locus-tag class description SMAL454_RS00005 PF00308 Bacterial dnaA protein SMAL454_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SMAL454_RS00005 PF11638 DnaA N-terminal domain SMAL454_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SMAL454_RS00010 PF02767 DNA polymerase III beta subunit, central domain SMAL454_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SMAL454_RS00015 PF02463 RecF/RecN/SMC N terminal domain SMAL454_RS00020 PF01751 Toprim domain SMAL454_RS00020 PF18053 DNA gyrase B subunit insert domain SMAL454_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS00020 PF00204 DNA gyrase B SMAL454_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus SMAL454_RS00030 PF01435 Peptidase family M48 SMAL454_RS00040 PF03544 Gram-negative bacterial TonB protein C-terminal SMAL454_RS00045 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS00050 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS00055 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS00060 PF13396 Phospholipase_D-nuclease N-terminal SMAL454_RS00060 PF13091 PLD-like domain SMAL454_RS00070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SMAL454_RS00090 PF04055 Radical SAM superfamily SMAL454_RS00165 PF00589 Phage integrase family SMAL454_RS00165 PF13495 Phage integrase, N-terminal SAM-like domain SMAL454_RS00205 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SMAL454_RS00210 PF00155 Aminotransferase class I and II SMAL454_RS00215 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS00215 PF00593 TonB dependent receptor SMAL454_RS00230 PF02735 Ku70/Ku80 beta-barrel domain SMAL454_RS00235 PF01068 ATP dependent DNA ligase domain SMAL454_RS00235 PF04679 ATP dependent DNA ligase C terminal region SMAL454_RS00235 PF13298 DNA polymerase Ligase (LigD) SMAL454_RS00245 PF00107 Zinc-binding dehydrogenase SMAL454_RS00245 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS00250 PF01081 KDPG and KHG aldolase SMAL454_RS00260 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS00265 PF00351 Biopterin-dependent aromatic amino acid hydroxylase SMAL454_RS00270 PF01037 Lrp/AsnC ligand binding domain SMAL454_RS00280 PF01734 Patatin-like phospholipase SMAL454_RS00290 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS00290 PF00593 TonB dependent receptor SMAL454_RS00295 PF01569 PAP2 superfamily SMAL454_RS00310 PF00005 ABC transporter SMAL454_RS00325 PF06827 Zinc finger found in FPG and IleRS SMAL454_RS00325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SMAL454_RS00325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SMAL454_RS00330 PF04349 Periplasmic glucan biosynthesis protein, MdoG SMAL454_RS00335 PF00265 Thymidine kinase SMAL454_RS00350 PF13361 UvrD-like helicase C-terminal domain SMAL454_RS00350 PF00580 UvrD/REP helicase N-terminal domain SMAL454_RS00360 PF04337 Protein of unknown function, DUF480 SMAL454_RS00365 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SMAL454_RS00370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SMAL454_RS00380 PF01553 Acyltransferase SMAL454_RS00390 PF01171 PP-loop family SMAL454_RS00395 PF04381 Putative exonuclease, RdgC SMAL454_RS00405 PF02142 MGS-like domain SMAL454_RS00410 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS00410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS00410 PF00072 Response regulator receiver domain SMAL454_RS00410 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMAL454_RS00410 PF01627 Hpt domain SMAL454_RS00410 PF00989 PAS fold SMAL454_RS00415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMAL454_RS00415 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS00420 PF00310 Glutamine amidotransferases class-II SMAL454_RS00420 PF01645 Conserved region in glutamate synthase SMAL454_RS00420 PF01493 GXGXG motif SMAL454_RS00420 PF04898 Glutamate synthase central domain SMAL454_RS00460 PF00144 Beta-lactamase SMAL454_RS00485 PF00271 Helicase conserved C-terminal domain SMAL454_RS00485 PF09369 Domain of unknown function (DUF1998) SMAL454_RS00485 PF00270 DEAD/DEAH box helicase SMAL454_RS00515 PF01882 Protein of unknown function DUF58 SMAL454_RS00520 PF07726 ATPase family associated with various cellular activities (AAA) SMAL454_RS00520 PF17863 AAA lid domain SMAL454_RS00540 PF01523 Putative modulator of DNA gyrase SMAL454_RS00560 PF01434 Peptidase family M41 SMAL454_RS00560 PF17862 AAA+ lid domain SMAL454_RS00560 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS00580 PF13091 PLD-like domain SMAL454_RS00585 PF03061 Thioesterase superfamily SMAL454_RS00590 PF01553 Acyltransferase SMAL454_RS00605 PF01161 Phosphatidylethanolamine-binding protein SMAL454_RS00620 PF02673 Bacitracin resistance protein BacA SMAL454_RS00625 PF00120 Glutamine synthetase, catalytic domain SMAL454_RS00625 PF03951 Glutamine synthetase, beta-Grasp domain SMAL454_RS00630 PF00543 Nitrogen regulatory protein P-II SMAL454_RS00635 PF00909 Ammonium Transporter Family SMAL454_RS00695 PF03562 MltA specific insert domain SMAL454_RS00695 PF06725 3D domain SMAL454_RS00710 PF00989 PAS fold SMAL454_RS00710 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS00715 PF00158 Sigma-54 interaction domain SMAL454_RS00715 PF00072 Response regulator receiver domain SMAL454_RS00715 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS00720 PF00080 Copper/zinc superoxide dismutase (SODC) SMAL454_RS00725 PF00080 Copper/zinc superoxide dismutase (SODC) SMAL454_RS00735 PF00108 Thiolase, N-terminal domain SMAL454_RS00735 PF02803 Thiolase, C-terminal domain SMAL454_RS00770 PF02556 Preprotein translocase subunit SecB SMAL454_RS00775 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SMAL454_RS00775 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SMAL454_RS00795 PF01758 Sodium Bile acid symporter family SMAL454_RS00815 PF03358 NADPH-dependent FMN reductase SMAL454_RS00840 PF12833 Helix-turn-helix domain SMAL454_RS00850 PF04261 Dyp-type peroxidase family SMAL454_RS00890 PF00072 Response regulator receiver domain SMAL454_RS00890 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS00895 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS00895 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMAL454_RS00895 PF00072 Response regulator receiver domain SMAL454_RS00895 PF00989 PAS fold SMAL454_RS00895 PF01627 Hpt domain SMAL454_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS00910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS00910 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS00910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS00915 PF00588 SpoU rRNA Methylase family SMAL454_RS00925 PF05193 Peptidase M16 inactive domain SMAL454_RS00925 PF00675 Insulinase (Peptidase family M16) SMAL454_RS00935 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMAL454_RS00935 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMAL454_RS00940 PF00561 alpha/beta hydrolase fold SMAL454_RS00950 PF00501 AMP-binding enzyme SMAL454_RS00955 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family SMAL454_RS00965 PF01820 D-ala D-ala ligase N-terminus SMAL454_RS00965 PF07478 D-ala D-ala ligase C-terminus SMAL454_RS00975 PF03109 ABC1 family SMAL454_RS00985 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS00990 PF00535 Glycosyl transferase family 2 SMAL454_RS00995 PF02585 GlcNAc-PI de-N-acetylase SMAL454_RS01000 PF01596 O-methyltransferase SMAL454_RS01005 PF00849 RNA pseudouridylate synthase SMAL454_RS01005 PF04287 tRNA pseudouridine synthase C SMAL454_RS01015 PF00472 RF-1 domain SMAL454_RS01025 PF01432 Peptidase family M3 SMAL454_RS01030 PF01220 Dehydroquinase class II SMAL454_RS01040 PF10502 Signal peptidase, peptidase S26 SMAL454_RS01045 PF07690 Major Facilitator Superfamily SMAL454_RS01050 PF03466 LysR substrate binding domain SMAL454_RS01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS01055 PF03466 LysR substrate binding domain SMAL454_RS01060 PF01274 Malate synthase SMAL454_RS01065 PF00463 Isocitrate lyase family SMAL454_RS01070 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS01090 PF02785 Biotin carboxylase C-terminal domain SMAL454_RS01090 PF00289 Biotin carboxylase, N-terminal domain SMAL454_RS01090 PF00364 Biotin-requiring enzyme SMAL454_RS01090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMAL454_RS01095 PF01039 Carboxyl transferase domain SMAL454_RS01100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS01100 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS01100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS01130 PF03969 AFG1-like ATPase SMAL454_RS01135 PF03477 ATP cone domain SMAL454_RS01135 PF02867 Ribonucleotide reductase, barrel domain SMAL454_RS01135 PF00317 Ribonucleotide reductase, all-alpha domain SMAL454_RS01140 PF00268 Ribonucleotide reductase, small chain SMAL454_RS01150 PF01810 LysE type translocator SMAL454_RS01155 PF03061 Thioesterase superfamily SMAL454_RS01160 PF02146 Sir2 family SMAL454_RS01165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS01170 PF03466 LysR substrate binding domain SMAL454_RS01170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS01175 PF00551 Formyl transferase SMAL454_RS01180 PF00857 Isochorismatase family SMAL454_RS01185 PF02677 Epoxyqueuosine reductase QueH SMAL454_RS01195 PF00293 NUDIX domain SMAL454_RS01195 PF01467 Cytidylyltransferase-like SMAL454_RS01200 PF01734 Patatin-like phospholipase SMAL454_RS01215 PF01381 Helix-turn-helix SMAL454_RS01215 PF06114 IrrE N-terminal-like domain SMAL454_RS01215 PF09856 Predicted transcriptional regulator (DUF2083) SMAL454_RS01220 PF00171 Aldehyde dehydrogenase family SMAL454_RS01225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS01225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS01225 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS01230 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS01235 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS01240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMAL454_RS01240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMAL454_RS01245 PF02566 OsmC-like protein SMAL454_RS01275 PF00145 C-5 cytosine-specific DNA methylase SMAL454_RS01390 PF07484 Phage Tail Collar Domain SMAL454_RS01420 PF00182 Chitinase class I SMAL454_RS01475 PF01555 DNA methylase SMAL454_RS01480 PF09722 Protein of unknown function (DUF2384) SMAL454_RS01480 PF01936 NYN domain SMAL454_RS01490 PF00589 Phage integrase family SMAL454_RS01495 PF01207 Dihydrouridine synthase (Dus) SMAL454_RS01505 PF00072 Response regulator receiver domain SMAL454_RS01505 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS01515 PF06167 Glucose-regulated metallo-peptidase M90 SMAL454_RS01525 PF02237 Biotin protein ligase C terminal domain SMAL454_RS01525 PF03099 Biotin/lipoate A/B protein ligase family SMAL454_RS01525 PF08279 HTH domain SMAL454_RS01530 PF03309 Type III pantothenate kinase SMAL454_RS01545 PF01381 Helix-turn-helix SMAL454_RS01550 PF09722 Protein of unknown function (DUF2384) SMAL454_RS01550 PF01936 NYN domain SMAL454_RS01570 PF00491 Arginase family SMAL454_RS01580 PF05532 CsbD-like SMAL454_RS01590 PF00579 tRNA synthetases class I (W and Y) SMAL454_RS01600 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS01615 PF00083 Sugar (and other) transporter SMAL454_RS01625 PF00005 ABC transporter SMAL454_RS01625 PF13732 Domain of unknown function (DUF4162) SMAL454_RS01640 PF00892 EamA-like transporter family SMAL454_RS01645 PF00892 EamA-like transporter family SMAL454_RS01650 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS01650 PF00593 TonB dependent receptor SMAL454_RS01655 PF02687 FtsX-like permease family SMAL454_RS01655 PF12704 MacB-like periplasmic core domain SMAL454_RS01655 PF00005 ABC transporter SMAL454_RS01665 PF00005 ABC transporter SMAL454_RS01670 PF13533 Biotin-lipoyl like SMAL454_RS01675 PF00005 ABC transporter SMAL454_RS01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS01685 PF07730 Histidine kinase SMAL454_RS01700 PF00199 Catalase SMAL454_RS01705 PF00883 Cytosol aminopeptidase family, catalytic domain SMAL454_RS01705 PF02789 Cytosol aminopeptidase family, N-terminal domain SMAL454_RS01710 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS01715 PF01594 AI-2E family transporter SMAL454_RS01735 PF00595 PDZ domain SMAL454_RS01750 PF07237 Protein of unknown function (DUF1428) SMAL454_RS01755 PF00326 Prolyl oligopeptidase family SMAL454_RS01755 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMAL454_RS01765 PF00072 Response regulator receiver domain SMAL454_RS01765 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS01780 PF07690 Major Facilitator Superfamily SMAL454_RS01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS01785 PF03466 LysR substrate binding domain SMAL454_RS01790 PF07308 Protein of unknown function (DUF1456) SMAL454_RS01800 PF00106 short chain dehydrogenase SMAL454_RS01810 PF05746 DALR anticodon binding domain SMAL454_RS01810 PF00750 tRNA synthetases class I (R) SMAL454_RS01810 PF03485 Arginyl tRNA synthetase N terminal domain SMAL454_RS01820 PF00072 Response regulator receiver domain SMAL454_RS01820 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS01825 PF04127 DNA / pantothenate metabolism flavoprotein SMAL454_RS01825 PF02441 Flavoprotein SMAL454_RS01830 PF00692 dUTPase SMAL454_RS01835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMAL454_RS01835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMAL454_RS01835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMAL454_RS01835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMAL454_RS01840 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS01840 PF00072 Response regulator receiver domain SMAL454_RS01845 PF02702 Osmosensitive K+ channel His kinase sensor domain SMAL454_RS01845 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS01845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS01845 PF13492 GAF domain SMAL454_RS01845 PF13493 Domain of unknown function (DUF4118) SMAL454_RS01850 PF02669 K+-transporting ATPase, c chain SMAL454_RS01860 PF03814 Potassium-transporting ATPase A subunit SMAL454_RS01875 PF00156 Phosphoribosyl transferase domain SMAL454_RS01880 PF03372 Endonuclease/Exonuclease/phosphatase family SMAL454_RS01885 PF07690 Major Facilitator Superfamily SMAL454_RS01895 PF03702 Anhydro-N-acetylmuramic acid kinase SMAL454_RS01900 PF01551 Peptidase family M23 SMAL454_RS01900 PF04225 Opacity-associated protein A LysM-like domain SMAL454_RS01905 PF00579 tRNA synthetases class I (W and Y) SMAL454_RS01990 PF04389 Peptidase family M28 SMAL454_RS02000 PF01551 Peptidase family M23 SMAL454_RS02005 PF13180 PDZ domain SMAL454_RS02005 PF03572 Peptidase family S41 SMAL454_RS02015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SMAL454_RS02025 PF04973 Nicotinamide mononucleotide transporter SMAL454_RS02035 PF00171 Aldehyde dehydrogenase family SMAL454_RS02035 PF01619 Proline dehydrogenase SMAL454_RS02035 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SMAL454_RS02035 PF14850 DNA-binding domain of Proline dehydrogenase SMAL454_RS02045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMAL454_RS02045 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMAL454_RS02050 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMAL454_RS02060 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 SMAL454_RS02065 PF00510 Cytochrome c oxidase subunit III SMAL454_RS02090 PF01040 UbiA prenyltransferase family SMAL454_RS02100 PF13593 SBF-like CPA transporter family (DUF4137) SMAL454_RS02110 PF10410 DnaB-helicase binding domain of primase SMAL454_RS02110 PF08278 DNA primase DnaG DnaB-binding SMAL454_RS02110 PF08275 DNA primase catalytic core, N-terminal domain SMAL454_RS02110 PF01807 CHC2 zinc finger SMAL454_RS02115 PF03631 Virulence factor BrkB SMAL454_RS02125 PF01165 Ribosomal protein S21 SMAL454_RS02130 PF00814 Glycoprotease family SMAL454_RS02140 PF02152 Dihydroneopterin aldolase SMAL454_RS02145 PF00924 Mechanosensitive ion channel SMAL454_RS02150 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMAL454_RS02150 PF00933 Glycosyl hydrolase family 3 N terminal domain SMAL454_RS02150 PF14310 Fibronectin type III-like domain SMAL454_RS02160 PF07995 Glucose / Sorbosone dehydrogenase SMAL454_RS02165 PF05360 yiaA/B two helix domain SMAL454_RS02175 PF13520 Amino acid permease SMAL454_RS02185 PF01380 SIS domain SMAL454_RS02185 PF01418 Helix-turn-helix domain, rpiR family SMAL454_RS02190 PF13378 Enolase C-terminal domain-like SMAL454_RS02190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMAL454_RS02205 PF00593 TonB dependent receptor SMAL454_RS02210 PF00144 Beta-lactamase SMAL454_RS02215 PF01427 D-ala-D-ala dipeptidase SMAL454_RS02240 PF07063 Domain of unknown function (DUF1338) SMAL454_RS02245 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SMAL454_RS02245 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SMAL454_RS02250 PF03710 Glutamate-ammonia ligase adenylyltransferase SMAL454_RS02250 PF08335 GlnD PII-uridylyltransferase SMAL454_RS02255 PF02592 Putative vitamin uptake transporter SMAL454_RS02285 PF00881 Nitroreductase family SMAL454_RS02290 PF04264 YceI-like domain SMAL454_RS02305 PF08021 Siderophore-interacting FAD-binding domain SMAL454_RS02305 PF04954 Siderophore-interacting protein SMAL454_RS02310 PF03551 Transcriptional regulator PadR-like family SMAL454_RS02315 PF17831 Pyruvate dehydrogenase E1 component middle domain SMAL454_RS02315 PF00456 Transketolase, thiamine diphosphate binding domain SMAL454_RS02345 PF08676 MutL C terminal dimerisation domain SMAL454_RS02345 PF01119 DNA mismatch repair protein, C-terminal domain SMAL454_RS02350 PF04539 Sigma-70 region 3 SMAL454_RS02350 PF04545 Sigma-70, region 4 SMAL454_RS02350 PF03979 Sigma-70 factor, region 1.1 SMAL454_RS02350 PF04542 Sigma-70 region 2 SMAL454_RS02350 PF00140 Sigma-70 factor, region 1.2 SMAL454_RS02355 PF00145 C-5 cytosine-specific DNA methylase SMAL454_RS02420 PF00561 alpha/beta hydrolase fold SMAL454_RS02470 PF16916 Dimerisation domain of Zinc Transporter SMAL454_RS02470 PF01545 Cation efflux family SMAL454_RS02475 PF02583 Metal-sensitive transcriptional repressor SMAL454_RS02485 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMAL454_RS02485 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMAL454_RS02490 PF12848 ABC transporter SMAL454_RS02490 PF00005 ABC transporter SMAL454_RS02495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS02495 PF03466 LysR substrate binding domain SMAL454_RS02500 PF00144 Beta-lactamase SMAL454_RS02505 PF07690 Major Facilitator Superfamily SMAL454_RS02510 PF12792 CSS motif domain associated with EAL SMAL454_RS02510 PF00563 EAL domain SMAL454_RS02515 PF00324 Amino acid permease SMAL454_RS02520 PF01464 Transglycosylase SLT domain SMAL454_RS02535 PF03795 YCII-related domain SMAL454_RS02545 PF06983 3-demethylubiquinone-9 3-methyltransferase SMAL454_RS02555 PF07237 Protein of unknown function (DUF1428) SMAL454_RS02560 PF08281 Sigma-70, region 4 SMAL454_RS02560 PF04542 Sigma-70 region 2 SMAL454_RS02590 PF07694 5TMR of 5TMR-LYT SMAL454_RS02590 PF06580 Histidine kinase SMAL454_RS02595 PF04397 LytTr DNA-binding domain SMAL454_RS02595 PF00072 Response regulator receiver domain SMAL454_RS02615 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS02625 PF07690 Major Facilitator Superfamily SMAL454_RS02630 PF01431 Peptidase family M13 SMAL454_RS02630 PF05649 Peptidase family M13 SMAL454_RS02635 PF00563 EAL domain SMAL454_RS02635 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS02635 PF08448 PAS fold SMAL454_RS02635 PF08447 PAS fold SMAL454_RS02640 PF03466 LysR substrate binding domain SMAL454_RS02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS02650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SMAL454_RS02655 PF00999 Sodium/hydrogen exchanger family SMAL454_RS02680 PF00691 OmpA family SMAL454_RS02680 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMAL454_RS02685 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS02690 PF01641 SelR domain SMAL454_RS02705 PF01037 Lrp/AsnC ligand binding domain SMAL454_RS02710 PF01266 FAD dependent oxidoreductase SMAL454_RS02715 PF01168 Alanine racemase, N-terminal domain SMAL454_RS02715 PF00842 Alanine racemase, C-terminal domain SMAL454_RS02725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS02725 PF00989 PAS fold SMAL454_RS02725 PF18698 Histidine kinase sensor domain SMAL454_RS02725 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS02725 PF00672 HAMP domain SMAL454_RS02740 PF05175 Methyltransferase small domain SMAL454_RS02740 PF08468 Methyltransferase small domain N-terminal SMAL454_RS02745 PF01479 S4 domain SMAL454_RS02745 PF00849 RNA pseudouridylate synthase SMAL454_RS02750 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS02755 PF00109 Beta-ketoacyl synthase, N-terminal domain SMAL454_RS02755 PF02801 Beta-ketoacyl synthase, C-terminal domain SMAL454_RS02760 PF07977 FabA-like domain SMAL454_RS02765 PF00817 impB/mucB/samB family SMAL454_RS02765 PF11798 IMS family HHH motif SMAL454_RS02765 PF11799 impB/mucB/samB family C-terminal domain SMAL454_RS02780 PF03466 LysR substrate binding domain SMAL454_RS02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS02785 PF08241 Methyltransferase domain SMAL454_RS02790 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS02795 PF00593 TonB dependent receptor SMAL454_RS02795 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS02810 PF13185 GAF domain SMAL454_RS02820 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS02820 PF00155 Aminotransferase class I and II SMAL454_RS02825 PF01625 Peptide methionine sulfoxide reductase SMAL454_RS02830 PF02683 Cytochrome C biogenesis protein transmembrane region SMAL454_RS02830 PF00578 AhpC/TSA family SMAL454_RS02830 PF17991 Thioredoxin like C-terminal domain SMAL454_RS02835 PF01641 SelR domain SMAL454_RS02840 PF00072 Response regulator receiver domain SMAL454_RS02840 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS02845 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS02845 PF07689 KaiB domain SMAL454_RS02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS02850 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS02850 PF00672 HAMP domain SMAL454_RS02855 PF00072 Response regulator receiver domain SMAL454_RS02855 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS02860 PF00733 Asparagine synthase SMAL454_RS02860 PF13537 Glutamine amidotransferase domain SMAL454_RS02870 PF01242 6-pyruvoyl tetrahydropterin synthase SMAL454_RS02875 PF00593 TonB dependent receptor SMAL454_RS02875 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS02885 PF00271 Helicase conserved C-terminal domain SMAL454_RS02885 PF00270 DEAD/DEAH box helicase SMAL454_RS02895 PF14497 Glutathione S-transferase, C-terminal domain SMAL454_RS02895 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS02900 PF03167 Uracil DNA glycosylase superfamily SMAL454_RS02910 PF00437 Type II/IV secretion system protein SMAL454_RS02930 PF00571 CBS domain SMAL454_RS02930 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS02935 PF01053 Cys/Met metabolism PLP-dependent enzyme SMAL454_RS02945 PF00005 ABC transporter SMAL454_RS02950 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS02955 PF00535 Glycosyl transferase family 2 SMAL454_RS02960 PF14307 Glycosyltransferase WbsX SMAL454_RS02960 PF05045 Rhamnan synthesis protein F SMAL454_RS02995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS02995 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS03000 PF01370 NAD dependent epimerase/dehydratase family SMAL454_RS03005 PF01209 ubiE/COQ5 methyltransferase family SMAL454_RS03010 PF00106 short chain dehydrogenase SMAL454_RS03015 PF01565 FAD binding domain SMAL454_RS03015 PF04030 D-arabinono-1,4-lactone oxidase SMAL454_RS03020 PF01040 UbiA prenyltransferase family SMAL454_RS03035 PF00892 EamA-like transporter family SMAL454_RS03055 PF00535 Glycosyl transferase family 2 SMAL454_RS03070 PF01012 Electron transfer flavoprotein domain SMAL454_RS03070 PF00766 Electron transfer flavoprotein FAD-binding domain SMAL454_RS03075 PF01012 Electron transfer flavoprotein domain SMAL454_RS03080 PF16363 GDP-mannose 4,6 dehydratase SMAL454_RS03085 PF00483 Nucleotidyl transferase SMAL454_RS03090 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMAL454_RS03095 PF04321 RmlD substrate binding domain SMAL454_RS03105 PF01050 Mannose-6-phosphate isomerase SMAL454_RS03105 PF00483 Nucleotidyl transferase SMAL454_RS03110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMAL454_RS03110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMAL454_RS03110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMAL454_RS03110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMAL454_RS03115 PF12419 SNF2 Helicase protein SMAL454_RS03115 PF00271 Helicase conserved C-terminal domain SMAL454_RS03115 PF00176 SNF2 family N-terminal domain SMAL454_RS03120 PF01144 Coenzyme A transferase SMAL454_RS03125 PF01144 Coenzyme A transferase SMAL454_RS03130 PF14307 Glycosyltransferase WbsX SMAL454_RS03130 PF05045 Rhamnan synthesis protein F SMAL454_RS03150 PF00005 ABC transporter SMAL454_RS03155 PF02405 Permease MlaE SMAL454_RS03165 PF00816 H-NS histone family SMAL454_RS03170 PF03129 Anticodon binding domain SMAL454_RS03170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMAL454_RS03170 PF04073 Aminoacyl-tRNA editing domain SMAL454_RS03180 PF01066 CDP-alcohol phosphatidyltransferase SMAL454_RS03190 PF00583 Acetyltransferase (GNAT) family SMAL454_RS03200 PF00133 tRNA synthetases class I (I, L, M and V) SMAL454_RS03200 PF10458 Valyl tRNA synthetase tRNA binding arm SMAL454_RS03200 PF08264 Anticodon-binding domain of tRNA SMAL454_RS03210 PF02789 Cytosol aminopeptidase family, N-terminal domain SMAL454_RS03210 PF00883 Cytosol aminopeptidase family, catalytic domain SMAL454_RS03220 PF03739 Lipopolysaccharide export system permease LptF/LptG SMAL454_RS03235 PF02899 Phage integrase, N-terminal SAM-like domain SMAL454_RS03235 PF00589 Phage integrase family SMAL454_RS03240 