimate kinase JX000_RS06075 PF01571 Aminomethyltransferase folate-binding domain JX000_RS06075 PF08669 Glycine cleavage T-protein C-terminal barrel domain JX000_RS06080 PF02347 Glycine cleavage system P-protein JX000_RS06085 PF00266 Aminotransferase class-V JX000_RS06090 PF00581 Rhodanese-like domain JX000_RS06095 PF03099 Biotin/lipoate A/B protein ligase family JX000_RS06110 PF00557 Metallopeptidase family M24 JX000_RS06110 PF01321 Creatinase/Prolidase N-terminal domain JX000_RS06115 PF01132 Elongation factor P (EF-P) OB domain JX000_RS06115 PF08207 Elongation factor P (EF-P) KOW-like domain JX000_RS06115 PF09285 Elongation factor P, C-terminal JX000_RS06120 PF02774 Semialdehyde dehydrogenase, dimerisation domain JX000_RS06120 PF01118 Semialdehyde dehydrogenase, NAD binding domain JX000_RS06130 PF00696 Amino acid kinase family JX000_RS06140 PF00364 Biotin-requiring enzyme JX000_RS06145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX000_RS06145 PF02785 Biotin carboxylase C-terminal domain JX000_RS06145 PF00289 Biotin carboxylase, N-terminal domain JX000_RS06150 PF03780 Asp23 family, cell envelope-related function JX000_RS06155 PF01029 NusB family JX000_RS06160 PF02601 Exonuclease VII, large subunit JX000_RS06160 PF13742 OB-fold nucleic acid binding domain JX000_RS06165 PF02609 Exonuclease VII small subunit JX000_RS06170 PF00348 Polyprenyl synthetase JX000_RS06175 PF01316 Arginine repressor, DNA binding domain JX000_RS06175 PF02863 Arginine repressor, C-terminal domain JX000_RS06180 PF13476 AAA domain JX000_RS06185 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS06185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX000_RS06190 PF00676 Dehydrogenase E1 component JX000_RS06195 PF02779 Transketolase, pyrimidine binding domain JX000_RS06195 PF02780 Transketolase, C-terminal domain JX000_RS06200 PF00364 Biotin-requiring enzyme JX000_RS06200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JX000_RS06200 PF02817 e3 binding domain JX000_RS06205 PF06491 Disulphide isomerase JX000_RS06210 PF11728 Putative aromatic acid exporter C-terminal domain JX000_RS06210 PF06081 Aromatic acid exporter family member 1 JX000_RS06215 PF07687 Peptidase dimerisation domain JX000_RS06215 PF01546 Peptidase family M20/M25/M40 JX000_RS06220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JX000_RS06220 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JX000_RS06225 PF16657 Maltogenic Amylase, C-terminal domain JX000_RS06225 PF00128 Alpha amylase, catalytic domain JX000_RS06235 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JX000_RS06235 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JX000_RS06240 PF12706 Beta-lactamase superfamily domain JX000_RS06245 PF14748 Pyrroline-5-carboxylate reductase dimerisation JX000_RS06245 PF03807 NADP oxidoreductase coenzyme F420-dependent JX000_RS06250 PF00106 short chain dehydrogenase JX000_RS06255 PF00248 Aldo/keto reductase family JX000_RS06260 PF00293 NUDIX domain JX000_RS06265 PF01475 Ferric uptake regulator family JX000_RS06270 PF02899 Phage integrase, N-terminal SAM-like domain JX000_RS06270 PF00589 Phage integrase family JX000_RS06280 PF02616 Segregation and condensation protein ScpA JX000_RS06285 PF04079 Segregation and condensation complex subunit ScpB JX000_RS06290 PF01479 S4 domain JX000_RS06290 PF00849 RNA pseudouridylate synthase JX000_RS06295 PF00486 Transcriptional regulatory protein, C terminal JX000_RS06295 PF00072 Response regulator receiver domain JX000_RS06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS06300 PF18698 Histidine kinase sensor domain JX000_RS06300 PF00672 HAMP domain JX000_RS06300 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS06305 PF12822 ECF transporter, substrate-specific component JX000_RS06320 PF00270 DEAD/DEAH box helicase JX000_RS06320 PF00271 Helicase conserved C-terminal domain JX000_RS06325 PF01476 LysM domain JX000_RS06325 PF01476 LysM domain JX000_RS06335 PF00710 Asparaginase, N-terminal JX000_RS06335 PF17763 Glutaminase/Asparaginase C-terminal domain JX000_RS06340 PF02224 Cytidylate kinase JX000_RS06345 PF00575 S1 RNA binding domain JX000_RS06350 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JX000_RS06350 PF01926 50S ribosome-binding GTPase JX000_RS06355 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JX000_RS06355 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JX000_RS06360 PF00216 Bacterial DNA-binding protein JX000_RS06370 PF01209 ubiE/COQ5 methyltransferase family JX000_RS06375 PF00348 Polyprenyl synthetase JX000_RS06380 PF00334 Nucleoside diphosphate kinase JX000_RS06385 PF01264 Chorismate synthase JX000_RS06390 PF01761 3-dehydroquinate synthase JX000_RS06395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JX000_RS06405 PF08864 UPF0302 domain JX000_RS06405 PF08858 IDEAL domain JX000_RS06410 PF07187 Protein of unknown function (DUF1405) JX000_RS06415 PF04298 Putative neutral zinc metallopeptidase JX000_RS06420 PF03819 MazG nucleotide pyrophosphohydrolase domain JX000_RS06425 PF13439 Glycosyltransferase Family 4 JX000_RS06425 PF00534 Glycosyl transferases group 1 JX000_RS06430 PF01743 Poly A polymerase head domain JX000_RS06430 PF13735 tRNA nucleotidyltransferase domain 2 putative JX000_RS06430 PF12627 Probable RNA and SrmB- binding site of polymerase A JX000_RS06435 PF08279 HTH domain JX000_RS06435 PF03099 Biotin/lipoate A/B protein ligase family JX000_RS06435 PF02237 Biotin protein ligase C terminal domain JX000_RS06440 PF00929 Exonuclease JX000_RS06440 PF04851 Type III restriction enzyme, res subunit JX000_RS06440 PF13307 Helicase C-terminal domain JX000_RS06445 PF01336 OB-fold nucleic acid binding domain JX000_RS06445 PF00152 tRNA synthetases class II (D, K and N) JX000_RS06450 PF07261 Replication initiation and membrane attachment JX000_RS06455 PF00633 Helix-hairpin-helix motif JX000_RS06455 PF10576 Iron-sulfur binding domain of endonuclease III JX000_RS06455 PF00730 HhH-GPD superfamily base excision DNA repair protein JX000_RS06465 PF00905 Penicillin binding protein transpeptidase domain JX000_RS06465 PF00912 Transglycosylase JX000_RS06470 PF03838 Recombination protein U JX000_RS06480 PF06908 YspA SLOG family JX000_RS06485 PF05103 DivIVA protein JX000_RS06495 PF01170 Putative RNA methylase family UPF0020 JX000_RS06495 PF02926 THUMP domain JX000_RS06505 PF00350 Dynamin family JX000_RS06510 PF01367 5'-3' exonuclease, C-terminal SAM fold JX000_RS06510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JX000_RS06515 PF01468 GA module JX000_RS06515 PF07564 Domain of Unknown Function (DUF1542) JX000_RS06515 PF04650 YSIRK type signal peptide JX000_RS06575 PF02592 Putative vitamin uptake transporter JX000_RS06585 PF13769 Virulence factor JX000_RS06585 PF08712 Scaffold protein Nfu/NifU N terminal JX000_RS06590 PF13769 Virulence factor JX000_RS06590 PF08712 Scaffold protein Nfu/NifU N terminal JX000_RS06595 PF06491 Disulphide isomerase JX000_RS06600 PF00303 Thymidylate synthase JX000_RS06605 PF00186 Dihydrofolate reductase JX000_RS06610 PF02645 Uncharacterised protein, DegV family COG1307 JX000_RS06615 PF01625 Peptide methionine sulfoxide reductase JX000_RS06620 PF01641 SelR domain JX000_RS06625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JX000_RS06630 PF06855 YozE SAM-like fold JX000_RS06635 PF17820 PDZ domain JX000_RS06635 PF03572 Peptidase family S41 JX000_RS06635 PF01471 Putative peptidoglycan binding domain JX000_RS06645 PF04101 Glycosyltransferase family 28 C-terminal domain JX000_RS06645 PF03033 Glycosyltransferase family 28 N-terminal domain JX000_RS06650 PF01569 PAP2 superfamily JX000_RS06655 PF00072 Response regulator receiver domain JX000_RS06655 PF00486 Transcriptional regulatory protein, C terminal JX000_RS06660 PF00512 His Kinase A (phospho-acceptor) domain JX000_RS06660 PF18719 ArlS sensor domain JX000_RS06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS06665 PF00676 Dehydrogenase E1 component JX000_RS06665 PF02779 Transketolase, pyrimidine binding domain JX000_RS06665 PF16870 2-oxoglutarate dehydrogenase C-terminal JX000_RS06670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JX000_RS06670 PF00364 Biotin-requiring enzyme JX000_RS06670 PF02817 e3 binding domain JX000_RS06675 PF00005 ABC transporter JX000_RS06675 PF13732 Domain of unknown function (DUF4162) JX000_RS06700 PF07728 AAA domain (dynein-related subfamily) JX000_RS06700 PF08406 CbbQ/NirQ/NorQ C-terminal JX000_RS06705 