locus-tag class description SMD_RS00115 PF11638 DnaA N-terminal domain SMD_RS00115 PF08299 Bacterial dnaA protein helix-turn-helix SMD_RS00115 PF00308 Bacterial dnaA protein SMD_RS00120 PF00712 DNA polymerase III beta subunit, N-terminal domain SMD_RS00120 PF02767 DNA polymerase III beta subunit, central domain SMD_RS00120 PF02768 DNA polymerase III beta subunit, C-terminal domain SMD_RS00125 PF02463 RecF/RecN/SMC N terminal domain SMD_RS00130 PF00986 DNA gyrase B subunit, carboxyl terminus SMD_RS00130 PF00204 DNA gyrase B SMD_RS00130 PF01751 Toprim domain SMD_RS00130 PF18053 DNA gyrase B subunit insert domain SMD_RS00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS00135 PF02517 CPBP intramembrane metalloprotease SMD_RS00140 PF01435 Peptidase family M48 SMD_RS00150 PF03544 Gram-negative bacterial TonB protein C-terminal SMD_RS00155 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS00160 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS00165 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS00170 PF13091 PLD-like domain SMD_RS00170 PF13396 Phospholipase_D-nuclease N-terminal SMD_RS00180 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SMD_RS00185 PF04055 Radical SAM superfamily SMD_RS00210 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SMD_RS00215 PF00155 Aminotransferase class I and II SMD_RS00220 PF00593 TonB dependent receptor SMD_RS00220 PF07715 TonB-dependent Receptor Plug Domain SMD_RS00235 PF02735 Ku70/Ku80 beta-barrel domain SMD_RS00240 PF13298 DNA polymerase Ligase (LigD) SMD_RS00240 PF01068 ATP dependent DNA ligase domain SMD_RS00240 PF04679 ATP dependent DNA ligase C terminal region SMD_RS00250 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS00250 PF00107 Zinc-binding dehydrogenase SMD_RS00255 PF01081 KDPG and KHG aldolase SMD_RS00265 PF00356 Bacterial regulatory proteins, lacI family SMD_RS00270 PF00351 Biopterin-dependent aromatic amino acid hydroxylase SMD_RS00275 PF01037 Lrp/AsnC ligand binding domain SMD_RS00280 PF01734 Patatin-like phospholipase SMD_RS00290 PF07715 TonB-dependent Receptor Plug Domain SMD_RS00290 PF00593 TonB dependent receptor SMD_RS00295 PF01569 PAP2 superfamily SMD_RS00310 PF00005 ABC transporter SMD_RS00330 PF06827 Zinc finger found in FPG and IleRS SMD_RS00330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SMD_RS00330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SMD_RS00335 PF04349 Periplasmic glucan biosynthesis protein, MdoG SMD_RS00340 PF00265 Thymidine kinase SMD_RS00355 PF00580 UvrD/REP helicase N-terminal domain SMD_RS00355 PF13361 UvrD-like helicase C-terminal domain SMD_RS00375 PF03527 RHS protein SMD_RS00390 PF04337 Protein of unknown function, DUF480 SMD_RS00395 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SMD_RS00400 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SMD_RS00405 PF00089 Trypsin SMD_RS00415 PF01553 Acyltransferase SMD_RS00425 PF01171 PP-loop family SMD_RS00430 PF04381 Putative exonuclease, RdgC SMD_RS00440 PF02142 MGS-like domain SMD_RS00450 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMD_RS00450 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS00455 PF01493 GXGXG motif SMD_RS00455 PF01645 Conserved region in glutamate synthase SMD_RS00455 PF04898 Glutamate synthase central domain SMD_RS00455 PF00310 Glutamine amidotransferases class-II SMD_RS00490 PF00144 Beta-lactamase SMD_RS00520 PF00271 Helicase conserved C-terminal domain SMD_RS00520 PF09369 Domain of unknown function (DUF1998) SMD_RS00520 PF00270 DEAD/DEAH box helicase SMD_RS00550 PF01882 Protein of unknown function DUF58 SMD_RS00555 PF07726 ATPase family associated with various cellular activities (AAA) SMD_RS00555 PF17863 AAA lid domain SMD_RS00575 PF01523 Putative modulator of DNA gyrase SMD_RS00595 PF01434 Peptidase family M41 SMD_RS00595 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS00595 PF17862 AAA+ lid domain SMD_RS00615 PF13091 PLD-like domain SMD_RS00620 PF03061 Thioesterase superfamily SMD_RS00625 PF01553 Acyltransferase SMD_RS00640 PF01161 Phosphatidylethanolamine-binding protein SMD_RS00645 PF03358 NADPH-dependent FMN reductase SMD_RS00655 PF02673 Bacitracin resistance protein BacA SMD_RS00660 PF00120 Glutamine synthetase, catalytic domain SMD_RS00660 PF03951 Glutamine synthetase, beta-Grasp domain SMD_RS00665 PF00543 Nitrogen regulatory protein P-II SMD_RS00670 PF00909 Ammonium Transporter Family SMD_RS00705 PF01695 IstB-like ATP binding protein SMD_RS00710 PF00665 Integrase core domain SMD_RS00720 PF00989 PAS fold SMD_RS00720 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS00720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS00725 PF00158 Sigma-54 interaction domain SMD_RS00725 PF00072 Response regulator receiver domain SMD_RS00725 PF02954 Bacterial regulatory protein, Fis family SMD_RS00730 PF00080 Copper/zinc superoxide dismutase (SODC) SMD_RS00735 PF00080 Copper/zinc superoxide dismutase (SODC) SMD_RS00745 PF02803 Thiolase, C-terminal domain SMD_RS00745 PF00108 Thiolase, N-terminal domain SMD_RS00780 PF02556 Preprotein translocase subunit SecB SMD_RS00785 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SMD_RS00785 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SMD_RS00805 PF01758 Sodium Bile acid symporter family SMD_RS00810 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMD_RS00820 PF03358 NADPH-dependent FMN reductase SMD_RS00850 PF13683 Integrase core domain SMD_RS00850 PF13276 HTH-like domain SMD_RS00855 PF01527 Transposase SMD_RS00875 PF13801 Heavy-metal resistance SMD_RS00880 PF04542 Sigma-70 region 2 SMD_RS00880 PF08281 Sigma-70, region 4 SMD_RS00885 PF02321 Outer membrane efflux protein SMD_RS00890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS00895 PF00873 AcrB/AcrD/AcrF family SMD_RS00925 PF02321 Outer membrane efflux protein SMD_RS00930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS00930 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS00935 PF00873 AcrB/AcrD/AcrF family SMD_RS00965 PF12833 Helix-turn-helix domain SMD_RS00975 PF04261 Dyp-type peroxidase family SMD_RS01020 PF00196 Bacterial regulatory proteins, luxR family SMD_RS01020 PF00072 Response regulator receiver domain SMD_RS01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS01025 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS01025 PF01627 Hpt domain SMD_RS01025 PF00989 PAS fold SMD_RS01025 PF00072 Response regulator receiver domain SMD_RS01025 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMD_RS01040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS01040 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS01040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS01050 PF00588 SpoU rRNA Methylase family SMD_RS01060 PF00675 Insulinase (Peptidase family M16) SMD_RS01060 PF05193 Peptidase M16 inactive domain SMD_RS01070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMD_RS01070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMD_RS01075 PF00561 alpha/beta hydrolase fold SMD_RS01085 PF00501 AMP-binding enzyme SMD_RS01090 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family SMD_RS01100 PF01820 D-ala D-ala ligase N-terminus SMD_RS01100 PF07478 D-ala D-ala ligase C-terminus SMD_RS01115 PF03109 ABC1 family SMD_RS01125 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS01130 PF00535 Glycosyl transferase family 2 SMD_RS01135 PF02585 GlcNAc-PI de-N-acetylase SMD_RS01140 PF01596 O-methyltransferase SMD_RS01145 PF00849 RNA pseudouridylate synthase SMD_RS01145 PF04287 tRNA pseudouridine synthase C SMD_RS01155 PF00472 RF-1 domain SMD_RS01165 PF01432 Peptidase family M3 SMD_RS01180 PF10502 Signal peptidase, peptidase S26 SMD_RS01185 PF07690 Major Facilitator Superfamily SMD_RS01190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS01190 PF03466 LysR substrate binding domain SMD_RS01195 PF03466 LysR substrate binding domain SMD_RS01195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS01200 PF01274 Malate synthase SMD_RS01205 PF00463 Isocitrate lyase family SMD_RS01210 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS01230 PF00289 Biotin carboxylase, N-terminal domain SMD_RS01230 PF00364 Biotin-requiring enzyme SMD_RS01230 PF02785 Biotin carboxylase C-terminal domain SMD_RS01230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMD_RS01235 PF01039 Carboxyl transferase domain SMD_RS01240 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS01240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS01240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS01270 PF03969 AFG1-like ATPase SMD_RS01280 PF03477 ATP cone domain SMD_RS01280 PF02867 Ribonucleotide reductase, barrel domain SMD_RS01280 PF00317 Ribonucleotide reductase, all-alpha domain SMD_RS01285 PF00268 Ribonucleotide reductase, small chain SMD_RS01290 PF01810 LysE type translocator SMD_RS01295 PF03061 Thioesterase superfamily SMD_RS01300 PF02146 Sir2 family SMD_RS01305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMD_RS01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS01310 PF03466 LysR substrate binding domain SMD_RS01315 PF00551 Formyl transferase SMD_RS01320 PF00857 Isochorismatase family SMD_RS01325 PF02677 Epoxyqueuosine reductase QueH SMD_RS01335 PF00293 NUDIX domain SMD_RS01335 PF01467 Cytidylyltransferase-like SMD_RS01340 PF01734 Patatin-like phospholipase SMD_RS01345 PF06114 IrrE N-terminal-like domain SMD_RS01345 PF09856 Predicted transcriptional regulator (DUF2083) SMD_RS01345 PF01381 Helix-turn-helix SMD_RS01350 PF00171 Aldehyde dehydrogenase family SMD_RS01355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS01355 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS01355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS01360 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS01365 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS01370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMD_RS01370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMD_RS01375 PF02566 OsmC-like protein SMD_RS01485 PF01740 STAS domain SMD_RS01485 PF00916 Sulfate permease family SMD_RS01505 PF01207 Dihydrouridine synthase (Dus) SMD_RS01515 PF00072 Response regulator receiver domain SMD_RS01515 PF00486 Transcriptional regulatory protein, C terminal SMD_RS01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS01525 PF06167 Glucose-regulated metallo-peptidase M90 SMD_RS01535 PF08279 HTH domain SMD_RS01535 PF03099 Biotin/lipoate A/B protein ligase family SMD_RS01535 PF02237 Biotin protein ligase C terminal domain SMD_RS01540 PF03309 Type III pantothenate kinase SMD_RS01560 PF13683 Integrase core domain SMD_RS01560 PF13276 HTH-like domain SMD_RS01565 PF01527 Transposase SMD_RS01600 PF00491 Arginase family SMD_RS01610 PF05532 CsbD-like SMD_RS01620 PF00579 tRNA synthetases class I (W and Y) SMD_RS01630 PF00753 Metallo-beta-lactamase superfamily SMD_RS01645 PF00083 Sugar (and other) transporter SMD_RS01650 PF00892 EamA-like transporter family SMD_RS01655 PF00892 EamA-like transporter family SMD_RS01660 PF07715 TonB-dependent Receptor Plug Domain SMD_RS01660 PF00593 TonB dependent receptor SMD_RS01670 PF12704 MacB-like periplasmic core domain SMD_RS01670 PF02687 FtsX-like permease family SMD_RS01670 PF00005 ABC transporter SMD_RS01680 PF00005 ABC transporter SMD_RS01685 PF13533 Biotin-lipoyl like SMD_RS01690 PF07730 Histidine kinase SMD_RS01690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS01695 PF00196 Bacterial regulatory proteins, luxR family SMD_RS01695 PF00072 Response regulator receiver domain SMD_RS01700 PF01292 Prokaryotic cytochrome b561 SMD_RS01710 PF00883 Cytosol aminopeptidase family, catalytic domain SMD_RS01710 PF02789 Cytosol aminopeptidase family, N-terminal domain SMD_RS01715 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS01725 PF01594 AI-2E family transporter SMD_RS01745 PF00595 PDZ domain SMD_RS01760 PF07237 Protein of unknown function (DUF1428) SMD_RS01765 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMD_RS01765 PF00326 Prolyl oligopeptidase family SMD_RS01790 PF07690 Major Facilitator Superfamily SMD_RS01795 PF03466 LysR substrate binding domain SMD_RS01795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS01800 PF07308 Protein of unknown function (DUF1456) SMD_RS01805 PF00106 short chain dehydrogenase SMD_RS01815 PF03485 Arginyl tRNA synthetase N terminal domain SMD_RS01815 PF05746 DALR anticodon binding domain SMD_RS01815 PF00750 tRNA synthetases class I (R) SMD_RS01820 PF04002 RadC-like JAB domain SMD_RS01825 PF00196 Bacterial regulatory proteins, luxR family SMD_RS01825 PF00072 Response regulator receiver domain SMD_RS01830 PF02441 Flavoprotein SMD_RS01830 PF04127 DNA / pantothenate metabolism flavoprotein SMD_RS01835 PF00692 dUTPase SMD_RS01840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMD_RS01840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMD_RS01840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMD_RS01840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMD_RS01850 PF00486 Transcriptional regulatory protein, C terminal SMD_RS01850 PF00072 Response regulator receiver domain SMD_RS01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS01855 PF13492 GAF domain SMD_RS01855 PF13493 Domain of unknown function (DUF4118) SMD_RS01855 PF02702 Osmosensitive K+ channel His kinase sensor domain SMD_RS01855 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS01860 PF02669 K+-transporting ATPase, c chain SMD_RS01870 PF03814 Potassium-transporting ATPase A subunit SMD_RS01885 PF00156 Phosphoribosyl transferase domain SMD_RS01890 PF03372 Endonuclease/Exonuclease/phosphatase family SMD_RS01895 PF07690 Major Facilitator Superfamily SMD_RS01905 PF03702 Anhydro-N-acetylmuramic acid kinase SMD_RS01910 PF04225 Opacity-associated protein A LysM-like domain SMD_RS01910 PF01551 Peptidase family M23 SMD_RS01915 PF00579 tRNA synthetases class I (W and Y) SMD_RS01975 PF04389 Peptidase family M28 SMD_RS01985 PF01551 Peptidase family M23 SMD_RS01990 PF03572 Peptidase family S41 SMD_RS01990 PF13180 PDZ domain SMD_RS02000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SMD_RS02005 