PF10411 Disulfide bond isomerase protein N-terminus SMAL454_RS03240 PF13098 Thioredoxin-like domain SMAL454_RS03245 PF00553 Cellulose binding domain SMAL454_RS03245 PF00704 Glycosyl hydrolases family 18 SMAL454_RS03245 PF00041 Fibronectin type III domain SMAL454_RS03250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SMAL454_RS03250 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SMAL454_RS03250 PF02769 AIR synthase related protein, C-terminal domain SMAL454_RS03255 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS03255 PF03895 YadA-like membrane anchor domain SMAL454_RS03255 PF05658 Head domain of trimeric autotransporter adhesin SMAL454_RS03255 PF05662 Coiled stalk of trimeric autotransporter adhesin SMAL454_RS03260 PF00082 Subtilase family SMAL454_RS03260 PF04151 Bacterial pre-peptidase C-terminal domain SMAL454_RS03265 PF00437 Type II/IV secretion system protein SMAL454_RS03265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMAL454_RS03270 PF00482 Type II secretion system (T2SS), protein F SMAL454_RS03275 PF08334 Type II secretion system (T2SS), protein G SMAL454_RS03280 PF12019 Type II transport protein GspH SMAL454_RS03285 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS03295 PF03934 Type II secretion system (T2SS), protein K SMAL454_RS03300 PF05137 Fimbrial assembly protein (PilN) SMAL454_RS03305 PF10741 Type II secretion system (T2SS), protein M subtype b SMAL454_RS03315 PF00263 Bacterial type II and III secretion system protein SMAL454_RS03315 PF03958 Bacterial type II/III secretion system short domain SMAL454_RS03325 PF00535 Glycosyl transferase family 2 SMAL454_RS03330 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SMAL454_RS03330 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SMAL454_RS03340 PF16970 Type-1 fimbrial protein, A SMAL454_RS03345 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SMAL454_RS03345 PF02753 Pili assembly chaperone PapD, C-terminal domain SMAL454_RS03350 PF13953 PapC C-terminal domain SMAL454_RS03350 PF13954 PapC N-terminal domain SMAL454_RS03350 PF00577 Outer membrane usher protein SMAL454_RS03360 PF02350 UDP-N-acetylglucosamine 2-epimerase SMAL454_RS03370 PF13632 Glycosyl transferase family group 2 SMAL454_RS03370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMAL454_RS03385 PF00860 Permease family SMAL454_RS03390 PF12848 ABC transporter SMAL454_RS03390 PF00005 ABC transporter SMAL454_RS03400 PF00464 Serine hydroxymethyltransferase SMAL454_RS03420 PF03477 ATP cone domain SMAL454_RS03425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMAL454_RS03425 PF01872 RibD C-terminal domain SMAL454_RS03445 PF00677 Lumazine binding domain SMAL454_RS03450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMAL454_RS03450 PF00925 GTP cyclohydrolase II SMAL454_RS03455 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMAL454_RS03460 PF01029 NusB family SMAL454_RS03465 PF02769 AIR synthase related protein, C-terminal domain SMAL454_RS03465 PF00586 AIR synthase related protein, N-terminal domain SMAL454_RS03470 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SMAL454_RS03470 PF02753 Pili assembly chaperone PapD, C-terminal domain SMAL454_RS03485 PF13953 PapC C-terminal domain SMAL454_RS03485 PF13954 PapC N-terminal domain SMAL454_RS03485 PF00577 Outer membrane usher protein SMAL454_RS03495 PF01757 Acyltransferase family SMAL454_RS03500 PF02913 FAD linked oxidases, C-terminal domain SMAL454_RS03500 PF01565 FAD binding domain SMAL454_RS03505 PF04307 LexA-binding, inner membrane-associated putative hydrolase SMAL454_RS03510 PF02021 Uncharacterised protein family UPF0102 SMAL454_RS03520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMAL454_RS03540 PF02381 MraZ protein, putative antitoxin-like SMAL454_RS03545 PF01795 MraW methylase family SMAL454_RS03550 PF04999 Cell division protein FtsL SMAL454_RS03555 PF00905 Penicillin binding protein transpeptidase domain SMAL454_RS03555 PF03717 Penicillin-binding Protein dimerisation domain SMAL454_RS03560 PF01225 Mur ligase family, catalytic domain SMAL454_RS03560 PF02875 Mur ligase family, glutamate ligase domain SMAL454_RS03560 PF08245 Mur ligase middle domain SMAL454_RS03565 PF01225 Mur ligase family, catalytic domain SMAL454_RS03565 PF02875 Mur ligase family, glutamate ligase domain SMAL454_RS03565 PF08245 Mur ligase middle domain SMAL454_RS03570 PF00953 Glycosyl transferase family 4 SMAL454_RS03575 PF01098 Cell cycle protein SMAL454_RS03580 PF04101 Glycosyltransferase family 28 C-terminal domain SMAL454_RS03580 PF03033 Glycosyltransferase family 28 N-terminal domain SMAL454_RS03585 PF08245 Mur ligase middle domain SMAL454_RS03585 PF01225 Mur ligase family, catalytic domain SMAL454_RS03585 PF02875 Mur ligase family, glutamate ligase domain SMAL454_RS03590 PF07478 D-ala D-ala ligase C-terminus SMAL454_RS03590 PF01820 D-ala D-ala ligase N-terminus SMAL454_RS03595 PF08478 POTRA domain, FtsQ-type SMAL454_RS03595 PF03799 Cell division protein FtsQ SMAL454_RS03600 PF02491 SHS2 domain inserted in FTSA SMAL454_RS03605 PF00091 Tubulin/FtsZ family, GTPase domain SMAL454_RS03605 PF12327 FtsZ family, C-terminal domain SMAL454_RS03610 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SMAL454_RS03620 PF01476 LysM domain SMAL454_RS03620 PF08525 Opacity-associated protein A N-terminal motif SMAL454_RS03620 PF01551 Peptidase family M23 SMAL454_RS03625 PF02810 SEC-C motif SMAL454_RS03625 PF07517 SecA DEAD-like domain SMAL454_RS03625 PF01043 SecA preprotein cross-linking domain SMAL454_RS03625 PF07516 SecA Wing and Scaffold domain SMAL454_RS03630 PF00293 NUDIX domain SMAL454_RS03640 PF02219 Methylenetetrahydrofolate reductase SMAL454_RS03645 PF00561 alpha/beta hydrolase fold SMAL454_RS03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS03650 PF06580 Histidine kinase SMAL454_RS03650 PF07694 5TMR of 5TMR-LYT SMAL454_RS03650 PF13492 GAF domain SMAL454_RS03655 PF04397 LytTr DNA-binding domain SMAL454_RS03655 PF00072 Response regulator receiver domain SMAL454_RS03660 PF01979 Amidohydrolase family SMAL454_RS03675 PF04073 Aminoacyl-tRNA editing domain SMAL454_RS03680 PF05221 S-adenosyl-L-homocysteine hydrolase SMAL454_RS03680 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SMAL454_RS03690 PF00311 Phosphoenolpyruvate carboxylase SMAL454_RS03695 PF03061 Thioesterase superfamily SMAL454_RS03700 PF02773 S-adenosylmethionine synthetase, C-terminal domain SMAL454_RS03700 PF02772 S-adenosylmethionine synthetase, central domain SMAL454_RS03700 PF00438 S-adenosylmethionine synthetase, N-terminal domain SMAL454_RS03730 PF13847 Methyltransferase domain SMAL454_RS03735 PF01207 Dihydrouridine synthase (Dus) SMAL454_RS03745 PF03466 LysR substrate binding domain SMAL454_RS03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS03750 PF07690 Major Facilitator Superfamily SMAL454_RS03755 PF00294 pfkB family carbohydrate kinase SMAL454_RS03760 PF07670 Nucleoside recognition SMAL454_RS03760 PF07662 Na+ dependent nucleoside transporter C-terminus SMAL454_RS03760 PF01773 Na+ dependent nucleoside transporter N-terminus SMAL454_RS03765 PF00248 Aldo/keto reductase family SMAL454_RS03775 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS03775 PF00593 TonB dependent receptor SMAL454_RS03800 PF00005 ABC transporter SMAL454_RS03805 PF13472 GDSL-like Lipase/Acylhydrolase family SMAL454_RS03810 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS03810 PF00072 Response regulator receiver domain SMAL454_RS03815 PF08521 Two-component sensor kinase N-terminal SMAL454_RS03815 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS03825 PF01219 Prokaryotic diacylglycerol kinase SMAL454_RS03830 PF03741 Integral membrane protein TerC family SMAL454_RS03835 PF07690 Major Facilitator Superfamily SMAL454_RS03840 PF04011 LemA family SMAL454_RS03855 PF01790 Prolipoprotein diacylglyceryl transferase SMAL454_RS03860 PF00303 Thymidylate synthase SMAL454_RS03865 PF00186 Dihydrofolate reductase SMAL454_RS03870 PF06940 Domain of unknown function (DUF1287) SMAL454_RS03875 PF00149 Calcineurin-like phosphoesterase SMAL454_RS03880 PF04379 ApaG domain SMAL454_RS03885 PF00398 Ribosomal RNA adenine dimethylase SMAL454_RS03890 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMAL454_RS03895 PF00639 PPIC-type PPIASE domain SMAL454_RS03895 PF09312 SurA N-terminal domain SMAL454_RS03900 PF04453 LPS transport system D SMAL454_RS03900 PF03968 OstA-like protein SMAL454_RS03905 PF00850 Histone deacetylase domain SMAL454_RS03910 PF01923 Cobalamin adenosyltransferase SMAL454_RS03920 PF01494 FAD binding domain SMAL454_RS03925 PF01494 FAD binding domain SMAL454_RS03930 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMAL454_RS03930 PF13202 EF hand SMAL454_RS03935 PF18125 RlmM ferredoxin-like domain SMAL454_RS03935 PF01728 FtsJ-like methyltransferase SMAL454_RS03955 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMAL454_RS03955 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SMAL454_RS03965 PF01625 Peptide methionine sulfoxide reductase SMAL454_RS03970 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMAL454_RS03975 PF01272 Transcription elongation factor, GreA/GreB, C-term SMAL454_RS03975 PF14760 Rnk N-terminus SMAL454_RS03980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS03980 PF03466 LysR substrate binding domain SMAL454_RS03985 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS03985 PF13192 Thioredoxin domain SMAL454_RS03990 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMAL454_RS03990 PF00578 AhpC/TSA family SMAL454_RS03995 PF17827 PrmC N-terminal domain SMAL454_RS03995 PF05175 Methyltransferase small domain SMAL454_RS04000 PF00561 alpha/beta hydrolase fold SMAL454_RS04005 PF03466 LysR substrate binding domain SMAL454_RS04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS04010 PF07690 Major Facilitator Superfamily SMAL454_RS04020 PF00293 NUDIX domain SMAL454_RS04025 PF01367 5'-3' exonuclease, C-terminal SAM fold SMAL454_RS04025 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMAL454_RS04025 PF00476 DNA polymerase family A SMAL454_RS04025 PF01612 3'-5' exonuclease SMAL454_RS04040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SMAL454_RS04040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SMAL454_RS04040 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SMAL454_RS04060 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SMAL454_RS04065 PF02233 NAD(P) transhydrogenase beta subunit SMAL454_RS04075 PF01883 Iron-sulfur cluster assembly protein SMAL454_RS04080 PF01063 Amino-transferase class IV SMAL454_RS04085 PF00082 Subtilase family SMAL454_RS04085 PF04151 Bacterial pre-peptidase C-terminal domain SMAL454_RS04100 PF03358 NADPH-dependent FMN reductase SMAL454_RS04105 PF03631 Virulence factor BrkB SMAL454_RS04110 PF00578 AhpC/TSA family SMAL454_RS04115 PF03976 Polyphosphate kinase 2 (PPK2) SMAL454_RS04125 PF00472 RF-1 domain SMAL454_RS04125 PF03462 PCRF domain SMAL454_RS04130 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SMAL454_RS04130 PF01488 Shikimate / quinate 5-dehydrogenase SMAL454_RS04130 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SMAL454_RS04140 PF03550 Outer membrane lipoprotein LolB SMAL454_RS04145 PF08544 GHMP kinases C terminal SMAL454_RS04145 PF00288 GHMP kinases N terminal domain SMAL454_RS04155 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SMAL454_RS04155 PF14572 Phosphoribosyl synthetase-associated domain SMAL454_RS04160 PF01386 Ribosomal L25p family SMAL454_RS04160 PF14693 Ribosomal protein TL5, C-terminal domain SMAL454_RS04165 PF01195 Peptidyl-tRNA hydrolase SMAL454_RS04170 PF01926 50S ribosome-binding GTPase SMAL454_RS04170 PF06071 Protein of unknown function (DUF933) SMAL454_RS04175 PF12951 Passenger-associated-transport-repeat SMAL454_RS04175 PF03797 Autotransporter beta-domain SMAL454_RS04180 PF00072 Response regulator receiver domain SMAL454_RS04180 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS04185 PF00072 Response regulator receiver domain SMAL454_RS04185 PF09456 RcsC Alpha-Beta-Loop (ABL) SMAL454_RS04185 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS04190 PF01590 GAF domain SMAL454_RS04190 PF00563 EAL domain SMAL454_RS04190 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS04190 PF00989 PAS fold SMAL454_RS04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS04195 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS04195 PF09456 RcsC Alpha-Beta-Loop (ABL) SMAL454_RS04195 PF00072 Response regulator receiver domain SMAL454_RS04200 PF00593 TonB dependent receptor SMAL454_RS04200 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS04205 PF03575 Peptidase family S51 SMAL454_RS04210 PF01112 Asparaginase SMAL454_RS04230 PF03143 Elongation factor Tu C-terminal domain SMAL454_RS04230 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS04230 PF03144 Elongation factor Tu domain 2 SMAL454_RS04240 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SMAL454_RS04245 PF02357 Transcription termination factor nusG SMAL454_RS04245 PF00467 KOW motif SMAL454_RS04250 PF00298 Ribosomal protein L11, RNA binding domain SMAL454_RS04250 PF03946 Ribosomal protein L11, N-terminal domain SMAL454_RS04255 PF00687 Ribosomal protein L1p/L10e family SMAL454_RS04260 PF00466 Ribosomal protein L10 SMAL454_RS04265 PF16320 Ribosomal protein L7/L12 dimerisation domain SMAL454_RS04265 PF00542 Ribosomal protein L7/L12 C-terminal domain SMAL454_RS04270 PF04560 RNA polymerase Rpb2, domain 7 SMAL454_RS04270 PF10385 RNA polymerase beta subunit external 1 domain SMAL454_RS04270 PF00562 RNA polymerase Rpb2, domain 6 SMAL454_RS04270 PF04565 RNA polymerase Rpb2, domain 3 SMAL454_RS04270 PF04561 RNA polymerase Rpb2, domain 2 SMAL454_RS04270 PF04563 RNA polymerase beta subunit SMAL454_RS04275 PF00623 RNA polymerase Rpb1, domain 2 SMAL454_RS04275 PF05000 RNA polymerase Rpb1, domain 4 SMAL454_RS04275 PF04998 RNA polymerase Rpb1, domain 5 SMAL454_RS04275 PF04997 RNA polymerase Rpb1, domain 1 SMAL454_RS04275 PF04983 RNA polymerase Rpb1, domain 3 SMAL454_RS04280 PF00164 Ribosomal protein S12/S23 SMAL454_RS04285 PF00177 Ribosomal protein S7p/S5e SMAL454_RS04290 PF00679 Elongation factor G C-terminus SMAL454_RS04290 PF14492 Elongation Factor G, domain II SMAL454_RS04290 PF03764 Elongation factor G, domain IV SMAL454_RS04290 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS04290 PF03144 Elongation factor Tu domain 2 SMAL454_RS04295 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS04295 PF03144 Elongation factor Tu domain 2 SMAL454_RS04295 PF03143 Elongation factor Tu C-terminal domain SMAL454_RS04300 PF00338 Ribosomal protein S10p/S20e SMAL454_RS04305 PF00297 Ribosomal protein L3 SMAL454_RS04310 PF00573 Ribosomal protein L4/L1 family SMAL454_RS04315 PF00276 Ribosomal protein L23 SMAL454_RS04320 PF03947 Ribosomal Proteins L2, C-terminal domain SMAL454_RS04320 PF00181 Ribosomal Proteins L2, RNA binding domain SMAL454_RS04325 PF00203 Ribosomal protein S19 SMAL454_RS04330 PF00237 Ribosomal protein L22p/L17e SMAL454_RS04335 PF07650 KH domain SMAL454_RS04335 PF00189 Ribosomal protein S3, C-terminal domain SMAL454_RS04340 PF00252 Ribosomal protein L16p/L10e SMAL454_RS04345 PF00831 Ribosomal L29 protein SMAL454_RS04350 PF00366 Ribosomal protein S17 SMAL454_RS04355 PF00238 Ribosomal protein L14p/L23e SMAL454_RS04360 PF00467 KOW motif SMAL454_RS04360 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SMAL454_RS04365 PF00673 ribosomal L5P family C-terminus SMAL454_RS04365 PF00281 Ribosomal protein L5 SMAL454_RS04370 PF00253 Ribosomal protein S14p/S29e SMAL454_RS04375 PF00410 Ribosomal protein S8 SMAL454_RS04380 PF00347 Ribosomal protein L6 SMAL454_RS04385 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SMAL454_RS04390 PF00333 Ribosomal protein S5, N-terminal domain SMAL454_RS04390 PF03719 Ribosomal protein S5, C-terminal domain SMAL454_RS04395 PF00327 Ribosomal protein L30p/L7e SMAL454_RS04400 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SMAL454_RS04405 PF00344 SecY translocase SMAL454_RS04410 PF00416 Ribosomal protein S13/S18 SMAL454_RS04415 PF00411 Ribosomal protein S11 SMAL454_RS04420 PF01479 S4 domain SMAL454_RS04420 PF00163 Ribosomal protein S4/S9 N-terminal domain SMAL454_RS04425 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SMAL454_RS04425 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SMAL454_RS04425 PF01000 RNA polymerase Rpb3/RpoA insert domain SMAL454_RS04430 PF01196 Ribosomal protein L17 SMAL454_RS04435 PF02600 Disulfide bond formation protein DsbB SMAL454_RS04445 PF01474 Class-II DAHP synthetase family SMAL454_RS04455 PF01425 Amidase SMAL454_RS04465 PF03144 Elongation factor Tu domain 2 SMAL454_RS04465 PF00679 Elongation factor G C-terminus SMAL454_RS04465 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS04470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMAL454_RS04475 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMAL454_RS04475 PF00056 lactate/malate dehydrogenase, NAD binding domain SMAL454_RS04480 PF00849 RNA pseudouridylate synthase SMAL454_RS04490 PF16177 Acetyl-coenzyme A synthetase N-terminus SMAL454_RS04490 PF00501 AMP-binding enzyme SMAL454_RS04490 PF13193 AMP-binding enzyme C-terminal domain SMAL454_RS04505 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS04505 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS04515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS04515 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS04525 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS04525 PF00107 Zinc-binding dehydrogenase SMAL454_RS04530 PF00691 OmpA family SMAL454_RS04530 PF05736 OprF membrane domain SMAL454_RS04540 PF00849 RNA pseudouridylate synthase SMAL454_RS04540 PF01479 S4 domain SMAL454_RS04550 PF00155 Aminotransferase class I and II SMAL454_RS04560 PF00107 Zinc-binding dehydrogenase SMAL454_RS04560 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS04565 PF10459 Peptidase S46 SMAL454_RS04570 PF00300 Histidine phosphatase superfamily (branch 1) SMAL454_RS04575 PF02875 Mur ligase family, glutamate ligase domain SMAL454_RS04575 PF08245 Mur ligase middle domain SMAL454_RS04590 PF00156 Phosphoribosyl transferase domain SMAL454_RS04595 PF04305 Protein of unknown function (DUF455) SMAL454_RS04610 PF00149 Calcineurin-like phosphoesterase SMAL454_RS04615 PF01569 PAP2 superfamily SMAL454_RS04620 PF00534 Glycosyl transferases group 1 SMAL454_RS04620 PF13439 Glycosyltransferase Family 4 SMAL454_RS04625 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS04625 PF00593 TonB dependent receptor SMAL454_RS04635 PF02541 Ppx/GppA phosphatase family SMAL454_RS04640 PF02503 Polyphosphate kinase middle domain SMAL454_RS04640 PF13090 Polyphosphate kinase C-terminal domain 2 SMAL454_RS04640 PF17941 Polyphosphate kinase C-terminal domain 1 SMAL454_RS04640 PF13089 Polyphosphate kinase N-terminal domain SMAL454_RS04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS04645 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS04645 PF11808 Phosphate regulon sensor protein PhoR SMAL454_RS04645 PF00989 PAS fold SMAL454_RS04650 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS04650 PF00072 Response regulator receiver domain SMAL454_RS04655 PF01435 Peptidase family M48 SMAL454_RS04655 PF07720 Tetratricopeptide repeat SMAL454_RS04660 PF00462 Glutaredoxin SMAL454_RS04670 PF00180 Isocitrate/isopropylmalate dehydrogenase SMAL454_RS04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS04680 PF03466 LysR substrate binding domain SMAL454_RS04735 PF02899 Phage integrase, N-terminal SAM-like domain SMAL454_RS04735 PF00589 Phage integrase family SMAL454_RS04775 PF02768 DNA polymerase III beta subunit, C-terminal domain SMAL454_RS04775 PF00712 DNA polymerase III beta subunit, N-terminal domain SMAL454_RS04775 PF02767 DNA polymerase III beta subunit, central domain SMAL454_RS04800 PF00072 Response regulator receiver domain SMAL454_RS04800 PF00158 Sigma-54 interaction domain SMAL454_RS04800 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS04965 PF00476 DNA polymerase family A SMAL454_RS04965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMAL454_RS04965 PF01367 5'-3' exonuclease, C-terminal SAM fold SMAL454_RS04965 PF01612 3'-5' exonuclease SMAL454_RS05030 PF05698 Bacterial trigger factor protein (TF) C-terminus SMAL454_RS05030 PF05697 Bacterial trigger factor protein (TF) SMAL454_RS05035 PF00574 Clp protease SMAL454_RS05040 PF06689 ClpX C4-type zinc finger SMAL454_RS05040 PF10431 C-terminal, D2-small domain, of ClpB protein SMAL454_RS05040 PF07724 AAA domain (Cdc48 subfamily) SMAL454_RS05045 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS05045 PF05362 Lon protease (S16) C-terminal proteolytic domain SMAL454_RS05045 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMAL454_RS05050 PF00216 Bacterial DNA-binding protein SMAL454_RS05080 PF05698 Bacterial trigger factor protein (TF) C-terminus SMAL454_RS05085 PF05257 CHAP domain SMAL454_RS05085 PF01476 LysM domain SMAL454_RS05090 PF16123 Hydroxyacylglutathione hydrolase C-terminus SMAL454_RS05090 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS05100 PF00075 RNase H SMAL454_RS05105 PF00929 Exonuclease SMAL454_RS05130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SMAL454_RS05140 PF12706 Beta-lactamase superfamily domain SMAL454_RS05155 PF00893 Small Multidrug Resistance protein SMAL454_RS05170 PF12158 Protein of unknown function (DUF3592) SMAL454_RS05180 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SMAL454_RS05180 PF12170 DNA polymerase III tau subunit V interacting with alpha SMAL454_RS05180 PF12169 DNA polymerase III subunits gamma and tau domain III SMAL454_RS05185 PF02575 YbaB/EbfC DNA-binding family SMAL454_RS05190 PF02132 RecR protein SMAL454_RS05190 PF13662 Toprim domain SMAL454_RS05195 PF01230 HIT domain SMAL454_RS05205 PF13559 Domain of unknown function (DUF4129) SMAL454_RS05205 PF01841 Transglutaminase-like superfamily SMAL454_RS05205 PF11992 Domain of unknown function (DUF3488) SMAL454_RS05215 PF17863 AAA lid domain SMAL454_RS05215 PF07726 ATPase family associated with various cellular activities (AAA) SMAL454_RS05225 PF02545 Maf-like protein SMAL454_RS05230 PF02620 Large ribosomal RNA subunit accumulation protein YceD SMAL454_RS05235 PF01783 Ribosomal L32p protein family SMAL454_RS05240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMAL454_RS05240 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMAL454_RS05250 PF00698 Acyl transferase domain SMAL454_RS05260 PF00550 Phosphopantetheine attachment site SMAL454_RS05265 PF00109 Beta-ketoacyl synthase, N-terminal domain SMAL454_RS05265 PF02801 Beta-ketoacyl synthase, C-terminal domain SMAL454_RS05270 PF04715 Anthranilate synthase component I, N terminal region SMAL454_RS05270 PF00425 chorismate binding enzyme SMAL454_RS05275 PF02618 YceG-like family SMAL454_RS05280 PF02223 Thymidylate kinase SMAL454_RS05285 PF09115 DNA polymerase III, delta subunit, C terminal SMAL454_RS05385 PF04984 Phage tail sheath protein subtilisin-like domain SMAL454_RS05385 PF17482 Phage tail sheath C-terminal domain SMAL454_RS05490 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS05490 PF00593 TonB dependent receptor SMAL454_RS05500 PF07690 Major Facilitator Superfamily SMAL454_RS05505 PF00455 DeoR C terminal sensor domain SMAL454_RS05505 PF08220 DeoR-like helix-turn-helix domain SMAL454_RS05510 PF13599 Pentapeptide repeats (9 copies) SMAL454_RS05515 PF13649 Methyltransferase domain SMAL454_RS05525 PF03466 LysR substrate binding domain SMAL454_RS05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS05530 PF00155 Aminotransferase class I and II SMAL454_RS05530 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS05535 PF00892 EamA-like transporter family SMAL454_RS05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS05545 PF03466 LysR substrate binding domain SMAL454_RS05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS05550 PF03466 LysR substrate binding domain SMAL454_RS05555 PF07690 Major Facilitator Superfamily SMAL454_RS05575 PF07690 Major Facilitator Superfamily SMAL454_RS05580 PF09278 MerR, DNA binding SMAL454_RS05580 PF00376 MerR family regulatory protein SMAL454_RS05590 PF03466 LysR substrate binding domain SMAL454_RS05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS05595 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMAL454_RS05595 PF03807 NADP oxidoreductase coenzyme F420-dependent SMAL454_RS05600 PF01168 Alanine racemase, N-terminal domain SMAL454_RS05605 PF00437 Type II/IV secretion system protein SMAL454_RS05610 PF00437 Type II/IV secretion system protein SMAL454_RS05615 PF00248 Aldo/keto reductase family SMAL454_RS05620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS05620 PF03466 LysR substrate binding domain SMAL454_RS05635 PF13673 Acetyltransferase (GNAT) domain SMAL454_RS05635 PF13302 Acetyltransferase (GNAT) domain SMAL454_RS05635 PF03352 Methyladenine glycosylase SMAL454_RS05635 PF00117 Glutamine amidotransferase class-I SMAL454_RS05635 PF00958 GMP synthase C terminal domain SMAL454_RS05640 PF13687 Domain of unknown function (DUF4153) SMAL454_RS05645 PF02622 Uncharacterized ACR, COG1678 SMAL454_RS05650 PF03652 Holliday junction resolvase SMAL454_RS05655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMAL454_RS05655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMAL454_RS05675 PF00571 CBS domain SMAL454_RS05675 PF01769 Divalent cation transporter SMAL454_RS05675 PF03448 MgtE intracellular N domain SMAL454_RS05680 PF02896 PEP-utilising enzyme, TIM barrel domain SMAL454_RS05680 PF00391 PEP-utilising enzyme, mobile domain SMAL454_RS05680 PF05524 PEP-utilising enzyme, N-terminal SMAL454_RS05685 PF00381 PTS HPr component phosphorylation site SMAL454_RS05695 PF03668 P-loop ATPase protein family SMAL454_RS05700 PF07475 HPr Serine kinase C-terminal domain SMAL454_RS05700 PF02603 HPr Serine kinase N terminus SMAL454_RS05705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SMAL454_RS05710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SMAL454_RS05715 