PF00092 von Willebrand factor type A domain JX000_RS06710 PF05525 Branched-chain amino acid transport protein JX000_RS06715 PF05816 Toxic anion resistance protein (TelA) JX000_RS06725 PF00708 Acylphosphatase JX000_RS06735 PF00313 'Cold-shock' DNA-binding domain JX000_RS06740 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JX000_RS06740 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JX000_RS06745 PF00842 Alanine racemase, C-terminal domain JX000_RS06745 PF01168 Alanine racemase, N-terminal domain JX000_RS06750 PF01546 Peptidase family M20/M25/M40 JX000_RS06755 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JX000_RS06755 PF14602 Hexapeptide repeat of succinyl-transferase JX000_RS06755 PF00132 Bacterial transferase hexapeptide (six repeats) JX000_RS06760 PF01113 Dihydrodipicolinate reductase, N-terminus JX000_RS06760 PF05173 Dihydrodipicolinate reductase, C-terminus JX000_RS06765 PF00701 Dihydrodipicolinate synthetase family JX000_RS06770 PF02774 Semialdehyde dehydrogenase, dimerisation domain JX000_RS06770 PF01118 Semialdehyde dehydrogenase, NAD binding domain JX000_RS06775 PF13840 ACT domain JX000_RS06775 PF01842 ACT domain JX000_RS06775 PF00696 Amino acid kinase family JX000_RS06780 PF12848 ABC transporter JX000_RS06780 PF00005 ABC transporter JX000_RS06785 PF17783 CvfB-like winged helix domain JX000_RS06785 PF13509 S1 domain JX000_RS06790 PF12849 PBP superfamily domain JX000_RS06795 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS06800 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS06805 PF00005 ABC transporter JX000_RS06810 PF01895 PhoU domain JX000_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS06830 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS06835 PF00005 ABC transporter JX000_RS06840 PF00005 ABC transporter JX000_RS06855 PF02388 FemAB family JX000_RS06860 PF02388 FemAB family JX000_RS06865 PF00290 Tryptophan synthase alpha chain JX000_RS06870 PF00291 Pyridoxal-phosphate dependent enzyme JX000_RS06875 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JX000_RS06880 PF00218 Indole-3-glycerol phosphate synthase JX000_RS06885 PF00591 Glycosyl transferase family, a/b domain JX000_RS06890 PF00117 Glutamine amidotransferase class-I JX000_RS06900 PF05343 M42 glutamyl aminopeptidase JX000_RS06905 PF02153 Prephenate dehydrogenase JX000_RS06905 PF01842 ACT domain JX000_RS06910 PF00817 impB/mucB/samB family JX000_RS06910 PF11799 impB/mucB/samB family C-terminal domain JX000_RS06910 PF11798 IMS family HHH motif JX000_RS06915 PF01361 Tautomerase enzyme JX000_RS06920 PF03816 Cell envelope-related transcriptional attenuator domain JX000_RS06925 PF01625 Peptide methionine sulfoxide reductase JX000_RS06930 PF09924 Uncharacterised conserved protein (DUF2156) JX000_RS06930 PF03706 Lysylphosphatidylglycerol synthase TM region JX000_RS06935 PF01594 AI-2E family transporter JX000_RS06940 PF00874 PRD domain JX000_RS06940 PF03123 CAT RNA binding domain JX000_RS06945 PF01235 Sodium:alanine symporter family JX000_RS06950 PF00521 DNA gyrase/topoisomerase IV, subunit A JX000_RS06950 PF03989 DNA gyrase C-terminal domain, beta-propeller JX000_RS06955 PF00204 DNA gyrase B JX000_RS06955 PF00986 DNA gyrase B subunit, carboxyl terminus JX000_RS06955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS06955 PF01751 Toprim domain JX000_RS06960 PF02660 Glycerol-3-phosphate acyltransferase JX000_RS06970 PF03061 Thioesterase superfamily JX000_RS06975 PF00330 Aconitase family (aconitate hydratase) JX000_RS06975 PF00694 Aconitase C-terminal domain JX000_RS06980 PF02028 BCCT, betaine/carnitine/choline family transporter JX000_RS06985 PF01741 Large-conductance mechanosensitive channel, MscL JX000_RS06990 PF13476 AAA domain JX000_RS06995 PF12320 Type 5 capsule protein repressor C-terminal domain JX000_RS06995 PF00149 Calcineurin-like phosphoesterase JX000_RS07000 PF07301 Protein of unknown function (DUF1453) JX000_RS07010 PF03672 Uncharacterised protein family (UPF0154) JX000_RS07015 PF00456 Transketolase, thiamine diphosphate binding domain JX000_RS07015 PF02780 Transketolase, C-terminal domain JX000_RS07015 PF02779 Transketolase, pyrimidine binding domain JX000_RS07020 PF05979 Bacterial protein of unknown function (DUF896) JX000_RS07030 PF01726 LexA DNA binding domain JX000_RS07030 PF00717 Peptidase S24-like JX000_RS07040 PF00478 IMP dehydrogenase / GMP reductase domain JX000_RS07045 PF00253 Ribosomal protein S14p/S29e JX000_RS07050 PF00471 Ribosomal protein L33 JX000_RS07055 PF00199 Catalase JX000_RS07055 PF06628 Catalase-related immune-responsive JX000_RS07060 PF00324 Amino acid permease JX000_RS07075 PF00288 GHMP kinases N terminal domain JX000_RS07075 PF08544 GHMP kinases C terminal JX000_RS07080 PF00291 Pyridoxal-phosphate dependent enzyme JX000_RS07085 PF01842 ACT domain JX000_RS07085 PF03447 Homoserine dehydrogenase, NAD binding domain JX000_RS07085 PF00742 Homoserine dehydrogenase JX000_RS07090 PF00696 Amino acid kinase family JX000_RS07090 PF13840 ACT domain JX000_RS07105 PF00565 Staphylococcal nuclease homologue JX000_RS07120 PF00196 Bacterial regulatory proteins, luxR family JX000_RS07120 PF00072 Response regulator receiver domain JX000_RS07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS07125 PF07730 Histidine kinase JX000_RS07135 PF00005 ABC transporter JX000_RS07140 PF13091 PLD-like domain JX000_RS07140 PF13396 Phospholipase_D-nuclease N-terminal JX000_RS07175 PF03951 Glutamine synthetase, beta-Grasp domain JX000_RS07175 PF00120 Glutamine synthetase, catalytic domain JX000_RS07180 PF13411 MerR HTH family regulatory protein JX000_RS07185 PF06838 Methionine gamma-lyase JX000_RS07190 PF13167 GTP-binding GTPase N-terminal JX000_RS07190 PF01926 50S ribosome-binding GTPase JX000_RS07190 PF16360 GTP-binding GTPase Middle Region JX000_RS07195 PF00255 Glutathione peroxidase JX000_RS07200 PF17209 Hfq protein JX000_RS07210 PF00561 alpha/beta hydrolase fold JX000_RS07215 PF01266 FAD dependent oxidoreductase JX000_RS07215 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JX000_RS07220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JX000_RS07220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX000_RS07225 PF00230 Major intrinsic protein JX000_RS07230 PF04309 Glycerol-3-phosphate responsive antiterminator JX000_RS07235 PF08676 MutL C terminal dimerisation domain JX000_RS07235 PF01119 DNA mismatch repair protein, C-terminal domain JX000_RS07240 PF05188 MutS domain II JX000_RS07240 PF05192 MutS domain III JX000_RS07240 PF05190 MutS family domain IV JX000_RS07240 PF00488 MutS domain V JX000_RS07240 PF01624 MutS domain I JX000_RS07250 PF06133 Control of competence regulator ComK, YlbF/YmcA JX000_RS07255 PF01938 TRAM domain JX000_RS07255 PF04055 Radical SAM superfamily JX000_RS07255 PF00919 Uncharacterized protein family UPF0004 JX000_RS07260 PF01910 Thiamine-binding protein JX000_RS07265 PF05908 Poly-gamma-glutamate hydrolase JX000_RS07270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS07275 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JX000_RS07275 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JX000_RS07275 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JX000_RS07280 PF13277 YmdB-like protein JX000_RS07290 PF00013 KH domain JX000_RS07290 PF12072 Domain of unknown function (DUF3552) JX000_RS07290 PF01966 HD domain JX000_RS07295 PF00154 recA bacterial DNA recombination protein JX000_RS07300 PF18146 Damage-inducible protein CinA KH domain JX000_RS07300 PF02464 Competence-damaged protein JX000_RS07300 PF00994 Probable molybdopterin binding domain JX000_RS07305 PF01066 CDP-alcohol phosphatidyltransferase JX000_RS07310 PF13464 Domain of unknown function (DUF4115) JX000_RS07315 PF11868 Protein of unknown function (DUF3388) JX000_RS07325 PF05193 Peptidase M16 inactive domain JX000_RS07325 PF00675 Insulinase (Peptidase family M16) JX000_RS07330 PF05193 Peptidase M16 inactive domain JX000_RS07335 PF00392 Bacterial regulatory proteins, gntR family JX000_RS07335 PF07702 UTRA domain JX000_RS07340 PF01580 FtsK/SpoIIIE family JX000_RS07340 PF17854 FtsK alpha domain JX000_RS07340 PF09397 Ftsk gamma domain JX000_RS07345 PF00753 Metallo-beta-lactamase superfamily JX000_RS07345 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JX000_RS07345 PF17770 Ribonuclease J C-terminal domain JX000_RS07350 PF01138 3' exoribonuclease family, domain 1 JX000_RS07350 PF03725 3' exoribonuclease