PF04973 Nicotinamide mononucleotide transporter SMD_RS02015 PF00171 Aldehyde dehydrogenase family SMD_RS02015 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SMD_RS02015 PF01619 Proline dehydrogenase SMD_RS02015 PF14850 DNA-binding domain of Proline dehydrogenase SMD_RS02025 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMD_RS02025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMD_RS02030 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMD_RS02040 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 SMD_RS02045 PF00510 Cytochrome c oxidase subunit III SMD_RS02055 PF02104 SURF1 family SMD_RS02070 PF01040 UbiA prenyltransferase family SMD_RS02080 PF13593 SBF-like CPA transporter family (DUF4137) SMD_RS02090 PF08278 DNA primase DnaG DnaB-binding SMD_RS02090 PF10410 DnaB-helicase binding domain of primase SMD_RS02090 PF01807 CHC2 zinc finger SMD_RS02090 PF08275 DNA primase catalytic core, N-terminal domain SMD_RS02095 PF03631 Virulence factor BrkB SMD_RS02105 PF01165 Ribosomal protein S21 SMD_RS02110 PF00814 Glycoprotease family SMD_RS02120 PF02152 Dihydroneopterin aldolase SMD_RS02125 PF00924 Mechanosensitive ion channel SMD_RS02130 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMD_RS02130 PF14310 Fibronectin type III-like domain SMD_RS02130 PF00933 Glycosyl hydrolase family 3 N terminal domain SMD_RS02140 PF07995 Glucose / Sorbosone dehydrogenase SMD_RS02145 PF05360 yiaA/B two helix domain SMD_RS02155 PF13520 Amino acid permease SMD_RS02165 PF01380 SIS domain SMD_RS02165 PF01418 Helix-turn-helix domain, rpiR family SMD_RS02170 PF13378 Enolase C-terminal domain-like SMD_RS02170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMD_RS02185 PF00593 TonB dependent receptor SMD_RS02195 PF01427 D-ala-D-ala dipeptidase SMD_RS02220 PF07063 Domain of unknown function (DUF1338) SMD_RS02225 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SMD_RS02225 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SMD_RS02235 PF02592 Putative vitamin uptake transporter SMD_RS02265 PF00881 Nitroreductase family SMD_RS02270 PF04264 YceI-like domain SMD_RS02285 PF04954 Siderophore-interacting protein SMD_RS02285 PF08021 Siderophore-interacting FAD-binding domain SMD_RS02290 PF03551 Transcriptional regulator PadR-like family SMD_RS02295 PF00456 Transketolase, thiamine diphosphate binding domain SMD_RS02295 PF17831 Pyruvate dehydrogenase E1 component middle domain SMD_RS02380 PF00561 alpha/beta hydrolase fold SMD_RS02420 PF01545 Cation efflux family SMD_RS02420 PF16916 Dimerisation domain of Zinc Transporter SMD_RS02425 PF02583 Metal-sensitive transcriptional repressor SMD_RS02435 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMD_RS02435 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMD_RS02445 PF12848 ABC transporter SMD_RS02445 PF00005 ABC transporter SMD_RS02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS02450 PF03466 LysR substrate binding domain SMD_RS02455 PF00144 Beta-lactamase SMD_RS02460 PF07690 Major Facilitator Superfamily SMD_RS02465 PF12792 CSS motif domain associated with EAL SMD_RS02465 PF00563 EAL domain SMD_RS02470 PF00324 Amino acid permease SMD_RS02475 PF01464 Transglycosylase SLT domain SMD_RS02490 PF03795 YCII-related domain SMD_RS02500 PF06983 3-demethylubiquinone-9 3-methyltransferase SMD_RS02510 PF07237 Protein of unknown function (DUF1428) SMD_RS02515 PF08281 Sigma-70, region 4 SMD_RS02515 PF04542 Sigma-70 region 2 SMD_RS02545 PF06580 Histidine kinase SMD_RS02545 PF07694 5TMR of 5TMR-LYT SMD_RS02550 PF00072 Response regulator receiver domain SMD_RS02550 PF04397 LytTr DNA-binding domain SMD_RS02570 PF00440 Bacterial regulatory proteins, tetR family SMD_RS02580 PF07690 Major Facilitator Superfamily SMD_RS02585 PF05649 Peptidase family M13 SMD_RS02585 PF01431 Peptidase family M13 SMD_RS02590 PF08447 PAS fold SMD_RS02590 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS02590 PF08448 PAS fold SMD_RS02590 PF00563 EAL domain SMD_RS02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS02595 PF03466 LysR substrate binding domain SMD_RS02605 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SMD_RS02610 PF00999 Sodium/hydrogen exchanger family SMD_RS02635 PF00691 OmpA family SMD_RS02635 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMD_RS02640 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS02645 PF01641 SelR domain SMD_RS02660 PF01037 Lrp/AsnC ligand binding domain SMD_RS02665 PF01266 FAD dependent oxidoreductase SMD_RS02670 PF00842 Alanine racemase, C-terminal domain SMD_RS02670 PF01168 Alanine racemase, N-terminal domain SMD_RS02680 PF18698 Histidine kinase sensor domain SMD_RS02680 PF00989 PAS fold SMD_RS02680 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS02680 PF00672 HAMP domain SMD_RS02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS02695 PF08468 Methyltransferase small domain N-terminal SMD_RS02695 PF05175 Methyltransferase small domain SMD_RS02700 PF01479 S4 domain SMD_RS02700 PF00849 RNA pseudouridylate synthase SMD_RS02705 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS02710 PF02801 Beta-ketoacyl synthase, C-terminal domain SMD_RS02710 PF00109 Beta-ketoacyl synthase, N-terminal domain SMD_RS02715 PF07977 FabA-like domain SMD_RS02720 PF11798 IMS family HHH motif SMD_RS02720 PF11799 impB/mucB/samB family C-terminal domain SMD_RS02720 PF00817 impB/mucB/samB family SMD_RS02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS02735 PF03466 LysR substrate binding domain SMD_RS02740 PF08241 Methyltransferase domain SMD_RS02745 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS02750 PF00593 TonB dependent receptor SMD_RS02750 PF07715 TonB-dependent Receptor Plug Domain SMD_RS02765 PF13185 GAF domain SMD_RS02775 PF00155 Aminotransferase class I and II SMD_RS02775 PF00392 Bacterial regulatory proteins, gntR family SMD_RS02780 PF01625 Peptide methionine sulfoxide reductase SMD_RS02785 PF02683 Cytochrome C biogenesis protein transmembrane region SMD_RS02785 PF00578 AhpC/TSA family SMD_RS02785 PF17991 Thioredoxin like C-terminal domain SMD_RS02790 PF01641 SelR domain SMD_RS02795 PF00072 Response regulator receiver domain SMD_RS02795 PF00486 Transcriptional regulatory protein, C terminal SMD_RS02800 PF08448 PAS fold SMD_RS02800 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB SMD_RS02800 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS02800 PF00672 HAMP domain SMD_RS02805 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS02805 PF00672 HAMP domain SMD_RS02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS02810 PF00486 Transcriptional regulatory protein, C terminal SMD_RS02810 PF00072 Response regulator receiver domain SMD_RS02815 PF13537 Glutamine amidotransferase domain SMD_RS02815 PF00733 Asparagine synthase SMD_RS02825 PF01242 6-pyruvoyl tetrahydropterin synthase SMD_RS02830 PF07715 TonB-dependent Receptor Plug Domain SMD_RS02830 PF00593 TonB dependent receptor SMD_RS02840 PF00270 DEAD/DEAH box helicase SMD_RS02840 PF00271 Helicase conserved C-terminal domain SMD_RS02850 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS02850 PF14497 Glutathione S-transferase, C-terminal domain SMD_RS02855 PF03167 Uracil DNA glycosylase superfamily SMD_RS02865 PF00437 Type II/IV secretion system protein SMD_RS02885 PF00571 CBS domain SMD_RS02885 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS02890 PF01053 Cys/Met metabolism PLP-dependent enzyme SMD_RS02900 PF00005 ABC transporter SMD_RS02905 PF08241 Methyltransferase domain SMD_RS02910 PF05045 Rhamnan synthesis protein F SMD_RS02910 PF14307 Glycosyltransferase WbsX SMD_RS02915 PF16363 GDP-mannose 4,6 dehydratase SMD_RS02925 PF04138 GtrA-like protein SMD_RS02930 PF00535 Glycosyl transferase family 2 SMD_RS02940 PF13683 Integrase core domain SMD_RS02940 PF13276 HTH-like domain SMD_RS02945 PF01695 IstB-like ATP binding protein SMD_RS02950 PF00665 Integrase core domain SMD_RS02955 PF13276 HTH-like domain SMD_RS02955 PF13683 Integrase core domain SMD_RS02960 PF01527 Transposase SMD_RS02970 PF01012 Electron transfer flavoprotein domain SMD_RS02970 PF00766 Electron transfer flavoprotein FAD-binding domain SMD_RS02975 PF01012 Electron transfer flavoprotein domain SMD_RS02980 PF16363 GDP-mannose 4,6 dehydratase SMD_RS02985 PF00483 Nucleotidyl transferase SMD_RS02990 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMD_RS02995 PF04321 RmlD substrate binding domain SMD_RS03000 PF00483 Nucleotidyl transferase SMD_RS03000 PF01050 Mannose-6-phosphate isomerase SMD_RS03005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMD_RS03005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMD_RS03005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMD_RS03005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMD_RS03010 PF01144 Coenzyme A transferase SMD_RS03015 PF01144 Coenzyme A transferase SMD_RS03035 PF00005 ABC transporter SMD_RS03040 PF02405 Permease MlaE SMD_RS03050 PF00816 H-NS histone family SMD_RS03055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMD_RS03055 PF03129 Anticodon binding domain SMD_RS03055 PF04073 Aminoacyl-tRNA editing domain SMD_RS03065 PF01066 CDP-alcohol phosphatidyltransferase SMD_RS03075 PF00583 Acetyltransferase (GNAT) family SMD_RS03085 PF00133 tRNA synthetases class I (I, L, M and V) SMD_RS03085 PF10458 Valyl tRNA synthetase tRNA binding arm SMD_RS03085 PF08264 Anticodon-binding domain of tRNA SMD_RS03100 PF02789 Cytosol aminopeptidase family, N-terminal domain SMD_RS03100 PF00883 Cytosol aminopeptidase family, catalytic domain SMD_RS03110 PF03739 Lipopolysaccharide export system permease LptF/LptG SMD_RS03120 PF02899 Phage integrase, N-terminal SAM-like domain SMD_RS03120 PF00589 Phage integrase family SMD_RS03125 PF13098 Thioredoxin-like domain SMD_RS03125 PF10411 Disulfide bond isomerase protein N-terminus SMD_RS03130 PF00704 Glycosyl hydrolases family 18 SMD_RS03130 PF00041 Fibronectin type III domain SMD_RS03130 PF00553 Cellulose binding domain SMD_RS03135 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SMD_RS03135 PF02769 AIR synthase related protein, C-terminal domain SMD_RS03135 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SMD_RS03145 PF00082 Subtilase family SMD_RS03145 PF04151 Bacterial pre-peptidase C-terminal domain SMD_RS03150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMD_RS03150 PF00437 Type II/IV secretion system protein SMD_RS03155 PF00482 Type II secretion system (T2SS), protein F SMD_RS03160 PF08334 Type II secretion system (T2SS), protein G SMD_RS03165 PF12019 Type II transport protein GspH SMD_RS03170 PF07963 Prokaryotic N-terminal methylation motif SMD_RS03180 PF03934 Type II secretion system (T2SS), protein K SMD_RS03185 PF05137 Fimbrial assembly protein (PilN) SMD_RS03190 PF10741 Type II secretion system (T2SS), protein M subtype b SMD_RS03200 PF03958 Bacterial type II/III secretion system short domain SMD_RS03200 PF00263 Bacterial type II and III secretion system protein SMD_RS03215 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SMD_RS03215 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SMD_RS03225 PF16970 Type-1 fimbrial protein, A SMD_RS03230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SMD_RS03230 PF02753 Pili assembly chaperone PapD, C-terminal domain SMD_RS03235 PF13954 PapC N-terminal domain SMD_RS03235 PF00577 Outer membrane usher protein SMD_RS03235 PF13953 PapC C-terminal domain SMD_RS03245 PF02350 UDP-N-acetylglucosamine 2-epimerase SMD_RS03255 PF13632 Glycosyl transferase family group 2 SMD_RS03255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMD_RS03270 PF00860 Permease family SMD_RS03275 PF12848 ABC transporter SMD_RS03275 PF00005 ABC transporter SMD_RS03285 PF00464 Serine hydroxymethyltransferase SMD_RS03300 PF03477 ATP cone domain SMD_RS03305 PF01872 RibD C-terminal domain SMD_RS03305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMD_RS03325 PF00677 Lumazine binding domain SMD_RS03330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMD_RS03330 PF00925 GTP cyclohydrolase II SMD_RS03335 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMD_RS03340 PF01029 NusB family SMD_RS03345 PF02769 AIR synthase related protein, C-terminal domain SMD_RS03345 PF00586 AIR synthase related protein, N-terminal domain SMD_RS03355 PF05656 Protein of unknown function (DUF805) SMD_RS03365 PF03797 Autotransporter beta-domain SMD_RS03370 PF03797 Autotransporter beta-domain SMD_RS03375 PF01757 Acyltransferase family SMD_RS03380 PF01565 FAD binding domain SMD_RS03380 PF02913 FAD linked oxidases, C-terminal domain SMD_RS03385 PF04307 LexA-binding, inner membrane-associated putative hydrolase SMD_RS03390 PF02021 Uncharacterised protein family UPF0102 SMD_RS03400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMD_RS03420 PF02381 MraZ protein, putative antitoxin-like SMD_RS03425 PF01795 MraW methylase family SMD_RS03430 PF04999 Cell division protein FtsL SMD_RS03435 PF00905 Penicillin binding protein transpeptidase domain SMD_RS03435 PF03717 Penicillin-binding Protein dimerisation domain SMD_RS03440 PF02875 Mur ligase family, glutamate ligase domain SMD_RS03440 PF01225 Mur ligase family, catalytic domain SMD_RS03440 PF08245 Mur ligase middle domain SMD_RS03445 PF02875 Mur ligase family, glutamate ligase domain SMD_RS03445 PF01225 Mur ligase family, catalytic domain SMD_RS03445 PF08245 Mur ligase middle domain SMD_RS03450 PF00953 Glycosyl transferase family 4 SMD_RS03455 PF01098 Cell cycle protein SMD_RS03460 PF03033 Glycosyltransferase family 28 N-terminal domain SMD_RS03460 PF04101 Glycosyltransferase family 28 C-terminal domain SMD_RS03465 PF08245 Mur ligase middle domain SMD_RS03465 PF01225 Mur ligase family, catalytic domain SMD_RS03465 PF02875 Mur ligase family, glutamate ligase domain SMD_RS03470 PF01820 D-ala D-ala ligase N-terminus SMD_RS03470 PF07478 D-ala D-ala ligase C-terminus SMD_RS03475 PF03799 Cell division protein FtsQ SMD_RS03475 PF08478 POTRA domain, FtsQ-type SMD_RS03480 PF02491 SHS2 domain inserted in FTSA SMD_RS03485 PF12327 FtsZ family, C-terminal domain