PF04963 Sigma-54 factor, core binding domain SMAL454_RS05715 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMAL454_RS05715 PF04552 Sigma-54, DNA binding domain SMAL454_RS05720 PF00005 ABC transporter SMAL454_RS05720 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMAL454_RS05740 PF00571 CBS domain SMAL454_RS05740 PF01380 SIS domain SMAL454_RS05750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMAL454_RS05770 PF00551 Formyl transferase SMAL454_RS05790 PF00586 AIR synthase related protein, N-terminal domain SMAL454_RS05790 PF02769 AIR synthase related protein, C-terminal domain SMAL454_RS05800 PF01594 AI-2E family transporter SMAL454_RS05805 PF00308 Bacterial dnaA protein SMAL454_RS05810 PF00483 Nucleotidyl transferase SMAL454_RS05815 PF01636 Phosphotransferase enzyme family SMAL454_RS05820 PF04226 Transglycosylase associated protein SMAL454_RS05850 PF00258 Flavodoxin SMAL454_RS05850 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS05850 PF00667 FAD binding domain SMAL454_RS05855 PF02424 ApbE family SMAL454_RS05875 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS05875 PF00593 TonB dependent receptor SMAL454_RS05885 PF13640 2OG-Fe(II) oxygenase superfamily SMAL454_RS05885 PF18331 PKHD-type hydroxylase C-terminal domain SMAL454_RS05895 PF00593 TonB dependent receptor SMAL454_RS05895 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS05905 PF00355 Rieske [2Fe-2S] domain SMAL454_RS05920 PF00266 Aminotransferase class-V SMAL454_RS05925 PF01458 Uncharacterized protein family (UPF0051) SMAL454_RS05930 PF00005 ABC transporter SMAL454_RS05940 PF01458 Uncharacterized protein family (UPF0051) SMAL454_RS05945 PF02082 Transcriptional regulator SMAL454_RS05955 PF01965 DJ-1/PfpI family SMAL454_RS05980 PF02566 OsmC-like protein SMAL454_RS05985 PF02567 Phenazine biosynthesis-like protein SMAL454_RS05990 PF02567 Phenazine biosynthesis-like protein SMAL454_RS05995 PF00696 Amino acid kinase family SMAL454_RS05995 PF01842 ACT domain SMAL454_RS06005 PF08245 Mur ligase middle domain SMAL454_RS06020 PF00348 Polyprenyl synthetase SMAL454_RS06025 PF00128 Alpha amylase, catalytic domain SMAL454_RS06035 PF10566 Glycoside hydrolase 97 SMAL454_RS06035 PF14508 Glycosyl-hydrolase 97 N-terminal SMAL454_RS06035 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation SMAL454_RS06045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SMAL454_RS06050 PF00128 Alpha amylase, catalytic domain SMAL454_RS06050 PF00686 Starch binding domain SMAL454_RS06075 PF00005 ABC transporter SMAL454_RS06075 PF13732 Domain of unknown function (DUF4162) SMAL454_RS06080 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS06085 PF00436 Single-strand binding protein family SMAL454_RS06095 PF05199 GMC oxidoreductase SMAL454_RS06095 PF00732 GMC oxidoreductase SMAL454_RS06120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMAL454_RS06120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMAL454_RS06125 PF03825 Nucleoside H+ symporter SMAL454_RS06135 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS06140 PF00563 EAL domain SMAL454_RS06140 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS06140 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS06150 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS06175 PF01022 Bacterial regulatory protein, arsR family SMAL454_RS06190 PF13443 Cro/C1-type HTH DNA-binding domain SMAL454_RS06195 PF03741 Integral membrane protein TerC family SMAL454_RS06195 PF03471 Transporter associated domain SMAL454_RS06195 PF00571 CBS domain SMAL454_RS06200 PF00149 Calcineurin-like phosphoesterase SMAL454_RS06205 PF01794 Ferric reductase like transmembrane component SMAL454_RS06215 PF05114 Protein of unknown function (DUF692) SMAL454_RS06225 PF07681 DoxX SMAL454_RS06235 PF00578 AhpC/TSA family SMAL454_RS06235 PF02683 Cytochrome C biogenesis protein transmembrane region SMAL454_RS06235 PF17991 Thioredoxin like C-terminal domain SMAL454_RS06240 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS06240 PF00072 Response regulator receiver domain SMAL454_RS06245 PF00672 HAMP domain SMAL454_RS06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS06245 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS06255 PF00083 Sugar (and other) transporter SMAL454_RS06255 PF08946 Osmosensory transporter coiled coil SMAL454_RS06260 PF01156 Inosine-uridine preferring nucleoside hydrolase SMAL454_RS06270 PF07729 FCD domain SMAL454_RS06270 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS06280 PF00698 Acyl transferase domain SMAL454_RS06285 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SMAL454_RS06290 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG SMAL454_RS06300 PF01039 Carboxyl transferase domain SMAL454_RS06305 PF06857 Malonate decarboxylase delta subunit (MdcD) SMAL454_RS06310 PF16957 Malonate decarboxylase, alpha subunit, transporter SMAL454_RS06315 PF00593 TonB dependent receptor SMAL454_RS06315 PF07660 Secretin and TonB N terminus short domain SMAL454_RS06315 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS06320 PF06039 Malate:quinone oxidoreductase (Mqo) SMAL454_RS06325 PF13673 Acetyltransferase (GNAT) domain SMAL454_RS06330 PF03466 LysR substrate binding domain SMAL454_RS06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS06335 PF01810 LysE type translocator SMAL454_RS06345 PF00854 POT family SMAL454_RS06360 PF03169 OPT oligopeptide transporter protein SMAL454_RS06365 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMAL454_RS06365 PF07676 WD40-like Beta Propeller Repeat SMAL454_RS06365 PF00326 Prolyl oligopeptidase family SMAL454_RS06380 PF03776 Septum formation topological specificity factor MinE SMAL454_RS06385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMAL454_RS06390 PF05209 Septum formation inhibitor MinC, N-terminal domain SMAL454_RS06390 PF03775 Septum formation inhibitor MinC, C-terminal domain SMAL454_RS06400 PF07730 Histidine kinase SMAL454_RS06405 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS06405 PF00072 Response regulator receiver domain SMAL454_RS06445 PF02222 ATP-grasp domain SMAL454_RS06445 PF01370 NAD dependent epimerase/dehydratase family SMAL454_RS06455 PF04377 Arginine-tRNA-protein transferase, C terminus SMAL454_RS06455 PF04376 Arginine-tRNA-protein transferase, N terminus SMAL454_RS06465 PF04542 Sigma-70 region 2 SMAL454_RS06465 PF08281 Sigma-70, region 4 SMAL454_RS06480 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS06500 PF00005 ABC transporter SMAL454_RS06500 PF17755 UvrA DNA-binding domain SMAL454_RS06500 PF17760 UvrA interaction domain SMAL454_RS06505 PF00829 Ribosomal prokaryotic L21 protein SMAL454_RS06510 PF01016 Ribosomal L27 protein SMAL454_RS06515 PF01018 GTP1/OBG SMAL454_RS06515 PF01926 50S ribosome-binding GTPase SMAL454_RS06520 PF01649 Ribosomal protein S20 SMAL454_RS06525 PF03023 Lipid II flippase MurJ SMAL454_RS06530 PF01687 Riboflavin kinase SMAL454_RS06530 PF06574 FAD synthetase SMAL454_RS06535 PF06827 Zinc finger found in FPG and IleRS SMAL454_RS06535 PF00133 tRNA synthetases class I (I, L, M and V) SMAL454_RS06535 PF08264 Anticodon-binding domain of tRNA SMAL454_RS06540 PF01252 Signal peptidase (SPase) II SMAL454_RS06545 PF02401 LytB protein SMAL454_RS06555 PF07947 YhhN family SMAL454_RS06570 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS06570 PF00593 TonB dependent receptor SMAL454_RS06590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMAL454_RS06590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMAL454_RS06600 PF05593 RHS Repeat SMAL454_RS06600 PF03527 RHS protein SMAL454_RS06630 PF06481 COX Aromatic Rich Motif SMAL454_RS06630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMAL454_RS06635 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMAL454_RS06640 PF00510 Cytochrome c oxidase subunit III SMAL454_RS06645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SMAL454_RS06650 PF00563 EAL domain SMAL454_RS06650 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS06650 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS06660 PF00183 Hsp90 protein SMAL454_RS06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS06680 PF02881 SRP54-type protein, helical bundle domain SMAL454_RS06680 PF02978 Signal peptide binding domain SMAL454_RS06680 PF00448 SRP54-type protein, GTPase domain SMAL454_RS06685 PF03060 Nitronate monooxygenase SMAL454_RS06700 PF00886 Ribosomal protein S16 SMAL454_RS06705 PF05239 PRC-barrel domain SMAL454_RS06705 PF01782 RimM N-terminal domain SMAL454_RS06710 PF01746 tRNA (Guanine-1)-methyltransferase SMAL454_RS06715 PF01245 Ribosomal protein L19 SMAL454_RS06735 PF01554 MatE SMAL454_RS06745 PF01479 S4 domain SMAL454_RS06760 PF06628 Catalase-related immune-responsive SMAL454_RS06760 PF00199 Catalase SMAL454_RS06775 PF01624 MutS domain I SMAL454_RS06775 PF05192 MutS domain III SMAL454_RS06775 PF05190 MutS family domain IV SMAL454_RS06775 PF05188 MutS domain II SMAL454_RS06775 PF00488 MutS domain V SMAL454_RS06785 PF08479 POTRA domain, ShlB-type SMAL454_RS06785 PF17287 POTRA domain SMAL454_RS06785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SMAL454_RS06790 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS06790 PF13332 Hemagglutinin repeat SMAL454_RS06790 PF05860 haemagglutination activity domain SMAL454_RS06790 PF04829 Pre-toxin domain with VENN motif SMAL454_RS06805 PF00672 HAMP domain SMAL454_RS06805 PF02203 Tar ligand binding domain homologue SMAL454_RS06805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS06825 PF13533 Biotin-lipoyl like SMAL454_RS06835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS06835 PF03466 LysR substrate binding domain SMAL454_RS06840 PF01810 LysE type translocator SMAL454_RS06845 PF00557 Metallopeptidase family M24 SMAL454_RS06870 PF00202 Aminotransferase class-III SMAL454_RS06880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMAL454_RS06885 PF00892 EamA-like transporter family SMAL454_RS06890 PF00892 EamA-like transporter family SMAL454_RS06895 PF12146 Serine aminopeptidase, S33 SMAL454_RS06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS06900 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS06905 PF00072 Response regulator receiver domain SMAL454_RS06905 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS06915 PF01638 HxlR-like helix-turn-helix SMAL454_RS06920 PF07690 Major Facilitator Superfamily SMAL454_RS06925 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS06930 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS06930 PF00593 TonB dependent receptor SMAL454_RS06940 PF01545 Cation efflux family SMAL454_RS06945 PF04493 Endonuclease V SMAL454_RS06950 PF00300 Histidine phosphatase superfamily (branch 1) SMAL454_RS06960 PF05649 Peptidase family M13 SMAL454_RS06960 PF01431 Peptidase family M13 SMAL454_RS06965 PF01966 HD domain SMAL454_RS06965 PF00072 Response regulator receiver domain SMAL454_RS06970 PF00271 Helicase conserved C-terminal domain SMAL454_RS06970 PF03461 TRCF domain SMAL454_RS06970 PF17757 UvrB interaction domain SMAL454_RS06970 PF00270 DEAD/DEAH box helicase SMAL454_RS06970 PF02559 CarD-like/TRCF domain SMAL454_RS06980 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SMAL454_RS06985 PF00072 Response regulator receiver domain SMAL454_RS06985 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS06990 PF00672 HAMP domain SMAL454_RS06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS06990 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS06995 PF06123 Inner membrane protein CreD SMAL454_RS07005 PF02225 PA domain SMAL454_RS07005 PF04389 Peptidase family M28 SMAL454_RS07010 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMAL454_RS07015 PF01475 Ferric uptake regulator family SMAL454_RS07020 PF13533 Biotin-lipoyl like SMAL454_RS07035 PF00593 TonB dependent receptor SMAL454_RS07035 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS07055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMAL454_RS07055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMAL454_RS07060 PF00730 HhH-GPD superfamily base excision DNA repair protein SMAL454_RS07060 PF12833 Helix-turn-helix domain SMAL454_RS07060 PF02805 Metal binding domain of Ada SMAL454_RS07060 PF06029 AlkA N-terminal domain SMAL454_RS07085 PF01494 FAD binding domain SMAL454_RS07095 PF03880 DbpA RNA binding domain SMAL454_RS07095 PF00270 DEAD/DEAH box helicase SMAL454_RS07095 PF00271 Helicase conserved C-terminal domain SMAL454_RS07100 PF00563 EAL domain SMAL454_RS07100 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07100 PF08448 PAS fold SMAL454_RS07105 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07105 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS07105 PF00563 EAL domain SMAL454_RS07110 PF01479 S4 domain SMAL454_RS07110 PF00849 RNA pseudouridylate synthase SMAL454_RS07115 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07135 PF00144 Beta-lactamase SMAL454_RS07140 PF00005 ABC transporter SMAL454_RS07140 PF00664 ABC transporter transmembrane region SMAL454_RS07145 PF00328 Histidine phosphatase superfamily (branch 2) SMAL454_RS07175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS07175 PF03466 LysR substrate binding domain SMAL454_RS07185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMAL454_RS07190 PF03551 Transcriptional regulator PadR-like family SMAL454_RS07210 PF03653 Uncharacterised protein family (UPF0093) SMAL454_RS07215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SMAL454_RS07225 PF01336 OB-fold nucleic acid binding domain SMAL454_RS07225 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMAL454_RS07225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMAL454_RS07225 PF14579 Helix-hairpin-helix motif SMAL454_RS07225 PF02811 PHP domain SMAL454_RS07230 PF01351 Ribonuclease HII SMAL454_RS07235 PF02684 Lipid-A-disaccharide synthetase SMAL454_RS07240 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS07240 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SMAL454_RS07245 PF07977 FabA-like domain SMAL454_RS07250 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SMAL454_RS07250 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS07255 PF01103 Surface antigen SMAL454_RS07255 PF07244 Surface antigen variable number repeat SMAL454_RS07260 PF02163 Peptidase family M50 SMAL454_RS07260 PF17820 PDZ domain SMAL454_RS07265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SMAL454_RS07265 PF13288 DXP reductoisomerase C-terminal domain SMAL454_RS07265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SMAL454_RS07275 PF01255 Putative undecaprenyl diphosphate synthase SMAL454_RS07280 PF01765 Ribosome recycling factor SMAL454_RS07285 PF00696 Amino acid kinase family SMAL454_RS07290 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07295 PF00889 Elongation factor TS SMAL454_RS07300 PF00318 Ribosomal protein S2 SMAL454_RS07320 PF13953 PapC C-terminal domain SMAL454_RS07320 PF00577 Outer membrane usher protein SMAL454_RS07320 PF13954 PapC N-terminal domain SMAL454_RS07335 PF00557 Metallopeptidase family M24 SMAL454_RS07340 PF08335 GlnD PII-uridylyltransferase SMAL454_RS07340 PF01966 HD domain SMAL454_RS07340 PF01909 Nucleotidyltransferase domain SMAL454_RS07345 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SMAL454_RS07345 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS07345 PF14602 Hexapeptide repeat of succinyl-transferase SMAL454_RS07350 PF03960 ArsC family SMAL454_RS07355 PF07687 Peptidase dimerisation domain SMAL454_RS07355 PF01546 Peptidase family M20/M25/M40 SMAL454_RS07360 PF00733 Asparagine synthase SMAL454_RS07360 PF13537 Glutamine amidotransferase domain SMAL454_RS07365 PF00999 Sodium/hydrogen exchanger family SMAL454_RS07370 PF01804 Penicillin amidase SMAL454_RS07375 PF00210 Ferritin-like domain SMAL454_RS07380 PF00521 DNA gyrase/topoisomerase IV, subunit A SMAL454_RS07380 PF03989 DNA gyrase C-terminal domain, beta-propeller SMAL454_RS07385 PF12833 Helix-turn-helix domain SMAL454_RS07395 PF02321 Outer membrane efflux protein SMAL454_RS07400 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS07400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS07405 PF07690 Major Facilitator Superfamily SMAL454_RS07420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS07420 PF03466 LysR substrate binding domain SMAL454_RS07440 PF00575 S1 RNA binding domain SMAL454_RS07440 PF00773 RNB domain SMAL454_RS07440 PF17876 Cold shock domain SMAL454_RS07440 PF08461 Ribonuclease R winged-helix domain SMAL454_RS07440 PF08206 Ribonuclease B OB domain SMAL454_RS07450 PF00588 SpoU rRNA Methylase family SMAL454_RS07450 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMAL454_RS07455 PF02321 Outer membrane efflux protein SMAL454_RS07460 PF00005 ABC transporter SMAL454_RS07460 PF02687 FtsX-like permease family SMAL454_RS07460 PF12704 MacB-like periplasmic core domain SMAL454_RS07465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS07470 PF00072 Response regulator receiver domain SMAL454_RS07470 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS07475 PF00672 HAMP domain SMAL454_RS07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS07475 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS07480 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07485 PF00929 Exonuclease SMAL454_RS07490 PF07681 DoxX SMAL454_RS07500 PF05114 Protein of unknown function (DUF692) SMAL454_RS07510 PF01895 PhoU domain SMAL454_RS07515 PF00005 ABC transporter SMAL454_RS07520 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS07525 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS07530 PF12849 PBP superfamily domain SMAL454_RS07535 PF12849 PBP superfamily domain SMAL454_RS07545 PF10576 Iron-sulfur binding domain of endonuclease III SMAL454_RS07545 PF00730 HhH-GPD superfamily base excision DNA repair protein SMAL454_RS07545 PF00633 Helix-hairpin-helix motif SMAL454_RS07555 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS07560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMAL454_RS07560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMAL454_RS07565 PF00293 NUDIX domain SMAL454_RS07570 PF00581 Rhodanese-like domain SMAL454_RS07585 PF10672 S-adenosylmethionine-dependent methyltransferase SMAL454_RS07585 PF02926 THUMP domain SMAL454_RS07585 PF01170 Putative RNA methylase family UPF0020 SMAL454_RS07605 PF04286 Protein of unknown function (DUF445) SMAL454_RS07615 PF00202 Aminotransferase class-III SMAL454_RS07620 PF00171 Aldehyde dehydrogenase family SMAL454_RS07630 PF07690 Major Facilitator Superfamily SMAL454_RS07630 PF00083 Sugar (and other) transporter SMAL454_RS07635 PF01814 Hemerythrin HHE cation binding domain SMAL454_RS07640 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS07640 PF00072 Response regulator receiver domain SMAL454_RS07655 PF01266 FAD dependent oxidoreductase SMAL454_RS07660 PF07722 Peptidase C26 SMAL454_RS07665 PF00120 Glutamine synthetase, catalytic domain SMAL454_RS07670 PF13416 Bacterial extracellular solute-binding protein SMAL454_RS07680 PF00005 ABC transporter SMAL454_RS07680 PF08402 TOBE domain SMAL454_RS07685 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS07690 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS07695 PF00171 Aldehyde dehydrogenase family SMAL454_RS07710 PF00571 CBS domain SMAL454_RS07710 PF03471 Transporter associated domain SMAL454_RS07730 PF02130 Uncharacterized protein family UPF0054 SMAL454_RS07735 PF02562 PhoH-like protein SMAL454_RS07745 PF00005 ABC transporter SMAL454_RS07755 PF04055 Radical SAM superfamily SMAL454_RS07755 PF01938 TRAM domain SMAL454_RS07755 PF00919 Uncharacterized protein family UPF0004 SMAL454_RS07760 PF13417 Glutathione S-transferase, N-terminal domain SMAL454_RS07770 PF01464 Transglycosylase SLT domain SMAL454_RS07775 PF00355 Rieske [2Fe-2S] domain SMAL454_RS07775 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMAL454_RS07780 PF00032 Cytochrome b(C-terminal)/b6/petD SMAL454_RS07780 PF00033 Cytochrome b/b6/petB SMAL454_RS07785 PF02167 Cytochrome C1 family SMAL454_RS07790 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS07790 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS07795 PF04386 Stringent starvation protein B SMAL454_RS07810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMAL454_RS07810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMAL454_RS07820 PF00731 AIR carboxylase SMAL454_RS07825 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SMAL454_RS07825 PF02222 ATP-grasp domain SMAL454_RS07830 PF02627 Carboxymuconolactone decarboxylase family SMAL454_RS07835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMAL454_RS07835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMAL454_RS07840 PF00462 Glutaredoxin SMAL454_RS07850 PF00593 TonB dependent receptor SMAL454_RS07880 PF05567 Neisseria PilC beta-propeller domain SMAL454_RS07885 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor SMAL454_RS07885 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS07900 PF00271 Helicase conserved C-terminal domain SMAL454_RS07900 PF04851 Type III restriction enzyme, res subunit SMAL454_RS07900 PF02151 UvrB/uvrC motif SMAL454_RS07900 PF12344 Ultra-violet resistance protein B SMAL454_RS07900 PF17757 UvrB interaction domain SMAL454_RS07940 PF06629 MltA-interacting protein MipA SMAL454_RS07945 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS07945 PF00072 Response regulator receiver domain SMAL454_RS07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS07950 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS07960 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS07970 PF00664 ABC transporter transmembrane region SMAL454_RS07970 PF00005 ABC transporter SMAL454_RS07975 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SMAL454_RS07980 PF02348 Cytidylyltransferase SMAL454_RS07985 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMAL454_RS07995 PF01541 GIY-YIG catalytic domain SMAL454_RS07995 PF02151 UvrB/uvrC motif SMAL454_RS07995 PF08459 UvrC Helix-hairpin-helix N-terminal SMAL454_RS08000 PF01066 CDP-alcohol phosphatidyltransferase SMAL454_RS08020 PF02321 Outer membrane efflux protein SMAL454_RS08030 PF00005 ABC transporter SMAL454_RS08030 PF12704 MacB-like periplasmic core domain SMAL454_RS08030 PF02687 FtsX-like permease family SMAL454_RS08070 PF13344 Haloacid dehalogenase-like hydrolase SMAL454_RS08070 PF00293 NUDIX domain SMAL454_RS08090 PF01613 Flavin reductase like domain SMAL454_RS08115 PF03466 LysR substrate binding domain SMAL454_RS08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS08120 PF00248 Aldo/keto reductase family SMAL454_RS08135 PF02311 AraC-like ligand binding domain SMAL454_RS08135 PF12833 Helix-turn-helix domain SMAL454_RS08140 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMAL454_RS08160 PF13746 4Fe-4S dicluster domain SMAL454_RS08160 PF12801 4Fe-4S binding domain SMAL454_RS08160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SMAL454_RS08175 PF04055 Radical SAM superfamily SMAL454_RS08175 PF06969 HemN C-terminal domain SMAL454_RS08190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMAL454_RS08190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMAL454_RS08190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMAL454_RS08195 PF01645 Conserved region in glutamate synthase SMAL454_RS08200 PF13673 Acetyltransferase (GNAT) domain SMAL454_RS08210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMAL454_RS08220 PF00581 Rhodanese-like domain SMAL454_RS08220 PF17773 UPF0176 acylphosphatase like domain SMAL454_RS08225 PF00296 Luciferase-like monooxygenase SMAL454_RS08240 PF00571 CBS domain SMAL454_RS08240 PF03471 Transporter associated domain SMAL454_RS08240 PF01595 Cyclin M transmembrane N-terminal domain SMAL454_RS08250 PF01384 Phosphate transporter family SMAL454_RS08260 PF13302 Acetyltransferase (GNAT) domain SMAL454_RS08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS08265 PF01751 Toprim domain SMAL454_RS08265 PF00204 DNA gyrase B SMAL454_RS08265 PF00986 DNA gyrase B subunit, carboxyl terminus SMAL454_RS08275 PF00117 Glutamine amidotransferase class-I SMAL454_RS08275 PF06418 CTP synthase N-terminus SMAL454_RS08280 PF00793 DAHP synthetase I family SMAL454_RS08295 PF00113 Enolase, C-terminal TIM barrel domain SMAL454_RS08295 PF03952 Enolase, N-terminal domain SMAL454_RS08300 PF04977 Septum formation initiator SMAL454_RS08305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SMAL454_RS08310 PF02542 YgbB family SMAL454_RS08315 PF01142 tRNA pseudouridine synthase D (TruD) SMAL454_RS08320 PF01713 Smr domain SMAL454_RS08325 PF01975 Survival protein SurE SMAL454_RS08340 PF01551 Peptidase family M23 SMAL454_RS08340 PF01476 LysM domain SMAL454_RS08350 PF04430 Protein of unknown function (DUF498/DUF598) SMAL454_RS08355 PF01985 CRS1 / YhbY (CRM) domain SMAL454_RS08360 PF01728 FtsJ-like methyltransferase SMAL454_RS08365 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS08365 PF17862 AAA+ lid domain SMAL454_RS08365 PF06480 FtsH Extracellular SMAL454_RS08365 PF01434 Peptidase family M41 SMAL454_RS08375 PF00809 Pterin binding enzyme SMAL454_RS08385 PF17209 Hfq protein SMAL454_RS08390 PF16360 GTP-binding GTPase Middle Region SMAL454_RS08390 PF13167 GTP-binding GTPase N-terminal SMAL454_RS08390 PF01926 50S ribosome-binding GTPase SMAL454_RS08395 PF02464 Competence-damaged protein SMAL454_RS08400 PF03109 ABC1 family SMAL454_RS08405 PF01726 LexA DNA binding domain SMAL454_RS08405 PF00717 Peptidase S24-like SMAL454_RS08410 PF00154 recA bacterial DNA recombination protein SMAL454_RS08415 PF02631 RecX family SMAL454_RS08420 PF02272 DHHA1 domain SMAL454_RS08420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMAL454_RS08420 PF01411 tRNA synthetases class II (A) SMAL454_RS08425 PF02599 Global regulator protein family SMAL454_RS08450 PF17831 Pyruvate dehydrogenase E1 component middle domain SMAL454_RS08450 PF00456 Transketolase, thiamine diphosphate binding domain SMAL454_RS08475 