family, domain 2 JX000_RS07350 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JX000_RS07350 PF00013 KH domain JX000_RS07350 PF00575 S1 RNA binding domain JX000_RS07355 PF00312 Ribosomal protein S15 JX000_RS07360 PF01687 Riboflavin kinase JX000_RS07360 PF06574 FAD synthetase JX000_RS07365 PF16198 tRNA pseudouridylate synthase B C-terminal domain JX000_RS07365 PF01509 TruB family pseudouridylate synthase (N terminal domain) JX000_RS07370 PF02033 Ribosome-binding factor A JX000_RS07375 PF11987 Translation-initiation factor 2 JX000_RS07375 PF04760 Translation initiation factor IF-2, N-terminal region JX000_RS07375 PF00009 Elongation factor Tu GTP binding domain JX000_RS07380 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JX000_RS07385 PF04296 Protein of unknown function (DUF448) JX000_RS07390 PF00575 S1 RNA binding domain JX000_RS07390 PF08529 NusA N-terminal domain JX000_RS07390 PF13184 NusA-like KH domain JX000_RS07395 PF02576 RimP N-terminal domain JX000_RS07395 PF17384 RimP C-terminal SH3 domain JX000_RS07400 PF00929 Exonuclease JX000_RS07400 PF02811 PHP domain JX000_RS07400 PF14579 Helix-hairpin-helix motif JX000_RS07400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JX000_RS07400 PF07733 Bacterial DNA polymerase III alpha NTPase domain JX000_RS07400 PF11490 DNA polymerase III polC-type N-terminus II JX000_RS07400 PF14480 DNA polymerase III polC-type N-terminus I JX000_RS07405 PF04073 Aminoacyl-tRNA editing domain JX000_RS07405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JX000_RS07405 PF03129 Anticodon binding domain JX000_RS07410 PF13180 PDZ domain JX000_RS07410 PF02163 Peptidase family M50 JX000_RS07420 PF01255 Putative undecaprenyl diphosphate synthase JX000_RS07425 PF01765 Ribosome recycling factor JX000_RS07430 PF00696 Amino acid kinase family JX000_RS07435 PF00889 Elongation factor TS JX000_RS07440 PF00318 Ribosomal protein S2 JX000_RS07445 PF06018 CodY GAF-like domain JX000_RS07445 PF08222 CodY helix-turn-helix domain JX000_RS07450 PF00004 ATPase family associated with various cellular activities (AAA) JX000_RS07450 PF07724 AAA domain (Cdc48 subfamily) JX000_RS07450 PF10431 C-terminal, D2-small domain, of ClpB protein JX000_RS07455 PF00227 Proteasome subunit JX000_RS07460 PF02899 Phage integrase, N-terminal SAM-like domain JX000_RS07460 PF00589 Phage integrase family JX000_RS07465 PF01134 Glucose inhibited division protein A JX000_RS07470 PF01396 Topoisomerase DNA binding C4 zinc finger JX000_RS07470 PF01751 Toprim domain JX000_RS07470 PF01131 DNA topoisomerase JX000_RS07475 PF18255 DNA processing protein A sterile alpha motif domain JX000_RS07475 PF02481 DNA recombination-mediator protein A JX000_RS07480 PF02629 CoA binding domain JX000_RS07480 PF00549 CoA-ligase JX000_RS07485 PF00549 CoA-ligase JX000_RS07485 PF08442 ATP-grasp domain JX000_RS07490 PF01351 Ribonuclease HII JX000_RS07495 PF01926 50S ribosome-binding GTPase JX000_RS07500 PF09586 Bacterial membrane protein YfhO JX000_RS07510 PF01245 Ribosomal protein L19 JX000_RS07515 PF01746 tRNA (Guanine-1)-methyltransferase JX000_RS07520 PF05239 PRC-barrel domain JX000_RS07520 PF01782 RimM N-terminal domain JX000_RS07525 PF00886 Ribosomal protein S16 JX000_RS07530 PF00448 SRP54-type protein, GTPase domain JX000_RS07530 PF02881 SRP54-type protein, helical bundle domain JX000_RS07530 PF02978 Signal peptide binding domain JX000_RS07535 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JX000_RS07540 PF02881 SRP54-type protein, helical bundle domain JX000_RS07540 PF00448 SRP54-type protein, GTPase domain JX000_RS07545 PF06470 SMC proteins Flexible Hinge Domain JX000_RS07545 PF02463 RecF/RecN/SMC N terminal domain JX000_RS07550 PF14622 Ribonuclease-III-like JX000_RS07550 PF00035 Double-stranded RNA binding motif JX000_RS07555 PF00550 Phosphopantetheine attachment site JX000_RS07565 PF00698 Acyl transferase domain JX000_RS07570 PF02504 Fatty acid synthesis protein JX000_RS07575 PF01575 MaoC like domain JX000_RS07580 PF00270 DEAD/DEAH box helicase JX000_RS07580 PF00271 Helicase conserved C-terminal domain JX000_RS07580 PF17191 RecG wedge domain JX000_RS07585 PF02734 DAK2 domain JX000_RS07585 PF13684 Dihydroxyacetone kinase family JX000_RS07590 PF03780 Asp23 family, cell envelope-related function JX000_RS07595 PF00830 Ribosomal L28 family JX000_RS07605 PF00834 Ribulose-phosphate 3 epimerase family JX000_RS07610 PF16745 RsgA N-terminal domain JX000_RS07610 PF03193 RsgA GTPase JX000_RS07615 PF03793 PASTA domain JX000_RS07615 PF00069 Protein kinase domain JX000_RS07625 PF04055 Radical SAM superfamily JX000_RS07630 PF01029 NusB family JX000_RS07630 PF01189 16S rRNA methyltransferase RsmB/F JX000_RS07635 PF00551 Formyl transferase JX000_RS07635 PF02911 Formyl transferase, C-terminal domain JX000_RS07640 PF01327 Polypeptide deformylase JX000_RS07650 PF17764 3′ DNA-binding domain (3′BD) JX000_RS07650 PF18074 Primosomal protein N C-terminal domain JX000_RS07650 PF00271 Helicase conserved C-terminal domain JX000_RS07650 PF04851 Type III restriction enzyme, res subunit JX000_RS07650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JX000_RS07655 PF02441 Flavoprotein JX000_RS07655 PF04127 DNA / pantothenate metabolism flavoprotein JX000_RS07660 PF01192 RNA polymerase Rpb6 JX000_RS07665 PF00625 Guanylate kinase JX000_RS07670 PF05670 NFACT protein RNA binding domain JX000_RS07685 PF00156 Phosphoribosyl transferase domain JX000_RS07690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JX000_RS07695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX000_RS07695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JX000_RS07695 PF02142 MGS-like domain JX000_RS07700 PF00117 Glutamine amidotransferase class-I JX000_RS07700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JX000_RS07705 PF01979 Amidohydrolase family JX000_RS07710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JX000_RS07710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JX000_RS07715 PF00860 Permease family JX000_RS07720 PF00156 Phosphoribosyl transferase domain JX000_RS07730 PF01479 S4 domain JX000_RS07730 PF00849 RNA pseudouridylate synthase JX000_RS07735 PF01252 Signal peptidase (SPase) II JX000_RS07740 PF01476 LysM domain JX000_RS07740 PF05257 CHAP domain JX000_RS07750 PF00133 tRNA synthetases class I (I, L, M and V) JX000_RS07750 PF08264 Anticodon-binding domain of tRNA JX000_RS07750 PF06827 Zinc finger found in FPG and IleRS JX000_RS07755 PF05103 DivIVA protein JX000_RS07765 PF02325 YGGT family JX000_RS07770 PF04472 Cell division protein SepF JX000_RS07775 PF01168 Alanine racemase, N-terminal domain JX000_RS07780 PF02578 Multi-copper polyphenol oxidoreductase laccase JX000_RS07785 PF00091 Tubulin/FtsZ family, GTPase domain JX000_RS07785 PF12327 FtsZ family, C-terminal domain JX000_RS07790 PF02491 SHS2 domain inserted in FTSA JX000_RS07795 PF03799 Cell division protein FtsQ JX000_RS07795 PF08478 POTRA domain, FtsQ-type JX000_RS07800 PF08245 Mur ligase middle domain JX000_RS07800 PF02875 Mur ligase family, glutamate ligase domain JX000_RS07805 PF00953 Glycosyl transferase family 4 JX000_RS07810 PF03793 PASTA domain JX000_RS07810 PF03717 Penicillin-binding Protein dimerisation domain JX000_RS07810 PF00905 Penicillin binding protein transpeptidase domain JX000_RS07815 PF04977 Septum formation initiator JX000_RS07820 PF01795 MraW methylase family JX000_RS07825 PF02381 MraZ protein, putative antitoxin-like JX000_RS07830 PF10079 Bacillithiol biosynthesis BshC JX000_RS07840 PF13419 Haloacid dehalogenase-like hydrolase JX000_RS07845 PF05480 Staphylococcus haemolytic protein JX000_RS07850 PF05480 Staphylococcus haemolytic protein JX000_RS07855 PF05480 Staphylococcus haemolytic protein JX000_RS07860 PF05480 Staphylococcus haemolytic protein JX000_RS07865 PF05480 Staphylococcus haemolytic protein JX000_RS07890 PF05257 CHAP domain JX000_RS07890 PF01510 N-acetylmuramoyl-L-alanine amidase JX000_RS07890 PF08460 Bacterial SH3 domain JX000_RS07990 PF00574 Clp protease JX000_RS08095 PF04851 Type III restriction enzyme, res subunit JX000_RS08095 PF02151 UvrB/uvrC motif JX000_RS08095 PF12344 Ultra-violet resistance protein B JX000_RS08095 PF17757 UvrB interaction domain JX000_RS08095 PF00271 Helicase conserved C-terminal domain JX000_RS08170 PF00589 Phage integrase family JX000_RS08170 PF14659 Phage integrase, N-terminal SAM-like domain JX000_RS08180 PF01725 Ham1 family JX000_RS08185 PF01177 