SMD_RS03485 PF00091 Tubulin/FtsZ family, GTPase domain SMD_RS03490 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SMD_RS03500 PF01476 LysM domain SMD_RS03500 PF01551 Peptidase family M23 SMD_RS03500 PF08525 Opacity-associated protein A N-terminal motif SMD_RS03505 PF02810 SEC-C motif SMD_RS03505 PF01043 SecA preprotein cross-linking domain SMD_RS03505 PF07516 SecA Wing and Scaffold domain SMD_RS03505 PF07517 SecA DEAD-like domain SMD_RS03510 PF00293 NUDIX domain SMD_RS03520 PF02219 Methylenetetrahydrofolate reductase SMD_RS03525 PF00561 alpha/beta hydrolase fold SMD_RS03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS03530 PF07694 5TMR of 5TMR-LYT SMD_RS03530 PF06580 Histidine kinase SMD_RS03530 PF13492 GAF domain SMD_RS03535 PF04397 LytTr DNA-binding domain SMD_RS03535 PF00072 Response regulator receiver domain SMD_RS03555 PF04073 Aminoacyl-tRNA editing domain SMD_RS03560 PF07486 Cell Wall Hydrolase SMD_RS03560 PF01471 Putative peptidoglycan binding domain SMD_RS03570 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SMD_RS03570 PF05221 S-adenosyl-L-homocysteine hydrolase SMD_RS03580 PF00311 Phosphoenolpyruvate carboxylase SMD_RS03585 PF03061 Thioesterase superfamily SMD_RS03590 PF02773 S-adenosylmethionine synthetase, C-terminal domain SMD_RS03590 PF00438 S-adenosylmethionine synthetase, N-terminal domain SMD_RS03590 PF02772 S-adenosylmethionine synthetase, central domain SMD_RS03610 PF13847 Methyltransferase domain SMD_RS03615 PF01207 Dihydrouridine synthase (Dus) SMD_RS03625 PF00294 pfkB family carbohydrate kinase SMD_RS03630 PF07670 Nucleoside recognition SMD_RS03630 PF07662 Na+ dependent nucleoside transporter C-terminus SMD_RS03630 PF01773 Na+ dependent nucleoside transporter N-terminus SMD_RS03635 PF00248 Aldo/keto reductase family SMD_RS03645 PF00593 TonB dependent receptor SMD_RS03645 PF07715 TonB-dependent Receptor Plug Domain SMD_RS03665 PF00005 ABC transporter SMD_RS03670 PF13472 GDSL-like Lipase/Acylhydrolase family SMD_RS03675 PF00072 Response regulator receiver domain SMD_RS03675 PF00486 Transcriptional regulatory protein, C terminal SMD_RS03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS03680 PF08521 Two-component sensor kinase N-terminal SMD_RS03680 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS03690 PF01219 Prokaryotic diacylglycerol kinase SMD_RS03695 PF03741 Integral membrane protein TerC family SMD_RS03700 PF07690 Major Facilitator Superfamily SMD_RS03705 PF04011 LemA family SMD_RS03720 PF01790 Prolipoprotein diacylglyceryl transferase SMD_RS03725 PF00303 Thymidylate synthase SMD_RS03730 PF00186 Dihydrofolate reductase SMD_RS03735 PF06940 Domain of unknown function (DUF1287) SMD_RS03740 PF00149 Calcineurin-like phosphoesterase SMD_RS03745 PF04379 ApaG domain SMD_RS03750 PF00398 Ribosomal RNA adenine dimethylase SMD_RS03755 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMD_RS03760 PF09312 SurA N-terminal domain SMD_RS03760 PF00639 PPIC-type PPIASE domain SMD_RS03765 PF04453 LPS transport system D SMD_RS03765 PF03968 OstA-like protein SMD_RS03770 PF00850 Histone deacetylase domain SMD_RS03775 PF01923 Cobalamin adenosyltransferase SMD_RS03785 PF01494 FAD binding domain SMD_RS03790 PF01494 FAD binding domain SMD_RS03795 PF13202 EF hand SMD_RS03795 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMD_RS03800 PF18125 RlmM ferredoxin-like domain SMD_RS03800 PF01728 FtsJ-like methyltransferase SMD_RS03820 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SMD_RS03820 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMD_RS03830 PF01625 Peptide methionine sulfoxide reductase SMD_RS03835 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMD_RS03840 PF01272 Transcription elongation factor, GreA/GreB, C-term SMD_RS03840 PF14760 Rnk N-terminus SMD_RS03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS03845 PF03466 LysR substrate binding domain SMD_RS03850 PF13192 Thioredoxin domain SMD_RS03850 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS03855 PF00578 AhpC/TSA family SMD_RS03855 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMD_RS03860 PF05175 Methyltransferase small domain SMD_RS03860 PF17827 PrmC N-terminal domain SMD_RS03865 PF00561 alpha/beta hydrolase fold SMD_RS03870 PF03466 LysR substrate binding domain SMD_RS03870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS03875 PF07690 Major Facilitator Superfamily SMD_RS03885 PF00293 NUDIX domain SMD_RS03890 PF01367 5'-3' exonuclease, C-terminal SAM fold SMD_RS03890 PF00476 DNA polymerase family A SMD_RS03890 PF01612 3'-5' exonuclease SMD_RS03890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMD_RS03905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SMD_RS03905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SMD_RS03905 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SMD_RS03925 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SMD_RS03930 PF02233 NAD(P) transhydrogenase beta subunit SMD_RS03940 PF01883 Iron-sulfur cluster assembly protein SMD_RS03945 PF01063 Amino-transferase class IV SMD_RS03950 PF04151 Bacterial pre-peptidase C-terminal domain SMD_RS03950 PF00082 Subtilase family SMD_RS03965 PF03358 NADPH-dependent FMN reductase SMD_RS03970 PF03631 Virulence factor BrkB SMD_RS03975 PF00578 AhpC/TSA family SMD_RS03980 PF03976 Polyphosphate kinase 2 (PPK2) SMD_RS03990 PF00472 RF-1 domain SMD_RS03990 PF03462 PCRF domain SMD_RS03995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SMD_RS03995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SMD_RS03995 PF01488 Shikimate / quinate 5-dehydrogenase SMD_RS04005 PF03550 Outer membrane lipoprotein LolB SMD_RS04010 PF00288 GHMP kinases N terminal domain SMD_RS04010 PF08544 GHMP kinases C terminal SMD_RS04020 PF14572 Phosphoribosyl synthetase-associated domain SMD_RS04020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SMD_RS04025 PF14693 Ribosomal protein TL5, C-terminal domain SMD_RS04025 PF01386 Ribosomal L25p family SMD_RS04030 PF01195 Peptidyl-tRNA hydrolase SMD_RS04035 PF06071 Protein of unknown function (DUF933) SMD_RS04035 PF01926 50S ribosome-binding GTPase SMD_RS04040 PF12951 Passenger-associated-transport-repeat SMD_RS04040 PF03797 Autotransporter beta-domain SMD_RS04045 PF00072 Response regulator receiver domain SMD_RS04045 PF00196 Bacterial regulatory proteins, luxR family SMD_RS04050 PF00072 Response regulator receiver domain SMD_RS04050 PF09456 RcsC Alpha-Beta-Loop (ABL) SMD_RS04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS04050 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS04055 PF00989 PAS fold SMD_RS04055 PF00563 EAL domain SMD_RS04055 PF01590 GAF domain SMD_RS04055 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS04060 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS04060 PF09456 RcsC Alpha-Beta-Loop (ABL) SMD_RS04060 PF00072 Response regulator receiver domain SMD_RS04065 PF07715 TonB-dependent Receptor Plug Domain SMD_RS04065 PF00593 TonB dependent receptor SMD_RS04070 PF03575 Peptidase family S51 SMD_RS04075 PF01112 Asparaginase SMD_RS04095 PF00009 Elongation factor Tu GTP binding domain SMD_RS04095 PF03144 Elongation factor Tu domain 2 SMD_RS04095 PF03143 Elongation factor Tu C-terminal domain SMD_RS04105 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SMD_RS04110 PF00467 KOW motif SMD_RS04110 PF02357 Transcription termination factor nusG SMD_RS04115 PF00298 Ribosomal protein L11, RNA binding domain SMD_RS04115 PF03946 Ribosomal protein L11, N-terminal domain SMD_RS04120 PF00687 Ribosomal protein L1p/L10e family SMD_RS04125 PF00466 Ribosomal protein L10 SMD_RS04130 PF00542 Ribosomal protein L7/L12 C-terminal domain SMD_RS04130 PF16320 Ribosomal protein L7/L12 dimerisation domain SMD_RS04135 PF04561 RNA polymerase Rpb2, domain 2 SMD_RS04135 PF00562 RNA polymerase Rpb2, domain 6 SMD_RS04135 PF04560 RNA polymerase Rpb2, domain 7 SMD_RS04135 PF04563 RNA polymerase beta subunit SMD_RS04135 PF04565 RNA polymerase Rpb2, domain 3 SMD_RS04135 PF10385 RNA polymerase beta subunit external 1 domain SMD_RS04140 PF04983 RNA polymerase Rpb1, domain 3 SMD_RS04140 PF05000 RNA polymerase Rpb1, domain 4 SMD_RS04140 PF04998 RNA polymerase Rpb1, domain 5 SMD_RS04140 PF04997 RNA polymerase Rpb1, domain 1 SMD_RS04140 PF00623 RNA polymerase Rpb1, domain 2 SMD_RS04145 PF00164 Ribosomal protein S12/S23 SMD_RS04150 PF00177 Ribosomal protein S7p/S5e SMD_RS04155 PF03144 Elongation factor Tu domain 2 SMD_RS04155 PF00679 Elongation factor G C-terminus SMD_RS04155 PF00009 Elongation factor Tu GTP binding domain SMD_RS04155 PF03764 Elongation factor G, domain IV SMD_RS04155 PF14492 Elongation Factor G, domain II SMD_RS04160 PF03144 Elongation factor Tu domain 2 SMD_RS04160 PF03143 Elongation factor Tu C-terminal domain SMD_RS04160 PF00009 Elongation factor Tu GTP binding domain SMD_RS04165 PF00338 Ribosomal protein S10p/S20e SMD_RS04170 PF00297 Ribosomal protein L3 SMD_RS04175 PF00573 Ribosomal protein L4/L1 family SMD_RS04180 PF00276 Ribosomal protein L23 SMD_RS04185 PF00181 Ribosomal Proteins L2, RNA binding domain SMD_RS04185 PF03947 Ribosomal Proteins L2, C-terminal domain SMD_RS04190 PF00203 Ribosomal protein S19 SMD_RS04195 PF00237 Ribosomal protein L22p/L17e SMD_RS04200 PF07650 KH domain SMD_RS04200 PF00189 Ribosomal protein S3, C-terminal domain SMD_RS04205 PF00252 Ribosomal protein L16p/L10e SMD_RS04210 PF00831 Ribosomal L29 protein SMD_RS04215 PF00366 Ribosomal protein S17 SMD_RS04220 PF00238 Ribosomal protein L14p/L23e SMD_RS04225 PF00467 KOW motif SMD_RS04225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SMD_RS04230 PF00673 ribosomal L5P family C-terminus SMD_RS04230 PF00281 Ribosomal protein L5 SMD_RS04235 PF00253 Ribosomal protein S14p/S29e SMD_RS04240 PF00410 Ribosomal protein S8 SMD_RS04245 PF00347 Ribosomal protein L6 SMD_RS04250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SMD_RS04255 PF03719 Ribosomal protein S5, C-terminal domain SMD_RS04255 PF00333 Ribosomal protein S5, N-terminal domain SMD_RS04260 PF00327 Ribosomal protein L30p/L7e SMD_RS04265 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SMD_RS04270 PF00344 SecY translocase SMD_RS04275 PF00416 Ribosomal protein S13/S18 SMD_RS04280 PF00411 Ribosomal protein S11 SMD_RS04285 PF01479 S4 domain SMD_RS04285 PF00163 Ribosomal protein S4/S9 N-terminal domain SMD_RS04290 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SMD_RS04290 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SMD_RS04290 PF01000 RNA polymerase Rpb3/RpoA insert domain SMD_RS04295 PF01196 Ribosomal protein L17 SMD_RS04300 PF02600 Disulfide bond formation protein DsbB SMD_RS04310 PF01474 Class-II DAHP synthetase family SMD_RS04320 PF01425 Amidase SMD_RS04330 PF00009 Elongation factor Tu GTP binding domain SMD_RS04330 PF00679 Elongation factor G C-terminus SMD_RS04330 PF03144 Elongation factor Tu domain 2 SMD_RS04335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMD_RS04340 PF00056 lactate/malate dehydrogenase, NAD binding domain SMD_RS04340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMD_RS04345 PF00849 RNA pseudouridylate synthase SMD_RS04350 PF13193 AMP-binding enzyme C-terminal domain SMD_RS04350 PF00501 AMP-binding enzyme SMD_RS04350 PF16177 Acetyl-coenzyme A synthetase N-terminus SMD_RS04365 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS04365 PF00043 Glutathione S-transferase, C-terminal domain SMD_RS04375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMD_RS04375 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS04385 PF00107 Zinc-binding dehydrogenase SMD_RS04385 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS04390 PF00691 OmpA family SMD_RS04390 PF05736 OprF membrane domain SMD_RS04400 PF01479 S4 domain SMD_RS04400 PF00849 RNA pseudouridylate synthase SMD_RS04410 PF00155 Aminotransferase class I and II SMD_RS04420 PF00107 Zinc-binding dehydrogenase SMD_RS04420 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS04425 PF10459 Peptidase S46 SMD_RS04430 PF00300 Histidine phosphatase superfamily (branch 1) SMD_RS04435 PF02875 Mur ligase family, glutamate ligase domain SMD_RS04435 PF08245 Mur ligase middle domain SMD_RS04450 PF00156 Phosphoribosyl transferase domain SMD_RS04455 PF04305 Protein of unknown function (DUF455) SMD_RS04470 PF00149 Calcineurin-like phosphoesterase SMD_RS04475 PF01569 PAP2 superfamily SMD_RS04480 PF13439 Glycosyltransferase Family 4 SMD_RS04480 PF00534 Glycosyl transferases group 1 SMD_RS04485 PF00593 TonB dependent receptor SMD_RS04485 PF07715 TonB-dependent Receptor Plug Domain SMD_RS04490 PF02541 Ppx/GppA phosphatase family SMD_RS04495 PF02503 Polyphosphate kinase middle domain SMD_RS04495 PF13090 Polyphosphate kinase C-terminal domain 2 SMD_RS04495 PF17941 Polyphosphate kinase C-terminal domain 1 SMD_RS04495 PF13089 Polyphosphate kinase N-terminal domain SMD_RS04500 PF00989 PAS fold SMD_RS04500 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS04500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS04500 PF11808 Phosphate regulon sensor protein PhoR SMD_RS04505 PF00486 Transcriptional regulatory protein, C terminal SMD_RS04505 PF00072 Response regulator receiver domain SMD_RS04510 PF07720 Tetratricopeptide repeat SMD_RS04510 PF01435 Peptidase family M48 SMD_RS04515 PF00462 Glutaredoxin SMD_RS04525 PF00180 Isocitrate/isopropylmalate dehydrogenase SMD_RS04535 PF03466 LysR substrate binding domain SMD_RS04535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS04590 PF05697 Bacterial trigger factor protein (TF) SMD_RS04590 PF05698 Bacterial trigger factor protein (TF) C-terminus SMD_RS04595 PF00574 Clp protease SMD_RS04600 PF06689 ClpX C4-type zinc finger SMD_RS04600 PF10431 C-terminal, D2-small domain, of ClpB protein SMD_RS04600 PF07724 AAA domain (Cdc48 subfamily) SMD_RS04605 PF05362 Lon protease (S16) C-terminal proteolytic domain SMD_RS04605 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS04605 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMD_RS04610 PF00216 Bacterial DNA-binding protein SMD_RS04640 PF05698 Bacterial trigger factor protein (TF) C-terminus SMD_RS04695 PF06067 