PF16655 PhoD-like phosphatase, N-terminal domain SMAL454_RS08475 PF09423 PhoD-like phosphatase SMAL454_RS08480 PF04185 Phosphoesterase family SMAL454_RS08480 PF05506 Domain of unknown function (DUF756) SMAL454_RS08485 PF00593 TonB dependent receptor SMAL454_RS08485 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS08490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMAL454_RS08495 PF00034 Cytochrome c SMAL454_RS08495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMAL454_RS08505 PF07690 Major Facilitator Superfamily SMAL454_RS08515 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS08515 PF07660 Secretin and TonB N terminus short domain SMAL454_RS08515 PF00593 TonB dependent receptor SMAL454_RS08520 PF02678 Pirin SMAL454_RS08520 PF17954 Quercetinase C-terminal cupin domain SMAL454_RS08525 PF03466 LysR substrate binding domain SMAL454_RS08525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS08550 PF08543 Phosphomethylpyrimidine kinase SMAL454_RS08550 PF02581 Thiamine monophosphate synthase SMAL454_RS08565 PF02562 PhoH-like protein SMAL454_RS08565 PF13638 PIN domain SMAL454_RS08570 PF00578 AhpC/TSA family SMAL454_RS08580 PF00701 Dihydrodipicolinate synthetase family SMAL454_RS08590 PF11953 Domain of unknown function (DUF3470) SMAL454_RS08590 PF00037 4Fe-4S binding domain SMAL454_RS08595 PF00083 Sugar (and other) transporter SMAL454_RS08605 PF01743 Poly A polymerase head domain SMAL454_RS08605 PF12627 Probable RNA and SrmB- binding site of polymerase A SMAL454_RS08605 PF12626 Polymerase A arginine-rich C-terminus SMAL454_RS08610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMAL454_RS08615 PF02548 Ketopantoate hydroxymethyltransferase SMAL454_RS08620 PF02569 Pantoate-beta-alanine ligase SMAL454_RS08630 PF02261 Aspartate decarboxylase SMAL454_RS08635 PF00342 Phosphoglucose isomerase SMAL454_RS08640 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS08640 PF00072 Response regulator receiver domain SMAL454_RS08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS08645 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS08650 PF04551 GcpE protein SMAL454_RS08655 PF01569 PAP2 superfamily SMAL454_RS08665 PF01081 KDPG and KHG aldolase SMAL454_RS08670 PF00920 Dehydratase family SMAL454_RS08675 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SMAL454_RS08680 PF02685 Glucokinase SMAL454_RS08685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SMAL454_RS08685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SMAL454_RS08690 PF03459 TOBE domain SMAL454_RS08690 PF17912 MalK OB fold domain SMAL454_RS08690 PF00005 ABC transporter SMAL454_RS08705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMAL454_RS08710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMAL454_RS08715 PF00890 FAD binding domain SMAL454_RS08715 PF02910 Fumarate reductase flavoprotein C-term SMAL454_RS08720 PF13237 4Fe-4S dicluster domain SMAL454_RS08720 PF13085 2Fe-2S iron-sulfur cluster binding domain SMAL454_RS08725 PF03937 Flavinator of succinate dehydrogenase SMAL454_RS08735 PF12704 MacB-like periplasmic core domain SMAL454_RS08735 PF02687 FtsX-like permease family SMAL454_RS08740 PF00005 ABC transporter SMAL454_RS08750 PF04362 Bacterial Fe(2+) trafficking SMAL454_RS08755 PF00633 Helix-hairpin-helix motif SMAL454_RS08755 PF00730 HhH-GPD superfamily base excision DNA repair protein SMAL454_RS08755 PF14815 NUDIX domain SMAL454_RS08760 PF00448 SRP54-type protein, GTPase domain SMAL454_RS08760 PF02881 SRP54-type protein, helical bundle domain SMAL454_RS08770 PF00183 Hsp90 protein SMAL454_RS08770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS08780 PF01467 Cytidylyltransferase-like SMAL454_RS08790 PF00037 4Fe-4S binding domain SMAL454_RS08800 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS08840 PF00719 Inorganic pyrophosphatase SMAL454_RS08850 PF03441 FAD binding domain of DNA photolyase SMAL454_RS08850 PF00875 DNA photolyase SMAL454_RS08855 PF00691 OmpA family SMAL454_RS08855 PF13488 Glycine zipper SMAL454_RS08860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS08860 PF03466 LysR substrate binding domain SMAL454_RS08875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS08880 PF00873 AcrB/AcrD/AcrF family SMAL454_RS08885 PF00106 short chain dehydrogenase SMAL454_RS08890 PF02321 Outer membrane efflux protein SMAL454_RS08960 PF01668 SmpB protein SMAL454_RS08965 PF03364 Polyketide cyclase / dehydrase and lipid transport SMAL454_RS08970 PF03658 RnfH family Ubiquitin SMAL454_RS08975 PF04355 SmpA / OmlA family SMAL454_RS08980 PF01475 Ferric uptake regulator family SMAL454_RS08990 PF03466 LysR substrate binding domain SMAL454_RS08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS08995 PF02463 RecF/RecN/SMC N terminal domain SMAL454_RS09000 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SMAL454_RS09000 PF01628 HrcA protein C terminal domain SMAL454_RS09005 PF01025 GrpE SMAL454_RS09010 PF00012 Hsp70 protein SMAL454_RS09015 PF00226 DnaJ domain SMAL454_RS09015 PF01556 DnaJ C terminal domain SMAL454_RS09015 PF00684 DnaJ central domain SMAL454_RS09020 PF02311 AraC-like ligand binding domain SMAL454_RS09020 PF12833 Helix-turn-helix domain SMAL454_RS09025 PF07690 Major Facilitator Superfamily SMAL454_RS09030 PF08543 Phosphomethylpyrimidine kinase SMAL454_RS09045 PF00005 ABC transporter SMAL454_RS09045 PF00664 ABC transporter transmembrane region SMAL454_RS09050 PF01205 Uncharacterized protein family UPF0029 SMAL454_RS09060 PF04542 Sigma-70 region 2 SMAL454_RS09060 PF04545 Sigma-70, region 4 SMAL454_RS09065 PF00563 EAL domain SMAL454_RS09065 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS09065 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS09070 PF03641 Possible lysine decarboxylase SMAL454_RS09075 PF00202 Aminotransferase class-III SMAL454_RS09080 PF02547 Queuosine biosynthesis protein SMAL454_RS09085 PF01702 Queuine tRNA-ribosyltransferase SMAL454_RS09090 PF02699 Preprotein translocase subunit SMAL454_RS09095 PF02355 Protein export membrane protein SMAL454_RS09095 PF13721 SecD export protein N-terminal TM region SMAL454_RS09095 PF07549 SecD/SecF GG Motif SMAL454_RS09100 PF07549 SecD/SecF GG Motif SMAL454_RS09100 PF02355 Protein export membrane protein SMAL454_RS09105 PF07055 Enoyl reductase FAD binding domain SMAL454_RS09105 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SMAL454_RS09105 PF12241 Trans-2-enoyl-CoA reductase catalytic region SMAL454_RS09110 PF00563 EAL domain SMAL454_RS09110 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS09110 PF00072 Response regulator receiver domain SMAL454_RS09120 PF07152 YaeQ protein SMAL454_RS09125 PF00849 RNA pseudouridylate synthase SMAL454_RS09130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SMAL454_RS09135 PF00313 'Cold-shock' DNA-binding domain SMAL454_RS09140 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS09145 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SMAL454_RS09150 PF00156 Phosphoribosyl transferase domain SMAL454_RS09155 PF00271 Helicase conserved C-terminal domain SMAL454_RS09155 PF00270 DEAD/DEAH box helicase SMAL454_RS09155 PF03880 DbpA RNA binding domain SMAL454_RS09160 PF03601 Conserved hypothetical protein 698 SMAL454_RS09165 PF03466 LysR substrate binding domain SMAL454_RS09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS09170 PF12848 ABC transporter SMAL454_RS09170 PF00005 ABC transporter SMAL454_RS09170 PF16326 ABC transporter C-terminal domain SMAL454_RS09175 PF00034 Cytochrome c SMAL454_RS09185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS09190 PF00873 AcrB/AcrD/AcrF family SMAL454_RS09195 PF00873 AcrB/AcrD/AcrF family SMAL454_RS09215 PF00795 Carbon-nitrogen hydrolase SMAL454_RS09220 PF04371 Porphyromonas-type peptidyl-arginine deiminase SMAL454_RS09230 PF00444 Ribosomal protein L36 SMAL454_RS09235 PF02224 Cytidylate kinase SMAL454_RS09240 PF00575 S1 RNA binding domain SMAL454_RS09245 PF00216 Bacterial DNA-binding protein SMAL454_RS09255 PF18073 Rubredoxin metal binding domain SMAL454_RS09260 PF00953 Glycosyl transferase family 4 SMAL454_RS09265 PF02719 Polysaccharide biosynthesis protein SMAL454_RS09270 PF00483 Nucleotidyl transferase SMAL454_RS09275 PF02803 Thiolase, C-terminal domain SMAL454_RS09275 PF00108 Thiolase, N-terminal domain SMAL454_RS09280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMAL454_RS09280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMAL454_RS09280 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS09290 PF00334 Nucleoside diphosphate kinase SMAL454_RS09295 PF04055 Radical SAM superfamily SMAL454_RS09305 PF13464 Domain of unknown function (DUF4115) SMAL454_RS09315 PF01011 PQQ enzyme repeat SMAL454_RS09315 PF13360 PQQ-like domain SMAL454_RS09320 PF01926 50S ribosome-binding GTPase SMAL454_RS09320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SMAL454_RS09340 PF00899 ThiF family SMAL454_RS09345 PF00999 Sodium/hydrogen exchanger family SMAL454_RS09345 PF02254 TrkA-N domain SMAL454_RS09350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMAL454_RS09350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMAL454_RS09355 PF00478 IMP dehydrogenase / GMP reductase domain SMAL454_RS09355 PF00571 CBS domain SMAL454_RS09360 PF02540 NAD synthase SMAL454_RS09360 PF00117 Glutamine amidotransferase class-I SMAL454_RS09360 PF00958 GMP synthase C terminal domain SMAL454_RS09395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS09395 PF03466 LysR substrate binding domain SMAL454_RS09405 PF00106 short chain dehydrogenase SMAL454_RS09420 PF00106 short chain dehydrogenase SMAL454_RS09445 PF01022 Bacterial regulatory protein, arsR family SMAL454_RS09460 PF06100 MCRA family SMAL454_RS09485 PF01965 DJ-1/PfpI family SMAL454_RS09490 PF00593 TonB dependent receptor SMAL454_RS09490 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS09495 PF03358 NADPH-dependent FMN reductase SMAL454_RS09505 PF00296 Luciferase-like monooxygenase SMAL454_RS09510 PF00296 Luciferase-like monooxygenase SMAL454_RS09515 PF01546 Peptidase family M20/M25/M40 SMAL454_RS09515 PF07687 Peptidase dimerisation domain SMAL454_RS09520 PF00583 Acetyltransferase (GNAT) family SMAL454_RS09525 PF00005 ABC transporter SMAL454_RS09535 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMAL454_RS09550 PF12706 Beta-lactamase superfamily domain SMAL454_RS09555 PF08361 MAATS-type transcriptional repressor, C-terminal region SMAL454_RS09555 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS09560 PF12792 CSS motif domain associated with EAL SMAL454_RS09560 PF00563 EAL domain SMAL454_RS09570 PF00106 short chain dehydrogenase SMAL454_RS09580 PF00581 Rhodanese-like domain SMAL454_RS09590 PF01636 Phosphotransferase enzyme family SMAL454_RS09600 PF17932 Tetracyclin repressor-like, C-terminal domain SMAL454_RS09600 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS09615 PF00892 EamA-like transporter family SMAL454_RS09620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SMAL454_RS09620 PF01565 FAD binding domain SMAL454_RS09625 PF01180 Dihydroorotate dehydrogenase SMAL454_RS09645 PF00171 Aldehyde dehydrogenase family SMAL454_RS09790 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS09790 PF00072 Response regulator receiver domain SMAL454_RS09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS09795 PF13426 PAS domain SMAL454_RS09795 PF00072 Response regulator receiver domain SMAL454_RS09800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMAL454_RS09800 PF00072 Response regulator receiver domain SMAL454_RS09800 PF01627 Hpt domain SMAL454_RS09800 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS09800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS09800 PF00672 HAMP domain SMAL454_RS09805 PF01739 CheR methyltransferase, SAM binding domain SMAL454_RS09805 PF03705 CheR methyltransferase, all-alpha domain SMAL454_RS09810 PF01339 CheB methylesterase SMAL454_RS09815 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS09815 PF00072 Response regulator receiver domain SMAL454_RS09825 PF01022 Bacterial regulatory protein, arsR family SMAL454_RS09830 PF04143 Sulphur transport SMAL454_RS09865 PF03447 Homoserine dehydrogenase, NAD binding domain SMAL454_RS09865 PF00742 Homoserine dehydrogenase SMAL454_RS09865 PF13840 ACT domain SMAL454_RS09865 PF00696 Amino acid kinase family SMAL454_RS09865 PF01842 ACT domain SMAL454_RS09870 PF00288 GHMP kinases N terminal domain SMAL454_RS09870 PF08544 GHMP kinases C terminal SMAL454_RS09875 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS09875 PF14821 Threonine synthase N terminus SMAL454_RS09880 PF13545 Crp-like helix-turn-helix domain SMAL454_RS09880 PF00027 Cyclic nucleotide-binding domain SMAL454_RS09885 PF03129 Anticodon binding domain SMAL454_RS09885 PF13393 Histidyl-tRNA synthetase SMAL454_RS09895 PF01634 ATP phosphoribosyltransferase SMAL454_RS09895 PF08029 HisG, C-terminal domain SMAL454_RS09900 PF00815 Histidinol dehydrogenase SMAL454_RS09905 PF00155 Aminotransferase class I and II SMAL454_RS09910 PF00475 Imidazoleglycerol-phosphate dehydratase SMAL454_RS09910 PF08645 Polynucleotide kinase 3 phosphatase SMAL454_RS09915 PF00117 Glutamine amidotransferase class-I SMAL454_RS09920 PF00977 Histidine biosynthesis protein SMAL454_RS09925 PF00977 Histidine biosynthesis protein SMAL454_RS09930 PF01502 Phosphoribosyl-AMP cyclohydrolase SMAL454_RS09930 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SMAL454_RS09945 PF02685 Glucokinase SMAL454_RS09955 PF03932 CutC family SMAL454_RS09960 PF00593 TonB dependent receptor SMAL454_RS09960 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS09965 PF00403 Heavy-metal-associated domain SMAL454_RS09970 PF00376 MerR family regulatory protein SMAL454_RS09970 PF09278 MerR, DNA binding SMAL454_RS09985 PF17678 Glycosyl hydrolase family 92 N-terminal domain SMAL454_RS09985 PF07971 Glycosyl hydrolase family 92 SMAL454_RS09990 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS09995 PF07690 Major Facilitator Superfamily SMAL454_RS10000 PF00294 pfkB family carbohydrate kinase SMAL454_RS10020 PF03079 ARD/ARD' family SMAL454_RS10025 PF00596 Class II Aldolase and Adducin N-terminal domain SMAL454_RS10040 PF13520 Amino acid permease SMAL454_RS10045 PF13520 Amino acid permease SMAL454_RS10055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMAL454_RS10055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMAL454_RS10060 PF02913 FAD linked oxidases, C-terminal domain SMAL454_RS10060 PF01565 FAD binding domain SMAL454_RS10075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10075 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10075 PF00672 HAMP domain SMAL454_RS10080 PF00072 Response regulator receiver domain SMAL454_RS10080 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS10085 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS10085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS10090 PF00873 AcrB/AcrD/AcrF family SMAL454_RS10105 PF09285 Elongation factor P, C-terminal SMAL454_RS10105 PF08207 Elongation factor P (EF-P) KOW-like domain SMAL454_RS10105 PF01132 Elongation factor P (EF-P) OB domain SMAL454_RS10110 PF00106 short chain dehydrogenase SMAL454_RS10115 PF00682 HMGL-like SMAL454_RS10125 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS10125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMAL454_RS10125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMAL454_RS10135 PF07664 Ferrous iron transport protein B C terminus SMAL454_RS10135 PF02421 Ferrous iron transport protein B SMAL454_RS10135 PF07670 Nucleoside recognition SMAL454_RS10150 PF02525 Flavodoxin-like fold SMAL454_RS10165 PF05173 Dihydrodipicolinate reductase, C-terminus SMAL454_RS10165 PF01113 Dihydrodipicolinate reductase, N-terminus SMAL454_RS10170 PF00117 Glutamine amidotransferase class-I SMAL454_RS10170 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SMAL454_RS10175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMAL454_RS10175 PF02142 MGS-like domain SMAL454_RS10175 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SMAL454_RS10180 PF03449 Transcription elongation factor, N-terminal SMAL454_RS10180 PF01272 Transcription elongation factor, GreA/GreB, C-term SMAL454_RS10195 PF17768 RecJ OB domain SMAL454_RS10195 PF01368 DHH family SMAL454_RS10195 PF02272 DHHA1 domain SMAL454_RS10200 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SMAL454_RS10215 PF04397 LytTr DNA-binding domain SMAL454_RS10215 PF00072 Response regulator receiver domain SMAL454_RS10230 PF00171 Aldehyde dehydrogenase family SMAL454_RS10235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMAL454_RS10235 PF00205 Thiamine pyrophosphate enzyme, central domain SMAL454_RS10235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMAL454_RS10240 PF01336 OB-fold nucleic acid binding domain SMAL454_RS10240 PF00152 tRNA synthetases class II (D, K and N) SMAL454_RS10250 PF01627 Hpt domain SMAL454_RS10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10250 PF00072 Response regulator receiver domain SMAL454_RS10250 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10255 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS10260 PF13193 AMP-binding enzyme C-terminal domain SMAL454_RS10260 PF00501 AMP-binding enzyme SMAL454_RS10265 PF00732 GMC oxidoreductase SMAL454_RS10265 PF05199 GMC oxidoreductase SMAL454_RS10270 PF00171 Aldehyde dehydrogenase family SMAL454_RS10275 PF13977 BetI-type transcriptional repressor, C-terminal SMAL454_RS10275 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS10280 PF02028 BCCT, betaine/carnitine/choline family transporter SMAL454_RS10285 PF00694 Aconitase C-terminal domain SMAL454_RS10285 PF00330 Aconitase family (aconitate hydratase) SMAL454_RS10305 PF11791 Aconitate B N-terminal domain SMAL454_RS10305 PF00330 Aconitase family (aconitate hydratase) SMAL454_RS10305 PF06434 Aconitate hydratase 2 N-terminus SMAL454_RS10320 PF01339 CheB methylesterase SMAL454_RS10320 PF00072 Response regulator receiver domain SMAL454_RS10325 PF03975 CheD chemotactic sensory transduction SMAL454_RS10330 PF03705 CheR methyltransferase, all-alpha domain SMAL454_RS10330 PF01739 CheR methyltransferase, SAM binding domain SMAL454_RS10335 PF02203 Tar ligand binding domain homologue SMAL454_RS10335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS10335 PF00672 HAMP domain SMAL454_RS10340 PF00672 HAMP domain SMAL454_RS10340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS10340 PF02203 Tar ligand binding domain homologue SMAL454_RS10350 PF01584 CheW-like domain SMAL454_RS10355 PF07317 Flagellar regulator YcgR SMAL454_RS10355 PF07238 PilZ domain SMAL454_RS10360 PF02203 Tar ligand binding domain homologue SMAL454_RS10360 PF00672 HAMP domain SMAL454_RS10360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10365 PF01627 Hpt domain SMAL454_RS10365 PF02895 Signal transducing histidine kinase, homodimeric domain SMAL454_RS10365 PF09078 CheY binding SMAL454_RS10365 PF01584 CheW-like domain SMAL454_RS10370 PF00072 Response regulator receiver domain SMAL454_RS10380 PF01584 CheW-like domain SMAL454_RS10385 PF13614 AAA domain SMAL454_RS10390 PF00691 OmpA family SMAL454_RS10390 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMAL454_RS10395 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS10400 PF00072 Response regulator receiver domain SMAL454_RS10400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10400 PF02895 Signal transducing histidine kinase, homodimeric domain SMAL454_RS10400 PF01584 CheW-like domain SMAL454_RS10400 PF01627 Hpt domain SMAL454_RS10405 PF04344 Chemotaxis phosphatase, CheZ SMAL454_RS10410 PF00072 Response regulator receiver domain SMAL454_RS10415 PF04545 Sigma-70, region 4 SMAL454_RS10415 PF04542 Sigma-70 region 2 SMAL454_RS10415 PF04539 Sigma-70 region 3 SMAL454_RS10420 PF10609 NUBPL iron-transfer P-loop NTPase SMAL454_RS10425 PF00448 SRP54-type protein, GTPase domain SMAL454_RS10430 PF00771 FHIPEP family SMAL454_RS10435 PF01312 FlhB HrpN YscU SpaS Family SMAL454_RS10445 PF00563 EAL domain SMAL454_RS10445 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS10445 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS10450 PF01311 Bacterial export proteins, family 1 SMAL454_RS10455 PF01313 Bacterial export proteins, family 3 SMAL454_RS10460 PF00813 FliP family SMAL454_RS10465 PF04347 Flagellar biosynthesis protein, FliO SMAL454_RS10470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMAL454_RS10475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMAL454_RS10475 PF02154 Flagellar motor switch protein FliM SMAL454_RS10495 PF18269 T3SS EscN ATPase C-terminal domain SMAL454_RS10495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMAL454_RS10505 PF14842 FliG N-terminal domain SMAL454_RS10505 PF14841 FliG middle domain SMAL454_RS10505 PF01706 FliG C-terminal domain SMAL454_RS10510 PF08345 Flagellar M-ring protein C-terminal SMAL454_RS10510 PF01514 Secretory protein of YscJ/FliF family SMAL454_RS10515 PF02049 Flagellar hook-basal body complex protein FliE SMAL454_RS10525 PF06490 Flagellar regulatory protein FleQ SMAL454_RS10525 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS10525 PF00158 Sigma-54 interaction domain SMAL454_RS10530 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS10530 PF00072 Response regulator receiver domain SMAL454_RS10535 PF04963 Sigma-54 factor, core binding domain SMAL454_RS10535 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMAL454_RS10535 PF04552 Sigma-54, DNA binding domain SMAL454_RS10540 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS10540 PF00072 Response regulator receiver domain SMAL454_RS10555 PF02561 Flagellar protein FliS SMAL454_RS10560 PF07195 Flagellar hook-associated protein 2 C-terminus SMAL454_RS10560 PF02465 Flagellar hook-associated protein 2 N-terminus SMAL454_RS10565 PF00669 Bacterial flagellin N-terminal helical region SMAL454_RS10565 PF00700 Bacterial flagellin C-terminal helical region SMAL454_RS10570 PF00669 Bacterial flagellin N-terminal helical region SMAL454_RS10570 PF07196 Flagellin hook IN motif SMAL454_RS10570 PF00700 Bacterial flagellin C-terminal helical region SMAL454_RS10575 PF00669 Bacterial flagellin N-terminal helical region SMAL454_RS10575 PF00700 Bacterial flagellin C-terminal helical region SMAL454_RS10585 PF00460 Flagella basal body rod protein SMAL454_RS10585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMAL454_RS10590 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SMAL454_RS10590 PF10135 Rod binding protein SMAL454_RS10595 PF02119 Flagellar P-ring protein SMAL454_RS10600 PF02107 Flagellar L-ring protein SMAL454_RS10605 PF00460 Flagella basal body rod protein SMAL454_RS10605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMAL454_RS10610 PF00460 Flagella basal body rod protein SMAL454_RS10610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMAL454_RS10615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMAL454_RS10615 PF07559 Flagellar basal body protein FlaE SMAL454_RS10615 PF00460 Flagella basal body rod protein SMAL454_RS10625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMAL454_RS10625 PF00460 Flagella basal body rod protein SMAL454_RS10630 PF00460 Flagella basal body rod protein SMAL454_RS10635 PF01584 CheW-like domain SMAL454_RS10635 PF00072 Response regulator receiver domain SMAL454_RS10655 PF13188 PAS domain SMAL454_RS10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10655 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10655 PF00989 PAS fold SMAL454_RS10655 PF13426 PAS domain SMAL454_RS10660 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS10660 PF00563 EAL domain SMAL454_RS10660 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS10665 PF07730 Histidine kinase SMAL454_RS10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10670 PF00563 EAL domain SMAL454_RS10670 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS10670 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS10685 PF12729 Four helix bundle sensory module for signal transduction SMAL454_RS10685 PF00672 HAMP domain SMAL454_RS10685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS10690 PF04356 Protein of unknown function (DUF489) SMAL454_RS10700 PF00293 NUDIX domain SMAL454_RS10710 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMAL454_RS10715 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase SMAL454_RS10720 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS10720 PF07724 AAA domain (Cdc48 subfamily) SMAL454_RS10720 PF17871 AAA lid domain SMAL454_RS10720 PF02861 Clp amino terminal domain, pathogenicity island component SMAL454_RS10720 PF10431 C-terminal, D2-small domain, of ClpB protein SMAL454_RS10730 PF01176 Translation initiation factor 1A / IF-1 SMAL454_RS10735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SMAL454_RS10750 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS10755 PF01580 FtsK/SpoIIIE family SMAL454_RS10755 PF09397 Ftsk gamma domain SMAL454_RS10755 PF17854 FtsK alpha domain SMAL454_RS10755 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SMAL454_RS10765 PF03548 Outer membrane lipoprotein carrier protein LolA SMAL454_RS10770 PF12002 MgsA AAA+ ATPase C terminal SMAL454_RS10770 PF16193 AAA C-terminal domain SMAL454_RS10770 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS10785 PF00756 Putative esterase SMAL454_RS10795 PF01497 Periplasmic binding protein SMAL454_RS10800 PF01032 FecCD transport family SMAL454_RS10805 PF00005 ABC transporter SMAL454_RS10815 PF14492 Elongation Factor G, domain II SMAL454_RS10815 PF03764 Elongation factor G, domain IV SMAL454_RS10815 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS10815 PF00679 Elongation factor G C-terminus SMAL454_RS10815 PF03144 Elongation factor Tu domain 2 SMAL454_RS10830 PF00072 Response regulator receiver domain SMAL454_RS10830 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10830 PF01627 Hpt domain SMAL454_RS10830 PF17149 Periplasmic sensor domain found in signal transduction proteins