Asp/Glu/Hydantoin racemase JX000_RS08190 PF13183 4Fe-4S dicluster domain JX000_RS08190 PF13085 2Fe-2S iron-sulfur cluster binding domain JX000_RS08195 PF02910 Fumarate reductase flavoprotein C-term JX000_RS08195 PF00890 FAD binding domain JX000_RS08200 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JX000_RS08205 PF08459 UvrC Helix-hairpin-helix N-terminal JX000_RS08205 PF02151 UvrB/uvrC motif JX000_RS08205 PF01541 GIY-YIG catalytic domain JX000_RS08210 PF00085 Thioredoxin JX000_RS08215 PF00488 MutS domain V JX000_RS08215 PF01713 Smr domain JX000_RS08220 PF02811 PHP domain JX000_RS08220 PF14716 Helix-hairpin-helix domain JX000_RS08220 PF14791 DNA polymerase beta thumb JX000_RS08230 PF05164 Cell division protein ZapA JX000_RS08235 PF01351 Ribonuclease HII JX000_RS08235 PF11858 Domain of unknown function (DUF3378) JX000_RS08240 PF03147 Ferredoxin-fold anticodon binding domain JX000_RS08240 PF03484 tRNA synthetase B5 domain JX000_RS08240 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JX000_RS08240 PF03483 B3/4 domain JX000_RS08240 PF01588 Putative tRNA binding domain JX000_RS08245 PF01409 tRNA synthetases class II core domain (F) JX000_RS08245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JX000_RS08250 PF08032 RNA 2'-O ribose methyltransferase substrate binding JX000_RS08250 PF00588 SpoU rRNA Methylase family JX000_RS08255 PF01783 Ribosomal L32p protein family JX000_RS08265 PF05636 HIGH Nucleotidyl Transferase JX000_RS08270 PF01467 Cytidylyltransferase-like JX000_RS08285 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JX000_RS08290 PF03009 Glycerophosphoryl diester phosphodiesterase family JX000_RS08295 PF06133 Control of competence regulator ComK, YlbF/YmcA JX000_RS08310 PF01040 UbiA prenyltransferase family JX000_RS08315 PF02628 Cytochrome oxidase assembly protein JX000_RS08320 PF00364 Biotin-requiring enzyme JX000_RS08320 PF02436 Conserved carboxylase domain JX000_RS08320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JX000_RS08320 PF02785 Biotin carboxylase C-terminal domain JX000_RS08320 PF00289 Biotin carboxylase, N-terminal domain JX000_RS08320 PF00682 HMGL-like JX000_RS08325 PF01098 Cell cycle protein JX000_RS08330 PF07408 Protein of unknown function (DUF1507) JX000_RS08340 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) JX000_RS08345 PF00679 Elongation factor G C-terminus JX000_RS08345 PF14492 Elongation Factor G, domain II JX000_RS08345 PF00009 Elongation factor Tu GTP binding domain JX000_RS08345 PF03144 Elongation factor Tu domain 2 JX000_RS08355 PF00459 Inositol monophosphatase family JX000_RS08360 PF06335 Protein of unknown function (DUF1054) JX000_RS08365 PF01566 Natural resistance-associated macrophage protein JX000_RS08380 PF13416 Bacterial extracellular solute-binding protein JX000_RS08385 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS08390 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS08395 PF00005 ABC transporter JX000_RS08395 PF08402 TOBE domain JX000_RS08405 PF05256 Uncharacterised protein family (UPF0223) JX000_RS08410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX000_RS08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS08415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JX000_RS08415 PF00364 Biotin-requiring enzyme JX000_RS08415 PF02817 e3 binding domain JX000_RS08420 PF02779 Transketolase, pyrimidine binding domain JX000_RS08420 PF02780 Transketolase, C-terminal domain JX000_RS08425 PF00676 Dehydrogenase E1 component JX000_RS08435 PF01327 Polypeptide deformylase JX000_RS08440 PF07288 Protein of unknown function (DUF1447) JX000_RS08445 PF00753 Metallo-beta-lactamase superfamily JX000_RS08445 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JX000_RS08445 PF17770 Ribonuclease J C-terminal domain JX000_RS08450 PF02080 TrkA-C domain JX000_RS08450 PF02254 TrkA-N domain JX000_RS08455 PF02322 Cytochrome bd terminal oxidase subunit II JX000_RS08460 PF01654 Cytochrome bd terminal oxidase subunit I JX000_RS08470 PF00391 PEP-utilising enzyme, mobile domain JX000_RS08470 PF05524 PEP-utilising enzyme, N-terminal JX000_RS08470 PF02896 PEP-utilising enzyme, TIM barrel domain JX000_RS08475 PF00381 PTS HPr component phosphorylation site JX000_RS08485 PF17785 PUA-like domain JX000_RS08485 PF10672 S-adenosylmethionine-dependent methyltransferase JX000_RS08505 PF00005 ABC transporter JX000_RS08510 PF02361 Cobalt transport protein JX000_RS08515 PF02844 Phosphoribosylglycinamide synthetase, N domain JX000_RS08515 PF02843 Phosphoribosylglycinamide synthetase, C domain JX000_RS08515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JX000_RS08520 PF01808 AICARFT/IMPCHase bienzyme JX000_RS08520 PF02142 MGS-like domain JX000_RS08525 PF00551 Formyl transferase JX000_RS08530 PF02769 AIR synthase related protein, C-terminal domain JX000_RS08530 PF00586 AIR synthase related protein, N-terminal domain JX000_RS08535 PF13537 Glutamine amidotransferase domain JX000_RS08535 PF00156 Phosphoribosyl transferase domain JX000_RS08540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JX000_RS08540 PF02769 AIR synthase related protein, C-terminal domain JX000_RS08540 PF00586 AIR synthase related protein, N-terminal domain JX000_RS08550 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JX000_RS08555 PF01259 SAICAR synthetase JX000_RS08560 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JX000_RS08560 PF02222 ATP-grasp domain JX000_RS08560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS08565 PF00731 AIR carboxylase JX000_RS08570 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JX000_RS08570 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JX000_RS08575 PF00970 Oxidoreductase FAD-binding domain JX000_RS08575 PF00175 Oxidoreductase NAD-binding domain JX000_RS08575 PF00042 Globin JX000_RS08585 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JX000_RS08590 PF00115 Cytochrome C and Quinol oxidase polypeptide I JX000_RS08595 PF00510 Cytochrome c oxidase subunit III JX000_RS08600 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JX000_RS08605 PF01156 Inosine-uridine preferring nucleoside hydrolase JX000_RS08610 PF00144 Beta-lactamase JX000_RS08615 PF03816 Cell envelope-related transcriptional attenuator domain JX000_RS08620 PF10804 Protein of unknown function (DUF2538) JX000_RS08625 PF13673 Acetyltransferase (GNAT) domain JX000_RS08630 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JX000_RS08630 PF13457 GW (Gly-Tryp) dipeptide domain JX000_RS08640 PF01757 Acyltransferase family JX000_RS08645 PF00155 Aminotransferase class I and II JX000_RS08650 PF00378 Enoyl-CoA hydratase/isomerase JX000_RS08655 PF12697 Alpha/beta hydrolase family JX000_RS08660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS08660 PF16582 Middle domain of thiamine pyrophosphate JX000_RS08660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS08665 PF00425 chorismate binding enzyme JX000_RS08670 PF01040 UbiA prenyltransferase family JX000_RS08680 PF05154 TM2 domain JX000_RS08710 PF03099 Biotin/lipoate A/B protein ligase family JX000_RS08710 PF10437 Bacterial lipoate protein ligase C-terminus JX000_RS08715 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) JX000_RS08730 PF02386 Cation transport protein JX000_RS08735 PF13180 PDZ domain JX000_RS08740 PF03741 Integral membrane protein TerC family JX000_RS08745 PF00009 Elongation factor Tu GTP binding domain JX000_RS08745 PF03144 Elongation factor Tu domain 2 JX000_RS08745 PF16658 Class II release factor RF3, C-terminal domain JX000_RS08755 PF01225 Mur ligase family, catalytic domain JX000_RS08755 PF08245 Mur ligase middle domain JX000_RS08755 PF02875 Mur ligase family, glutamate ligase domain JX000_RS08760 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase JX000_RS08760 PF04101 Glycosyltransferase family 28 C-terminal domain JX000_RS08765 PF07690 Major Facilitator Superfamily JX000_RS08775 PF00756 Putative esterase JX000_RS08780 PF01235 Sodium:alanine symporter family JX000_RS08785 PF01594 AI-2E family transporter JX000_RS08795 PF00999 Sodium/hydrogen exchanger family JX000_RS08795 PF02080 TrkA-C domain JX000_RS08795 PF02254 TrkA-N domain JX000_RS08800 PF00571 CBS domain JX000_RS08800 PF01769 Divalent cation transporter JX000_RS08800 PF03448 MgtE intracellular N domain JX000_RS08805 PF00849 RNA pseudouridylate synthase JX000_RS08810 PF01513 ATP-NAD kinase JX000_RS08815 PF04607 Region found in RelA / SpoT proteins JX000_RS08830 