Domain of unknown function (DUF932) SMD_RS04700 PF17762 HTH domain found in ParB protein SMD_RS04700 PF02195 ParB-like nuclease domain SMD_RS04710 PF05284 Protein of unknown function (DUF736) SMD_RS04750 PF13614 AAA domain SMD_RS04765 PF10502 Signal peptidase, peptidase S26 SMD_RS04775 PF00672 HAMP domain SMD_RS04775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS04775 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS04780 PF00486 Transcriptional regulatory protein, C terminal SMD_RS04780 PF00072 Response regulator receiver domain SMD_RS04805 PF02321 Outer membrane efflux protein SMD_RS04810 PF00873 AcrB/AcrD/AcrF family SMD_RS04815 PF00873 AcrB/AcrD/AcrF family SMD_RS04820 PF13533 Biotin-lipoyl like SMD_RS04825 PF00072 Response regulator receiver domain SMD_RS04825 PF00486 Transcriptional regulatory protein, C terminal SMD_RS04830 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS04830 PF00672 HAMP domain SMD_RS04830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS04840 PF06629 MltA-interacting protein MipA SMD_RS04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS04860 PF03466 LysR substrate binding domain SMD_RS04870 PF02534 Type IV secretory system Conjugative DNA transfer SMD_RS04880 PF00437 Type II/IV secretion system protein SMD_RS04885 PF04956 TrbC/VIRB2 family SMD_RS04895 PF03135 CagE, TrbE, VirB family, component of type IV transporter system SMD_RS04925 PF03743 Bacterial conjugation TrbI-like protein SMD_RS04940 PF00753 Metallo-beta-lactamase superfamily SMD_RS04940 PF16123 Hydroxyacylglutathione hydrolase C-terminus SMD_RS04950 PF00075 RNase H SMD_RS04955 PF00929 Exonuclease SMD_RS04975 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SMD_RS04985 PF12706 Beta-lactamase superfamily domain SMD_RS04995 PF00893 Small Multidrug Resistance protein SMD_RS05030 PF00437 Type II/IV secretion system protein SMD_RS05035 PF00263 Bacterial type II and III secretion system protein SMD_RS05035 PF03958 Bacterial type II/III secretion system short domain SMD_RS05075 PF00691 OmpA family SMD_RS05075 PF05736 OprF membrane domain SMD_RS05090 PF12169 DNA polymerase III subunits gamma and tau domain III SMD_RS05090 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SMD_RS05090 PF12170 DNA polymerase III tau subunit V interacting with alpha SMD_RS05095 PF02575 YbaB/EbfC DNA-binding family SMD_RS05100 PF13662 Toprim domain SMD_RS05100 PF02132 RecR protein SMD_RS05105 PF01230 HIT domain SMD_RS05115 PF11992 Domain of unknown function (DUF3488) SMD_RS05115 PF01841 Transglutaminase-like superfamily SMD_RS05115 PF13559 Domain of unknown function (DUF4129) SMD_RS05125 PF07726 ATPase family associated with various cellular activities (AAA) SMD_RS05125 PF17863 AAA lid domain SMD_RS05135 PF02545 Maf-like protein SMD_RS05140 PF02620 Large ribosomal RNA subunit accumulation protein YceD SMD_RS05145 PF01783 Ribosomal L32p protein family SMD_RS05150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMD_RS05150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMD_RS05160 PF00698 Acyl transferase domain SMD_RS05170 PF00550 Phosphopantetheine attachment site SMD_RS05175 PF02801 Beta-ketoacyl synthase, C-terminal domain SMD_RS05175 PF00109 Beta-ketoacyl synthase, N-terminal domain SMD_RS05180 PF00425 chorismate binding enzyme SMD_RS05180 PF04715 Anthranilate synthase component I, N terminal region SMD_RS05185 PF02618 YceG-like family SMD_RS05190 PF02223 Thymidylate kinase SMD_RS05195 PF09115 DNA polymerase III, delta subunit, C terminal SMD_RS05220 PF14552 Tautomerase enzyme SMD_RS05240 PF00593 TonB dependent receptor SMD_RS05240 PF07715 TonB-dependent Receptor Plug Domain SMD_RS05250 PF07690 Major Facilitator Superfamily SMD_RS05255 PF00455 DeoR C terminal sensor domain SMD_RS05255 PF08220 DeoR-like helix-turn-helix domain SMD_RS05260 PF13599 Pentapeptide repeats (9 copies) SMD_RS05270 PF00392 Bacterial regulatory proteins, gntR family SMD_RS05270 PF00155 Aminotransferase class I and II SMD_RS05275 PF00892 EamA-like transporter family SMD_RS05280 PF03466 LysR substrate binding domain SMD_RS05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS05285 PF07690 Major Facilitator Superfamily SMD_RS05305 PF07690 Major Facilitator Superfamily SMD_RS05310 PF09278 MerR, DNA binding SMD_RS05310 PF00376 MerR family regulatory protein SMD_RS05320 PF03466 LysR substrate binding domain SMD_RS05320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS05325 PF03807 NADP oxidoreductase coenzyme F420-dependent SMD_RS05325 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMD_RS05330 PF01168 Alanine racemase, N-terminal domain SMD_RS05335 PF00437 Type II/IV secretion system protein SMD_RS05340 PF00437 Type II/IV secretion system protein SMD_RS05345 PF00248 Aldo/keto reductase family SMD_RS05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS05350 PF03466 LysR substrate binding domain SMD_RS05365 PF03352 Methyladenine glycosylase SMD_RS05370 PF13687 Domain of unknown function (DUF4153) SMD_RS05375 PF02622 Uncharacterized ACR, COG1678 SMD_RS05380 PF03652 Holliday junction resolvase SMD_RS05385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMD_RS05385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMD_RS05405 PF01769 Divalent cation transporter SMD_RS05405 PF00571 CBS domain SMD_RS05405 PF03448 MgtE intracellular N domain SMD_RS05410 PF00391 PEP-utilising enzyme, mobile domain SMD_RS05410 PF02896 PEP-utilising enzyme, TIM barrel domain SMD_RS05410 PF05524 PEP-utilising enzyme, N-terminal SMD_RS05415 PF00381 PTS HPr component phosphorylation site SMD_RS05425 PF03668 P-loop ATPase protein family SMD_RS05430 PF02603 HPr Serine kinase N terminus SMD_RS05430 PF07475 HPr Serine kinase C-terminal domain SMD_RS05435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SMD_RS05440 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SMD_RS05445 PF04552 Sigma-54, DNA binding domain SMD_RS05445 PF04963 Sigma-54 factor, core binding domain SMD_RS05445 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMD_RS05450 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMD_RS05450 PF00005 ABC transporter SMD_RS05470 PF01380 SIS domain SMD_RS05470 PF00571 CBS domain SMD_RS05480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMD_RS05500 PF00551 Formyl transferase SMD_RS05520 PF00586 AIR synthase related protein, N-terminal domain SMD_RS05520 PF02769 AIR synthase related protein, C-terminal domain SMD_RS05530 PF01594 AI-2E family transporter SMD_RS05535 PF00308 Bacterial dnaA protein SMD_RS05540 PF00483 Nucleotidyl transferase SMD_RS05545 PF01636 Phosphotransferase enzyme family SMD_RS05550 PF04226 Transglycosylase associated protein SMD_RS05580 PF00258 Flavodoxin SMD_RS05580 PF00175 Oxidoreductase NAD-binding domain SMD_RS05580 PF00667 FAD binding domain SMD_RS05585 PF02424 ApbE family SMD_RS05605 PF07715 TonB-dependent Receptor Plug Domain SMD_RS05605 PF00593 TonB dependent receptor SMD_RS05615 PF13640 2OG-Fe(II) oxygenase superfamily SMD_RS05615 PF18331 PKHD-type hydroxylase C-terminal domain SMD_RS05625 PF00593 TonB dependent receptor SMD_RS05625 PF07715 TonB-dependent Receptor Plug Domain SMD_RS05635 PF00355 Rieske [2Fe-2S] domain SMD_RS05650 PF00266 Aminotransferase class-V SMD_RS05655 PF01458 Uncharacterized protein family (UPF0051) SMD_RS05660 PF00005 ABC transporter SMD_RS05665 PF01458 Uncharacterized protein family (UPF0051) SMD_RS05670 PF02082 Transcriptional regulator SMD_RS05680 PF01965 DJ-1/PfpI family SMD_RS05705 PF02566 OsmC-like protein SMD_RS05710 PF02567 Phenazine biosynthesis-like protein SMD_RS05715 PF02567 Phenazine biosynthesis-like protein SMD_RS05720 PF00696 Amino acid kinase family SMD_RS05720 PF01842 ACT domain SMD_RS05730 PF08245 Mur ligase middle domain SMD_RS05730 PF02875 Mur ligase family, glutamate ligase domain SMD_RS05755 PF00348 Polyprenyl synthetase SMD_RS05760 PF00128 Alpha amylase, catalytic domain SMD_RS05770 PF10566 Glycoside hydrolase 97 SMD_RS05770 PF14508 Glycosyl-hydrolase 97 N-terminal SMD_RS05770 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation SMD_RS05780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SMD_RS05785 PF00128 Alpha amylase, catalytic domain SMD_RS05785 PF00686 Starch binding domain SMD_RS05805 PF13732 Domain of unknown function (DUF4162) SMD_RS05805 PF00005 ABC transporter SMD_RS05810 PF00356 Bacterial regulatory proteins, lacI family SMD_RS05815 PF00436 Single-strand binding protein family SMD_RS05830 PF00732 GMC oxidoreductase SMD_RS05830 PF05199 GMC oxidoreductase SMD_RS05845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMD_RS05855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMD_RS05855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMD_RS05860 PF03825 Nucleoside H+ symporter SMD_RS05870 PF00356 Bacterial regulatory proteins, lacI family SMD_RS05875 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS05875 PF03707 Bacterial signalling protein N terminal repeat SMD_RS05875 PF00563 EAL domain SMD_RS05885 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS05910 PF01022 Bacterial regulatory protein, arsR family SMD_RS05925 PF13443 Cro/C1-type HTH DNA-binding domain SMD_RS05930 PF00571 CBS domain SMD_RS05930 PF03471 Transporter associated domain SMD_RS05930 PF03741 Integral membrane protein TerC family SMD_RS05935 PF00149 Calcineurin-like phosphoesterase SMD_RS05940 PF01794 Ferric reductase like transmembrane component SMD_RS05950 PF05114 Protein of unknown function (DUF692) SMD_RS05960 PF07681 DoxX SMD_RS05970 PF02683 Cytochrome C biogenesis protein transmembrane region SMD_RS05970 PF17991 Thioredoxin like C-terminal domain SMD_RS05970 PF00578 AhpC/TSA family SMD_RS05975 PF00072 Response regulator receiver domain SMD_RS05975 PF00486 Transcriptional regulatory protein, C terminal SMD_RS05980 PF00672 HAMP domain SMD_RS05980 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS05980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS05990 PF08946 Osmosensory transporter coiled coil SMD_RS05990 PF00083 Sugar (and other) transporter SMD_RS05995 PF01156 Inosine-uridine preferring nucleoside hydrolase SMD_RS06005 PF00392 Bacterial regulatory proteins, gntR family SMD_RS06005 PF07729 FCD domain SMD_RS06015 PF00698 Acyl transferase domain SMD_RS06020 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SMD_RS06025 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG SMD_RS06035 PF01039 Carboxyl transferase domain SMD_RS06040 PF06857 Malonate decarboxylase delta subunit (MdcD) SMD_RS06045 PF16957 Malonate decarboxylase, alpha subunit, transporter SMD_RS06050 PF00593 TonB dependent receptor SMD_RS06050 PF07660 Secretin and TonB N terminus short domain SMD_RS06050 PF07715 TonB-dependent Receptor Plug Domain SMD_RS06055 PF06039 Malate:quinone oxidoreductase (Mqo) SMD_RS06060 PF00583 Acetyltransferase (GNAT) family SMD_RS06065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS06065 PF03466 LysR substrate binding domain SMD_RS06070 PF01810 LysE type translocator SMD_RS06080 PF00854 POT family SMD_RS06090 PF03169 OPT oligopeptide transporter protein SMD_RS06095 PF00326 Prolyl oligopeptidase family SMD_RS06095 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMD_RS06095 PF07676 WD40-like Beta Propeller Repeat SMD_RS06110 PF03776 Septum formation topological specificity factor MinE SMD_RS06115 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMD_RS06120 PF03775 Septum formation inhibitor MinC, C-terminal domain SMD_RS06120 PF05209 Septum formation inhibitor MinC, N-terminal domain SMD_RS06130 PF07730 Histidine kinase SMD_RS06135 PF00196 Bacterial regulatory proteins, luxR family SMD_RS06135 PF00072 Response regulator receiver domain SMD_RS06175 PF01370 NAD dependent epimerase/dehydratase family SMD_RS06175 PF02222 ATP-grasp domain SMD_RS06185 PF04377 Arginine-tRNA-protein transferase, C terminus SMD_RS06185 PF04376 Arginine-tRNA-protein transferase, N terminus SMD_RS06195 PF04542 Sigma-70 region 2 SMD_RS06195 PF08281 Sigma-70, region 4 SMD_RS06210 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS06230 PF00005 ABC transporter SMD_RS06230 PF17755 UvrA DNA-binding domain SMD_RS06230 PF17760 UvrA interaction domain SMD_RS06235 PF00829 Ribosomal prokaryotic L21 protein SMD_RS06240 PF01016 Ribosomal L27 protein SMD_RS06245 PF01926 50S ribosome-binding GTPase SMD_RS06245 PF01018 GTP1/OBG SMD_RS06250 PF01649 Ribosomal protein S20 SMD_RS06255 PF03023 Lipid II flippase MurJ SMD_RS06260 PF06574 FAD synthetase SMD_RS06260 PF01687 Riboflavin kinase SMD_RS06265 PF08264 Anticodon-binding domain of tRNA SMD_RS06265 PF00133 tRNA synthetases class I (I, L, M and V) SMD_RS06265 PF06827 Zinc finger found in FPG and IleRS SMD_RS06270 PF01252 Signal peptidase (SPase) II SMD_RS06275 PF02401 LytB protein SMD_RS06285 PF07947 YhhN family SMD_RS06300 PF07715 TonB-dependent Receptor Plug Domain SMD_RS06300 PF00593 TonB dependent receptor SMD_RS06320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMD_RS06320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMD_RS06355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMD_RS06355 PF06481 COX Aromatic Rich Motif SMD_RS06360 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMD_RS06365 PF00510 Cytochrome c oxidase subunit III SMD_RS06370 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SMD_RS06375 PF00563 EAL domain SMD_RS06375 PF03707 Bacterial signalling protein N terminal repeat SMD_RS06375 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS06380 PF18073 Rubredoxin metal binding domain SMD_RS06385 PF00183 Hsp90 protein SMD_RS06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS06405 PF02978 Signal peptide binding domain SMD_RS06405 PF00448 SRP54-type protein, GTPase domain SMD_RS06405 PF02881 SRP54-type protein, helical bundle domain SMD_RS06410 PF03060 Nitronate monooxygenase SMD_RS06420 PF00886 Ribosomal protein S16 SMD_RS06425 PF01782 RimM N-terminal domain SMD_RS06425 PF05239 PRC-barrel domain SMD_RS06430 PF01746 tRNA (Guanine-1)-methyltransferase SMD_RS06435 PF01245 Ribosomal protein L19 SMD_RS06455 PF01554 MatE SMD_RS06465 