SMAL454_RS10830 PF00672 HAMP domain SMAL454_RS10870 PF01593 Flavin containing amine oxidoreductase SMAL454_RS10885 PF04542 Sigma-70 region 2 SMAL454_RS10885 PF08281 Sigma-70, region 4 SMAL454_RS10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10900 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10900 PF08448 PAS fold SMAL454_RS10900 PF13188 PAS domain SMAL454_RS10900 PF00072 Response regulator receiver domain SMAL454_RS10905 PF00072 Response regulator receiver domain SMAL454_RS10910 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS10910 PF08446 PAS fold SMAL454_RS10910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS10910 PF00360 Phytochrome region SMAL454_RS10910 PF01590 GAF domain SMAL454_RS10920 PF03073 TspO/MBR family SMAL454_RS10930 PF00293 NUDIX domain SMAL454_RS10995 PF01026 TatD related DNase SMAL454_RS11000 PF13276 HTH-like domain SMAL454_RS11000 PF00665 Integrase core domain SMAL454_RS11000 PF13333 Integrase core domain SMAL454_RS11025 PF02080 TrkA-C domain SMAL454_RS11025 PF02254 TrkA-N domain SMAL454_RS11025 PF00999 Sodium/hydrogen exchanger family SMAL454_RS11030 PF00085 Thioredoxin SMAL454_RS11060 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS11060 PF17862 AAA+ lid domain SMAL454_RS11060 PF01434 Peptidase family M41 SMAL454_RS11065 PF13091 PLD-like domain SMAL454_RS11070 PF02861 Clp amino terminal domain, pathogenicity island component SMAL454_RS11070 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS11070 PF07724 AAA domain (Cdc48 subfamily) SMAL454_RS11070 PF17871 AAA lid domain SMAL454_RS11070 PF10431 C-terminal, D2-small domain, of ClpB protein SMAL454_RS11075 PF00011 Hsp20/alpha crystallin family SMAL454_RS11080 PF12728 Helix-turn-helix domain SMAL454_RS11140 PF12804 MobA-like NTP transferase domain SMAL454_RS11145 PF02625 XdhC and CoxI family SMAL454_RS11145 PF13478 XdhC Rossmann domain SMAL454_RS11150 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMAL454_RS11150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMAL454_RS11155 PF00941 FAD binding domain in molybdopterin dehydrogenase SMAL454_RS11155 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMAL454_RS11160 PF00111 2Fe-2S iron-sulfur cluster binding domain SMAL454_RS11160 PF01799 [2Fe-2S] binding domain SMAL454_RS11160 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMAL454_RS11180 PF00561 alpha/beta hydrolase fold SMAL454_RS11185 PF01965 DJ-1/PfpI family SMAL454_RS11205 PF01266 FAD dependent oxidoreductase SMAL454_RS11225 PF04679 ATP dependent DNA ligase C terminal region SMAL454_RS11225 PF01068 ATP dependent DNA ligase domain SMAL454_RS11225 PF13298 DNA polymerase Ligase (LigD) SMAL454_RS11235 PF05974 Domain of unknown function (DUF892) SMAL454_RS11240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SMAL454_RS11240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SMAL454_RS11260 PF05067 Manganese containing catalase SMAL454_RS11265 PF05974 Domain of unknown function (DUF892) SMAL454_RS11295 PF00398 Ribosomal RNA adenine dimethylase SMAL454_RS11315 PF13823 Alcohol dehydrogenase GroES-associated SMAL454_RS11315 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS11315 PF00107 Zinc-binding dehydrogenase SMAL454_RS11345 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS11350 PF05524 PEP-utilising enzyme, N-terminal SMAL454_RS11350 PF00391 PEP-utilising enzyme, mobile domain SMAL454_RS11350 PF02896 PEP-utilising enzyme, TIM barrel domain SMAL454_RS11350 PF00381 PTS HPr component phosphorylation site SMAL454_RS11350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SMAL454_RS11355 PF00294 pfkB family carbohydrate kinase SMAL454_RS11360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SMAL454_RS11375 PF01638 HxlR-like helix-turn-helix SMAL454_RS11380 PF02469 Fasciclin domain SMAL454_RS11385 PF00144 Beta-lactamase SMAL454_RS11395 PF00593 TonB dependent receptor SMAL454_RS11395 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS11405 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS11410 PF14310 Fibronectin type III-like domain SMAL454_RS11410 PF00933 Glycosyl hydrolase family 3 N terminal domain SMAL454_RS11410 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMAL454_RS11415 PF03600 Citrate transporter SMAL454_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS11430 PF00005 ABC transporter SMAL454_RS11440 PF04303 PrpF protein SMAL454_RS11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS11445 PF03466 LysR substrate binding domain SMAL454_RS11450 PF17755 UvrA DNA-binding domain SMAL454_RS11470 PF02219 Methylenetetrahydrofolate reductase SMAL454_RS11475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS11475 PF03466 LysR substrate binding domain SMAL454_RS11480 PF03358 NADPH-dependent FMN reductase SMAL454_RS11490 PF08267 Cobalamin-independent synthase, N-terminal domain SMAL454_RS11490 PF01717 Cobalamin-independent synthase, Catalytic domain SMAL454_RS11505 PF00144 Beta-lactamase SMAL454_RS11510 PF10503 Esterase PHB depolymerase SMAL454_RS11515 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS11515 PF00593 TonB dependent receptor SMAL454_RS11520 PF00561 alpha/beta hydrolase fold SMAL454_RS11525 PF01575 MaoC like domain SMAL454_RS11530 PF00672 HAMP domain SMAL454_RS11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS11530 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS11535 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS11535 PF00072 Response regulator receiver domain SMAL454_RS11540 PF00501 AMP-binding enzyme SMAL454_RS11540 PF13193 AMP-binding enzyme C-terminal domain SMAL454_RS11545 PF03358 NADPH-dependent FMN reductase SMAL454_RS11555 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS11555 PF07729 FCD domain SMAL454_RS11565 PF14592 Chondroitinase B SMAL454_RS11570 PF05426 Alginate lyase SMAL454_RS11570 PF07940 Heparinase II/III-like protein SMAL454_RS11575 PF07690 Major Facilitator Superfamily SMAL454_RS11590 PF00294 pfkB family carbohydrate kinase SMAL454_RS11615 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS11635 PF03466 LysR substrate binding domain SMAL454_RS11660 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS11660 PF00072 Response regulator receiver domain SMAL454_RS11660 PF00158 Sigma-54 interaction domain SMAL454_RS11720 PF02245 Methylpurine-DNA glycosylase (MPG) SMAL454_RS11730 PF00563 EAL domain SMAL454_RS11730 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS11730 PF03707 Bacterial signalling protein N terminal repeat SMAL454_RS11735 PF03372 Endonuclease/Exonuclease/phosphatase family SMAL454_RS11740 PF00128 Alpha amylase, catalytic domain SMAL454_RS11740 PF16657 Maltogenic Amylase, C-terminal domain SMAL454_RS11745 PF00296 Luciferase-like monooxygenase SMAL454_RS11765 PF12704 MacB-like periplasmic core domain SMAL454_RS11765 PF02687 FtsX-like permease family SMAL454_RS11765 PF00005 ABC transporter SMAL454_RS11770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS11780 PF00072 Response regulator receiver domain SMAL454_RS11780 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS11785 PF00672 HAMP domain SMAL454_RS11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS11785 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS11795 PF06224 Winged helix DNA-binding domain SMAL454_RS11805 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS11805 PF00593 TonB dependent receptor SMAL454_RS11815 PF00561 alpha/beta hydrolase fold SMAL454_RS11825 PF00689 Cation transporting ATPase, C-terminus SMAL454_RS11825 PF00690 Cation transporter/ATPase, N-terminus SMAL454_RS11830 PF02308 MgtC family SMAL454_RS11835 PF08447 PAS fold SMAL454_RS11835 PF13493 Domain of unknown function (DUF4118) SMAL454_RS11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS11835 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS11835 PF00989 PAS fold SMAL454_RS11835 PF13426 PAS domain SMAL454_RS11840 PF00072 Response regulator receiver domain SMAL454_RS11840 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS11850 PF06772 Bacterial low temperature requirement A protein (LtrA) SMAL454_RS11875 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS11895 PF00384 Molybdopterin oxidoreductase SMAL454_RS11900 PF02634 FdhD/NarQ family SMAL454_RS11920 PF07690 Major Facilitator Superfamily SMAL454_RS11945 PF00005 ABC transporter SMAL454_RS11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS11960 PF03466 LysR substrate binding domain SMAL454_RS11965 PF00248 Aldo/keto reductase family SMAL454_RS11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS11985 PF03466 LysR substrate binding domain SMAL454_RS11995 PF00873 AcrB/AcrD/AcrF family SMAL454_RS12010 PF00072 Response regulator receiver domain SMAL454_RS12010 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS12015 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS12020 PF07971 Glycosyl hydrolase family 92 SMAL454_RS12020 PF17678 Glycosyl hydrolase family 92 N-terminal domain SMAL454_RS12035 PF00083 Sugar (and other) transporter SMAL454_RS12035 PF08946 Osmosensory transporter coiled coil SMAL454_RS12055 PF08447 PAS fold SMAL454_RS12055 PF07536 HWE histidine kinase SMAL454_RS12055 PF13426 PAS domain SMAL454_RS12075 PF07660 Secretin and TonB N terminus short domain SMAL454_RS12075 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS12075 PF00593 TonB dependent receptor SMAL454_RS12090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS12090 PF03466 LysR substrate binding domain SMAL454_RS12095 PF05726 Pirin C-terminal cupin domain SMAL454_RS12095 PF02678 Pirin SMAL454_RS12100 PF00857 Isochorismatase family SMAL454_RS12105 PF00857 Isochorismatase family SMAL454_RS12130 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS12135 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS12155 PF12019 Type II transport protein GspH SMAL454_RS12155 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS12160 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS12160 PF02501 Type II secretion system (T2SS), protein I SMAL454_RS12175 PF12849 PBP superfamily domain SMAL454_RS12180 PF00482 Type II secretion system (T2SS), protein F SMAL454_RS12185 PF00437 Type II/IV secretion system protein SMAL454_RS12190 PF03958 Bacterial type II/III secretion system short domain SMAL454_RS12190 PF00263 Bacterial type II and III secretion system protein SMAL454_RS12210 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS12210 PF08334 Type II secretion system (T2SS), protein G SMAL454_RS12240 PF01037 Lrp/AsnC ligand binding domain SMAL454_RS12255 PF00128 Alpha amylase, catalytic domain SMAL454_RS12255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMAL454_RS12265 PF00128 Alpha amylase, catalytic domain SMAL454_RS12270 PF02446 4-alpha-glucanotransferase SMAL454_RS12275 PF00128 Alpha amylase, catalytic domain SMAL454_RS12275 PF11941 Domain of unknown function (DUF3459) SMAL454_RS12275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMAL454_RS12280 PF02806 Alpha amylase, C-terminal all-beta domain SMAL454_RS12280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMAL454_RS12280 PF00128 Alpha amylase, catalytic domain SMAL454_RS12285 PF00534 Glycosyl transferases group 1 SMAL454_RS12285 PF08323 Starch synthase catalytic domain SMAL454_RS12290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS12290 PF08447 PAS fold SMAL454_RS12295 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS12295 PF00258 Flavodoxin SMAL454_RS12295 PF00667 FAD binding domain SMAL454_RS12300 PF00005 ABC transporter SMAL454_RS12300 PF08402 TOBE domain SMAL454_RS12305 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS12315 PF13545 Crp-like helix-turn-helix domain SMAL454_RS12315 PF00027 Cyclic nucleotide-binding domain SMAL454_RS12320 PF04055 Radical SAM superfamily SMAL454_RS12320 PF06969 HemN C-terminal domain SMAL454_RS12325 PF07690 Major Facilitator Superfamily SMAL454_RS12330 PF00639 PPIC-type PPIASE domain SMAL454_RS12330 PF09312 SurA N-terminal domain SMAL454_RS12335 PF02665 Nitrate reductase gamma subunit SMAL454_RS12340 PF02613 Nitrate reductase delta subunit SMAL454_RS12345 PF13247 4Fe-4S dicluster domain SMAL454_RS12345 PF14711 Respiratory nitrate reductase beta C-terminal SMAL454_RS12350 PF01568 Molydopterin dinucleotide binding domain SMAL454_RS12350 PF14710 Respiratory nitrate reductase alpha N-terminal SMAL454_RS12350 PF00384 Molybdopterin oxidoreductase SMAL454_RS12355 PF07690 Major Facilitator Superfamily SMAL454_RS12365 PF12804 MobA-like NTP transferase domain SMAL454_RS12370 PF02391 MoaE protein SMAL454_RS12380 PF03454 MoeA C-terminal region (domain IV) SMAL454_RS12380 PF00994 Probable molybdopterin binding domain SMAL454_RS12380 PF03453 MoeA N-terminal region (domain I and II) SMAL454_RS12385 PF00994 Probable molybdopterin binding domain SMAL454_RS12385 PF01967 MoaC family SMAL454_RS12390 PF04055 Radical SAM superfamily SMAL454_RS12390 PF06463 Molybdenum Cofactor Synthesis C SMAL454_RS12430 PF05593 RHS Repeat SMAL454_RS12430 PF03527 RHS protein SMAL454_RS12435 PF00561 alpha/beta hydrolase fold SMAL454_RS12440 PF02311 AraC-like ligand binding domain SMAL454_RS12440 PF12833 Helix-turn-helix domain SMAL454_RS12455 PF13533 Biotin-lipoyl like SMAL454_RS12460 PF02321 Outer membrane efflux protein SMAL454_RS12475 PF00072 Response regulator receiver domain SMAL454_RS12475 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS12480 PF00672 HAMP domain SMAL454_RS12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS12480 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS12485 PF01219 Prokaryotic diacylglycerol kinase SMAL454_RS12490 PF08019 Phosphoethanolamine transferase EptA/EptB SMAL454_RS12490 PF00884 Sulfatase SMAL454_RS12510 PF00691 OmpA family SMAL454_RS12525 PF00106 short chain dehydrogenase SMAL454_RS12530 PF00668 Condensation domain SMAL454_RS12530 PF00550 Phosphopantetheine attachment site SMAL454_RS12530 PF00975 Thioesterase domain SMAL454_RS12530 PF00501 AMP-binding enzyme SMAL454_RS12535 PF00550 Phosphopantetheine attachment site SMAL454_RS12535 PF00857 Isochorismatase family SMAL454_RS12540 PF00550 Phosphopantetheine attachment site SMAL454_RS12540 PF00857 Isochorismatase family SMAL454_RS12545 PF00501 AMP-binding enzyme SMAL454_RS12545 PF13193 AMP-binding enzyme C-terminal domain SMAL454_RS12550 PF00425 chorismate binding enzyme SMAL454_RS12555 PF07690 Major Facilitator Superfamily SMAL454_RS12560 PF12823 Domain of unknown function (DUF3817) SMAL454_RS12560 PF03176 MMPL family SMAL454_RS12565 PF00296 Luciferase-like monooxygenase SMAL454_RS12580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMAL454_RS12580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMAL454_RS12585 PF01613 Flavin reductase like domain SMAL454_RS12595 PF00487 Fatty acid desaturase SMAL454_RS12600 PF00970 Oxidoreductase FAD-binding domain SMAL454_RS12600 PF00111 2Fe-2S iron-sulfur cluster binding domain SMAL454_RS12600 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS12605 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS12610 PF03797 Autotransporter beta-domain SMAL454_RS12615 PF00593 TonB dependent receptor SMAL454_RS12615 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS12625 PF01325 Iron dependent repressor, N-terminal DNA binding domain SMAL454_RS12625 PF02742 Iron dependent repressor, metal binding and dimerisation domain SMAL454_RS12630 PF01566 Natural resistance-associated macrophage protein SMAL454_RS12645 PF00268 Ribonucleotide reductase, small chain SMAL454_RS12650 PF00317 Ribonucleotide reductase, all-alpha domain SMAL454_RS12650 PF02867 Ribonucleotide reductase, barrel domain SMAL454_RS12650 PF03477 ATP cone domain SMAL454_RS12655 PF14765 Polyketide synthase dehydratase SMAL454_RS12655 PF00550 Phosphopantetheine attachment site SMAL454_RS12655 PF08659 KR domain SMAL454_RS12655 PF00698 Acyl transferase domain SMAL454_RS12655 PF00109 Beta-ketoacyl synthase, N-terminal domain SMAL454_RS12655 PF16197 Ketoacyl-synthetase C-terminal extension SMAL454_RS12655 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS12655 PF02801 Beta-ketoacyl synthase, C-terminal domain SMAL454_RS12660 PF00593 TonB dependent receptor SMAL454_RS12660 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS12665 PF02028 BCCT, betaine/carnitine/choline family transporter SMAL454_RS12690 PF00893 Small Multidrug Resistance protein SMAL454_RS12695 PF00893 Small Multidrug Resistance protein SMAL454_RS12700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS12700 PF03466 LysR substrate binding domain SMAL454_RS12710 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS12710 PF00593 TonB dependent receptor SMAL454_RS12710 PF07660 Secretin and TonB N terminus short domain SMAL454_RS12715 PF00654 Voltage gated chloride channel SMAL454_RS12720 PF02308 MgtC family SMAL454_RS12730 PF01209 ubiE/COQ5 methyltransferase family SMAL454_RS12740 PF00691 OmpA family SMAL454_RS12745 PF03895 YadA-like membrane anchor domain SMAL454_RS12745 PF05662 Coiled stalk of trimeric autotransporter adhesin SMAL454_RS12745 PF05658 Head domain of trimeric autotransporter adhesin SMAL454_RS12745 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS12745 PF03895 YadA-like membrane anchor domain SMAL454_RS12745 PF05658 Head domain of trimeric autotransporter adhesin SMAL454_RS12745 PF05662 Coiled stalk of trimeric autotransporter adhesin SMAL454_RS12745 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS12775 PF13629 Pilus formation protein N terminal region SMAL454_RS12775 PF04972 BON domain SMAL454_RS12775 PF00263 Bacterial type II and III secretion system protein SMAL454_RS12785 PF00437 Type II/IV secretion system protein SMAL454_RS12825 PF00561 alpha/beta hydrolase fold SMAL454_RS12830 PF05977 Transmembrane secretion effector SMAL454_RS12840 PF01979 Amidohydrolase family SMAL454_RS12850 PF00857 Isochorismatase family SMAL454_RS12855 PF12833 Helix-turn-helix domain SMAL454_RS12855 PF10114 Sensory domain found in PocR SMAL454_RS12865 PF00672 HAMP domain SMAL454_RS12865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS12865 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SMAL454_RS12865 PF07730 Histidine kinase SMAL454_RS12870 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS12870 PF00072 Response regulator receiver domain SMAL454_RS12875 PF07690 Major Facilitator Superfamily SMAL454_RS12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS12880 PF03466 LysR substrate binding domain SMAL454_RS12885 PF01979 Amidohydrolase family SMAL454_RS12895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS12895 PF03466 LysR substrate binding domain SMAL454_RS12905 PF01979 Amidohydrolase family SMAL454_RS12920 PF00593 TonB dependent receptor SMAL454_RS12920 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS12930 PF02611 CDP-diacylglycerol pyrophosphatase SMAL454_RS12950 PF01565 FAD binding domain SMAL454_RS12950 PF09330 D-lactate dehydrogenase, membrane binding SMAL454_RS12955 PF01070 FMN-dependent dehydrogenase SMAL454_RS12960 PF07729 FCD domain SMAL454_RS12960 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS12965 PF02652 L-lactate permease SMAL454_RS12970 PF02308 MgtC family SMAL454_RS12980 PF12833 Helix-turn-helix domain SMAL454_RS12995 PF07690 Major Facilitator Superfamily SMAL454_RS13000 PF03466 LysR substrate binding domain SMAL454_RS13000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS13005 PF14310 Fibronectin type III-like domain SMAL454_RS13005 PF00933 Glycosyl hydrolase family 3 N terminal domain SMAL454_RS13005 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMAL454_RS13005 PF07691 PA14 domain SMAL454_RS13025 PF03466 LysR substrate binding domain SMAL454_RS13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS13050 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMAL454_RS13050 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMAL454_RS13050 PF14579 Helix-hairpin-helix motif SMAL454_RS13050 PF02811 PHP domain SMAL454_RS13050 PF01336 OB-fold nucleic acid binding domain SMAL454_RS13060 PF00155 Aminotransferase class I and II SMAL454_RS13060 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS13065 PF01168 Alanine racemase, N-terminal domain SMAL454_RS13070 PF00958 GMP synthase C terminal domain SMAL454_RS13070 PF02540 NAD synthase SMAL454_RS13070 PF00117 Glutamine amidotransferase class-I SMAL454_RS13085 PF04542 Sigma-70 region 2 SMAL454_RS13085 PF08281 Sigma-70, region 4 SMAL454_RS13095 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS13095 PF00593 TonB dependent receptor SMAL454_RS13120 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SMAL454_RS13120 PF01276 Orn/Lys/Arg decarboxylase, major domain SMAL454_RS13120 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SMAL454_RS13125 PF13520 Amino acid permease SMAL454_RS13135 PF13098 Thioredoxin-like domain SMAL454_RS13140 PF00578 AhpC/TSA family SMAL454_RS13150 PF13411 MerR HTH family regulatory protein SMAL454_RS13205 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS13210 PF13426 PAS domain SMAL454_RS13210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS13210 PF08447 PAS fold SMAL454_RS13235 PF08448 PAS fold SMAL454_RS13235 PF08447 PAS fold SMAL454_RS13235 PF05231 MASE1 SMAL454_RS13235 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS13235 PF13426 PAS domain SMAL454_RS13235 PF00563 EAL domain SMAL454_RS13240 PF17674 HHH domain SMAL454_RS13240 PF00575 S1 RNA binding domain SMAL454_RS13240 PF09371 Tex-like protein N-terminal domain SMAL454_RS13240 PF16921 Tex protein YqgF-like domain SMAL454_RS13255 PF04024 PspC domain SMAL454_RS13260 PF17263 Family of unknown function (DUF5329) SMAL454_RS13265 PF00561 alpha/beta hydrolase fold SMAL454_RS13280 PF01554 MatE SMAL454_RS13300 PF03618 Kinase/pyrophosphorylase SMAL454_RS13305 PF02896 PEP-utilising enzyme, TIM barrel domain SMAL454_RS13305 PF00391 PEP-utilising enzyme, mobile domain SMAL454_RS13305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SMAL454_RS13310 PF00924 Mechanosensitive ion channel SMAL454_RS13310 PF05552 Conserved TM helix SMAL454_RS13315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS13325 PF00929 Exonuclease SMAL454_RS13330 PF14437 MafB19-like deaminase SMAL454_RS13335 PF01638 HxlR-like helix-turn-helix SMAL454_RS13340 PF02525 Flavodoxin-like fold SMAL454_RS13345 PF13673 Acetyltransferase (GNAT) domain SMAL454_RS13415 PF03135 CagE, TrbE, VirB family, component of type IV transporter system SMAL454_RS13420 PF05101 Type IV secretory pathway, VirB3-like protein SMAL454_RS13425 PF04956 TrbC/VIRB2 family SMAL454_RS13430 PF01464 Transglycosylase SLT domain SMAL454_RS13435 PF00437 Type II/IV secretion system protein SMAL454_RS13440 PF03743 Bacterial conjugation TrbI-like protein SMAL454_RS13450 PF04335 VirB8 protein SMAL454_RS13460 PF02534 Type IV secretory system Conjugative DNA transfer SMAL454_RS13475 PF07690 Major Facilitator Superfamily SMAL454_RS13480 PF09278 MerR, DNA binding SMAL454_RS13480 PF00376 MerR family regulatory protein SMAL454_RS13485 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS13485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS13510 PF13426 PAS domain SMAL454_RS13510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS13510 PF00072 Response regulator receiver domain SMAL454_RS13515 PF01494 FAD binding domain SMAL454_RS13520 PF17754 MftR C-terminal domain SMAL454_RS13520 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS13525 PF00593 TonB dependent receptor SMAL454_RS13525 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS13545 PF01638 HxlR-like helix-turn-helix SMAL454_RS13550 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS13550 PF00107 Zinc-binding dehydrogenase SMAL454_RS13570 PF03527 RHS protein SMAL454_RS13605 PF05662 Coiled stalk of trimeric autotransporter adhesin SMAL454_RS13605 PF05658 Head domain of trimeric autotransporter adhesin SMAL454_RS13605 PF03895 YadA-like membrane anchor domain SMAL454_RS13605 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS13620 PF01443 Viral (Superfamily 1) RNA helicase SMAL454_RS13620 PF03389 MobA/MobL family SMAL454_RS13620 PF17841 BID domain of Bartonella effector protein (Bep) SMAL454_RS13790 PF18818 Metallopeptidase superfamily domain SMAL454_RS13790 PF08401 Domain of unknown function (DUF1738) SMAL454_RS13790 PF13362 Toprim domain SMAL454_RS13810 PF02463 RecF/RecN/SMC N terminal domain SMAL454_RS13825 PF00717 Peptidase S24-like SMAL454_RS13825 PF12802 MarR family SMAL454_RS13835 PF11799 impB/mucB/samB family C-terminal domain SMAL454_RS13835 PF00817 impB/mucB/samB family SMAL454_RS13835 PF13438 Domain of unknown function (DUF4113) SMAL454_RS13835 PF11798 IMS family HHH motif SMAL454_RS13890 PF03466 LysR substrate binding domain SMAL454_RS13890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS13895 PF02525 Flavodoxin-like fold SMAL454_RS13900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMAL454_RS13900 PF02403 Seryl-tRNA synthetase N-terminal domain SMAL454_RS13905 PF03544 Gram-negative bacterial TonB protein C-terminal SMAL454_RS13915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMAL454_RS13920 PF00800 Prephenate dehydratase SMAL454_RS13920 PF01842 ACT domain SMAL454_RS13920 PF01817 Chorismate mutase type II SMAL454_RS13925 PF00266 Aminotransferase class-V SMAL454_RS13970 PF07969 Amidohydrolase family SMAL454_RS13975 PF00221 Aromatic amino acid lyase SMAL454_RS13985 PF17392 Urocanase C-terminal domain SMAL454_RS13985 PF01175 Urocanase Rossmann-like domain SMAL454_RS13985 PF17391 Urocanase N-terminal domain SMAL454_RS13990 PF00144 Beta-lactamase SMAL454_RS13995 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS13995 PF00593 TonB dependent receptor SMAL454_RS14025 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS14035 PF04371 Porphyromonas-type peptidyl-arginine deiminase SMAL454_RS14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS14040 PF03466 LysR substrate binding domain SMAL454_RS14090 PF00665 Integrase core domain SMAL454_RS14095 PF13360 PQQ-like domain