PF01152 Bacterial-like globin JX000_RS08840 PF01432 Peptidase family M3 JX000_RS08840 PF08439 Oligopeptidase F JX000_RS08850 PF05389 Negative regulator of genetic competence (MecA) JX000_RS08855 PF03960 ArsC family JX000_RS08860 PF00579 tRNA synthetases class I (W and Y) JX000_RS08865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JX000_RS08870 PF00005 ABC transporter JX000_RS08870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JX000_RS08875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JX000_RS08875 PF00005 ABC transporter JX000_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS08880 PF12911 N-terminal TM domain of oligopeptide transport permease C JX000_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS08895 PF02801 Beta-ketoacyl synthase, C-terminal domain JX000_RS08895 PF00109 Beta-ketoacyl synthase, N-terminal domain JX000_RS08900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JX000_RS08900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JX000_RS08910 PF02861 Clp amino terminal domain, pathogenicity island component JX000_RS08910 PF10431 C-terminal, D2-small domain, of ClpB protein JX000_RS08910 PF00004 ATPase family associated with various cellular activities (AAA) JX000_RS08910 PF17871 AAA lid domain JX000_RS08910 PF07724 AAA domain (Cdc48 subfamily) JX000_RS08915 PF01757 Acyltransferase family JX000_RS08920 PF01883 Iron-sulfur cluster assembly protein JX000_RS08930 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS08930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JX000_RS08935 PF07457 Protein of unknown function (DUF1516) JX000_RS08940 PF01557 Fumarylacetoacetate (FAA) hydrolase family JX000_RS08945 PF12705 PD-(D/E)XK nuclease superfamily JX000_RS08945 PF00580 UvrD/REP helicase N-terminal domain JX000_RS08945 PF13361 UvrD-like helicase C-terminal domain JX000_RS08950 PF13361 UvrD-like helicase C-terminal domain JX000_RS08950 PF12705 PD-(D/E)XK nuclease superfamily JX000_RS08955 PF10502 Signal peptidase, peptidase S26 JX000_RS08960 PF10502 Signal peptidase, peptidase S26 JX000_RS08965 PF09335 SNARE associated Golgi protein JX000_RS08970 PF00342 Phosphoglucose isomerase JX000_RS08975 PF00764 Arginosuccinate synthase JX000_RS08980 PF00206 Lyase JX000_RS08980 PF14698 Argininosuccinate lyase C-terminal JX000_RS08985 PF03009 Glycerophosphoryl diester phosphodiesterase family JX000_RS08990 PF03009 Glycerophosphoryl diester phosphodiesterase family JX000_RS09000 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JX000_RS09000 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JX000_RS09005 PF00202 Aminotransferase class-III JX000_RS09010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JX000_RS09015 PF00575 S1 RNA binding domain JX000_RS09020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JX000_RS09030 PF00361 Proton-conducting membrane transporter JX000_RS09030 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JX000_RS09030 PF13244 Domain of unknown function (DUF4040) JX000_RS09035 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JX000_RS09040 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JX000_RS09045 PF00361 Proton-conducting membrane transporter JX000_RS09050 PF01899 Na+/H+ ion antiporter subunit JX000_RS09055 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JX000_RS09060 PF03334 Na+/H+ antiporter subunit JX000_RS09065 PF06968 Biotin and Thiamin Synthesis associated domain JX000_RS09065 PF04055 Radical SAM superfamily JX000_RS09075 PF03061 Thioesterase superfamily JX000_RS09080 PF03553 Na+/H+ antiporter family JX000_RS09080 PF13726 Na+-H+ antiporter family JX000_RS09085 PF02789 Cytosol aminopeptidase family, N-terminal domain JX000_RS09085 PF00883 Cytosol aminopeptidase family, catalytic domain JX000_RS09090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS09095 PF01521 Iron-sulphur cluster biosynthesis JX000_RS09100 PF07293 Protein of unknown function (DUF1450) JX000_RS09105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS09110 PF07315 Protein of unknown function (DUF1462) JX000_RS09115 PF01106 NifU-like domain JX000_RS09120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS09120 PF03466 LysR substrate binding domain JX000_RS09125 PF03601 Conserved hypothetical protein 698 JX000_RS09130 PF04914 DltD protein JX000_RS09135 PF00550 Phosphopantetheine attachment site JX000_RS09140 PF03062 MBOAT, membrane-bound O-acyltransferase family JX000_RS09145 PF13193 AMP-binding enzyme C-terminal domain JX000_RS09145 PF00501 AMP-binding enzyme JX000_RS09155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JX000_RS09155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JX000_RS09160 PF13344 Haloacid dehalogenase-like hydrolase JX000_RS09165 PF01934 Protein of unknown function DUF86 JX000_RS09175 PF06265 Protein of unknown function (DUF1027) JX000_RS09180 PF04055 Radical SAM superfamily JX000_RS09180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JX000_RS09185 PF02872 5'-nucleotidase, C-terminal domain JX000_RS09190 PF01925 Sulfite exporter TauE/SafE JX000_RS09195 PF01904 Protein of unknown function DUF72 JX000_RS09200 PF03060 Nitronate monooxygenase JX000_RS09205 PF01595 Cyclin M transmembrane N-terminal domain JX000_RS09205 PF03471 Transporter associated domain JX000_RS09205 PF00571 CBS domain JX000_RS09210 PF01458 Uncharacterized protein family (UPF0051) JX000_RS09215 PF01592 NifU-like N terminal domain JX000_RS09220 PF00266 Aminotransferase class-V JX000_RS09225 PF01458 Uncharacterized protein family (UPF0051) JX000_RS09230 PF00005 ABC transporter JX000_RS09240 PF05532 CsbD-like JX000_RS09245 PF03180 NLPA lipoprotein JX000_RS09250 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS09255 PF00005 ABC transporter JX000_RS09255 PF09383 NIL domain JX000_RS09265 PF01751 Toprim domain JX000_RS09270 PF01597 Glycine cleavage H-protein JX000_RS09275 PF03960 ArsC family JX000_RS09280 PF00085 Thioredoxin JX000_RS09290 PF01487 Type I 3-dehydroquinase JX000_RS09295 PF02566 OsmC-like protein JX000_RS09305 PF00300 Histidine phosphatase superfamily (branch 1) JX000_RS09340 PF05908 Poly-gamma-glutamate hydrolase JX000_RS09365 PF00313 'Cold-shock' DNA-binding domain JX000_RS09375 PF16916 Dimerisation domain of Zinc Transporter JX000_RS09375 PF01545 Cation efflux family JX000_RS09390 PF00248 Aldo/keto reductase family JX000_RS09440 PF01668 SmpB protein JX000_RS09445 PF00773 RNB domain JX000_RS09445 PF17876 Cold shock domain JX000_RS09445 PF08206 Ribonuclease B OB domain JX000_RS09445 PF00575 S1 RNA binding domain JX000_RS09450 PF12146 Serine aminopeptidase, S33 JX000_RS09455 PF03840 Preprotein translocase SecG subunit JX000_RS09465 PF00113 Enolase, C-terminal TIM barrel domain JX000_RS09465 PF03952 Enolase, N-terminal domain JX000_RS09470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JX000_RS09470 PF01676 Metalloenzyme superfamily JX000_RS09475 PF00121 Triosephosphate isomerase JX000_RS09480 PF00162 Phosphoglycerate kinase JX000_RS09485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JX000_RS09485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JX000_RS09490 PF04198 Putative sugar-binding domain JX000_RS09505 PF08338 Domain of unknown function (DUF1731) JX000_RS09505 PF01370 NAD dependent epimerase/dehydratase family JX000_RS09515 PF00574 Clp protease JX000_RS09555 PF03979 Sigma-70 factor, region 1.1 JX000_RS09555 PF00140 Sigma-70 factor, region 1.2 JX000_RS09555 PF04542 Sigma-70 region 2 JX000_RS09555 PF04539 Sigma-70 region 3 JX000_RS09555 PF04545 Sigma-70, region 4 JX000_RS09570 PF10298 WhiA N-terminal LAGLIDADG-like domain JX000_RS09570 PF14527 WhiA LAGLIDADG-like domain JX000_RS09570 PF02650 WhiA C-terminal HTH domain JX000_RS09575 PF01933 Uncharacterised protein family UPF0052 JX000_RS09580 PF03668 P-loop ATPase protein family JX000_RS09585 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS09595 PF14602 Hexapeptide repeat of succinyl-transferase JX000_RS09600 PF01790 Prolipoprotein diacylglyceryl transferase JX000_RS09605 PF02603 HPr Serine kinase N terminus JX000_RS09605 PF07475 HPr Serine kinase C-terminal domain JX000_RS09610 PF17760 UvrA interaction domain JX000_RS09610 PF00005 ABC transporter JX000_RS09610 PF17755 UvrA DNA-binding domain JX000_RS09615 PF12344 Ultra-violet resistance protein B JX000_RS09615 PF17757 UvrB interaction domain JX000_RS09615 PF04851 Type III restriction enzyme, res subunit JX000_RS09615 PF02151 