PF01479 S4 domain SMD_RS06475 PF00199 Catalase SMD_RS06475 PF06628 Catalase-related immune-responsive SMD_RS06480 PF05192 MutS domain III SMD_RS06480 PF05190 MutS family domain IV SMD_RS06480 PF01624 MutS domain I SMD_RS06480 PF05188 MutS domain II SMD_RS06480 PF00488 MutS domain V SMD_RS06510 PF00672 HAMP domain SMD_RS06510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS06515 PF05433 Glycine zipper 2TM domain SMD_RS06530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS06540 PF03466 LysR substrate binding domain SMD_RS06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS06545 PF01810 LysE type translocator SMD_RS06550 PF00557 Metallopeptidase family M24 SMD_RS06575 PF00202 Aminotransferase class-III SMD_RS06585 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMD_RS06590 PF00892 EamA-like transporter family SMD_RS06595 PF00892 EamA-like transporter family SMD_RS06600 PF12146 Serine aminopeptidase, S33 SMD_RS06605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS06605 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS06610 PF00486 Transcriptional regulatory protein, C terminal SMD_RS06610 PF00072 Response regulator receiver domain SMD_RS06620 PF01638 HxlR-like helix-turn-helix SMD_RS06625 PF07690 Major Facilitator Superfamily SMD_RS06630 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS06635 PF07715 TonB-dependent Receptor Plug Domain SMD_RS06635 PF00593 TonB dependent receptor SMD_RS06640 PF01545 Cation efflux family SMD_RS06645 PF04493 Endonuclease V SMD_RS06650 PF00300 Histidine phosphatase superfamily (branch 1) SMD_RS06660 PF05649 Peptidase family M13 SMD_RS06660 PF01431 Peptidase family M13 SMD_RS06665 PF00072 Response regulator receiver domain SMD_RS06665 PF01966 HD domain SMD_RS06670 PF00271 Helicase conserved C-terminal domain SMD_RS06670 PF03461 TRCF domain SMD_RS06670 PF00270 DEAD/DEAH box helicase SMD_RS06670 PF17757 UvrB interaction domain SMD_RS06670 PF02559 CarD-like/TRCF domain SMD_RS06680 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SMD_RS06685 PF00072 Response regulator receiver domain SMD_RS06685 PF00486 Transcriptional regulatory protein, C terminal SMD_RS06690 PF00672 HAMP domain SMD_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS06690 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS06695 PF06123 Inner membrane protein CreD SMD_RS06705 PF04389 Peptidase family M28 SMD_RS06705 PF02225 PA domain SMD_RS06710 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMD_RS06715 PF01475 Ferric uptake regulator family SMD_RS06720 PF13533 Biotin-lipoyl like SMD_RS06735 PF00593 TonB dependent receptor SMD_RS06735 PF07715 TonB-dependent Receptor Plug Domain SMD_RS06755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMD_RS06755 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMD_RS06760 PF02805 Metal binding domain of Ada SMD_RS06760 PF06029 AlkA N-terminal domain SMD_RS06760 PF00730 HhH-GPD superfamily base excision DNA repair protein SMD_RS06760 PF12833 Helix-turn-helix domain SMD_RS06780 PF01494 FAD binding domain SMD_RS06790 PF00271 Helicase conserved C-terminal domain SMD_RS06790 PF00270 DEAD/DEAH box helicase SMD_RS06790 PF03880 DbpA RNA binding domain SMD_RS06795 PF00563 EAL domain SMD_RS06795 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS06795 PF08448 PAS fold SMD_RS06800 PF00072 Response regulator receiver domain SMD_RS06800 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS06805 PF01479 S4 domain SMD_RS06805 PF00849 RNA pseudouridylate synthase SMD_RS06810 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS06815 PF02463 RecF/RecN/SMC N terminal domain SMD_RS06840 PF07930 D-aminopeptidase, domain B SMD_RS06840 PF00144 Beta-lactamase SMD_RS06845 PF00664 ABC transporter transmembrane region SMD_RS06845 PF00005 ABC transporter SMD_RS06860 PF00328 Histidine phosphatase superfamily (branch 2) SMD_RS06865 PF05426 Alginate lyase SMD_RS06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS06895 PF03466 LysR substrate binding domain SMD_RS06905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMD_RS06910 PF03551 Transcriptional regulator PadR-like family SMD_RS06930 PF03653 Uncharacterised protein family (UPF0093) SMD_RS06935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SMD_RS06945 PF01336 OB-fold nucleic acid binding domain SMD_RS06945 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMD_RS06945 PF02811 PHP domain SMD_RS06945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMD_RS06945 PF14579 Helix-hairpin-helix motif SMD_RS06950 PF01351 Ribonuclease HII SMD_RS06955 PF02684 Lipid-A-disaccharide synthetase SMD_RS06960 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS06960 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SMD_RS06965 PF07977 FabA-like domain SMD_RS06970 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS06970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SMD_RS06975 PF07244 Surface antigen variable number repeat SMD_RS06975 PF01103 Surface antigen SMD_RS06980 PF02163 Peptidase family M50 SMD_RS06980 PF17820 PDZ domain SMD_RS06985 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SMD_RS06985 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SMD_RS06985 PF13288 DXP reductoisomerase C-terminal domain SMD_RS06995 PF01255 Putative undecaprenyl diphosphate synthase SMD_RS07000 PF01765 Ribosome recycling factor SMD_RS07005 PF00696 Amino acid kinase family SMD_RS07010 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS07015 PF00889 Elongation factor TS SMD_RS07020 PF00318 Ribosomal protein S2 SMD_RS07040 PF13953 PapC C-terminal domain SMD_RS07040 PF00577 Outer membrane usher protein SMD_RS07040 PF13954 PapC N-terminal domain SMD_RS07055 PF00557 Metallopeptidase family M24 SMD_RS07060 PF01966 HD domain SMD_RS07060 PF01909 Nucleotidyltransferase domain SMD_RS07060 PF08335 GlnD PII-uridylyltransferase SMD_RS07065 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS07065 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SMD_RS07065 PF14602 Hexapeptide repeat of succinyl-transferase SMD_RS07075 PF03960 ArsC family SMD_RS07080 PF07687 Peptidase dimerisation domain SMD_RS07080 PF01546 Peptidase family M20/M25/M40 SMD_RS07090 PF13537 Glutamine amidotransferase domain SMD_RS07090 PF00733 Asparagine synthase SMD_RS07095 PF00999 Sodium/hydrogen exchanger family SMD_RS07100 PF01804 Penicillin amidase SMD_RS07105 PF00210 Ferritin-like domain SMD_RS07110 PF00521 DNA gyrase/topoisomerase IV, subunit A SMD_RS07110 PF03989 DNA gyrase C-terminal domain, beta-propeller SMD_RS07115 PF12833 Helix-turn-helix domain SMD_RS07125 PF02321 Outer membrane efflux protein SMD_RS07130 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS07130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS07135 PF07690 Major Facilitator Superfamily SMD_RS07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS07145 PF03466 LysR substrate binding domain SMD_RS07165 PF00575 S1 RNA binding domain SMD_RS07165 PF17876 Cold shock domain SMD_RS07165 PF08461 Ribonuclease R winged-helix domain SMD_RS07165 PF08206 Ribonuclease B OB domain SMD_RS07165 PF00773 RNB domain SMD_RS07175 PF00588 SpoU rRNA Methylase family SMD_RS07175 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMD_RS07180 PF02321 Outer membrane efflux protein SMD_RS07185 PF12704 MacB-like periplasmic core domain SMD_RS07185 PF00005 ABC transporter SMD_RS07185 PF02687 FtsX-like permease family SMD_RS07190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS07195 PF00486 Transcriptional regulatory protein, C terminal SMD_RS07195 PF00072 Response regulator receiver domain SMD_RS07200 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS07205 PF00929 Exonuclease SMD_RS07210 PF07681 DoxX SMD_RS07220 PF05114 Protein of unknown function (DUF692) SMD_RS07230 PF01895 PhoU domain SMD_RS07235 PF00005 ABC transporter SMD_RS07240 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS07245 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS07250 PF12849 PBP superfamily domain SMD_RS07255 PF12849 PBP superfamily domain SMD_RS07265 PF00730 HhH-GPD superfamily base excision DNA repair protein SMD_RS07265 PF00633 Helix-hairpin-helix motif SMD_RS07265 PF10576 Iron-sulfur binding domain of endonuclease III SMD_RS07275 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS07280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMD_RS07280 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMD_RS07285 PF00293 NUDIX domain SMD_RS07290 PF00581 Rhodanese-like domain SMD_RS07305 PF10672 S-adenosylmethionine-dependent methyltransferase SMD_RS07305 PF02926 THUMP domain SMD_RS07305 PF01170 Putative RNA methylase family UPF0020 SMD_RS07325 PF04286 Protein of unknown function (DUF445) SMD_RS07335 PF00202 Aminotransferase class-III SMD_RS07340 PF00171 Aldehyde dehydrogenase family SMD_RS07345 PF00083 Sugar (and other) transporter SMD_RS07345 PF07690 Major Facilitator Superfamily SMD_RS07350 PF01814 Hemerythrin HHE cation binding domain SMD_RS07355 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS07355 PF00072 Response regulator receiver domain SMD_RS07375 PF01266 FAD dependent oxidoreductase SMD_RS07380 PF07722 Peptidase C26 SMD_RS07385 PF00120 Glutamine synthetase, catalytic domain SMD_RS07390 PF13416 Bacterial extracellular solute-binding protein SMD_RS07395 PF08402 TOBE domain SMD_RS07395 PF00005 ABC transporter SMD_RS07400 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS07405 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS07410 PF00171 Aldehyde dehydrogenase family SMD_RS07425 PF03471 Transporter associated domain SMD_RS07425 PF00571 CBS domain SMD_RS07440 PF02130 Uncharacterized protein family UPF0054 SMD_RS07445 PF02562 PhoH-like protein SMD_RS07455 PF00005 ABC transporter SMD_RS07465 PF01938 TRAM domain SMD_RS07465 PF04055 Radical SAM superfamily SMD_RS07465 PF00919 Uncharacterized protein family UPF0004 SMD_RS07470 PF13417 Glutathione S-transferase, N-terminal domain SMD_RS07480 PF01464 Transglycosylase SLT domain SMD_RS07485 PF00355 Rieske [2Fe-2S] domain SMD_RS07485 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMD_RS07490 PF00032 Cytochrome b(C-terminal)/b6/petD SMD_RS07490 PF00033 Cytochrome b/b6/petB SMD_RS07495 PF02167 Cytochrome C1 family SMD_RS07500 PF00043 Glutathione S-transferase, C-terminal domain SMD_RS07500 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS07505 PF04386 Stringent starvation protein B SMD_RS07520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMD_RS07520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMD_RS07530 PF00731 AIR carboxylase SMD_RS07535 PF02222 ATP-grasp domain SMD_RS07535 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SMD_RS07540 PF02627 Carboxymuconolactone decarboxylase family SMD_RS07545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMD_RS07545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMD_RS07550 PF00462 Glutaredoxin SMD_RS07560 PF00593 TonB dependent receptor SMD_RS07565 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SMD_RS07565 PF03641 Possible lysine decarboxylase SMD_RS07565 PF11892 Domain of unknown function (DUF3412) SMD_RS07590 PF05567 Neisseria PilC beta-propeller domain SMD_RS07595 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor SMD_RS07595 PF07963 Prokaryotic N-terminal methylation motif SMD_RS07610 PF17757 UvrB interaction domain SMD_RS07610 PF00271 Helicase conserved C-terminal domain SMD_RS07610 PF04851 Type III restriction enzyme, res subunit SMD_RS07610 PF02151 UvrB/uvrC motif SMD_RS07610 PF12344 Ultra-violet resistance protein B SMD_RS07635 PF06629 MltA-interacting protein MipA SMD_RS07640 PF00072 Response regulator receiver domain SMD_RS07640 PF00486 Transcriptional regulatory protein, C terminal SMD_RS07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS07645 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS07650 PF00753 Metallo-beta-lactamase superfamily SMD_RS07650 PF13567 Domain of unknown function (DUF4131) SMD_RS07650 PF03772 Competence protein SMD_RS07655 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS07665 PF00664 ABC transporter transmembrane region SMD_RS07665 PF00005 ABC transporter SMD_RS07670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SMD_RS07675 PF02348 Cytidylyltransferase SMD_RS07680 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMD_RS07690 PF02151 UvrB/uvrC motif SMD_RS07690 PF01541 GIY-YIG catalytic domain SMD_RS07690 PF08459 UvrC Helix-hairpin-helix N-terminal SMD_RS07695 PF01066 CDP-alcohol phosphatidyltransferase SMD_RS07705 PF00665 Integrase core domain SMD_RS07710 PF01695 IstB-like ATP binding protein SMD_RS07735 PF13276 HTH-like domain SMD_RS07735 PF13683 Integrase core domain SMD_RS07740 PF01527 Transposase SMD_RS07745 PF01527 Transposase SMD_RS07750 PF00665 Integrase core domain SMD_RS07750 PF13333 Integrase core domain SMD_RS07750 PF13276 HTH-like domain SMD_RS07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS07760 PF03466 LysR substrate binding domain SMD_RS07770 PF05425 Copper resistance protein D SMD_RS07775 PF04234 CopC domain SMD_RS07795 PF05275 Copper resistance protein B precursor (CopB) SMD_RS07800 PF07732 Multicopper oxidase SMD_RS07800 PF07731 Multicopper oxidase SMD_RS07800 PF00394 Multicopper oxidase SMD_RS07805 PF00486 Transcriptional regulatory protein, C terminal SMD_RS07805 PF00072 Response regulator receiver domain SMD_RS07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS07810 PF00672 HAMP domain SMD_RS07810 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS07815 PF01022 Bacterial regulatory protein, arsR family SMD_RS07830 PF01758 Sodium Bile acid symporter family SMD_RS07835 PF03960 ArsC family SMD_RS07840 PF03551 Transcriptional regulator PadR-like family SMD_RS07860 PF00873 AcrB/AcrD/AcrF family SMD_RS07865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS07915 PF04002 RadC-like JAB domain SMD_RS07970 PF12728 Helix-turn-helix domain SMD_RS07980 PF06480 FtsH Extracellular SMD_RS07980 PF01434 Peptidase family M41 SMD_RS07980 PF17862 AAA+ lid domain SMD_RS07980 