SMAL454_RS14100 PF03989 DNA gyrase C-terminal domain, beta-propeller SMAL454_RS14100 PF00521 DNA gyrase/topoisomerase IV, subunit A SMAL454_RS14105 PF01008 Initiation factor 2 subunit family SMAL454_RS14115 PF00152 tRNA synthetases class II (D, K and N) SMAL454_RS14125 PF00533 BRCA1 C Terminus (BRCT) domain SMAL454_RS14125 PF01653 NAD-dependent DNA ligase adenylation domain SMAL454_RS14125 PF03120 NAD-dependent DNA ligase OB-fold domain SMAL454_RS14125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SMAL454_RS14125 PF12826 Helix-hairpin-helix motif SMAL454_RS14130 PF00155 Aminotransferase class I and II SMAL454_RS14135 PF04354 ZipA, C-terminal FtsZ-binding domain SMAL454_RS14140 PF02463 RecF/RecN/SMC N terminal domain SMAL454_RS14145 PF03948 Ribosomal protein L9, C-terminal domain SMAL454_RS14145 PF01281 Ribosomal protein L9, N-terminal domain SMAL454_RS14150 PF01084 Ribosomal protein S18 SMAL454_RS14155 PF01250 Ribosomal protein S6 SMAL454_RS14160 PF03691 Uncharacterised protein family (UPF0167) SMAL454_RS14165 PF01521 Iron-sulphur cluster biosynthesis SMAL454_RS14170 PF01336 OB-fold nucleic acid binding domain SMAL454_RS14170 PF00152 tRNA synthetases class II (D, K and N) SMAL454_RS14190 PF00484 Carbonic anhydrase SMAL454_RS14195 PF06052 3-hydroxyanthranilic acid dioxygenase SMAL454_RS14200 PF00266 Aminotransferase class-V SMAL454_RS14205 PF01494 FAD binding domain SMAL454_RS14210 PF00929 Exonuclease SMAL454_RS14210 PF08411 Exonuclease C-terminal SMAL454_RS14230 PF01513 ATP-NAD kinase SMAL454_RS14240 PF05088 Bacterial NAD-glutamate dehydrogenase SMAL454_RS14250 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS14250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS14255 PF00873 AcrB/AcrD/AcrF family SMAL454_RS14270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS14270 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS14270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS14275 PF01209 ubiE/COQ5 methyltransferase family SMAL454_RS14280 PF02574 Homocysteine S-methyltransferase SMAL454_RS14280 PF02310 B12 binding domain SMAL454_RS14280 PF02607 B12 binding domain SMAL454_RS14280 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMAL454_RS14280 PF00809 Pterin binding enzyme SMAL454_RS14285 PF02310 B12 binding domain SMAL454_RS14285 PF02574 Homocysteine S-methyltransferase SMAL454_RS14285 PF02607 B12 binding domain SMAL454_RS14285 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMAL454_RS14285 PF00809 Pterin binding enzyme SMAL454_RS14300 PF04102 SlyX SMAL454_RS14305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMAL454_RS14305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMAL454_RS14305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMAL454_RS14310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMAL454_RS14310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMAL454_RS14315 PF00255 Glutathione peroxidase SMAL454_RS14325 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS14330 PF00005 ABC transporter SMAL454_RS14355 PF10415 Fumarase C C-terminus SMAL454_RS14355 PF00206 Lyase SMAL454_RS14360 PF00206 Lyase SMAL454_RS14360 PF08328 Adenylosuccinate lyase C-terminal SMAL454_RS14375 PF02779 Transketolase, pyrimidine binding domain SMAL454_RS14375 PF16870 2-oxoglutarate dehydrogenase C-terminal SMAL454_RS14375 PF16078 2-oxoglutarate dehydrogenase N-terminus SMAL454_RS14375 PF00676 Dehydrogenase E1 component SMAL454_RS14380 PF00364 Biotin-requiring enzyme SMAL454_RS14380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMAL454_RS14380 PF02817 e3 binding domain SMAL454_RS14385 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS14385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMAL454_RS14400 PF16655 PhoD-like phosphatase, N-terminal domain SMAL454_RS14400 PF09423 PhoD-like phosphatase SMAL454_RS14410 PF00772 DnaB-like helicase N terminal domain SMAL454_RS14410 PF03796 DnaB-like helicase C terminal domain SMAL454_RS14415 PF03358 NADPH-dependent FMN reductase SMAL454_RS14420 PF13537 Glutamine amidotransferase domain SMAL454_RS14420 PF00733 Asparagine synthase SMAL454_RS14425 PF02780 Transketolase, C-terminal domain SMAL454_RS14425 PF02779 Transketolase, pyrimidine binding domain SMAL454_RS14425 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMAL454_RS14430 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS14450 PF01026 TatD related DNase SMAL454_RS14455 PF00899 ThiF family SMAL454_RS14460 PF01322 Cytochrome C' SMAL454_RS14480 PF02253 Phospholipase A1 SMAL454_RS14485 PF03960 ArsC family SMAL454_RS14490 PF13417 Glutathione S-transferase, N-terminal domain SMAL454_RS14490 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS14500 PF05681 Fumarate hydratase (Fumerase) SMAL454_RS14500 PF05683 Fumarase C-terminus SMAL454_RS14505 PF12680 SnoaL-like domain SMAL454_RS14505 PF08281 Sigma-70, region 4 SMAL454_RS14505 PF04542 Sigma-70 region 2 SMAL454_RS14510 PF02627 Carboxymuconolactone decarboxylase family SMAL454_RS14515 PF00005 ABC transporter SMAL454_RS14520 PF00970 Oxidoreductase FAD-binding domain SMAL454_RS14520 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS14525 PF00255 Glutathione peroxidase SMAL454_RS14530 PF01432 Peptidase family M3 SMAL454_RS14560 PF01694 Rhomboid family SMAL454_RS14565 PF00854 POT family SMAL454_RS14575 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMAL454_RS14575 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMAL454_RS14580 PF00545 ribonuclease SMAL454_RS14595 PF01106 NifU-like domain SMAL454_RS14600 PF01329 Pterin 4 alpha carbinolamine dehydratase SMAL454_RS14610 PF02535 ZIP Zinc transporter SMAL454_RS14615 PF00849 RNA pseudouridylate synthase SMAL454_RS14615 PF01479 S4 domain SMAL454_RS14620 PF10150 Ribonuclease E/G family SMAL454_RS14620 PF00575 S1 RNA binding domain SMAL454_RS14620 PF12111 Polyribonucleotide phosphorylase C terminal SMAL454_RS14635 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS14640 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS14645 PF01547 Bacterial extracellular solute-binding protein SMAL454_RS14660 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS14665 PF01722 BolA-like protein SMAL454_RS14670 PF03795 YCII-related domain SMAL454_RS14675 PF02616 Segregation and condensation protein ScpA SMAL454_RS14680 PF04079 Segregation and condensation complex subunit ScpB SMAL454_RS14685 PF00849 RNA pseudouridylate synthase SMAL454_RS14685 PF01479 S4 domain SMAL454_RS14695 PF07690 Major Facilitator Superfamily SMAL454_RS14710 PF00795 Carbon-nitrogen hydrolase SMAL454_RS14715 PF00155 Aminotransferase class I and II SMAL454_RS14720 PF00005 ABC transporter SMAL454_RS14725 PF03379 CcmB protein SMAL454_RS14730 PF01578 Cytochrome C assembly protein SMAL454_RS14740 PF03100 CcmE SMAL454_RS14745 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SMAL454_RS14745 PF01578 Cytochrome C assembly protein SMAL454_RS14750 PF08534 Redoxin SMAL454_RS14755 PF03918 Cytochrome C biogenesis protein SMAL454_RS14765 PF00561 alpha/beta hydrolase fold SMAL454_RS14775 PF00664 ABC transporter transmembrane region SMAL454_RS14775 PF00005 ABC transporter SMAL454_RS14780 PF00664 ABC transporter transmembrane region SMAL454_RS14780 PF00005 ABC transporter SMAL454_RS14785 PF01654 Cytochrome bd terminal oxidase subunit I SMAL454_RS14790 PF02322 Cytochrome bd terminal oxidase subunit II SMAL454_RS14820 PF01522 Polysaccharide deacetylase SMAL454_RS14820 PF14883 Hypothetical glycosyl hydrolase family 13 SMAL454_RS14825 PF00535 Glycosyl transferase family 2 SMAL454_RS14835 PF00171 Aldehyde dehydrogenase family SMAL454_RS14840 PF01472 PUA domain SMAL454_RS14840 PF00696 Amino acid kinase family SMAL454_RS14850 PF00206 Lyase SMAL454_RS14855 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMAL454_RS14865 PF00696 Amino acid kinase family SMAL454_RS14865 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase SMAL454_RS14870 PF07687 Peptidase dimerisation domain SMAL454_RS14870 PF01546 Peptidase family M20/M25/M40 SMAL454_RS14875 PF00764 Arginosuccinate synthase SMAL454_RS14880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMAL454_RS14880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMAL454_RS14890 PF09190 DALR domain SMAL454_RS14890 PF01406 tRNA synthetases class I (C) catalytic domain SMAL454_RS14895 PF02657 Fe-S metabolism associated domain SMAL454_RS14905 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMAL454_RS14910 PF01809 Putative membrane protein insertion efficiency factor SMAL454_RS14915 PF01979 Amidohydrolase family SMAL454_RS14920 PF01551 Peptidase family M23 SMAL454_RS14920 PF08460 Bacterial SH3 domain SMAL454_RS14930 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS14940 PF01979 Amidohydrolase family SMAL454_RS14945 PF01132 Elongation factor P (EF-P) OB domain SMAL454_RS14945 PF08207 Elongation factor P (EF-P) KOW-like domain SMAL454_RS14945 PF09285 Elongation factor P, C-terminal SMAL454_RS14950 PF04055 Radical SAM superfamily SMAL454_RS14965 PF00588 SpoU rRNA Methylase family SMAL454_RS14970 PF00459 Inositol monophosphatase family SMAL454_RS14975 PF01435 Peptidase family M48 SMAL454_RS14980 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMAL454_RS14985 PF00106 short chain dehydrogenase SMAL454_RS14990 PF07879 PHB/PHA accumulation regulator DNA-binding domain SMAL454_RS14990 PF05233 PHB accumulation regulatory domain SMAL454_RS15005 PF01119 DNA mismatch repair protein, C-terminal domain SMAL454_RS15005 PF08676 MutL C terminal dimerisation domain SMAL454_RS15010 PF01520 N-acetylmuramoyl-L-alanine amidase SMAL454_RS15015 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMAL454_RS15020 PF01256 Carbohydrate kinase SMAL454_RS15020 PF03853 YjeF-related protein N-terminus SMAL454_RS15025 PF08331 Domain of unknown function (DUF1730) SMAL454_RS15030 PF02601 Exonuclease VII, large subunit SMAL454_RS15030 PF13742 OB-fold nucleic acid binding domain SMAL454_RS15045 PF03781 Sulfatase-modifying factor enzyme 1 SMAL454_RS15050 PF01612 3'-5' exonuclease SMAL454_RS15050 PF00570 HRDC domain SMAL454_RS15065 PF00593 TonB dependent receptor SMAL454_RS15065 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS15090 PF02805 Metal binding domain of Ada SMAL454_RS15090 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMAL454_RS15090 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMAL454_RS15090 PF12833 Helix-turn-helix domain SMAL454_RS15095 PF16884 N-terminal domain of oxidoreductase SMAL454_RS15095 PF00107 Zinc-binding dehydrogenase SMAL454_RS15120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS15120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS15120 PF12806 Acetyl-CoA dehydrogenase C-terminal like SMAL454_RS15120 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS15130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMAL454_RS15130 PF02780 Transketolase, C-terminal domain SMAL454_RS15130 PF02779 Transketolase, pyrimidine binding domain SMAL454_RS15160 PF17932 Tetracyclin repressor-like, C-terminal domain SMAL454_RS15160 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS15165 PF00893 Small Multidrug Resistance protein SMAL454_RS15170 PF07043 Protein of unknown function (DUF1328) SMAL454_RS15175 PF01810 LysE type translocator SMAL454_RS15180 PF01177 Asp/Glu/Hydantoin racemase SMAL454_RS15215 PF00216 Bacterial DNA-binding protein SMAL454_RS15220 PF03483 B3/4 domain SMAL454_RS15220 PF03147 Ferredoxin-fold anticodon binding domain SMAL454_RS15220 PF03484 tRNA synthetase B5 domain SMAL454_RS15220 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SMAL454_RS15220 PF01588 Putative tRNA binding domain SMAL454_RS15225 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SMAL454_RS15225 PF01409 tRNA synthetases class II core domain (F) SMAL454_RS15230 PF00453 Ribosomal protein L20 SMAL454_RS15235 PF01632 Ribosomal protein L35 SMAL454_RS15240 PF00707 Translation initiation factor IF-3, C-terminal domain SMAL454_RS15240 PF05198 Translation initiation factor IF-3, N-terminal domain SMAL454_RS15245 PF03129 Anticodon binding domain SMAL454_RS15245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMAL454_RS15245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMAL454_RS15245 PF02824 TGS domain SMAL454_RS15265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMAL454_RS15270 PF00041 Fibronectin type III domain SMAL454_RS15270 PF00704 Glycosyl hydrolases family 18 SMAL454_RS15275 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SMAL454_RS15275 PF00013 KH domain SMAL454_RS15275 PF01138 3' exoribonuclease family, domain 1 SMAL454_RS15275 PF03725 3' exoribonuclease family, domain 2 SMAL454_RS15275 PF00575 S1 RNA binding domain SMAL454_RS15280 PF00312 Ribosomal protein S15 SMAL454_RS15285 PF09157 Pseudouridine synthase II TruB, C-terminal SMAL454_RS15285 PF16198 tRNA pseudouridylate synthase B C-terminal domain SMAL454_RS15285 PF01509 TruB family pseudouridylate synthase (N terminal domain) SMAL454_RS15290 PF02033 Ribosome-binding factor A SMAL454_RS15295 PF11987 Translation-initiation factor 2 SMAL454_RS15295 PF04760 Translation initiation factor IF-2, N-terminal region SMAL454_RS15295 PF08364 Bacterial translation initiation factor IF-2 associated region SMAL454_RS15295 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS15300 PF13184 NusA-like KH domain SMAL454_RS15300 PF08529 NusA N-terminal domain SMAL454_RS15300 PF00575 S1 RNA binding domain SMAL454_RS15305 PF02576 RimP N-terminal domain SMAL454_RS15305 PF17384 RimP C-terminal SH3 domain SMAL454_RS15320 PF00361 Proton-conducting membrane transporter SMAL454_RS15325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SMAL454_RS15325 PF00361 Proton-conducting membrane transporter SMAL454_RS15330 PF00361 Proton-conducting membrane transporter SMAL454_RS15330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMAL454_RS15335 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMAL454_RS15340 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMAL454_RS15345 PF12838 4Fe-4S dicluster domain SMAL454_RS15350 PF00146 NADH dehydrogenase SMAL454_RS15355 PF00384 Molybdopterin oxidoreductase SMAL454_RS15355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMAL454_RS15355 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal SMAL454_RS15360 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMAL454_RS15360 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMAL454_RS15360 PF10531 SLBB domain SMAL454_RS15370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMAL454_RS15375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMAL454_RS15380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMAL454_RS15385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMAL454_RS15400 PF00121 Triosephosphate isomerase SMAL454_RS15410 PF11893 Domain of unknown function (DUF3413) SMAL454_RS15410 PF00884 Sulfatase SMAL454_RS15415 PF13439 Glycosyltransferase Family 4 SMAL454_RS15415 PF00534 Glycosyl transferases group 1 SMAL454_RS15420 PF01522 Polysaccharide deacetylase SMAL454_RS15425 PF16363 GDP-mannose 4,6 dehydratase SMAL454_RS15430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMAL454_RS15430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMAL454_RS15430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMAL454_RS15430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMAL454_RS15435 PF17848 Acetyl-coA carboxylase zinc finger domain SMAL454_RS15435 PF01039 Carboxyl transferase domain SMAL454_RS15440 PF00290 Tryptophan synthase alpha chain SMAL454_RS15450 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS15455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS15455 PF03466 LysR substrate binding domain SMAL454_RS15470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SMAL454_RS15475 PF01416 tRNA pseudouridine synthase SMAL454_RS15490 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMAL454_RS15490 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMAL454_RS15495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMAL454_RS15495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMAL454_RS15500 PF01264 Chorismate synthase SMAL454_RS15505 PF05175 Methyltransferase small domain SMAL454_RS15510 PF02630 SCO1/SenC SMAL454_RS15515 PF02666 Phosphatidylserine decarboxylase SMAL454_RS15530 PF05872 Bacterial protein of unknown function (DUF853) SMAL454_RS15535 PF01272 Transcription elongation factor, GreA/GreB, C-term SMAL454_RS15535 PF03449 Transcription elongation factor, N-terminal SMAL454_RS15545 PF04055 Radical SAM superfamily SMAL454_RS15545 PF18693 TRAM domain SMAL454_RS15545 PF00919 Uncharacterized protein family UPF0004 SMAL454_RS15550 PF01738 Dienelactone hydrolase family SMAL454_RS15565 PF00692 dUTPase SMAL454_RS15570 PF10609 NUBPL iron-transfer P-loop NTPase SMAL454_RS15575 PF00593 TonB dependent receptor SMAL454_RS15575 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS15585 PF05649 Peptidase family M13 SMAL454_RS15585 PF01431 Peptidase family M13 SMAL454_RS15590 PF00593 TonB dependent receptor SMAL454_RS15620 PF00892 EamA-like transporter family SMAL454_RS15625 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS15625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMAL454_RS15630 PF01266 FAD dependent oxidoreductase SMAL454_RS15635 PF04235 Protein of unknown function (DUF418) SMAL454_RS15640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMAL454_RS15645 PF00877 NlpC/P60 family SMAL454_RS15650 PF00877 NlpC/P60 family SMAL454_RS15655 PF00375 Sodium:dicarboxylate symporter family SMAL454_RS15670 PF09179 TilS substrate binding domain SMAL454_RS15670 PF01171 PP-loop family SMAL454_RS15670 PF11734 TilS substrate C-terminal domain SMAL454_RS15675 PF02609 Exonuclease VII small subunit SMAL454_RS15680 PF00348 Polyprenyl synthetase SMAL454_RS15690 PF01523 Putative modulator of DNA gyrase SMAL454_RS15695 PF04751 Protein of unknown function (DUF615) SMAL454_RS15700 PF01523 Putative modulator of DNA gyrase SMAL454_RS15710 PF10150 Ribonuclease E/G family SMAL454_RS15710 PF00575 S1 RNA binding domain SMAL454_RS15715 PF02545 Maf-like protein SMAL454_RS15720 PF04402 Protein of unknown function (DUF541) SMAL454_RS15730 PF00593 TonB dependent receptor SMAL454_RS15730 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS15735 PF13520 Amino acid permease SMAL454_RS15745 PF02590 Predicted SPOUT methyltransferase SMAL454_RS15755 PF01467 Cytidylyltransferase-like SMAL454_RS15770 PF13603 Leucyl-tRNA synthetase, Domain 2 SMAL454_RS15770 PF08264 Anticodon-binding domain of tRNA SMAL454_RS15770 PF00133 tRNA synthetases class I (I, L, M and V) SMAL454_RS15780 PF00085 Thioredoxin SMAL454_RS15790 PF00563 EAL domain SMAL454_RS15790 PF01590 GAF domain SMAL454_RS15790 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS15790 PF00360 Phytochrome region SMAL454_RS15810 PF02592 Putative vitamin uptake transporter SMAL454_RS15820 PF00144 Beta-lactamase SMAL454_RS15820 PF11954 Domain of unknown function (DUF3471) SMAL454_RS15825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMAL454_RS15835 PF09334 tRNA synthetases class I (M) SMAL454_RS15835 PF01588 Putative tRNA binding domain SMAL454_RS15845 PF04060 Putative Fe-S cluster SMAL454_RS15850 PF01042 Endoribonuclease L-PSP SMAL454_RS15855 PF09924 Uncharacterised conserved protein (DUF2156) SMAL454_RS15855 PF03706 Lysylphosphatidylglycerol synthase TM region SMAL454_RS15885 PF03831 PhnA domain SMAL454_RS15885 PF08274 PhnA Zinc-Ribbon SMAL454_RS15890 PF00012 Hsp70 protein SMAL454_RS15915 PF04542 Sigma-70 region 2 SMAL454_RS15915 PF08281 Sigma-70, region 4 SMAL454_RS15935 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMAL454_RS15940 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SMAL454_RS15945 PF01863 Protein of unknown function DUF45 SMAL454_RS15955 PF13091 PLD-like domain SMAL454_RS15965 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMAL454_RS15965 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMAL454_RS15970 PF03797 Autotransporter beta-domain SMAL454_RS15970 PF00082 Subtilase family SMAL454_RS15975 PF02803 Thiolase, C-terminal domain SMAL454_RS15975 PF00108 Thiolase, N-terminal domain SMAL454_RS15990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS15990 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS15990 PF18158 Adaptive response protein AidB N-terminal domain SMAL454_RS16000 PF04679 ATP dependent DNA ligase C terminal region SMAL454_RS16000 PF01068 ATP dependent DNA ligase domain SMAL454_RS16000 PF04675 DNA ligase N terminus SMAL454_RS16005 PF00271 Helicase conserved C-terminal domain SMAL454_RS16005 PF00270 DEAD/DEAH box helicase SMAL454_RS16005 PF08494 DEAD/H associated SMAL454_RS16020 PF01494 FAD binding domain SMAL454_RS16025 PF00313 'Cold-shock' DNA-binding domain SMAL454_RS16030 PF01048 Phosphorylase superfamily SMAL454_RS16035 PF00156 Phosphoribosyl transferase domain SMAL454_RS16040 PF00933 Glycosyl hydrolase family 3 N terminal domain SMAL454_RS16045 PF01323 DSBA-like thioredoxin domain SMAL454_RS16050 PF01928 CYTH domain SMAL454_RS16055 PF05958 tRNA (Uracil-5-)-methyltransferase SMAL454_RS16060 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS16060 PF00072 Response regulator receiver domain SMAL454_RS16065 PF11967 Recombination protein O N terminal SMAL454_RS16065 PF02565 Recombination protein O C terminal SMAL454_RS16070 PF07650 KH domain SMAL454_RS16070 PF01926 50S ribosome-binding GTPase SMAL454_RS16075 PF14622 Ribonuclease-III-like SMAL454_RS16075 PF00035 Double-stranded RNA binding motif SMAL454_RS16085 PF10502 Signal peptidase, peptidase S26 SMAL454_RS16090 PF00679 Elongation factor G C-terminus SMAL454_RS16090 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS16090 PF03144 Elongation factor Tu domain 2 SMAL454_RS16090 PF06421 GTP-binding protein LepA C-terminus SMAL454_RS16095 PF13180 PDZ domain SMAL454_RS16105 PF08281 Sigma-70, region 4 SMAL454_RS16105 PF04542 Sigma-70 region 2 SMAL454_RS16110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMAL454_RS16110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMAL454_RS16110 PF00378 Enoyl-CoA hydratase/isomerase SMAL454_RS16115 PF02678 Pirin SMAL454_RS16115 PF05726 Pirin C-terminal cupin domain SMAL454_RS16120 PF00230 Major intrinsic protein SMAL454_RS16130 PF02678 Pirin SMAL454_RS16130 PF05726 Pirin C-terminal cupin domain SMAL454_RS16135 PF02554 Carbon starvation protein CstA SMAL454_RS16135 PF13722 5TM C-terminal transporter carbon starvation CstA SMAL454_RS16140 PF04328 Selenoprotein, putative SMAL454_RS16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS16155 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS16155 PF00672 HAMP domain SMAL454_RS16160 PF00072 Response regulator receiver domain SMAL454_RS16160 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS16175 PF08019 Phosphoethanolamine transferase EptA/EptB SMAL454_RS16175 PF00884 Sulfatase SMAL454_RS16195 PF07690 Major Facilitator Superfamily SMAL454_RS16200 PF02347 Glycine cleavage system P-protein SMAL454_RS16210 PF00324 Amino acid permease SMAL454_RS16215 PF12833 Helix-turn-helix domain SMAL454_RS16215 PF02311 AraC-like ligand binding domain SMAL454_RS16220 PF18011 C-terminal domain found in long catalases SMAL454_RS16220 PF06628 Catalase-related immune-responsive SMAL454_RS16220 PF00199 Catalase SMAL454_RS16245 PF00672 HAMP domain SMAL454_RS16245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS16245 PF02203 Tar ligand binding domain homologue SMAL454_RS16250 PF01476 LysM domain SMAL454_RS16250 PF03734 L,D-transpeptidase catalytic domain SMAL454_RS16255 PF01551 Peptidase family M23 SMAL454_RS16255 PF04225 Opacity-associated protein A LysM-like domain SMAL454_RS16265 PF00709 Adenylosuccinate synthetase SMAL454_RS16275 PF01145 SPFH domain / Band 7 family SMAL454_RS16280 PF12221 Bacterial membrane protein N terminal SMAL454_RS16280 PF01145 SPFH domain / Band 7 family SMAL454_RS16285 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS16285 PF00107 Zinc-binding dehydrogenase SMAL454_RS16290 PF00072 Response regulator receiver domain SMAL454_RS16295 PF01556 DnaJ C terminal domain SMAL454_RS16295 PF00226 DnaJ domain SMAL454_RS16300 PF08534 Redoxin SMAL454_RS16310 PF06832 Penicillin-Binding Protein C-terminus Family SMAL454_RS16310 PF00905 Penicillin binding protein transpeptidase domain SMAL454_RS16310 PF00912 Transglycosylase SMAL454_RS16315 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SMAL454_RS16315 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SMAL454_RS16315 PF17962 Bacterial macroglobulin domain 6 SMAL454_RS16315 PF01835 MG2 domain SMAL454_RS16315 PF00207 Alpha-2-macroglobulin family SMAL454_RS16315 PF07703 Alpha-2-macroglobulin bait region domain SMAL454_RS16315 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SMAL454_RS16315 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SMAL454_RS16320 PF03972 MmgE/PrpD family SMAL454_RS16325 PF04303 PrpF protein SMAL454_RS16335 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMAL454_RS16340 PF00694 Aconitase C-terminal domain SMAL454_RS16340 PF00330 Aconitase family (aconitate hydratase) SMAL454_RS16345 PF00285 Citrate synthase, C-terminal domain SMAL454_RS16355 PF00158 Sigma-54 interaction domain SMAL454_RS16355 PF06506 Propionate catabolism activator SMAL454_RS16355 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS16375 PF00583 Acetyltransferase (GNAT) family SMAL454_RS16380 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SMAL454_RS16380 PF01243 Pyridoxamine 5'-phosphate oxidase SMAL454_RS16395 PF01202 Shikimate kinase SMAL454_RS16400 PF01761 3-dehydroquinate synthase SMAL454_RS16410 PF01208 Uroporphyrinogen decarboxylase (URO-D) SMAL454_RS16415 PF07690 Major Facilitator Superfamily SMAL454_RS16425 PF00072 Response regulator receiver domain SMAL454_RS16425 PF00989 PAS fold SMAL454_RS16425 PF01627 Hpt domain SMAL454_RS16425 PF18415 Histidine kinase receptor ArcB trans-membrane domain SMAL454_RS16425 