UvrB/uvrC motif JX000_RS09615 PF00271 Helicase conserved C-terminal domain JX000_RS09630 PF05257 CHAP domain JX000_RS09630 PF01476 LysM domain JX000_RS09640 PF02810 SEC-C motif JX000_RS09640 PF07517 SecA DEAD-like domain JX000_RS09640 PF01043 SecA preprotein cross-linking domain JX000_RS09640 PF07516 SecA Wing and Scaffold domain JX000_RS09645 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JX000_RS09645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JX000_RS09655 PF04851 Type III restriction enzyme, res subunit JX000_RS09655 PF00271 Helicase conserved C-terminal domain JX000_RS09660 PF02645 Uncharacterised protein, DegV family COG1307 JX000_RS09665 PF09186 Domain of unknown function (DUF1949) JX000_RS09665 PF01205 Uncharacterized protein family UPF0029 JX000_RS09670 PF00953 Glycosyl transferase family 4 JX000_RS09675 PF07694 5TMR of 5TMR-LYT JX000_RS09675 PF00990 Diguanylate cyclase, GGDEF domain JX000_RS09690 PF07687 Peptidase dimerisation domain JX000_RS09690 PF01546 Peptidase family M20/M25/M40 JX000_RS09695 PF02595 Glycerate kinase family JX000_RS09715 PF01565 FAD binding domain JX000_RS09715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JX000_RS09730 PF00005 ABC transporter JX000_RS09735 PF01032 FecCD transport family JX000_RS09740 PF01032 FecCD transport family JX000_RS09745 PF00268 Ribonucleotide reductase, small chain JX000_RS09750 PF02867 Ribonucleotide reductase, barrel domain JX000_RS09750 PF08343 Ribonucleotide reductase N-terminal JX000_RS09750 PF00317 Ribonucleotide reductase, all-alpha domain JX000_RS09755 PF07972 NrdI Flavodoxin like JX000_RS09765 PF14489 QueF-like protein JX000_RS09770 PF00854 POT family JX000_RS09775 PF00781 Diacylglycerol kinase catalytic domain JX000_RS09780 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) JX000_RS09785 PF00155 Aminotransferase class I and II JX000_RS09790 PF00528 Binding-protein-dependent transport system inner membrane component JX000_RS09795 PF00571 CBS domain JX000_RS09795 PF00005 ABC transporter JX000_RS09800 PF09382 RQC domain JX000_RS09800 PF00570 HRDC domain JX000_RS09800 PF00271 Helicase conserved C-terminal domain JX000_RS09800 PF00270 DEAD/DEAH box helicase JX000_RS09800 PF16124 RecQ zinc-binding JX000_RS09805 PF00005 ABC transporter JX000_RS09805 PF12848 ABC transporter JX000_RS09805 PF16326 ABC transporter C-terminal domain JX000_RS09810 PF02535 ZIP Zinc transporter JX000_RS09815 PF00884 Sulfatase JX000_RS09835 PF01063 Amino-transferase class IV JX000_RS09840 PF04715 Anthranilate synthase component I, N terminal region JX000_RS09840 PF00425 chorismate binding enzyme JX000_RS09845 PF00117 Glutamine amidotransferase class-I JX000_RS09845 PF00591 Glycosyl transferase family, a/b domain JX000_RS09845 PF02885 Glycosyl transferase family, helical bundle domain JX000_RS09850 PF06508 Queuosine biosynthesis protein QueC JX000_RS09855 PF01242 6-pyruvoyl tetrahydropterin synthase JX000_RS09860 PF04055 Radical SAM superfamily JX000_RS09870 PF00535 Glycosyl transferase family 2 JX000_RS09875 PF00248 Aldo/keto reductase family JX000_RS09880 PF01595 Cyclin M transmembrane N-terminal domain JX000_RS09880 PF00571 CBS domain JX000_RS09880 PF03471 Transporter associated domain JX000_RS09885 PF01979 Amidohydrolase family JX000_RS09890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JX000_RS09890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JX000_RS09895 PF00294 pfkB family carbohydrate kinase JX000_RS09900 PF08220 DeoR-like helix-turn-helix domain JX000_RS09900 PF00455 DeoR C terminal sensor domain JX000_RS09905 PF04073 Aminoacyl-tRNA editing domain JX000_RS09915 PF07690 Major Facilitator Superfamily JX000_RS09930 PF03441 FAD binding domain of DNA photolyase JX000_RS09930 PF00875 DNA photolyase JX000_RS09935 PF00939 Sodium:sulfate symporter transmembrane region JX000_RS09940 PF00056 lactate/malate dehydrogenase, NAD binding domain JX000_RS09940 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JX000_RS09950 PF00248 Aldo/keto reductase family JX000_RS09955 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX000_RS09955 PF07683 Cobalamin synthesis protein cobW C-terminal domain JX000_RS09960 PF01047 MarR family JX000_RS09965 PF00005 ABC transporter JX000_RS09965 PF00664 ABC transporter transmembrane region JX000_RS09970 PF00005 ABC transporter JX000_RS09970 PF00664 ABC transporter transmembrane region JX000_RS09975 PF02673 Bacitracin resistance protein BacA JX000_RS09985 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JX000_RS09990 PF03641 Possible lysine decarboxylase JX000_RS10005 PF13302 Acetyltransferase (GNAT) domain JX000_RS10030 PF04306 Protein of unknown function (DUF456) JX000_RS10035 PF07690 Major Facilitator Superfamily JX000_RS10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS10040 PF03466 LysR substrate binding domain JX000_RS10055 PF01709 Transcriptional regulator JX000_RS10065 PF07883 Cupin domain JX000_RS10065 PF12833 Helix-turn-helix domain JX000_RS10075 PF05257 CHAP domain JX000_RS10075 PF01476 LysM domain JX000_RS10080 PF01384 Phosphate transporter family JX000_RS10085 PF01865 Protein of unknown function DUF47 JX000_RS10095 PF02687 FtsX-like permease family JX000_RS10100 PF00005 ABC transporter JX000_RS10105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JX000_RS10110 PF00072 Response regulator receiver domain JX000_RS10110 PF00486 Transcriptional regulatory protein, C terminal JX000_RS10115 PF01370 NAD dependent epimerase/dehydratase family JX000_RS10125 PF07859 alpha/beta hydrolase fold JX000_RS10140 PF03610 PTS system fructose IIA component JX000_RS10145 PF02734 DAK2 domain JX000_RS10150 PF02733 Dak1 domain JX000_RS10155 PF01032 FecCD transport family JX000_RS10160 PF01032 FecCD transport family JX000_RS10165 PF00005 ABC transporter JX000_RS10170 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JX000_RS10170 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JX000_RS10175 PF07662 Na+ dependent nucleoside transporter C-terminus JX000_RS10175 PF01773 Na+ dependent nucleoside transporter N-terminus JX000_RS10180 PF00664 ABC transporter transmembrane region JX000_RS10180 PF00005 ABC transporter JX000_RS10185 PF00768 D-alanyl-D-alanine carboxypeptidase JX000_RS10185 PF07943 Penicillin-binding protein 5, C-terminal domain JX000_RS10190 PF01467 Cytidylyltransferase-like JX000_RS10195 PF00535 Glycosyl transferase family 2 JX000_RS10200 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JX000_RS10205 PF01061 ABC-2 type transporter JX000_RS10210 PF00005 ABC transporter JX000_RS10215 PF03808 Glycosyl transferase WecB/TagA/CpsF family JX000_RS10225 PF01325 Iron dependent repressor, N-terminal DNA binding domain JX000_RS10225 PF02742 Iron dependent repressor, metal binding and dimerisation domain JX000_RS10225 PF18357 Diphteria toxin repressor SH3 domain JX000_RS10230 PF00005 ABC transporter JX000_RS10235 PF00950 ABC 3 transport family JX000_RS10240 PF01297 Zinc-uptake complex component A periplasmic JX000_RS10245 PF00999 Sodium/hydrogen exchanger family JX000_RS10250 PF03334 Na+/H+ antiporter subunit JX000_RS10255 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JX000_RS10260 PF01899 Na+/H+ ion antiporter subunit JX000_RS10265 PF00361 Proton-conducting membrane transporter JX000_RS10270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JX000_RS10275 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JX000_RS10280 PF13244 Domain of unknown function (DUF4040) JX000_RS10280 PF00361 Proton-conducting membrane transporter JX000_RS10280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JX000_RS10315 PF00561 alpha/beta hydrolase fold JX000_RS10335 PF13419 Haloacid dehalogenase-like hydrolase JX000_RS10340 PF01032 FecCD transport family JX000_RS10345 PF01497 Periplasmic binding protein JX000_RS10350 PF01554 MatE JX000_RS10360 PF10576 Iron-sulfur binding domain of endonuclease III JX000_RS10360 PF00633 Helix-hairpin-helix motif JX000_RS10360 PF00730 HhH-GPD superfamily base excision DNA repair protein JX000_RS10365 PF00750 tRNA synthetases class I (R) JX000_RS10365 PF05746 DALR anticodon binding domain JX000_RS10365 PF03485 Arginyl tRNA synthetase N terminal domain JX000_RS10385 PF08741 YwhD family JX000_RS10390 PF01966 HD domain JX000_RS10395 PF00958 GMP synthase C terminal domain JX000_RS10395 PF03352 Methyladenine glycosylase JX000_RS10395 PF13673 Acetyltransferase (GNAT) domain JX000_RS10395 PF13302 