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS08090 PF06067 Domain of unknown function (DUF932) SMD_RS08110 PF01526 Tn3 transposase DDE domain SMD_RS08110 PF13700 Domain of unknown function (DUF4158) SMD_RS08110 PF13700 Domain of unknown function (DUF4158) SMD_RS08110 PF01526 Tn3 transposase DDE domain SMD_RS08120 PF00403 Heavy-metal-associated domain SMD_RS08120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMD_RS08120 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS08125 PF00403 Heavy-metal-associated domain SMD_RS08130 PF02411 MerT mercuric transport protein SMD_RS08135 PF09278 MerR, DNA binding SMD_RS08135 PF00376 MerR family regulatory protein SMD_RS08175 PF01252 Signal peptidase (SPase) II SMD_RS08180 PF00403 Heavy-metal-associated domain SMD_RS08185 PF13411 MerR HTH family regulatory protein SMD_RS08200 PF01131 DNA topoisomerase SMD_RS08200 PF01751 Toprim domain SMD_RS08205 PF00436 Single-strand binding protein family SMD_RS08240 PF13614 AAA domain SMD_RS08275 PF02321 Outer membrane efflux protein SMD_RS08285 PF00005 ABC transporter SMD_RS08285 PF12704 MacB-like periplasmic core domain SMD_RS08285 PF02687 FtsX-like permease family SMD_RS08585 PF03747 ADP-ribosylglycohydrolase SMD_RS08605 PF12833 Helix-turn-helix domain SMD_RS08605 PF02311 AraC-like ligand binding domain SMD_RS08610 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMD_RS08630 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SMD_RS08630 PF12801 4Fe-4S binding domain SMD_RS08630 PF13746 4Fe-4S dicluster domain SMD_RS08645 PF04055 Radical SAM superfamily SMD_RS08645 PF06969 HemN C-terminal domain SMD_RS08660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMD_RS08660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMD_RS08660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMD_RS08665 PF01645 Conserved region in glutamate synthase SMD_RS08670 PF13673 Acetyltransferase (GNAT) domain SMD_RS08675 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMD_RS08675 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS08680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMD_RS08690 PF17773 UPF0176 acylphosphatase like domain SMD_RS08690 PF00581 Rhodanese-like domain SMD_RS08695 PF00296 Luciferase-like monooxygenase SMD_RS08710 PF01595 Cyclin M transmembrane N-terminal domain SMD_RS08710 PF03471 Transporter associated domain SMD_RS08710 PF00571 CBS domain SMD_RS08720 PF01384 Phosphate transporter family SMD_RS08730 PF13302 Acetyltransferase (GNAT) domain SMD_RS08735 PF00986 DNA gyrase B subunit, carboxyl terminus SMD_RS08735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS08735 PF01751 Toprim domain SMD_RS08735 PF00204 DNA gyrase B SMD_RS08745 PF00117 Glutamine amidotransferase class-I SMD_RS08745 PF06418 CTP synthase N-terminus SMD_RS08750 PF00793 DAHP synthetase I family SMD_RS08765 PF00113 Enolase, C-terminal TIM barrel domain SMD_RS08765 PF03952 Enolase, N-terminal domain SMD_RS08770 PF04977 Septum formation initiator SMD_RS08775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SMD_RS08780 PF02542 YgbB family SMD_RS08785 PF01142 tRNA pseudouridine synthase D (TruD) SMD_RS08790 PF01713 Smr domain SMD_RS08795 PF01975 Survival protein SurE SMD_RS08810 PF01476 LysM domain SMD_RS08810 PF01551 Peptidase family M23 SMD_RS08820 PF04430 Protein of unknown function (DUF498/DUF598) SMD_RS08825 PF01985 CRS1 / YhbY (CRM) domain SMD_RS08830 PF01728 FtsJ-like methyltransferase SMD_RS08835 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS08835 PF17862 AAA+ lid domain SMD_RS08835 PF01434 Peptidase family M41 SMD_RS08835 PF06480 FtsH Extracellular SMD_RS08845 PF00809 Pterin binding enzyme SMD_RS08855 PF17209 Hfq protein SMD_RS08860 PF01926 50S ribosome-binding GTPase SMD_RS08860 PF13167 GTP-binding GTPase N-terminal SMD_RS08860 PF16360 GTP-binding GTPase Middle Region SMD_RS08865 PF02464 Competence-damaged protein SMD_RS08870 PF03109 ABC1 family SMD_RS08875 PF00717 Peptidase S24-like SMD_RS08875 PF01726 LexA DNA binding domain SMD_RS08880 PF00154 recA bacterial DNA recombination protein SMD_RS08885 PF02631 RecX family SMD_RS08890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMD_RS08890 PF02272 DHHA1 domain SMD_RS08890 PF01411 tRNA synthetases class II (A) SMD_RS08895 PF02599 Global regulator protein family SMD_RS08915 PF00456 Transketolase, thiamine diphosphate binding domain SMD_RS08915 PF17831 Pyruvate dehydrogenase E1 component middle domain SMD_RS08935 PF16655 PhoD-like phosphatase, N-terminal domain SMD_RS08935 PF09423 PhoD-like phosphatase SMD_RS08940 PF04185 Phosphoesterase family SMD_RS08940 PF05506 Domain of unknown function (DUF756) SMD_RS08945 PF00593 TonB dependent receptor SMD_RS08945 PF07715 TonB-dependent Receptor Plug Domain SMD_RS08950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMD_RS08955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMD_RS08955 PF00034 Cytochrome c SMD_RS08965 PF07690 Major Facilitator Superfamily SMD_RS08975 PF02678 Pirin SMD_RS08975 PF17954 Quercetinase C-terminal cupin domain SMD_RS08980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS08980 PF03466 LysR substrate binding domain SMD_RS09005 PF08543 Phosphomethylpyrimidine kinase SMD_RS09005 PF02581 Thiamine monophosphate synthase SMD_RS09020 PF02562 PhoH-like protein SMD_RS09020 PF13638 PIN domain SMD_RS09025 PF00578 AhpC/TSA family SMD_RS09035 PF00701 Dihydrodipicolinate synthetase family SMD_RS09045 PF00037 4Fe-4S binding domain SMD_RS09045 PF11953 Domain of unknown function (DUF3470) SMD_RS09050 PF00083 Sugar (and other) transporter SMD_RS09060 PF12627 Probable RNA and SrmB- binding site of polymerase A SMD_RS09060 PF12626 Polymerase A arginine-rich C-terminus SMD_RS09060 PF01743 Poly A polymerase head domain SMD_RS09065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMD_RS09070 PF02548 Ketopantoate hydroxymethyltransferase SMD_RS09075 PF02569 Pantoate-beta-alanine ligase SMD_RS09080 PF02261 Aspartate decarboxylase SMD_RS09085 PF00342 Phosphoglucose isomerase SMD_RS09090 PF02954 Bacterial regulatory protein, Fis family SMD_RS09090 PF00072 Response regulator receiver domain SMD_RS09095 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS09095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS09100 PF04551 GcpE protein SMD_RS09105 PF01569 PAP2 superfamily SMD_RS09110 PF00072 Response regulator receiver domain SMD_RS09110 PF00196 Bacterial regulatory proteins, luxR family SMD_RS09115 PF01081 KDPG and KHG aldolase SMD_RS09120 PF00920 Dehydratase family SMD_RS09125 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SMD_RS09130 PF02685 Glucokinase SMD_RS09135 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SMD_RS09135 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SMD_RS09140 PF17912 MalK OB fold domain SMD_RS09140 PF00005 ABC transporter SMD_RS09150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMD_RS09155 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMD_RS09160 PF02910 Fumarate reductase flavoprotein C-term SMD_RS09160 PF00890 FAD binding domain SMD_RS09165 PF13237 4Fe-4S dicluster domain SMD_RS09165 PF13085 2Fe-2S iron-sulfur cluster binding domain SMD_RS09170 PF03937 Flavinator of succinate dehydrogenase SMD_RS09180 PF02687 FtsX-like permease family SMD_RS09180 PF12704 MacB-like periplasmic core domain SMD_RS09185 PF00005 ABC transporter SMD_RS09195 PF04362 Bacterial Fe(2+) trafficking SMD_RS09200 PF10576 Iron-sulfur binding domain of endonuclease III SMD_RS09200 PF14815 NUDIX domain SMD_RS09200 PF00633 Helix-hairpin-helix motif SMD_RS09200 PF00730 HhH-GPD superfamily base excision DNA repair protein SMD_RS09205 PF02881 SRP54-type protein, helical bundle domain SMD_RS09205 PF00448 SRP54-type protein, GTPase domain SMD_RS09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS09215 PF00183 Hsp90 protein SMD_RS09225 PF01467 Cytidylyltransferase-like SMD_RS09235 PF00037 4Fe-4S binding domain SMD_RS09245 PF00753 Metallo-beta-lactamase superfamily SMD_RS09285 PF00719 Inorganic pyrophosphatase SMD_RS09290 PF00875 DNA photolyase SMD_RS09290 PF03441 FAD binding domain of DNA photolyase SMD_RS09295 PF00691 OmpA family SMD_RS09295 PF13488 Glycine zipper SMD_RS09300 PF03466 LysR substrate binding domain SMD_RS09300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS09315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS09320 PF00873 AcrB/AcrD/AcrF family SMD_RS09325 PF00106 short chain dehydrogenase SMD_RS09330 PF02321 Outer membrane efflux protein SMD_RS09365 PF00067 Cytochrome P450 SMD_RS09405 PF01527 Transposase SMD_RS09410 PF13683 Integrase core domain SMD_RS09410 PF13276 HTH-like domain SMD_RS09420 PF13356 Arm DNA-binding domain SMD_RS09420 PF00589 Phage integrase family SMD_RS09430 PF00583 Acetyltransferase (GNAT) family SMD_RS09435 PF01668 SmpB protein SMD_RS09440 PF03364 Polyketide cyclase / dehydrase and lipid transport SMD_RS09445 PF03658 RnfH family Ubiquitin SMD_RS09450 PF04355 SmpA / OmlA family SMD_RS09455 PF01475 Ferric uptake regulator family SMD_RS09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS09465 PF03466 LysR substrate binding domain SMD_RS09470 PF02463 RecF/RecN/SMC N terminal domain SMD_RS09475 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SMD_RS09475 PF01628 HrcA protein C terminal domain SMD_RS09480 PF01025 GrpE SMD_RS09485 PF00012 Hsp70 protein SMD_RS09490 PF01556 DnaJ C terminal domain SMD_RS09490 PF00226 DnaJ domain SMD_RS09490 PF00684 DnaJ central domain SMD_RS09495 PF12833 Helix-turn-helix domain SMD_RS09495 PF02311 AraC-like ligand binding domain SMD_RS09500 PF07690 Major Facilitator Superfamily SMD_RS09505 PF08543 Phosphomethylpyrimidine kinase SMD_RS09510 PF01817 Chorismate mutase type II SMD_RS09510 PF02153 Prephenate dehydrogenase SMD_RS09520 PF00664 ABC transporter transmembrane region SMD_RS09520 PF00005 ABC transporter SMD_RS09525 PF01205 Uncharacterized protein family UPF0029 SMD_RS09535 PF04542 Sigma-70 region 2 SMD_RS09535 PF04545 Sigma-70, region 4 SMD_RS09540 PF08448 PAS fold SMD_RS09540 PF08447 PAS fold SMD_RS09540 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS09540 PF00563 EAL domain SMD_RS09545 PF03641 Possible lysine decarboxylase SMD_RS09550 PF00202 Aminotransferase class-III SMD_RS09555 PF02547 Queuosine biosynthesis protein SMD_RS09560 PF01702 Queuine tRNA-ribosyltransferase SMD_RS09565 PF02699 Preprotein translocase subunit SMD_RS09570 PF07549 SecD/SecF GG Motif SMD_RS09570 PF02355 Protein export membrane protein SMD_RS09570 PF13721 SecD export protein N-terminal TM region SMD_RS09575 PF02355 Protein export membrane protein SMD_RS09575 PF07549 SecD/SecF GG Motif SMD_RS09580 PF07055 Enoyl reductase FAD binding domain SMD_RS09580 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SMD_RS09580 PF12241 Trans-2-enoyl-CoA reductase catalytic region SMD_RS09585 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS09585 PF00563 EAL domain SMD_RS09585 PF00072 Response regulator receiver domain SMD_RS09595 PF07152 YaeQ protein SMD_RS09600 PF00849 RNA pseudouridylate synthase SMD_RS09605 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SMD_RS09610 PF00313 'Cold-shock' DNA-binding domain SMD_RS09615 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS09620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SMD_RS09625 PF00156 Phosphoribosyl transferase domain SMD_RS09630 PF03880 DbpA RNA binding domain SMD_RS09630 PF00271 Helicase conserved C-terminal domain SMD_RS09630 PF00270 DEAD/DEAH box helicase SMD_RS09635 PF03601 Conserved hypothetical protein 698 SMD_RS09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS09640 PF03466 LysR substrate binding domain SMD_RS09645 PF12848 ABC transporter SMD_RS09645 PF16326 ABC transporter C-terminal domain SMD_RS09645 PF00005 ABC transporter SMD_RS09650 PF00034 Cytochrome c SMD_RS09660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS09665 PF00873 AcrB/AcrD/AcrF family SMD_RS09670 PF00873 AcrB/AcrD/AcrF family SMD_RS09685 PF00795 Carbon-nitrogen hydrolase SMD_RS09690 PF04371 Porphyromonas-type peptidyl-arginine deiminase SMD_RS09700 PF00444 Ribosomal protein L36 SMD_RS09705 PF02224 Cytidylate kinase SMD_RS09710 PF00575 S1 RNA binding domain SMD_RS09715 PF00216 Bacterial DNA-binding protein SMD_RS09725 PF18073 Rubredoxin metal binding domain SMD_RS09730 PF00953 Glycosyl transferase family 4 SMD_RS09735 PF02719 Polysaccharide biosynthesis protein SMD_RS09740 PF00483 Nucleotidyl transferase SMD_RS09745 PF02803 Thiolase, C-terminal domain SMD_RS09745 PF00108 Thiolase, N-terminal domain SMD_RS09750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMD_RS09750 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS09750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMD_RS09760 PF00334 Nucleoside diphosphate kinase SMD_RS09765 PF04055 Radical SAM superfamily SMD_RS09775 PF13464 Domain of unknown function (DUF4115) SMD_RS09775 PF13464 Domain of unknown function (DUF4115) SMD_RS09780 PF09976 Tetratricopeptide repeat-like domain SMD_RS09785 PF13360 PQQ-like domain SMD_RS09785 PF01011 PQQ enzyme repeat SMD_RS09790 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SMD_RS09790 PF01926 50S ribosome-binding GTPase SMD_RS09795 PF00899 ThiF family SMD_RS09800 PF02254 TrkA-N domain SMD_RS09800 PF00999 Sodium/hydrogen exchanger family SMD_RS09805 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMD_RS09805 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMD_RS09810 PF00478 IMP dehydrogenase / GMP reductase domain SMD_RS09810 PF00571 CBS domain SMD_RS09820 PF02540 NAD synthase SMD_RS09820 PF00117 Glutamine amidotransferase class-I SMD_RS09820 PF00958 GMP synthase C terminal domain SMD_RS09825 PF04851 Type III restriction enzyme, res subunit SMD_RS09825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SMD_RS09825 PF08463 EcoEI R protein C-terminal SMD_RS09825 PF00271 Helicase conserved C-terminal domain SMD_RS09830 PF12161 HsdM N-terminal domain SMD_RS09830 PF02384 N-6 DNA Methylase SMD_RS09855 PF03466 LysR substrate binding domain SMD_RS09855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS09890 PF00106 short chain