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS16425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS16430 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS16430 PF17149 Periplasmic sensor domain found in signal transduction proteins SMAL454_RS16430 PF00672 HAMP domain SMAL454_RS16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS16430 PF00072 Response regulator receiver domain SMAL454_RS16430 PF01627 Hpt domain SMAL454_RS16440 PF01292 Prokaryotic cytochrome b561 SMAL454_RS16455 PF03313 Serine dehydratase alpha chain SMAL454_RS16455 PF03315 Serine dehydratase beta chain SMAL454_RS16460 PF12697 Alpha/beta hydrolase family SMAL454_RS16465 PF03447 Homoserine dehydrogenase, NAD binding domain SMAL454_RS16465 PF00742 Homoserine dehydrogenase SMAL454_RS16465 PF00696 Amino acid kinase family SMAL454_RS16470 PF01053 Cys/Met metabolism PLP-dependent enzyme SMAL454_RS16475 PF00561 alpha/beta hydrolase fold SMAL454_RS16480 PF01551 Peptidase family M23 SMAL454_RS16480 PF08525 Opacity-associated protein A N-terminal motif SMAL454_RS16480 PF01476 LysM domain SMAL454_RS16485 PF16658 Class II release factor RF3, C-terminal domain SMAL454_RS16485 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS16490 PF03006 Haemolysin-III related SMAL454_RS16505 PF00535 Glycosyl transferase family 2 SMAL454_RS16510 PF00912 Transglycosylase SMAL454_RS16515 PF01430 Hsp33 protein SMAL454_RS16525 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS16525 PF00593 TonB dependent receptor SMAL454_RS16530 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS16540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMAL454_RS16540 PF02770 Acyl-CoA dehydrogenase, middle domain SMAL454_RS16540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMAL454_RS16540 PF09317 Domain of unknown function (DUF1974) SMAL454_RS16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS16570 PF03466 LysR substrate binding domain SMAL454_RS16580 PF01597 Glycine cleavage H-protein SMAL454_RS16585 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMAL454_RS16585 PF01571 Aminomethyltransferase folate-binding domain SMAL454_RS16595 PF01145 SPFH domain / Band 7 family SMAL454_RS16595 PF16200 C-terminal region of band_7 SMAL454_RS16605 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SMAL454_RS16610 PF03819 MazG nucleotide pyrophosphohydrolase domain SMAL454_RS16615 PF00459 Inositol monophosphatase family SMAL454_RS16620 PF00293 NUDIX domain SMAL454_RS16625 PF00202 Aminotransferase class-III SMAL454_RS16630 PF04452 RNA methyltransferase SMAL454_RS16645 PF01584 CheW-like domain SMAL454_RS16645 PF02895 Signal transducing histidine kinase, homodimeric domain SMAL454_RS16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS16645 PF00072 Response regulator receiver domain SMAL454_RS16645 PF01627 Hpt domain SMAL454_RS16650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS16650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SMAL454_RS16655 PF01584 CheW-like domain SMAL454_RS16660 PF00072 Response regulator receiver domain SMAL454_RS16665 PF00072 Response regulator receiver domain SMAL454_RS16670 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SMAL454_RS16670 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SMAL454_RS16680 PF00814 Glycoprotease family SMAL454_RS16685 PF04851 Type III restriction enzyme, res subunit SMAL454_RS16685 PF13307 Helicase C-terminal domain SMAL454_RS16700 PF00905 Penicillin binding protein transpeptidase domain SMAL454_RS16700 PF14814 Bifunctional transglycosylase second domain SMAL454_RS16700 PF00912 Transglycosylase SMAL454_RS16720 PF13291 ACT domain SMAL454_RS16720 PF04607 Region found in RelA / SpoT proteins SMAL454_RS16720 PF02824 TGS domain SMAL454_RS16730 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SMAL454_RS16730 PF00271 Helicase conserved C-terminal domain SMAL454_RS16730 PF00270 DEAD/DEAH box helicase SMAL454_RS16730 PF11898 Domain of unknown function (DUF3418) SMAL454_RS16730 PF04408 Helicase associated domain (HA2) SMAL454_RS16735 PF00210 Ferritin-like domain SMAL454_RS16740 PF00270 DEAD/DEAH box helicase SMAL454_RS16740 PF00271 Helicase conserved C-terminal domain SMAL454_RS16740 PF00570 HRDC domain SMAL454_RS16740 PF16124 RecQ zinc-binding SMAL454_RS16740 PF09382 RQC domain SMAL454_RS16750 PF07731 Multicopper oxidase SMAL454_RS16750 PF07732 Multicopper oxidase SMAL454_RS16750 PF00394 Multicopper oxidase SMAL454_RS16755 PF05275 Copper resistance protein B precursor (CopB) SMAL454_RS16805 PF06508 Queuosine biosynthesis protein QueC SMAL454_RS16810 PF04055 Radical SAM superfamily SMAL454_RS16820 PF00691 OmpA family SMAL454_RS16825 PF07676 WD40-like Beta Propeller Repeat SMAL454_RS16825 PF04052 TolB amino-terminal domain SMAL454_RS16835 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS16840 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS16845 PF03061 Thioesterase superfamily SMAL454_RS16850 PF17864 RuvB AAA lid domain SMAL454_RS16850 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMAL454_RS16850 PF05491 RuvB C-terminal winged helix domain SMAL454_RS16855 PF02705 K+ potassium transporter SMAL454_RS16860 PF07499 RuvA, C-terminal domain SMAL454_RS16860 PF01330 RuvA N terminal domain SMAL454_RS16865 PF02075 Crossover junction endodeoxyribonuclease RuvC SMAL454_RS16870 PF01709 Transcriptional regulator SMAL454_RS16890 PF02938 GAD domain SMAL454_RS16890 PF00152 tRNA synthetases class II (D, K and N) SMAL454_RS16890 PF01336 OB-fold nucleic acid binding domain SMAL454_RS16915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS16915 PF03466 LysR substrate binding domain SMAL454_RS16920 PF00005 ABC transporter SMAL454_RS16920 PF12848 ABC transporter SMAL454_RS16930 PF00999 Sodium/hydrogen exchanger family SMAL454_RS16930 PF02254 TrkA-N domain SMAL454_RS16935 PF01053 Cys/Met metabolism PLP-dependent enzyme SMAL454_RS16940 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS16940 PF00072 Response regulator receiver domain SMAL454_RS16945 PF16527 Two-component sensor protein CpxA, periplasmic domain SMAL454_RS16945 PF00672 HAMP domain SMAL454_RS16945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS16945 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS16955 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS16955 PF17871 AAA lid domain SMAL454_RS16955 PF02861 Clp amino terminal domain, pathogenicity island component SMAL454_RS16955 PF10431 C-terminal, D2-small domain, of ClpB protein SMAL454_RS16955 PF07724 AAA domain (Cdc48 subfamily) SMAL454_RS16975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMAL454_RS16975 PF00205 Thiamine pyrophosphate enzyme, central domain SMAL454_RS16975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMAL454_RS16990 PF00593 TonB dependent receptor SMAL454_RS16990 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS16995 PF02358 Trehalose-phosphatase SMAL454_RS17000 PF00723 Glycosyl hydrolases family 15 SMAL454_RS17005 PF00982 Glycosyltransferase family 20 SMAL454_RS17010 PF04134 Protein of unknown function, DUF393 SMAL454_RS17020 PF02578 Multi-copper polyphenol oxidoreductase laccase SMAL454_RS17025 PF00849 RNA pseudouridylate synthase SMAL454_RS17030 PF13525 Outer membrane lipoprotein SMAL454_RS17040 PF00795 Carbon-nitrogen hydrolase SMAL454_RS17040 PF02540 NAD synthase SMAL454_RS17045 PF02629 CoA binding domain SMAL454_RS17045 PF00549 CoA-ligase SMAL454_RS17050 PF00549 CoA-ligase SMAL454_RS17050 PF08442 ATP-grasp domain SMAL454_RS17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS17055 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS17060 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS17060 PF00072 Response regulator receiver domain SMAL454_RS17060 PF00158 Sigma-54 interaction domain SMAL454_RS17065 PF00437 Type II/IV secretion system protein SMAL454_RS17065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMAL454_RS17070 PF00114 Pilin (bacterial filament) SMAL454_RS17070 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS17080 PF00482 Type II secretion system (T2SS), protein F SMAL454_RS17085 PF06750 Bacterial Peptidase A24 N-terminal domain SMAL454_RS17085 PF01478 Type IV leader peptidase family SMAL454_RS17090 PF01121 Dephospho-CoA kinase SMAL454_RS17100 PF11808 Phosphate regulon sensor protein PhoR SMAL454_RS17100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS17100 PF00989 PAS fold SMAL454_RS17100 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS17105 PF00072 Response regulator receiver domain SMAL454_RS17105 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS17120 PF08443 RimK-like ATP-grasp domain SMAL454_RS17120 PF18030 RimK PreATP-grasp domain SMAL454_RS17145 PF00657 GDSL-like Lipase/Acylhydrolase SMAL454_RS17145 PF03797 Autotransporter beta-domain SMAL454_RS17155 PF05690 Thiazole biosynthesis protein ThiG SMAL454_RS17160 PF02390 Putative methyltransferase SMAL454_RS17165 PF02080 TrkA-C domain SMAL454_RS17165 PF03600 Citrate transporter SMAL454_RS17180 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMAL454_RS17185 PF01741 Large-conductance mechanosensitive channel, MscL SMAL454_RS17195 PF00588 SpoU rRNA Methylase family SMAL454_RS17195 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMAL454_RS17200 PF01235 Sodium:alanine symporter family SMAL454_RS17210 PF00873 AcrB/AcrD/AcrF family SMAL454_RS17215 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS17215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS17230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS17230 PF03466 LysR substrate binding domain SMAL454_RS17235 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS17240 PF01661 Macro domain SMAL454_RS17250 PF00274 Fructose-bisphosphate aldolase class-I SMAL454_RS17255 PF02887 Pyruvate kinase, alpha/beta domain SMAL454_RS17255 PF00224 Pyruvate kinase, barrel domain SMAL454_RS17260 PF13419 Haloacid dehalogenase-like hydrolase SMAL454_RS17265 PF00162 Phosphoglycerate kinase SMAL454_RS17280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SMAL454_RS17280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SMAL454_RS17285 PF03922 OmpW family SMAL454_RS17295 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS17310 PF03965 Penicillinase repressor SMAL454_RS17325 PF00456 Transketolase, thiamine diphosphate binding domain SMAL454_RS17325 PF02780 Transketolase, C-terminal domain SMAL454_RS17325 PF02779 Transketolase, pyrimidine binding domain SMAL454_RS17330 PF00375 Sodium:dicarboxylate symporter family SMAL454_RS17340 PF07584 Aerotolerance regulator N-terminal SMAL454_RS17340 PF13519 von Willebrand factor type A domain SMAL454_RS17360 PF17863 AAA lid domain SMAL454_RS17360 PF07726 ATPase family associated with various cellular activities (AAA) SMAL454_RS17365 PF11741 AMIN domain SMAL454_RS17365 PF00263 Bacterial type II and III secretion system protein SMAL454_RS17365 PF03958 Bacterial type II/III secretion system short domain SMAL454_RS17365 PF07660 Secretin and TonB N terminus short domain SMAL454_RS17370 PF04351 Pilus assembly protein, PilP SMAL454_RS17375 PF04350 Pilus assembly protein, PilO SMAL454_RS17385 PF11104 Type IV pilus assembly protein PilM; SMAL454_RS17390 PF00905 Penicillin binding protein transpeptidase domain SMAL454_RS17390 PF17092 Penicillin-binding protein OB-like domain SMAL454_RS17390 PF00912 Transglycosylase SMAL454_RS17405 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS17405 PF03895 YadA-like membrane anchor domain SMAL454_RS17405 PF05658 Head domain of trimeric autotransporter adhesin SMAL454_RS17405 PF05662 Coiled stalk of trimeric autotransporter adhesin SMAL454_RS17420 PF15976 CS1-pili formation C-terminal SMAL454_RS17420 PF16967 E-set like domain SMAL454_RS17420 PF17271 TcfC Usher-like barrel domain SMAL454_RS17435 PF00285 Citrate synthase, C-terminal domain SMAL454_RS17440 PF01197 Ribosomal protein L31 SMAL454_RS17445 PF01156 Inosine-uridine preferring nucleoside hydrolase SMAL454_RS17450 PF00270 DEAD/DEAH box helicase SMAL454_RS17450 PF00271 Helicase conserved C-terminal domain SMAL454_RS17450 PF17191 RecG wedge domain SMAL454_RS17455 PF01042 Endoribonuclease L-PSP SMAL454_RS17460 PF02824 TGS domain SMAL454_RS17460 PF04607 Region found in RelA / SpoT proteins SMAL454_RS17460 PF13291 ACT domain SMAL454_RS17465 PF01192 RNA polymerase Rpb6 SMAL454_RS17470 PF00625 Guanylate kinase SMAL454_RS17480 PF13247 4Fe-4S dicluster domain SMAL454_RS17480 PF12800 4Fe-4S binding domain SMAL454_RS17480 PF09163 Formate dehydrogenase N, transmembrane SMAL454_RS17485 PF01292 Prokaryotic cytochrome b561 SMAL454_RS17490 PF04216 Protein involved in formate dehydrogenase formation SMAL454_RS17495 PF12390 Selenocysteine synthase N terminal SMAL454_RS17495 PF03841 L-seryl-tRNA selenium transferase SMAL454_RS17500 PF09107 Elongation factor SelB, winged helix SMAL454_RS17500 PF03144 Elongation factor Tu domain 2 SMAL454_RS17500 PF00009 Elongation factor Tu GTP binding domain SMAL454_RS17500 PF09106 Elongation factor SelB, winged helix SMAL454_RS17510 PF00586 AIR synthase related protein, N-terminal domain SMAL454_RS17510 PF02769 AIR synthase related protein, C-terminal domain SMAL454_RS17515 PF08340 Domain of unknown function (DUF1732) SMAL454_RS17515 PF03755 YicC-like family, N-terminal region SMAL454_RS17520 PF01138 3' exoribonuclease family, domain 1 SMAL454_RS17520 PF03725 3' exoribonuclease family, domain 2 SMAL454_RS17525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMAL454_RS17530 PF01725 Ham1 family SMAL454_RS17535 PF06969 HemN C-terminal domain SMAL454_RS17535 PF04055 Radical SAM superfamily SMAL454_RS17550 PF00557 Metallopeptidase family M24 SMAL454_RS17555 PF00557 Metallopeptidase family M24 SMAL454_RS17555 PF05195 Aminopeptidase P, N-terminal domain SMAL454_RS17560 PF03695 Uncharacterised protein family (UPF0149) SMAL454_RS17570 PF05164 Cell division protein ZapA SMAL454_RS17580 PF01812 5-formyltetrahydrofolate cyclo-ligase family SMAL454_RS17590 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SMAL454_RS17600 PF13369 Transglutaminase-like superfamily SMAL454_RS17605 PF00301 Rubredoxin SMAL454_RS17610 PF02581 Thiamine monophosphate synthase SMAL454_RS17615 PF00202 Aminotransferase class-III SMAL454_RS17620 PF00127 Copper binding proteins, plastocyanin/azurin family SMAL454_RS17630 PF00202 Aminotransferase class-III SMAL454_RS17635 PF00027 Cyclic nucleotide-binding domain SMAL454_RS17635 PF00520 Ion transport protein SMAL454_RS17640 PF12889 Protein of unknown function (DUF3829) SMAL454_RS17665 PF01569 PAP2 superfamily SMAL454_RS17675 PF02875 Mur ligase family, glutamate ligase domain SMAL454_RS17675 PF01225 Mur ligase family, catalytic domain SMAL454_RS17675 PF08245 Mur ligase middle domain SMAL454_RS17685 PF00365 Phosphofructokinase SMAL454_RS17700 PF03030 Inorganic H+ pyrophosphatase SMAL454_RS17705 PF03544 Gram-negative bacterial TonB protein C-terminal SMAL454_RS17710 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS17715 PF01618 MotA/TolQ/ExbB proton channel family SMAL454_RS17720 PF04304 Protein of unknown function (DUF454) SMAL454_RS17725 PF01126 Heme oxygenase SMAL454_RS17735 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS17735 PF00593 TonB dependent receptor SMAL454_RS17755 PF00719 Inorganic pyrophosphatase SMAL454_RS17770 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS17770 PF00593 TonB dependent receptor SMAL454_RS17775 PF12833 Helix-turn-helix domain SMAL454_RS17775 PF01965 DJ-1/PfpI family SMAL454_RS17780 PF00072 Response regulator receiver domain SMAL454_RS17780 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS17790 PF13667 ThiC-associated domain SMAL454_RS17790 PF01964 Radical SAM ThiC family SMAL454_RS17795 PF02028 BCCT, betaine/carnitine/choline family transporter SMAL454_RS17805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SMAL454_RS17805 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SMAL454_RS17810 PF00205 Thiamine pyrophosphate enzyme, central domain SMAL454_RS17810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMAL454_RS17810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMAL454_RS17820 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS17825 PF00682 HMGL-like SMAL454_RS17825 PF08502 LeuA allosteric (dimerisation) domain SMAL454_RS17835 PF00330 Aconitase family (aconitate hydratase) SMAL454_RS17840 PF00694 Aconitase C-terminal domain SMAL454_RS17845 PF00180 Isocitrate/isopropylmalate dehydrogenase SMAL454_RS17855 PF03466 LysR substrate binding domain SMAL454_RS17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS17860 PF00873 AcrB/AcrD/AcrF family SMAL454_RS17865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS17880 PF02321 Outer membrane efflux protein SMAL454_RS17885 PF13520 Amino acid permease SMAL454_RS17890 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SMAL454_RS17895 PF03279 Bacterial lipid A biosynthesis acyltransferase SMAL454_RS17930 PF00390 Malic enzyme, N-terminal domain SMAL454_RS17930 PF03949 Malic enzyme, NAD binding domain SMAL454_RS17930 PF01515 Phosphate acetyl/butaryl transferase SMAL454_RS17935 PF00375 Sodium:dicarboxylate symporter family SMAL454_RS17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS17945 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS17950 PF00072 Response regulator receiver domain SMAL454_RS17950 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS17965 PF08521 Two-component sensor kinase N-terminal SMAL454_RS17965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS17965 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS17970 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS17970 PF00072 Response regulator receiver domain SMAL454_RS17980 PF03600 Citrate transporter SMAL454_RS17985 PF00106 short chain dehydrogenase SMAL454_RS18010 PF03193 RsgA GTPase SMAL454_RS18015 PF00155 Aminotransferase class I and II SMAL454_RS18030 PF01522 Polysaccharide deacetylase SMAL454_RS18035 PF00462 Glutaredoxin SMAL454_RS18050 PF01979 Amidohydrolase family SMAL454_RS18055 PF00449 Urease alpha-subunit, N-terminal domain SMAL454_RS18055 PF01979 Amidohydrolase family SMAL454_RS18060 PF01323 DSBA-like thioredoxin domain SMAL454_RS18065 PF02645 Uncharacterised protein, DegV family COG1307 SMAL454_RS18080 PF02321 Outer membrane efflux protein SMAL454_RS18085 PF13533 Biotin-lipoyl like SMAL454_RS18095 PF03466 LysR substrate binding domain SMAL454_RS18095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS18110 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS18110 PF00360 Phytochrome region SMAL454_RS18110 PF01590 GAF domain SMAL454_RS18110 PF00563 EAL domain SMAL454_RS18115 PF00756 Putative esterase SMAL454_RS18125 PF00107 Zinc-binding dehydrogenase SMAL454_RS18125 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS18130 PF02583 Metal-sensitive transcriptional repressor SMAL454_RS18135 PF03466 LysR substrate binding domain SMAL454_RS18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS18140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMAL454_RS18165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS18165 PF03466 LysR substrate binding domain SMAL454_RS18170 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS18170 PF00107 Zinc-binding dehydrogenase SMAL454_RS18175 PF04107 Glutamate-cysteine ligase family 2(GCS2) SMAL454_RS18185 PF12833 Helix-turn-helix domain SMAL454_RS18185 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMAL454_RS18190 PF10996 Beta-Casp domain SMAL454_RS18190 PF00753 Metallo-beta-lactamase superfamily SMAL454_RS18190 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMAL454_RS18195 PF01926 50S ribosome-binding GTPase SMAL454_RS18200 PF00034 Cytochrome c SMAL454_RS18205 PF01323 DSBA-like thioredoxin domain SMAL454_RS18210 PF01323 DSBA-like thioredoxin domain SMAL454_RS18220 PF00892 EamA-like transporter family SMAL454_RS18225 PF01037 Lrp/AsnC ligand binding domain SMAL454_RS18235 PF00593 TonB dependent receptor SMAL454_RS18235 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS18245 PF00593 TonB dependent receptor SMAL454_RS18245 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS18255 PF02472 Biopolymer transport protein ExbD/TolR SMAL454_RS18260 PF01464 Transglycosylase SLT domain SMAL454_RS18260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SMAL454_RS18265 PF01966 HD domain SMAL454_RS18265 PF01743 Poly A polymerase head domain SMAL454_RS18265 PF12627 Probable RNA and SrmB- binding site of polymerase A SMAL454_RS18300 PF13018 Extended Signal Peptide of Type V secretion system SMAL454_RS18300 PF03797 Autotransporter beta-domain SMAL454_RS18300 PF16168 Adhesin of bacterial autotransporter system, probable stalk SMAL454_RS18310 PF01979 Amidohydrolase family SMAL454_RS18315 PF01380 SIS domain SMAL454_RS18320 PF00356 Bacterial regulatory proteins, lacI family SMAL454_RS18325 PF07690 Major Facilitator Superfamily SMAL454_RS18330 PF02685 Glucokinase SMAL454_RS18340 PF00728 Glycosyl hydrolase family 20, catalytic domain SMAL454_RS18340 PF02838 Glycosyl hydrolase family 20, domain 2 SMAL454_RS18340 PF07691 PA14 domain SMAL454_RS18360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMAL454_RS18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS18375 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS18380 PF00072 Response regulator receiver domain SMAL454_RS18385 PF00360 Phytochrome region SMAL454_RS18385 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS18385 PF08446 PAS fold SMAL454_RS18385 PF01590 GAF domain SMAL454_RS18390 PF04972 BON domain SMAL454_RS18395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMAL454_RS18395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMAL454_RS18400 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SMAL454_RS18400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMAL454_RS18415 PF11818 C-terminal domain of tail specific protease (DUF3340) SMAL454_RS18415 PF00595 PDZ domain SMAL454_RS18415 PF03572 Peptidase family S41 SMAL454_RS18415 PF17804 Tail specific protease N-terminal domain SMAL454_RS18420 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SMAL454_RS18420 PF04055 Radical SAM superfamily SMAL454_RS18425 PF03099 Biotin/lipoate A/B protein ligase family SMAL454_RS18430 PF04359 Protein of unknown function (DUF493) SMAL454_RS18445 PF07943 Penicillin-binding protein 5, C-terminal domain SMAL454_RS18445 PF00768 D-alanyl-D-alanine carboxypeptidase SMAL454_RS18450 PF03330 Lytic transglycolase SMAL454_RS18450 PF05036 Sporulation related domain SMAL454_RS18455 PF13406 Transglycosylase SLT domain SMAL454_RS18460 PF01098 Cell cycle protein SMAL454_RS18465 PF01098 Cell cycle protein SMAL454_RS18470 PF00905 Penicillin binding protein transpeptidase domain SMAL454_RS18470 PF03717 Penicillin-binding Protein dimerisation domain SMAL454_RS18480 PF04085 rod shape-determining protein MreC SMAL454_RS18490 PF00294 pfkB family carbohydrate kinase SMAL454_RS18505 PF11838 ERAP1-like C-terminal domain SMAL454_RS18505 PF01433 Peptidase family M1 domain SMAL454_RS18510 PF01209 ubiE/COQ5 methyltransferase family SMAL454_RS18535 PF02321 Outer membrane efflux protein SMAL454_RS18540 PF00873 AcrB/AcrD/AcrF family SMAL454_RS18545 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS18545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS18550 PF08361 MAATS-type transcriptional repressor, C-terminal region SMAL454_RS18550 PF00440 Bacterial regulatory proteins, tetR family SMAL454_RS18555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMAL454_RS18555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMAL454_RS18560 PF00004 ATPase family associated with various cellular activities (AAA) SMAL454_RS18560 PF10431 C-terminal, D2-small domain, of ClpB protein SMAL454_RS18560 PF07724 AAA domain (Cdc48 subfamily) SMAL454_RS18565 PF00227 Proteasome subunit SMAL454_RS18575 PF02899 Phage integrase, N-terminal SAM-like domain SMAL454_RS18575 PF00589 Phage integrase family SMAL454_RS18585 PF01678 Diaminopimelate epimerase SMAL454_RS18595 PF04304 Protein of unknown function (DUF454) SMAL454_RS18600 PF00326 Prolyl oligopeptidase family SMAL454_RS18600 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SMAL454_RS18605 PF00155 Aminotransferase class I and II SMAL454_RS18610 PF00326 Prolyl oligopeptidase family SMAL454_RS18610 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SMAL454_RS18625 PF00528 Binding-protein-dependent transport system inner membrane component SMAL454_RS18630 PF00005 ABC transporter SMAL454_RS18630 PF09383 NIL domain SMAL454_RS18635 PF00892 EamA-like transporter family SMAL454_RS18640 PF04461 Protein of unknown function (DUF520) SMAL454_RS18655 PF01432 Peptidase family M3 SMAL454_RS18665 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS18670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMAL454_RS18685 PF01380 SIS domain SMAL454_RS18690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS18695 PF00005 ABC transporter SMAL454_RS18700 PF00005 ABC transporter SMAL454_RS18700 PF02687 FtsX-like permease family SMAL454_RS18700 PF12704 MacB-like periplasmic core domain SMAL454_RS18705 PF02687 FtsX-like permease family SMAL454_RS18705 PF12704 MacB-like periplasmic core domain SMAL454_RS18715 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS18715 PF00072 Response regulator receiver domain SMAL454_RS18715 PF00158 Sigma-54 interaction domain SMAL454_RS18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS18720 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS18720 PF00989 PAS fold SMAL454_RS18730 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS18730 PF14602 Hexapeptide repeat of succinyl-transferase SMAL454_RS18730 PF12804 MobA-like NTP transferase domain SMAL454_RS18740 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SMAL454_RS18740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SMAL454_RS18745 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMAL454_RS18745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMAL454_RS18750 PF00231 ATP synthase