Acetyltransferase (GNAT) domain JX000_RS10395 PF00117 Glutamine amidotransferase class-I JX000_RS10400 PF03358 NADPH-dependent FMN reductase JX000_RS10405 PF00248 Aldo/keto reductase family JX000_RS10410 PF07293 Protein of unknown function (DUF1450) JX000_RS10415 PF00288 GHMP kinases N terminal domain JX000_RS10415 PF08544 GHMP kinases C terminal JX000_RS10425 PF00288 GHMP kinases N terminal domain JX000_RS10425 PF10509 Galactokinase galactose-binding signature JX000_RS10425 PF08544 GHMP kinases C terminal JX000_RS10430 PF03099 Biotin/lipoate A/B protein ligase family JX000_RS10435 PF01515 Phosphate acetyl/butaryl transferase JX000_RS10440 PF06778 Chlorite dismutase JX000_RS10460 PF04241 Protein of unknown function (DUF423) JX000_RS10470 PF03167 Uracil DNA glycosylase superfamily JX000_RS10475 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JX000_RS10480 PF08543 Phosphomethylpyrimidine kinase JX000_RS10485 PF17412 Family of unknown function JX000_RS10490 PF05543 Staphopain peptidase C47 JX000_RS10490 PF14731 Staphopain proregion JX000_RS10500 PF07690 Major Facilitator Superfamily JX000_RS10510 PF01380 SIS domain JX000_RS10515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JX000_RS10520 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JX000_RS10530 PF02585 GlcNAc-PI de-N-acetylase JX000_RS10535 PF02649 Type I GTP cyclohydrolase folE2 JX000_RS10540 PF07690 Major Facilitator Superfamily JX000_RS10545 PF13439 Glycosyltransferase Family 4 JX000_RS10545 PF00534 Glycosyl transferases group 1 JX000_RS10555 PF04650 YSIRK type signal peptide JX000_RS10555 PF00746 LPXTG cell wall anchor motif JX000_RS10555 PF17210 SdrD B-like domain JX000_RS10555 PF10425 C-terminus of bacterial fibrinogen-binding adhesin JX000_RS10555 PF17961 Bacterial Ig domain JX000_RS10560 PF03358 NADPH-dependent FMN reductase JX000_RS10570 PF14437 MafB19-like deaminase JX000_RS10575 PF01712 Deoxynucleoside kinase JX000_RS10580 PF01712 Deoxynucleoside kinase JX000_RS10590 PF01063 Amino-transferase class IV JX000_RS10595 PF01370 NAD dependent epimerase/dehydratase family JX000_RS10600 PF02872 5'-nucleotidase, C-terminal domain JX000_RS10600 PF00149 Calcineurin-like phosphoesterase JX000_RS10610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JX000_RS10610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JX000_RS10615 PF08240 Alcohol dehydrogenase GroES-like domain JX000_RS10615 PF00107 Zinc-binding dehydrogenase JX000_RS10620 PF07690 Major Facilitator Superfamily JX000_RS10625 PF08220 DeoR-like helix-turn-helix domain JX000_RS10625 PF00455 DeoR C terminal sensor domain JX000_RS10630 PF02423 Ornithine cyclodeaminase/mu-crystallin family JX000_RS10640 PF00155 Aminotransferase class I and II JX000_RS10645 PF07687 Peptidase dimerisation domain JX000_RS10645 PF01546 Peptidase family M20/M25/M40 JX000_RS10650 PF03144 Elongation factor Tu domain 2 JX000_RS10650 PF03143 Elongation factor Tu C-terminal domain JX000_RS10650 PF00009 Elongation factor Tu GTP binding domain JX000_RS10655 PF03764 Elongation factor G, domain IV JX000_RS10655 PF14492 Elongation Factor G, domain II JX000_RS10655 PF03144 Elongation factor Tu domain 2 JX000_RS10655 PF00679 Elongation factor G C-terminus JX000_RS10655 PF00009 Elongation factor Tu GTP binding domain JX000_RS10660 PF00177 Ribosomal protein S7p/S5e JX000_RS10665 PF00164 Ribosomal protein S12/S23 JX000_RS10670 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JX000_RS10675 PF00623 RNA polymerase Rpb1, domain 2 JX000_RS10675 PF04983 RNA polymerase Rpb1, domain 3 JX000_RS10675 PF04997 RNA polymerase Rpb1, domain 1 JX000_RS10675 PF04998 RNA polymerase Rpb1, domain 5 JX000_RS10675 PF05000 RNA polymerase Rpb1, domain 4 JX000_RS10680 PF00562 RNA polymerase Rpb2, domain 6 JX000_RS10680 PF04563 RNA polymerase beta subunit JX000_RS10680 PF10385 RNA polymerase beta subunit external 1 domain JX000_RS10680 PF04560 RNA polymerase Rpb2, domain 7 JX000_RS10680 PF04565 RNA polymerase Rpb2, domain 3 JX000_RS10680 PF04561 RNA polymerase Rpb2, domain 2 JX000_RS10685 PF05175 Methyltransferase small domain JX000_RS10690 PF00542 Ribosomal protein L7/L12 C-terminal domain JX000_RS10690 PF16320 Ribosomal protein L7/L12 dimerisation domain JX000_RS10695 PF00466 Ribosomal protein L10 JX000_RS10700 PF00687 Ribosomal protein L1p/L10e family JX000_RS10705 PF00298 Ribosomal protein L11, RNA binding domain JX000_RS10705 PF03946 Ribosomal protein L11, N-terminal domain JX000_RS10710 PF02357 Transcription termination factor nusG JX000_RS10715 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JX000_RS10720 PF00471 Ribosomal protein L33 JX000_RS10730 PF05991 YacP-like NYN domain JX000_RS10735 PF08032 RNA 2'-O ribose methyltransferase substrate binding JX000_RS10735 PF00588 SpoU rRNA Methylase family JX000_RS10740 PF00636 Ribonuclease III domain JX000_RS10745 PF01406 tRNA synthetases class I (C) catalytic domain JX000_RS10745 PF09190 DALR domain JX000_RS10750 PF00132 Bacterial transferase hexapeptide (six repeats) JX000_RS10755 PF00749 tRNA synthetases class I (E and Q), catalytic domain JX000_RS10765 PF18073 Rubredoxin metal binding domain JX000_RS10770 PF00004 ATPase family associated with various cellular activities (AAA) JX000_RS10770 PF02861 Clp amino terminal domain, pathogenicity island component JX000_RS10770 PF17871 AAA lid domain JX000_RS10770 PF07724 AAA domain (Cdc48 subfamily) JX000_RS10770 PF10431 C-terminal, D2-small domain, of ClpB protein JX000_RS10775 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain JX000_RS10780 PF02151 UvrB/uvrC motif JX000_RS10785 PF17727 CtsR C-terminal dimerization domain JX000_RS10785 PF05848 CtsR N-terminal HTH domain JX000_RS10790 PF07662 Na+ dependent nucleoside transporter C-terminus JX000_RS10790 PF01773 Na+ dependent nucleoside transporter N-terminus JX000_RS10795 PF01174 SNO glutamine amidotransferase family JX000_RS10800 PF01680 SOR/SNZ family JX000_RS10805 PF00155 Aminotransferase class I and II JX000_RS10805 PF00392 Bacterial regulatory proteins, gntR family JX000_RS10890 PF01336 OB-fold nucleic acid binding domain JX000_RS10890 PF00152 tRNA synthetases class II (D, K and N) JX000_RS10895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JX000_RS10900 PF02152 Dihydroneopterin aldolase JX000_RS10905 PF00809 Pterin binding enzyme JX000_RS10910 PF00291 Pyridoxal-phosphate dependent enzyme JX000_RS10915 PF01430 Hsp33 protein JX000_RS10920 PF06480 FtsH Extracellular JX000_RS10920 PF00004 ATPase family associated with various cellular activities (AAA) JX000_RS10920 PF17862 AAA+ lid domain JX000_RS10920 PF01434 Peptidase family M41 JX000_RS10925 PF00156 Phosphoribosyl transferase domain JX000_RS10930 PF01171 PP-loop family JX000_RS10930 PF11734 TilS substrate C-terminal domain JX000_RS10935 PF00575 S1 RNA binding domain JX000_RS10945 PF01479 S4 domain JX000_RS10950 PF03819 MazG nucleotide pyrophosphohydrolase domain JX000_RS10950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX000_RS10955 PF14667 Polysaccharide biosynthesis C-terminal domain JX000_RS10955 PF01943 Polysaccharide biosynthesis protein JX000_RS10960 PF02559 CarD-like/TRCF domain JX000_RS10960 PF00270 DEAD/DEAH box helicase JX000_RS10960 PF00271 Helicase conserved C-terminal domain JX000_RS10960 PF03461 TRCF domain JX000_RS10960 PF17757 UvrB interaction domain JX000_RS10965 PF01195 Peptidyl-tRNA hydrolase JX000_RS10970 PF01386 Ribosomal L25p family JX000_RS10970 PF14693 Ribosomal protein TL5, C-terminal domain JX000_RS10975 PF14572 Phosphoribosyl synthetase-associated domain JX000_RS10975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JX000_RS10980 PF00132 Bacterial transferase hexapeptide (six repeats) JX000_RS10980 PF00483 Nucleotidyl transferase JX000_RS10985 PF04026 SpoVG JX000_RS10990 PF01042 Endoribonuclease L-PSP JX000_RS10995 PF00156 Phosphoribosyl transferase domain JX000_RS10995 PF09182 Bacterial purine repressor, N-terminal JX000_RS11000 PF00288 GHMP kinases N terminal domain JX000_RS11000 PF08544 GHMP kinases C terminal JX000_RS11005 PF06257 Biofilm formation stimulator VEG JX000_RS11010 PF00398 Ribosomal RNA adenine dimethylase JX000_RS11015 PF13331 Domain of unknown function (DUF4093) JX000_RS11015 PF01751 Toprim domain JX000_RS11020 PF01026 TatD related DNase JX000_RS11025 PF01588 Putative tRNA binding domain JX000_RS11025 PF08264 Anticodon-binding domain of tRNA JX000_RS11025 PF09334 tRNA synthetases class I (M) JX000_RS11030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JX000_RS11035 PF01541 GIY-YIG catalytic domain JX000_RS11040 PF05175 Methyltransferase small domain JX000_RS11045 PF06156 Initiation control protein YabA JX000_RS11050 PF04468 PSP1 C-terminal conserved region JX000_RS11055 PF09115 DNA polymerase III, delta subunit, C terminal JX000_RS11060 PF06153 Cyclic-di-AMP receptor JX000_RS11065 PF02223 Thymidylate kinase JX000_RS11070 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JX000_RS11070 PF01276 Orn/Lys/Arg decarboxylase, major domain JX000_RS11075 PF13302 Acetyltransferase (GNAT) domain JX000_RS11095 PF02132 RecR protein JX000_RS11095 PF13662 Toprim domain JX000_RS11100 PF02575 YbaB/EbfC DNA-binding family JX000_RS11105 PF12169 DNA polymerase III subunits gamma and tau domain III JX000_RS11120 PF00392 Bacterial regulatory proteins, gntR family JX000_RS11120 PF07702 UTRA domain JX000_RS11125 PF16657 Maltogenic Amylase, C-terminal domain JX000_RS11125 PF00128 Alpha amylase, catalytic domain JX000_RS11130 PF02378 Phosphotransferase system, EIIC JX000_RS11130 PF00367 phosphotransferase system, EIIB JX000_RS11140 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS11140 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JX000_RS11145 PF01645 Conserved region in glutamate synthase JX000_RS11145 PF04898 Glutamate synthase central domain JX000_RS11145 PF00310 Glutamine amidotransferases class-II JX000_RS11145 PF01493 GXGXG motif JX000_RS11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JX000_RS11150 PF03466 LysR substrate binding domain JX000_RS11165 PF13302 Acetyltransferase (GNAT) domain JX000_RS11170 PF00293 NUDIX domain JX000_RS11180 PF00534 Glycosyl transferases group 1 JX000_RS11180 PF09318 Glycosyl transferase 1 domain A JX000_RS11185 PF01370 NAD dependent epimerase/dehydratase family JX000_RS11190 PF05257 CHAP domain JX000_RS11190 PF01476 LysM domain JX000_RS11195 PF00313 'Cold-shock' DNA-binding domain JX000_RS11200 PF06993 Protein of unknown function (DUF1304) JX000_RS11210 PF07501 G5 domain JX000_RS11210 PF00746 LPXTG cell wall anchor motif JX000_RS11210 PF17041 E domain JX000_RS11210 PF04650 YSIRK type signal peptide JX000_RS11215 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JX000_RS11215 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JX000_RS11225 PF01047 MarR family JX000_RS11230 PF01053 Cys/Met metabolism PLP-dependent enzyme JX000_RS11235 PF00291 Pyridoxal-phosphate dependent enzyme JX000_RS11245 PF01965 DJ-1/PfpI family JX000_RS11250 PF01810 LysE type translocator JX000_RS11255 PF00209 Sodium:neurotransmitter symporter family JX000_RS11265 PF12146 Serine aminopeptidase, S33 JX000_RS11270 PF01569 PAP2 superfamily JX000_RS11285 PF10057 Uncharacterized conserved protein (DUF2294) JX000_RS11290 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) JX000_RS11295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JX000_RS11295 PF00361 Proton-conducting membrane transporter JX000_RS11310 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX000_RS11310 PF07683 Cobalamin synthesis protein cobW C-terminal domain JX000_RS11320 PF00117 Glutamine amidotransferase class-I JX000_RS11320 PF00958 GMP synthase C terminal domain JX000_RS11325 PF00478 IMP dehydrogenase / GMP reductase domain JX000_RS11325 PF00571 CBS domain JX000_RS11330 PF00860 Permease family JX000_RS11340 PF11181 Heat induced stress protein YflT JX000_RS11355 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JX000_RS11360 PF00375 Sodium:dicarboxylate symporter family JX000_RS11365 PF00881 Nitroreductase family JX000_RS11375 PF00005 ABC transporter JX000_RS11385 PF00578 AhpC/TSA family JX000_RS11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase JX000_RS11390 PF13192 Thioredoxin domain JX000_RS11415 PF01810 LysE type translocator JX000_RS11435 PF10668 Phage terminase small subunit JX000_RS11435 PF03592 Terminase small subunit JX000_RS11515 PF14659 Phage integrase, N-terminal SAM-like domain JX000_RS11515 PF00589 Phage integrase family JX000_RS11520 PF01084 Ribosomal protein S18 JX000_RS11525 PF00436 Single-strand binding protein family JX000_RS11530 PF01250 Ribosomal protein S6 JX000_RS11545 PF06071 Protein of unknown function (DUF933) JX000_RS11545 PF01926 50S ribosome-binding GTPase JX000_RS11550 PF06107 Bacterial protein of unknown function (DUF951) JX000_RS11555 PF00924 Mechanosensitive ion channel JX000_RS11560 PF17762 HTH domain found in ParB protein JX000_RS11560 PF02195 ParB-like nuclease domain JX000_RS11565 PF01053 Cys/Met metabolism PLP-dependent enzyme JX000_RS11570 PF01053 Cys/Met metabolism PLP-dependent enzyme JX000_RS11575 PF02574 Homocysteine S-methyltransferase JX000_RS11575 PF02219 Methylenetetrahydrofolate reductase JX000_RS11580 PF08267 Cobalamin-independent synthase, N-terminal domain JX000_RS11580 PF01717 Cobalamin-independent synthase, Catalytic domain JX000_RS11595 PF05257 CHAP domain JX000_RS11605 PF07690 Major Facilitator Superfamily JX000_RS11620 PF00580 UvrD/REP helicase N-terminal domain JX000_RS11620 PF13361 UvrD-like helicase C-terminal domain JX000_RS11630 PF00108 Thiolase, N-terminal domain JX000_RS11630 PF02803 Thiolase, C-terminal domain JX000_RS11635 PF02492 CobW/HypB/UreG, nucleotide-binding domain JX000_RS11635 PF07683 Cobalamin synthesis protein cobW C-terminal domain JX000_RS11665 PF01381 Helix-turn-helix JX000_RS11675 PF13302 Acetyltransferase (GNAT) domain JX000_RS11680 PF10502 Signal peptidase, peptidase S26 JX000_RS11695 PF00005 ABC transporter JX000_RS11700 PF02687 FtsX-like permease family JX000_RS11710 PF04650 YSIRK type signal peptide JX000_RS11725 PF13610 DDE domain JX000_RS11735 PF02687 FtsX-like permease family JX000_RS11735 PF12704 MacB-like periplasmic core domain JX000_RS11740 PF00005 ABC transporter JX000_RS11760 PF00440 Bacterial regulatory proteins, tetR family JX000_RS11760 PF16295 Tetracyclin repressor-like, C-terminal domain JX000_RS11775 PF17762 HTH domain found in ParB protein JX000_RS11775 PF02195 ParB-like nuclease domain JX000_RS11780 PF02527 rRNA small subunit methyltransferase G JX000_RS11785 PF13932 GidA associated domain JX000_RS11785 PF01134 Glucose inhibited division protein A JX000_RS11790 PF12631 MnmE helical domain JX000_RS11790 PF10396 GTP-binding protein TrmE N-terminus JX000_RS11790 PF01926 50S ribosome-binding GTPase JX000_RS11795 PF00825 Ribonuclease P JX000_RS11800 PF00468 Ribosomal protein L34 JX000_RS11815 PF01925 Sulfite exporter TauE/SafE JX000_RS11820 PF02583 Metal-sensitive transcriptional repressor JX000_RS11825 PF13686 DsrE/DsrF/DrsH-like family JX000_RS11830 PF00753 Metallo-beta-lactamase superfamily JX000_RS11835 PF00239 Resolvase, N terminal domain JX000_RS11835 PF02796 Helix-turn-helix domain of resolvase JX000_RS11840 PF00005 ABC transporter JX000_RS11845 PF00005 ABC transporter JX000_RS11855 PF00107 Zinc-binding dehydrogenase JX000_RS11855 PF13823 Alcohol dehydrogenase GroES-associated JX000_RS11855 PF08240 Alcohol dehydrogenase GroES-like domain JX000_RS11860 PF17760 UvrA interaction domain JX000_RS11860 PF17755 UvrA DNA-binding domain JX000_RS11860 PF00005 ABC transporter JX000_RS11865 PF01965 DJ-1/PfpI family JX000_RS11880 PF00205 Thiamine pyrophosphate enzyme, central domain JX000_RS11880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JX000_RS11880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JX000_RS11885 PF03306 Alpha-acetolactate decarboxylase JX000_RS11890 PF02652 L-lactate permease JX000_RS11895 PF06039 Malate:quinone oxidoreductase (Mqo) JX000_RS11900 PF13610 DDE domain JX000_RS11905 PF00474 Sodium:solute symporter family JX000_RS11940 PF13614 AAA domain JX000_RS11960 PF13610 DDE domain JX000_RS11980 PF01022 Bacterial regulatory protein, arsR family JX000_RS12005 PF00403 Heavy-metal-associated domain JX000_RS12010 PF00403 Heavy-metal-associated domain JX000_RS12015 PF02583 Metal-sensitive transcriptional repressor JX000_RS12025 PF01545 Cation efflux family JX000_RS12025 PF16916 Dimerisation domain of Zinc Transporter JX000_RS12030 PF12848 ABC transporter JX000_RS12030 PF00005 ABC transporter JX000_RS12040 PF01051 Initiator Replication protein JX000_RS12045 PF03904 Domain of unknown function (DUF334) JX000_RS12050 PF03432 Relaxase/Mobilisation nuclease domain JX000_RS12065 PF07827 KNTase C-terminal domain JX000_RS12070 PF03641 Possible lysine decarboxylase JX000_RS12075 PF01446 Replication protein