dehydrogenase SMD_RS09905 PF12697 Alpha/beta hydrolase family SMD_RS09920 PF01022 Bacterial regulatory protein, arsR family SMD_RS09935 PF01494 FAD binding domain SMD_RS09945 PF06100 MCRA family SMD_RS09950 PF00106 short chain dehydrogenase SMD_RS09955 PF12833 Helix-turn-helix domain SMD_RS09955 PF06719 AraC-type transcriptional regulator N-terminus SMD_RS09980 PF01965 DJ-1/PfpI family SMD_RS09985 PF07715 TonB-dependent Receptor Plug Domain SMD_RS09985 PF00593 TonB dependent receptor SMD_RS09990 PF03358 NADPH-dependent FMN reductase SMD_RS10000 PF00296 Luciferase-like monooxygenase SMD_RS10005 PF00296 Luciferase-like monooxygenase SMD_RS10010 PF07687 Peptidase dimerisation domain SMD_RS10010 PF01546 Peptidase family M20/M25/M40 SMD_RS10015 PF00583 Acetyltransferase (GNAT) family SMD_RS10020 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS10025 PF00005 ABC transporter SMD_RS10030 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMD_RS10040 PF12706 Beta-lactamase superfamily domain SMD_RS10045 PF08361 MAATS-type transcriptional repressor, C-terminal region SMD_RS10045 PF00440 Bacterial regulatory proteins, tetR family SMD_RS10050 PF12792 CSS motif domain associated with EAL SMD_RS10050 PF00563 EAL domain SMD_RS10075 PF01636 Phosphotransferase enzyme family SMD_RS10080 PF17932 Tetracyclin repressor-like, C-terminal domain SMD_RS10080 PF00440 Bacterial regulatory proteins, tetR family SMD_RS10095 PF00892 EamA-like transporter family SMD_RS10100 PF01565 FAD binding domain SMD_RS10100 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SMD_RS10105 PF01180 Dihydroorotate dehydrogenase SMD_RS10125 PF00171 Aldehyde dehydrogenase family SMD_RS10155 PF00072 Response regulator receiver domain SMD_RS10160 PF00072 Response regulator receiver domain SMD_RS10160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10160 PF13426 PAS domain SMD_RS10165 PF00672 HAMP domain SMD_RS10165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10165 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMD_RS10165 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS10165 PF00072 Response regulator receiver domain SMD_RS10165 PF01627 Hpt domain SMD_RS10170 PF01739 CheR methyltransferase, SAM binding domain SMD_RS10170 PF03705 CheR methyltransferase, all-alpha domain SMD_RS10175 PF01339 CheB methylesterase SMD_RS10180 PF00486 Transcriptional regulatory protein, C terminal SMD_RS10180 PF00072 Response regulator receiver domain SMD_RS10190 PF01022 Bacterial regulatory protein, arsR family SMD_RS10225 PF00742 Homoserine dehydrogenase SMD_RS10225 PF03447 Homoserine dehydrogenase, NAD binding domain SMD_RS10225 PF01842 ACT domain SMD_RS10225 PF00696 Amino acid kinase family SMD_RS10225 PF13840 ACT domain SMD_RS10230 PF08544 GHMP kinases C terminal SMD_RS10230 PF00288 GHMP kinases N terminal domain SMD_RS10235 PF14821 Threonine synthase N terminus SMD_RS10235 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS10240 PF13545 Crp-like helix-turn-helix domain SMD_RS10240 PF00027 Cyclic nucleotide-binding domain SMD_RS10245 PF13393 Histidyl-tRNA synthetase SMD_RS10245 PF03129 Anticodon binding domain SMD_RS10260 PF08029 HisG, C-terminal domain SMD_RS10260 PF01634 ATP phosphoribosyltransferase SMD_RS10265 PF00815 Histidinol dehydrogenase SMD_RS10270 PF00155 Aminotransferase class I and II SMD_RS10275 PF00475 Imidazoleglycerol-phosphate dehydratase SMD_RS10275 PF08645 Polynucleotide kinase 3 phosphatase SMD_RS10280 PF00117 Glutamine amidotransferase class-I SMD_RS10285 PF00977 Histidine biosynthesis protein SMD_RS10290 PF00977 Histidine biosynthesis protein SMD_RS10295 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SMD_RS10295 PF01502 Phosphoribosyl-AMP cyclohydrolase SMD_RS10310 PF02685 Glucokinase SMD_RS10315 PF01112 Asparaginase SMD_RS10320 PF03932 CutC family SMD_RS10325 PF07715 TonB-dependent Receptor Plug Domain SMD_RS10325 PF00593 TonB dependent receptor SMD_RS10330 PF00403 Heavy-metal-associated domain SMD_RS10335 PF00376 MerR family regulatory protein SMD_RS10335 PF09278 MerR, DNA binding SMD_RS10350 PF17678 Glycosyl hydrolase family 92 N-terminal domain SMD_RS10350 PF07971 Glycosyl hydrolase family 92 SMD_RS10355 PF00356 Bacterial regulatory proteins, lacI family SMD_RS10360 PF07690 Major Facilitator Superfamily SMD_RS10365 PF00294 pfkB family carbohydrate kinase SMD_RS10385 PF03079 ARD/ARD' family SMD_RS10390 PF00596 Class II Aldolase and Adducin N-terminal domain SMD_RS10395 PF13520 Amino acid permease SMD_RS10400 PF13520 Amino acid permease SMD_RS10410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMD_RS10410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMD_RS10415 PF01565 FAD binding domain SMD_RS10415 PF02913 FAD linked oxidases, C-terminal domain SMD_RS10430 PF00672 HAMP domain SMD_RS10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10430 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS10435 PF00486 Transcriptional regulatory protein, C terminal SMD_RS10435 PF00072 Response regulator receiver domain SMD_RS10440 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS10440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS10445 PF00873 AcrB/AcrD/AcrF family SMD_RS10460 PF09285 Elongation factor P, C-terminal SMD_RS10460 PF01132 Elongation factor P (EF-P) OB domain SMD_RS10460 PF08207 Elongation factor P (EF-P) KOW-like domain SMD_RS10465 PF00106 short chain dehydrogenase SMD_RS10470 PF00682 HMGL-like SMD_RS10480 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS10480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMD_RS10480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMD_RS10490 PF07670 Nucleoside recognition SMD_RS10490 PF07664 Ferrous iron transport protein B C terminus SMD_RS10490 PF02421 Ferrous iron transport protein B SMD_RS10505 PF02525 Flavodoxin-like fold SMD_RS10515 PF00106 short chain dehydrogenase SMD_RS10520 PF05173 Dihydrodipicolinate reductase, C-terminus SMD_RS10520 PF01113 Dihydrodipicolinate reductase, N-terminus SMD_RS10525 PF00117 Glutamine amidotransferase class-I SMD_RS10525 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SMD_RS10530 PF02142 MGS-like domain SMD_RS10530 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SMD_RS10530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMD_RS10535 PF03449 Transcription elongation factor, N-terminal SMD_RS10535 PF01272 Transcription elongation factor, GreA/GreB, C-term SMD_RS10550 PF01368 DHH family SMD_RS10550 PF02272 DHHA1 domain SMD_RS10550 PF17768 RecJ OB domain SMD_RS10555 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SMD_RS10565 PF04397 LytTr DNA-binding domain SMD_RS10570 PF00472 RF-1 domain SMD_RS10570 PF03462 PCRF domain SMD_RS10580 PF00171 Aldehyde dehydrogenase family SMD_RS10585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMD_RS10585 PF00205 Thiamine pyrophosphate enzyme, central domain SMD_RS10585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMD_RS10590 PF01336 OB-fold nucleic acid binding domain SMD_RS10590 PF00152 tRNA synthetases class II (D, K and N) SMD_RS10595 PF00072 Response regulator receiver domain SMD_RS10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10600 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS10600 PF01627 Hpt domain SMD_RS10600 PF00072 Response regulator receiver domain SMD_RS10605 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS10610 PF13193 AMP-binding enzyme C-terminal domain SMD_RS10610 PF00501 AMP-binding enzyme SMD_RS10615 PF05199 GMC oxidoreductase SMD_RS10615 PF00732 GMC oxidoreductase SMD_RS10620 PF00171 Aldehyde dehydrogenase family SMD_RS10625 PF13977 BetI-type transcriptional repressor, C-terminal SMD_RS10625 PF00440 Bacterial regulatory proteins, tetR family SMD_RS10630 PF02028 BCCT, betaine/carnitine/choline family transporter SMD_RS10635 PF00330 Aconitase family (aconitate hydratase) SMD_RS10635 PF00694 Aconitase C-terminal domain SMD_RS10650 PF11791 Aconitate B N-terminal domain SMD_RS10650 PF00330 Aconitase family (aconitate hydratase) SMD_RS10650 PF06434 Aconitate hydratase 2 N-terminus SMD_RS10660 PF00072 Response regulator receiver domain SMD_RS10660 PF01339 CheB methylesterase SMD_RS10665 PF03975 CheD chemotactic sensory transduction SMD_RS10670 PF03705 CheR methyltransferase, all-alpha domain SMD_RS10670 PF01739 CheR methyltransferase, SAM binding domain SMD_RS10675 PF00672 HAMP domain SMD_RS10675 PF02203 Tar ligand binding domain homologue SMD_RS10675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS10680 PF00672 HAMP domain SMD_RS10680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS10680 PF02203 Tar ligand binding domain homologue SMD_RS10690 PF01584 CheW-like domain SMD_RS10695 PF07238 PilZ domain SMD_RS10695 PF07317 Flagellar regulator YcgR SMD_RS10700 PF00672 HAMP domain SMD_RS10700 PF02203 Tar ligand binding domain homologue SMD_RS10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS10705 PF01627 Hpt domain SMD_RS10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10705 PF02895 Signal transducing histidine kinase, homodimeric domain SMD_RS10705 PF09078 CheY binding SMD_RS10705 PF01584 CheW-like domain SMD_RS10710 PF00072 Response regulator receiver domain SMD_RS10720 PF01584 CheW-like domain SMD_RS10725 PF13614 AAA domain SMD_RS10730 PF00691 OmpA family SMD_RS10730 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMD_RS10735 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS10740 PF01584 CheW-like domain SMD_RS10740 PF02895 Signal transducing histidine kinase, homodimeric domain SMD_RS10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10740 PF01627 Hpt domain SMD_RS10740 PF00072 Response regulator receiver domain SMD_RS10745 PF04344 Chemotaxis phosphatase, CheZ SMD_RS10750 PF00072 Response regulator receiver domain SMD_RS10755 PF04545 Sigma-70, region 4 SMD_RS10755 PF04539 Sigma-70 region 3 SMD_RS10755 PF04542 Sigma-70 region 2 SMD_RS10760 PF10609 NUBPL iron-transfer P-loop NTPase SMD_RS10765 PF00448 SRP54-type protein, GTPase domain SMD_RS10770 PF00771 FHIPEP family SMD_RS10775 PF01312 FlhB HrpN YscU SpaS Family SMD_RS10780 PF00563 EAL domain SMD_RS10780 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS10780 PF03707 Bacterial signalling protein N terminal repeat SMD_RS10785 PF01311 Bacterial export proteins, family 1 SMD_RS10790 PF01313 Bacterial export proteins, family 3 SMD_RS10795 PF00813 FliP family SMD_RS10800 PF04347 Flagellar biosynthesis protein, FliO SMD_RS10805 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMD_RS10810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMD_RS10810 PF02154 Flagellar motor switch protein FliM SMD_RS10830 PF18269 T3SS EscN ATPase C-terminal domain SMD_RS10830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMD_RS10840 PF14841 FliG middle domain SMD_RS10840 PF14842 FliG N-terminal domain SMD_RS10840 PF01706 FliG C-terminal domain SMD_RS10845 PF01514 Secretory protein of YscJ/FliF family SMD_RS10845 PF08345 Flagellar M-ring protein C-terminal SMD_RS10850 PF02049 Flagellar hook-basal body complex protein FliE SMD_RS10860 PF06490 Flagellar regulatory protein FleQ SMD_RS10860 PF02954 Bacterial regulatory protein, Fis family SMD_RS10860 PF00158 Sigma-54 interaction domain SMD_RS10865 PF00196 Bacterial regulatory proteins, luxR family SMD_RS10865 PF00072 Response regulator receiver domain SMD_RS10870 PF04552 Sigma-54, DNA binding domain SMD_RS10870 PF04963 Sigma-54 factor, core binding domain SMD_RS10870 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMD_RS10875 PF00196 Bacterial regulatory proteins, luxR family SMD_RS10875 PF00072 Response regulator receiver domain SMD_RS10890 PF02561 Flagellar protein FliS SMD_RS10895 PF07195 Flagellar hook-associated protein 2 C-terminus SMD_RS10895 PF02465 Flagellar hook-associated protein 2 N-terminus SMD_RS10900 PF00700 Bacterial flagellin C-terminal helical region SMD_RS10900 PF00669 Bacterial flagellin N-terminal helical region SMD_RS10905 PF00669 Bacterial flagellin N-terminal helical region SMD_RS10905 PF00700 Bacterial flagellin C-terminal helical region SMD_RS10910 PF00700 Bacterial flagellin C-terminal helical region SMD_RS10910 PF00669 Bacterial flagellin N-terminal helical region SMD_RS10920 PF00460 Flagella basal body rod protein SMD_RS10920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMD_RS10925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SMD_RS10925 PF10135 Rod binding protein SMD_RS10930 PF02119 Flagellar P-ring protein SMD_RS10935 PF02107 Flagellar L-ring protein SMD_RS10940 PF00460 Flagella basal body rod protein SMD_RS10940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMD_RS10945 PF00460 Flagella basal body rod protein SMD_RS10945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMD_RS10950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMD_RS10950 PF00460 Flagella basal body rod protein SMD_RS10950 PF07559 Flagellar basal body protein FlaE SMD_RS10960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMD_RS10960 PF00460 Flagella basal body rod protein SMD_RS10965 PF00460 Flagella basal body rod protein SMD_RS10970 PF00072 Response regulator receiver domain SMD_RS10970 PF01584 CheW-like domain SMD_RS10990 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS10990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS10990 PF13426 PAS domain SMD_RS10990 PF13188 PAS domain SMD_RS10990 PF00989 PAS fold SMD_RS10995 PF03707 Bacterial signalling protein N terminal repeat SMD_RS10995 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS10995 PF00563 EAL domain SMD_RS11000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11000 PF07730 Histidine kinase SMD_RS11005 PF00563 EAL domain SMD_RS11005 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS11005 PF03707 Bacterial signalling protein N terminal repeat SMD_RS11020 PF00672 HAMP domain SMD_RS11020 PF12729 Four helix bundle sensory module for signal transduction SMD_RS11020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS11025 PF04356 Protein of unknown function (DUF489) SMD_RS11035 PF00293 NUDIX domain SMD_RS11045 