SMAL454_RS18755 PF00306 ATP synthase alpha/beta chain, C terminal domain SMAL454_RS18755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMAL454_RS18755 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMAL454_RS18760 PF00213 ATP synthase delta (OSCP) subunit SMAL454_RS18765 PF00430 ATP synthase B/B' CF(0) SMAL454_RS18770 PF00137 ATP synthase subunit C SMAL454_RS18775 PF00119 ATP synthase A chain SMAL454_RS18790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMAL454_RS18790 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS18795 PF02817 e3 binding domain SMAL454_RS18795 PF00364 Biotin-requiring enzyme SMAL454_RS18795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMAL454_RS18810 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMAL454_RS18810 PF01266 FAD dependent oxidoreductase SMAL454_RS18815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMAL454_RS18815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMAL454_RS18820 PF03180 NLPA lipoprotein SMAL454_RS18840 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SMAL454_RS18840 PF03900 Porphobilinogen deaminase, C-terminal domain SMAL454_RS18845 PF00072 Response regulator receiver domain SMAL454_RS18845 PF04397 LytTr DNA-binding domain SMAL454_RS18850 PF06580 Histidine kinase SMAL454_RS18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS18855 PF02230 Phospholipase/Carboxylesterase SMAL454_RS18860 PF13632 Glycosyl transferase family group 2 SMAL454_RS18865 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS18865 PF00593 TonB dependent receptor SMAL454_RS18875 PF10947 Protein of unknown function (DUF2628) SMAL454_RS18900 PF07690 Major Facilitator Superfamily SMAL454_RS18920 PF03797 Autotransporter beta-domain SMAL454_RS18920 PF12951 Passenger-associated-transport-repeat SMAL454_RS18920 PF00082 Subtilase family SMAL454_RS18945 PF00593 TonB dependent receptor SMAL454_RS18945 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS18965 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS18980 PF07681 DoxX SMAL454_RS19000 PF04546 Sigma-70, non-essential region SMAL454_RS19000 PF03979 Sigma-70 factor, region 1.1 SMAL454_RS19000 PF00140 Sigma-70 factor, region 1.2 SMAL454_RS19000 PF04542 Sigma-70 region 2 SMAL454_RS19000 PF04539 Sigma-70 region 3 SMAL454_RS19000 PF04545 Sigma-70, region 4 SMAL454_RS19005 PF02580 D-Tyr-tRNA(Tyr) deacylase SMAL454_RS19015 PF00925 GTP cyclohydrolase II SMAL454_RS19035 PF00535 Glycosyl transferase family 2 SMAL454_RS19040 PF00534 Glycosyl transferases group 1 SMAL454_RS19040 PF13439 Glycosyltransferase Family 4 SMAL454_RS19055 PF01189 16S rRNA methyltransferase RsmB/F SMAL454_RS19055 PF01029 NusB family SMAL454_RS19060 PF02911 Formyl transferase, C-terminal domain SMAL454_RS19060 PF00551 Formyl transferase SMAL454_RS19065 PF01327 Polypeptide deformylase SMAL454_RS19075 PF02481 DNA recombination-mediator protein A SMAL454_RS19075 PF17782 DprA winged helix domain SMAL454_RS19080 PF04361 Protein of unknown function (DUF494) SMAL454_RS19085 PF07963 Prokaryotic N-terminal methylation motif SMAL454_RS19085 PF00114 Pilin (bacterial filament) SMAL454_RS19090 PF06271 RDD family SMAL454_RS19095 PF01131 DNA topoisomerase SMAL454_RS19095 PF01751 Toprim domain SMAL454_RS19095 PF13368 Topoisomerase C-terminal repeat SMAL454_RS19100 PF01300 Telomere recombination SMAL454_RS19125 PF01343 Peptidase family S49 SMAL454_RS19130 PF01554 MatE SMAL454_RS19145 PF17764 3′ DNA-binding domain (3′BD) SMAL454_RS19145 PF00270 DEAD/DEAH box helicase SMAL454_RS19145 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SMAL454_RS19145 PF18074 Primosomal protein N C-terminal domain SMAL454_RS19145 PF00271 Helicase conserved C-terminal domain SMAL454_RS19150 PF13417 Glutathione S-transferase, N-terminal domain SMAL454_RS19150 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS19160 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMAL454_RS19175 PF01541 GIY-YIG catalytic domain SMAL454_RS19180 PF03458 UPF0126 domain SMAL454_RS19185 PF00793 DAHP synthetase I family SMAL454_RS19205 PF01047 MarR family SMAL454_RS19210 PF00672 HAMP domain SMAL454_RS19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS19210 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS19215 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS19215 PF00072 Response regulator receiver domain SMAL454_RS19235 PF00118 TCP-1/cpn60 chaperonin family SMAL454_RS19240 PF00166 Chaperonin 10 Kd subunit SMAL454_RS19245 PF04231 Endonuclease I SMAL454_RS19250 PF03091 CutA1 divalent ion tolerance protein SMAL454_RS19255 PF11412 Disulphide bond corrector protein DsbC SMAL454_RS19255 PF02683 Cytochrome C biogenesis protein transmembrane region SMAL454_RS19260 PF08534 Redoxin SMAL454_RS19265 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS19265 PF00258 Flavodoxin SMAL454_RS19265 PF00667 FAD binding domain SMAL454_RS19270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS19270 PF02203 Tar ligand binding domain homologue SMAL454_RS19270 PF00672 HAMP domain SMAL454_RS19285 PF00072 Response regulator receiver domain SMAL454_RS19285 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS19290 PF07730 Histidine kinase SMAL454_RS19300 PF03055 Retinal pigment epithelial membrane protein SMAL454_RS19310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS19310 PF03466 LysR substrate binding domain SMAL454_RS19325 PF00245 Alkaline phosphatase SMAL454_RS19330 PF00768 D-alanyl-D-alanine carboxypeptidase SMAL454_RS19330 PF07943 Penicillin-binding protein 5, C-terminal domain SMAL454_RS19340 PF02525 Flavodoxin-like fold SMAL454_RS19360 PF01220 Dehydroquinase class II SMAL454_RS19365 PF00364 Biotin-requiring enzyme SMAL454_RS19370 PF00289 Biotin carboxylase, N-terminal domain SMAL454_RS19370 PF02785 Biotin carboxylase C-terminal domain SMAL454_RS19370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMAL454_RS19395 PF02954 Bacterial regulatory protein, Fis family SMAL454_RS19405 PF01553 Acyltransferase SMAL454_RS19415 PF00782 Dual specificity phosphatase, catalytic domain SMAL454_RS19420 PF12147 Putative methyltransferase SMAL454_RS19420 PF12146 Serine aminopeptidase, S33 SMAL454_RS19425 PF01066 CDP-alcohol phosphatidyltransferase SMAL454_RS19430 PF01808 AICARFT/IMPCHase bienzyme SMAL454_RS19430 PF02142 MGS-like domain SMAL454_RS19440 PF02844 Phosphoribosylglycinamide synthetase, N domain SMAL454_RS19440 PF02843 Phosphoribosylglycinamide synthetase, C domain SMAL454_RS19440 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SMAL454_RS19455 PF04545 Sigma-70, region 4 SMAL454_RS19455 PF04542 Sigma-70 region 2 SMAL454_RS19455 PF00140 Sigma-70 factor, region 1.2 SMAL454_RS19460 PF03167 Uracil DNA glycosylase superfamily SMAL454_RS19465 PF01339 CheB methylesterase SMAL454_RS19465 PF00072 Response regulator receiver domain SMAL454_RS19470 PF18075 FtsX extracellular domain SMAL454_RS19475 PF00005 ABC transporter SMAL454_RS19480 PF12300 ATP-dependent RNA helicase RhlB SMAL454_RS19480 PF00270 DEAD/DEAH box helicase SMAL454_RS19480 PF00271 Helicase conserved C-terminal domain SMAL454_RS19485 PF00085 Thioredoxin SMAL454_RS19490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMAL454_RS19490 PF07498 Rho termination factor, N-terminal domain SMAL454_RS19490 PF07497 Rho termination factor, RNA-binding domain SMAL454_RS19495 PF07694 5TMR of 5TMR-LYT SMAL454_RS19495 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS19505 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SMAL454_RS19530 PF03971 Monomeric isocitrate dehydrogenase SMAL454_RS19540 PF01476 LysM domain SMAL454_RS19540 PF04972 BON domain SMAL454_RS19545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SMAL454_RS19545 PF14489 QueF-like protein SMAL454_RS19550 PF07687 Peptidase dimerisation domain SMAL454_RS19550 PF01546 Peptidase family M20/M25/M40 SMAL454_RS19555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS19560 PF00873 AcrB/AcrD/AcrF family SMAL454_RS19565 PF00873 AcrB/AcrD/AcrF family SMAL454_RS19570 PF12805 FUSC-like inner membrane protein yccS SMAL454_RS19575 PF00106 short chain dehydrogenase SMAL454_RS19580 PF07690 Major Facilitator Superfamily SMAL454_RS19605 PF00293 NUDIX domain SMAL454_RS19605 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SMAL454_RS19605 PF09297 NADH pyrophosphatase zinc ribbon domain SMAL454_RS19610 PF01521 Iron-sulphur cluster biosynthesis SMAL454_RS19630 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS19630 PF00563 EAL domain SMAL454_RS19630 PF00072 Response regulator receiver domain SMAL454_RS19635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS19635 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS19635 PF01627 Hpt domain SMAL454_RS19635 PF00072 Response regulator receiver domain SMAL454_RS19635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMAL454_RS19635 PF00672 HAMP domain SMAL454_RS19640 PF00210 Ferritin-like domain SMAL454_RS19650 PF00293 NUDIX domain SMAL454_RS19665 PF00380 Ribosomal protein S9/S16 SMAL454_RS19670 PF00572 Ribosomal protein L13 SMAL454_RS19675 PF03232 Ubiquinone biosynthesis protein COQ7 SMAL454_RS19680 PF00893 Small Multidrug Resistance protein SMAL454_RS19685 PF02675 S-adenosylmethionine decarboxylase SMAL454_RS19690 PF00325 Bacterial regulatory proteins, crp family SMAL454_RS19690 PF00027 Cyclic nucleotide-binding domain SMAL454_RS19695 PF01925 Sulfite exporter TauE/SafE SMAL454_RS19705 PF00218 Indole-3-glycerol phosphate synthase SMAL454_RS19710 PF02885 Glycosyl transferase family, helical bundle domain SMAL454_RS19710 PF00591 Glycosyl transferase family, a/b domain SMAL454_RS19715 PF00117 Glutamine amidotransferase class-I SMAL454_RS19725 PF04715 Anthranilate synthase component I, N terminal region SMAL454_RS19725 PF00425 chorismate binding enzyme SMAL454_RS19730 PF00781 Diacylglycerol kinase catalytic domain SMAL454_RS19740 PF00834 Ribulose-phosphate 3 epimerase family SMAL454_RS19745 PF00226 DnaJ domain SMAL454_RS19745 PF05099 Tellurite resistance protein TerB SMAL454_RS19750 PF01259 SAICAR synthetase SMAL454_RS19760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMAL454_RS19760 PF00361 Proton-conducting membrane transporter SMAL454_RS19760 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SMAL454_RS19760 PF13244 Domain of unknown function (DUF4040) SMAL454_RS19765 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMAL454_RS19770 PF00361 Proton-conducting membrane transporter SMAL454_RS19775 PF01899 Na+/H+ ion antiporter subunit SMAL454_RS19780 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SMAL454_RS19785 PF03334 Na+/H+ antiporter subunit SMAL454_RS19790 PF01699 Sodium/calcium exchanger protein SMAL454_RS19805 PF04209 homogentisate 1,2-dioxygenase SMAL454_RS19810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMAL454_RS19815 PF01047 MarR family SMAL454_RS19820 PF17761 DUF1016 N-terminal domain SMAL454_RS19820 PF06250 YhcG PDDEXK nuclease domain SMAL454_RS19835 PF00854 POT family SMAL454_RS19840 PF03301 Tryptophan 2,3-dioxygenase SMAL454_RS19845 PF00676 Dehydrogenase E1 component SMAL454_RS19850 PF02780 Transketolase, C-terminal domain SMAL454_RS19850 PF02779 Transketolase, pyrimidine binding domain SMAL454_RS19860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMAL454_RS19860 PF02817 e3 binding domain SMAL454_RS19860 PF00364 Biotin-requiring enzyme SMAL454_RS19870 PF13280 WYL domain SMAL454_RS19870 PF08279 HTH domain SMAL454_RS19880 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS19885 PF05661 Protein of unknown function (DUF808) SMAL454_RS19890 PF03109 ABC1 family SMAL454_RS19895 PF00884 Sulfatase SMAL454_RS19900 PF00924 Mechanosensitive ion channel SMAL454_RS19900 PF12795 Mechanosensitive ion channel porin domain SMAL454_RS19900 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMAL454_RS19905 PF00665 Integrase core domain SMAL454_RS19920 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMAL454_RS19920 PF01266 FAD dependent oxidoreductase SMAL454_RS19940 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS19940 PF00072 Response regulator receiver domain SMAL454_RS19945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS19955 PF17810 Arginine decarboxylase helical bundle domain SMAL454_RS19955 PF17944 Arginine decarboxylase C-terminal helical extension SMAL454_RS19955 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMAL454_RS19960 PF17284 Spermidine synthase tetramerisation domain SMAL454_RS19975 PF00665 Integrase core domain SMAL454_RS19980 PF00543 Nitrogen regulatory protein P-II SMAL454_RS19985 PF04380 Membrane fusogenic activity SMAL454_RS20060 PF01078 Magnesium chelatase, subunit ChlI SMAL454_RS20060 PF13335 Magnesium chelatase, subunit ChlI C-terminal SMAL454_RS20085 PF06055 Exopolysaccharide synthesis, ExoD SMAL454_RS20090 PF07995 Glucose / Sorbosone dehydrogenase SMAL454_RS20105 PF01483 Proprotein convertase P-domain SMAL454_RS20105 PF00082 Subtilase family SMAL454_RS20115 PF02630 SCO1/SenC SMAL454_RS20120 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SMAL454_RS20125 PF00510 Cytochrome c oxidase subunit III SMAL454_RS20130 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMAL454_RS20135 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMAL454_RS20135 PF06481 COX Aromatic Rich Motif SMAL454_RS20140 PF00155 Aminotransferase class I and II SMAL454_RS20140 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS20155 PF00392 Bacterial regulatory proteins, gntR family SMAL454_RS20155 PF00155 Aminotransferase class I and II SMAL454_RS20160 PF00266 Aminotransferase class-V SMAL454_RS20215 PF02667 Short chain fatty acid transporter SMAL454_RS20220 PF01040 UbiA prenyltransferase family SMAL454_RS20265 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMAL454_RS20270 PF07715 TonB-dependent Receptor Plug Domain SMAL454_RS20270 PF00593 TonB dependent receptor SMAL454_RS20275 PF16338 Domain of unknown function (DUF4968) SMAL454_RS20275 PF17137 Domain of unknown function (DUF5110) SMAL454_RS20275 PF01055 Glycosyl hydrolases family 31 SMAL454_RS20280 PF01380 SIS domain SMAL454_RS20285 PF00480 ROK family SMAL454_RS20290 PF08013 Tagatose 6 phosphate kinase SMAL454_RS20295 PF00455 DeoR C terminal sensor domain SMAL454_RS20295 PF08220 DeoR-like helix-turn-helix domain SMAL454_RS20300 PF01979 Amidohydrolase family SMAL454_RS20305 PF00083 Sugar (and other) transporter SMAL454_RS20320 PF12106 Colicin E5 ribonuclease domain SMAL454_RS20320 PF13332 Hemagglutinin repeat SMAL454_RS20330 PF13332 Hemagglutinin repeat SMAL454_RS20330 PF05860 haemagglutination activity domain SMAL454_RS20330 PF04829 Pre-toxin domain with VENN motif SMAL454_RS20335 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SMAL454_RS20335 PF17287 POTRA domain SMAL454_RS20335 PF08479 POTRA domain, ShlB-type SMAL454_RS20340 PF00156 Phosphoribosyl transferase domain SMAL454_RS20350 PF00654 Voltage gated chloride channel SMAL454_RS20355 PF04055 Radical SAM superfamily SMAL454_RS20355 PF06968 Biotin and Thiamin Synthesis associated domain SMAL454_RS20360 PF00155 Aminotransferase class I and II SMAL454_RS20365 PF12697 Alpha/beta hydrolase family SMAL454_RS20375 PF13649 Methyltransferase domain SMAL454_RS20385 PF00291 Pyridoxal-phosphate dependent enzyme SMAL454_RS20395 PF01134 Glucose inhibited division protein A SMAL454_RS20395 PF13932 GidA associated domain SMAL454_RS20400 PF02321 Outer membrane efflux protein SMAL454_RS20405 PF00873 AcrB/AcrD/AcrF family SMAL454_RS20410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS20410 PF00529 HlyD membrane-fusion protein of T1SS SMAL454_RS20415 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS20415 PF00672 HAMP domain SMAL454_RS20415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS20420 PF00072 Response regulator receiver domain SMAL454_RS20420 PF00486 Transcriptional regulatory protein, C terminal SMAL454_RS20425 PF10127 RNA repair pathway DNA polymerase beta family SMAL454_RS20430 PF00132 Bacterial transferase hexapeptide (six repeats) SMAL454_RS20455 PF17863 AAA lid domain SMAL454_RS20455 PF07726 ATPase family associated with various cellular activities (AAA) SMAL454_RS20470 PF03738 Glutathionylspermidine synthase preATP-grasp SMAL454_RS20480 PF00920 Dehydratase family SMAL454_RS20485 PF13307 Helicase C-terminal domain SMAL454_RS20485 PF06733 DEAD_2 SMAL454_RS20495 PF08501 Shikimate dehydrogenase substrate binding domain SMAL454_RS20495 PF01488 Shikimate / quinate 5-dehydrogenase SMAL454_RS20495 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SMAL454_RS20510 PF00490 Delta-aminolevulinic acid dehydratase SMAL454_RS20515 PF01062 Bestrophin, RFP-TM, chloride channel SMAL454_RS20540 PF00326 Prolyl oligopeptidase family SMAL454_RS20540 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMAL454_RS20545 PF02798 Glutathione S-transferase, N-terminal domain SMAL454_RS20545 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS20550 PF03350 Uncharacterized protein family, UPF0114 SMAL454_RS20565 PF02311 AraC-like ligand binding domain SMAL454_RS20565 PF12833 Helix-turn-helix domain SMAL454_RS20580 PF00005 ABC transporter SMAL454_RS20585 PF00561 alpha/beta hydrolase fold SMAL454_RS20600 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading SMAL454_RS20600 PF18416 N-acetylglucosamine binding protein domain 2 SMAL454_RS20605 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading SMAL454_RS20605 PF18416 N-acetylglucosamine binding protein domain 2 SMAL454_RS20610 PF00970 Oxidoreductase FAD-binding domain SMAL454_RS20610 PF00111 2Fe-2S iron-sulfur cluster binding domain SMAL454_RS20610 PF00175 Oxidoreductase NAD-binding domain SMAL454_RS20615 PF00005 ABC transporter SMAL454_RS20620 PF01061 ABC-2 type transporter SMAL454_RS20630 PF02558 Ketopantoate reductase PanE/ApbA SMAL454_RS20630 PF08546 Ketopantoate reductase PanE/ApbA C terminal SMAL454_RS20640 PF01026 TatD related DNase SMAL454_RS20645 PF08482 ATP-dependent helicase C-terminal SMAL454_RS20645 PF00270 DEAD/DEAH box helicase SMAL454_RS20645 PF04408 Helicase associated domain (HA2) SMAL454_RS20645 PF00271 Helicase conserved C-terminal domain SMAL454_RS20655 PF00849 RNA pseudouridylate synthase SMAL454_RS20670 PF00248 Aldo/keto reductase family SMAL454_RS20685 PF01139 tRNA-splicing ligase RtcB SMAL454_RS20700 PF00672 HAMP domain SMAL454_RS20700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS20700 PF02203 Tar ligand binding domain homologue SMAL454_RS20705 PF03466 LysR substrate binding domain SMAL454_RS20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS20710 PF07690 Major Facilitator Superfamily SMAL454_RS20715 PF00248 Aldo/keto reductase family SMAL454_RS20720 PF00561 alpha/beta hydrolase fold SMAL454_RS20725 PF01906 Putative heavy-metal-binding SMAL454_RS20730 PF13607 Succinyl-CoA ligase like flavodoxin domain SMAL454_RS20730 PF13380 CoA binding domain SMAL454_RS20730 PF00583 Acetyltransferase (GNAT) family SMAL454_RS20735 PF03448 MgtE intracellular N domain SMAL454_RS20735 PF01769 Divalent cation transporter SMAL454_RS20735 PF00571 CBS domain SMAL454_RS20740 PF00999 Sodium/hydrogen exchanger family SMAL454_RS20740 PF02254 TrkA-N domain SMAL454_RS20745 PF02661 Fic/DOC family SMAL454_RS20745 PF12796 Ankyrin repeats (3 copies) SMAL454_RS20750 PF05166 YcgL domain SMAL454_RS20760 PF02801 Beta-ketoacyl synthase, C-terminal domain SMAL454_RS20760 PF00109 Beta-ketoacyl synthase, N-terminal domain SMAL454_RS20775 PF02801 Beta-ketoacyl synthase, C-terminal domain SMAL454_RS20775 PF00109 Beta-ketoacyl synthase, N-terminal domain SMAL454_RS20785 PF01494 FAD binding domain SMAL454_RS20805 PF00221 Aromatic amino acid lyase SMAL454_RS20815 PF00535 Glycosyl transferase family 2 SMAL454_RS20830 PF00550 Phosphopantetheine attachment site SMAL454_RS20835 PF00550 Phosphopantetheine attachment site SMAL454_RS20850 PF02322 Cytochrome bd terminal oxidase subunit II SMAL454_RS20855 PF01654 Cytochrome bd terminal oxidase subunit I SMAL454_RS20865 PF05593 RHS Repeat SMAL454_RS20865 PF03527 RHS protein SMAL454_RS20880 PF04542 Sigma-70 region 2 SMAL454_RS20880 PF08281 Sigma-70, region 4 SMAL454_RS20900 PF00293 NUDIX domain SMAL454_RS20920 PF01218 Coproporphyrinogen III oxidase SMAL454_RS20930 PF04239 Protein of unknown function (DUF421) SMAL454_RS20935 PF01367 5'-3' exonuclease, C-terminal SAM fold SMAL454_RS20935 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMAL454_RS20935 PF00476 DNA polymerase family A SMAL454_RS20935 PF01612 3'-5' exonuclease SMAL454_RS20945 PF00582 Universal stress protein family SMAL454_RS20970 PF00580 UvrD/REP helicase N-terminal domain SMAL454_RS20970 PF13361 UvrD-like helicase C-terminal domain SMAL454_RS20980 PF13091 PLD-like domain SMAL454_RS20980 PF13396 Phospholipase_D-nuclease N-terminal SMAL454_RS20985 PF00471 Ribosomal protein L33 SMAL454_RS20990 PF00830 Ribosomal L28 family SMAL454_RS20995 PF03033 Glycosyltransferase family 28 N-terminal domain SMAL454_RS21000 PF00929 Exonuclease SMAL454_RS21005 PF03466 LysR substrate binding domain SMAL454_RS21005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS21010 PF01042 Endoribonuclease L-PSP SMAL454_RS21020 PF02321 Outer membrane efflux protein SMAL454_RS21025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMAL454_RS21030 PF00873 AcrB/AcrD/AcrF family SMAL454_RS21045 PF00535 Glycosyl transferase family 2 SMAL454_RS21050 PF01370 NAD dependent epimerase/dehydratase family SMAL454_RS21060 PF02195 ParB-like nuclease domain SMAL454_RS21060 PF17762 HTH domain found in ParB protein SMAL454_RS21065 PF13614 AAA domain SMAL454_RS21070 PF02527 rRNA small subunit methyltransferase G SMAL454_RS21075 PF01648 4'-phosphopantetheinyl transferase superfamily SMAL454_RS21080 PF04226 Transglycosylase associated protein SMAL454_RS21090 PF00171 Aldehyde dehydrogenase family SMAL454_RS21095 PF08946 Osmosensory transporter coiled coil SMAL454_RS21095 PF00083 Sugar (and other) transporter SMAL454_RS21105 PF13193 AMP-binding enzyme C-terminal domain SMAL454_RS21105 PF00501 AMP-binding enzyme SMAL454_RS21105 PF16177 Acetyl-coenzyme A synthetase N-terminus SMAL454_RS21110 PF00196 Bacterial regulatory proteins, luxR family SMAL454_RS21110 PF00072 Response regulator receiver domain SMAL454_RS21115 PF02659 Putative manganese efflux pump SMAL454_RS21120 PF00512 His Kinase A (phospho-acceptor) domain SMAL454_RS21120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMAL454_RS21120 PF00072 Response regulator receiver domain SMAL454_RS21120 PF09456 RcsC Alpha-Beta-Loop (ABL) SMAL454_RS21125 PF10459 Peptidase S46 SMAL454_RS21130 PF00012 Hsp70 protein SMAL454_RS21140 PF04357 TamB, inner membrane protein subunit of TAM complex SMAL454_RS21145 PF17243 POTRA domain TamA domain 1 SMAL454_RS21145 PF07244 Surface antigen variable number repeat SMAL454_RS21145 PF01103 Surface antigen SMAL454_RS21150 PF02092 Glycyl-tRNA synthetase beta subunit SMAL454_RS21150 PF05746 DALR anticodon binding domain SMAL454_RS21155 PF02091 Glycyl-tRNA synthetase alpha subunit SMAL454_RS21160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMAL454_RS21160 PF00437 Type II/IV secretion system protein SMAL454_RS21165 PF00958 GMP synthase C terminal domain SMAL454_RS21165 PF00117 Glutamine amidotransferase class-I SMAL454_RS21175 PF00902 Sec-independent protein translocase protein (TatC) SMAL454_RS21180 PF02416 mttA/Hcf106 family SMAL454_RS21185 PF02416 mttA/Hcf106 family SMAL454_RS21195 PF00762 Ferrochelatase SMAL454_RS21200 PF12697 Alpha/beta hydrolase family SMAL454_RS21205 PF00672 HAMP domain SMAL454_RS21205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMAL454_RS21205 PF02203 Tar ligand binding domain homologue SMAL454_RS21235 PF03594 Benzoate membrane transport protein SMAL454_RS21245 PF01263 Aldose 1-epimerase SMAL454_RS21250 PF13406 Transglycosylase SLT domain SMAL454_RS21255 PF10017 Histidine-specific methyltransferase, SAM-dependent SMAL454_RS21260 PF03781 Sulfatase-modifying factor enzyme 1 SMAL454_RS21260 PF12867 DinB superfamily SMAL454_RS21265 PF00990 Diguanylate cyclase, GGDEF domain SMAL454_RS21270 PF02810 SEC-C motif SMAL454_RS21275 PF01925 Sulfite exporter TauE/SafE SMAL454_RS21295 PF01227 GTP cyclohydrolase I SMAL454_RS21305 PF07869 Protein of unknown function (DUF1656) SMAL454_RS21310 PF13533 Biotin-lipoyl like SMAL454_RS21315 PF02321 Outer membrane efflux protein SMAL454_RS21320 PF04632 Fusaric acid resistance protein family SMAL454_RS21330 PF13538 UvrD-like helicase C-terminal domain SMAL454_RS21335 PF12705 PD-(D/E)XK nuclease superfamily SMAL454_RS21335 PF00580 UvrD/REP helicase N-terminal domain SMAL454_RS21335 PF13361 UvrD-like helicase C-terminal domain SMAL454_RS21340 PF17946 RecC C-terminal domain SMAL454_RS21345 PF00005 ABC transporter SMAL454_RS21350 PF02405 Permease MlaE SMAL454_RS21355 PF02470 MlaD protein SMAL454_RS21370 PF04333 MlaA lipoprotein SMAL454_RS21375 PF00255 Glutathione peroxidase SMAL454_RS21385 PF02646 RmuC family SMAL454_RS21390 PF13417 Glutathione S-transferase, N-terminal domain SMAL454_RS21390 PF00043 Glutathione S-transferase, C-terminal domain SMAL454_RS21395 PF00107 Zinc-binding dehydrogenase SMAL454_RS21395 PF08240 Alcohol dehydrogenase GroES-like domain SMAL454_RS21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMAL454_RS21400 PF03466 LysR substrate binding domain SMAL454_RS21405 PF01810 LysE type translocator SMAL454_RS21420 PF13520 Amino acid permease SMAL454_RS21430 PF10672 S-adenosylmethionine-dependent methyltransferase SMAL454_RS21430 PF17785 PUA-like domain SMAL454_RS21435 PF03741 Integral membrane protein TerC family SMAL454_RS21440 PF01694 Rhomboid family SMAL454_RS21445 PF03009 Glycerophosphoryl diester phosphodiesterase family SMAL454_RS21450 PF01926 50S ribosome-binding GTPase SMAL454_RS21450 PF12631 MnmE helical domain SMAL454_RS21450 PF10396 GTP-binding protein TrmE N-terminus SMAL454_RS21460 PF02096 60Kd inner membrane protein SMAL454_RS21460 PF14849 YidC periplasmic domain SMAL454_RS21465 PF00825 Ribonuclease P SMAL454_RS21470 PF00468 Ribosomal protein L34