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMD_RS11050 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase SMD_RS11055 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS11055 PF17871 AAA lid domain SMD_RS11055 PF10431 C-terminal, D2-small domain, of ClpB protein SMD_RS11055 PF07724 AAA domain (Cdc48 subfamily) SMD_RS11055 PF02861 Clp amino terminal domain, pathogenicity island component SMD_RS11065 PF01176 Translation initiation factor 1A / IF-1 SMD_RS11070 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SMD_RS11080 PF08239 Bacterial SH3 domain SMD_RS11080 PF01520 N-acetylmuramoyl-L-alanine amidase SMD_RS11085 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS11090 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SMD_RS11090 PF17854 FtsK alpha domain SMD_RS11090 PF09397 Ftsk gamma domain SMD_RS11090 PF01580 FtsK/SpoIIIE family SMD_RS11100 PF03548 Outer membrane lipoprotein carrier protein LolA SMD_RS11105 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS11105 PF12002 MgsA AAA+ ATPase C terminal SMD_RS11105 PF16193 AAA C-terminal domain SMD_RS11110 PF05656 Protein of unknown function (DUF805) SMD_RS11120 PF00756 Putative esterase SMD_RS11130 PF01497 Periplasmic binding protein SMD_RS11135 PF01032 FecCD transport family SMD_RS11140 PF00005 ABC transporter SMD_RS11150 PF14492 Elongation Factor G, domain II SMD_RS11150 PF03764 Elongation factor G, domain IV SMD_RS11150 PF00009 Elongation factor Tu GTP binding domain SMD_RS11150 PF03144 Elongation factor Tu domain 2 SMD_RS11150 PF00679 Elongation factor G C-terminus SMD_RS11165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11165 PF09308 LuxQ, periplasmic SMD_RS11165 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS11165 PF00072 Response regulator receiver domain SMD_RS11185 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS11185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS11190 PF00873 AcrB/AcrD/AcrF family SMD_RS11205 PF01252 Signal peptidase (SPase) II SMD_RS11220 PF00873 AcrB/AcrD/AcrF family SMD_RS11240 PF00403 Heavy-metal-associated domain SMD_RS11245 PF03239 Iron permease FTR1 family SMD_RS11250 PF09278 MerR, DNA binding SMD_RS11250 PF00376 MerR family regulatory protein SMD_RS11255 PF02540 NAD synthase SMD_RS11255 PF00795 Carbon-nitrogen hydrolase SMD_RS11265 PF01526 Tn3 transposase DDE domain SMD_RS11265 PF13700 Domain of unknown function (DUF4158) SMD_RS11275 PF00196 Bacterial regulatory proteins, luxR family SMD_RS11275 PF00072 Response regulator receiver domain SMD_RS11315 PF01593 Flavin containing amine oxidoreductase SMD_RS11330 PF08281 Sigma-70, region 4 SMD_RS11330 PF04542 Sigma-70 region 2 SMD_RS11340 PF13460 NAD(P)H-binding SMD_RS11345 PF13188 PAS domain SMD_RS11345 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS11345 PF08448 PAS fold SMD_RS11345 PF00072 Response regulator receiver domain SMD_RS11345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11350 PF00072 Response regulator receiver domain SMD_RS11355 PF08446 PAS fold SMD_RS11355 PF00360 Phytochrome region SMD_RS11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11355 PF01590 GAF domain SMD_RS11355 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS11365 PF03073 TspO/MBR family SMD_RS11380 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11455 PF00069 Protein kinase domain SMD_RS11455 PF03793 PASTA domain SMD_RS11470 PF01119 DNA mismatch repair protein, C-terminal domain SMD_RS11470 PF08676 MutL C terminal dimerisation domain SMD_RS11485 PF12804 MobA-like NTP transferase domain SMD_RS11490 PF02625 XdhC and CoxI family SMD_RS11490 PF13478 XdhC Rossmann domain SMD_RS11495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMD_RS11495 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMD_RS11500 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMD_RS11500 PF00941 FAD binding domain in molybdopterin dehydrogenase SMD_RS11505 PF01799 [2Fe-2S] binding domain SMD_RS11505 PF00111 2Fe-2S iron-sulfur cluster binding domain SMD_RS11505 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMD_RS11525 PF00561 alpha/beta hydrolase fold SMD_RS11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS11530 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS11530 PF01590 GAF domain SMD_RS11530 PF08446 PAS fold SMD_RS11530 PF00360 Phytochrome region SMD_RS11535 PF12833 Helix-turn-helix domain SMD_RS11535 PF01965 DJ-1/PfpI family SMD_RS11540 PF00106 short chain dehydrogenase SMD_RS11545 PF17755 UvrA DNA-binding domain SMD_RS11560 PF00355 Rieske [2Fe-2S] domain SMD_RS11575 PF04679 ATP dependent DNA ligase C terminal region SMD_RS11575 PF01068 ATP dependent DNA ligase domain SMD_RS11575 PF13298 DNA polymerase Ligase (LigD) SMD_RS11580 PF05974 Domain of unknown function (DUF892) SMD_RS11585 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SMD_RS11585 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SMD_RS11605 PF05067 Manganese containing catalase SMD_RS11610 PF05974 Domain of unknown function (DUF892) SMD_RS11640 PF00398 Ribosomal RNA adenine dimethylase SMD_RS11660 PF00107 Zinc-binding dehydrogenase SMD_RS11660 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS11660 PF13823 Alcohol dehydrogenase GroES-associated SMD_RS11690 PF00356 Bacterial regulatory proteins, lacI family SMD_RS11695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SMD_RS11695 PF00381 PTS HPr component phosphorylation site SMD_RS11695 PF02896 PEP-utilising enzyme, TIM barrel domain SMD_RS11695 PF00391 PEP-utilising enzyme, mobile domain SMD_RS11695 PF05524 PEP-utilising enzyme, N-terminal SMD_RS11700 PF00294 pfkB family carbohydrate kinase SMD_RS11705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SMD_RS11720 PF04616 Glycosyl hydrolases family 43 SMD_RS11730 PF07691 PA14 domain SMD_RS11730 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMD_RS11730 PF00933 Glycosyl hydrolase family 3 N terminal domain SMD_RS11730 PF14310 Fibronectin type III-like domain SMD_RS11735 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SMD_RS11735 PF04616 Glycosyl hydrolases family 43 SMD_RS11745 PF07477 Glycosyl hydrolase family 67 C-terminus SMD_RS11745 PF07488 Glycosyl hydrolase family 67 middle domain SMD_RS11745 PF03648 Glycosyl hydrolase family 67 N-terminus SMD_RS11750 PF00356 Bacterial regulatory proteins, lacI family SMD_RS11755 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMD_RS11755 PF00933 Glycosyl hydrolase family 3 N terminal domain SMD_RS11755 PF14310 Fibronectin type III-like domain SMD_RS11760 PF00083 Sugar (and other) transporter SMD_RS11770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMD_RS11770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMD_RS11775 PF04820 Tryptophan halogenase SMD_RS11800 PF00144 Beta-lactamase SMD_RS11805 PF03600 Citrate transporter SMD_RS11815 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS11820 PF00005 ABC transporter SMD_RS11830 PF04303 PrpF protein SMD_RS11835 PF03466 LysR substrate binding domain SMD_RS11835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS11855 PF00144 Beta-lactamase SMD_RS11860 PF02219 Methylenetetrahydrofolate reductase SMD_RS11865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS11865 PF03466 LysR substrate binding domain SMD_RS11870 PF03358 NADPH-dependent FMN reductase SMD_RS11880 PF01717 Cobalamin-independent synthase, Catalytic domain SMD_RS11880 PF08267 Cobalamin-independent synthase, N-terminal domain SMD_RS11935 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS11955 PF03466 LysR substrate binding domain SMD_RS11980 PF02954 Bacterial regulatory protein, Fis family SMD_RS11980 PF00072 Response regulator receiver domain SMD_RS11980 PF00158 Sigma-54 interaction domain SMD_RS12060 PF02954 Bacterial regulatory protein, Fis family SMD_RS12060 PF00158 Sigma-54 interaction domain SMD_RS12060 PF00072 Response regulator receiver domain SMD_RS12095 PF02245 Methylpurine-DNA glycosylase (MPG) SMD_RS12105 PF03707 Bacterial signalling protein N terminal repeat SMD_RS12105 PF00563 EAL domain SMD_RS12105 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS12110 PF03372 Endonuclease/Exonuclease/phosphatase family SMD_RS12115 PF00128 Alpha amylase, catalytic domain SMD_RS12115 PF16657 Maltogenic Amylase, C-terminal domain SMD_RS12120 PF00296 Luciferase-like monooxygenase SMD_RS12140 PF12704 MacB-like periplasmic core domain SMD_RS12140 PF02687 FtsX-like permease family SMD_RS12140 PF00005 ABC transporter SMD_RS12145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS12155 PF00072 Response regulator receiver domain SMD_RS12155 PF00486 Transcriptional regulatory protein, C terminal SMD_RS12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS12160 PF00672 HAMP domain SMD_RS12160 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS12170 PF06224 Winged helix DNA-binding domain SMD_RS12180 PF00593 TonB dependent receptor SMD_RS12180 PF07715 TonB-dependent Receptor Plug Domain SMD_RS12195 PF00561 alpha/beta hydrolase fold SMD_RS12205 PF16967 E-set like domain SMD_RS12205 PF15976 CS1-pili formation C-terminal SMD_RS12230 PF00690 Cation transporter/ATPase, N-terminus SMD_RS12230 PF00689 Cation transporting ATPase, C-terminus SMD_RS12235 PF02308 MgtC family SMD_RS12240 PF00989 PAS fold SMD_RS12240 PF13493 Domain of unknown function (DUF4118) SMD_RS12240 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS12240 PF08447 PAS fold SMD_RS12240 PF13426 PAS domain SMD_RS12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS12245 PF00072 Response regulator receiver domain SMD_RS12245 PF00196 Bacterial regulatory proteins, luxR family SMD_RS12260 PF00892 EamA-like transporter family SMD_RS12280 PF06772 Bacterial low temperature requirement A protein (LtrA) SMD_RS12290 PF00753 Metallo-beta-lactamase superfamily SMD_RS12305 PF00384 Molybdopterin oxidoreductase SMD_RS12310 PF02634 FdhD/NarQ family SMD_RS12330 PF07690 Major Facilitator Superfamily SMD_RS12355 PF00005 ABC transporter SMD_RS12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS12370 PF03466 LysR substrate binding domain SMD_RS12375 PF00248 Aldo/keto reductase family SMD_RS12400 PF05425 Copper resistance protein D SMD_RS12405 PF00486 Transcriptional regulatory protein, C terminal SMD_RS12405 PF00072 Response regulator receiver domain SMD_RS12410 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS12410 PF00672 HAMP domain SMD_RS12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS12415 PF03466 LysR substrate binding domain SMD_RS12425 PF00873 AcrB/AcrD/AcrF family SMD_RS12430 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS12430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS12440 PF00072 Response regulator receiver domain SMD_RS12440 PF00486 Transcriptional regulatory protein, C terminal SMD_RS12445 PF08521 Two-component sensor kinase N-terminal SMD_RS12445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS12445 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS12450 PF07971 Glycosyl hydrolase family 92 SMD_RS12450 PF17678 Glycosyl hydrolase family 92 N-terminal domain SMD_RS12470 PF08946 Osmosensory transporter coiled coil SMD_RS12470 PF00083 Sugar (and other) transporter SMD_RS12485 PF13581 Histidine kinase-like ATPase domain SMD_RS12485 PF07536 HWE histidine kinase SMD_RS12485 PF13426 PAS domain SMD_RS12505 PF00593 TonB dependent receptor SMD_RS12505 PF07660 Secretin and TonB N terminus short domain SMD_RS12505 PF07715 TonB-dependent Receptor Plug Domain SMD_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS12520 PF03466 LysR substrate binding domain SMD_RS12525 PF02678 Pirin SMD_RS12525 PF05726 Pirin C-terminal cupin domain SMD_RS12530 PF00857 Isochorismatase family SMD_RS12555 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS12560 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS12580 PF07963 Prokaryotic N-terminal methylation motif SMD_RS12580 PF12019 Type II transport protein GspH SMD_RS12585 PF07963 Prokaryotic N-terminal methylation motif SMD_RS12585 PF02501 Type II secretion system (T2SS), protein I SMD_RS12600 PF12849 PBP superfamily domain SMD_RS12605 PF00482 Type II secretion system (T2SS), protein F SMD_RS12610 PF00437 Type II/IV secretion system protein SMD_RS12615 PF00263 Bacterial type II and III secretion system protein SMD_RS12615 PF03958 Bacterial type II/III secretion system short domain SMD_RS12635 PF07963 Prokaryotic N-terminal methylation motif SMD_RS12635 PF08334 Type II secretion system (T2SS), protein G SMD_RS12665 PF01037 Lrp/AsnC ligand binding domain SMD_RS12680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMD_RS12680 PF00128 Alpha amylase, catalytic domain SMD_RS12685 PF00128 Alpha amylase, catalytic domain SMD_RS12690 PF02446 4-alpha-glucanotransferase SMD_RS12695 PF11941 Domain of unknown function (DUF3459) SMD_RS12695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMD_RS12695 PF00128 Alpha amylase, catalytic domain SMD_RS12700 PF02806 Alpha amylase, C-terminal all-beta domain SMD_RS12700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMD_RS12700 PF00128 Alpha amylase, catalytic domain SMD_RS12705 PF08323 Starch synthase catalytic domain SMD_RS12705 PF00534 Glycosyl transferases group 1 SMD_RS12710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS12710 PF08447 PAS fold SMD_RS12715 PF00175 Oxidoreductase NAD-binding domain SMD_RS12715 PF00258 Flavodoxin SMD_RS12715 PF00667 FAD binding domain SMD_RS12720 PF08402 TOBE domain SMD_RS12720 PF00005 ABC transporter SMD_RS12725 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS12735 PF00027 Cyclic nucleotide-binding domain SMD_RS12735 PF13545 Crp-like helix-turn-helix domain SMD_RS12745 PF12804 MobA-like NTP transferase domain SMD_RS12750 PF02391 MoaE protein SMD_RS12760 PF00994 Probable molybdopterin binding domain SMD_RS12760 PF03453 MoeA N-terminal region (domain I and II) SMD_RS12760 PF03454 MoeA C-terminal region (domain IV) SMD_RS12765 PF01967 MoaC family SMD_RS12765 PF00994 Probable molybdopterin binding domain SMD_RS12770 PF04055 Radical SAM superfamily SMD_RS12770 PF06463 Molybdenum Cofactor Synthesis C SMD_RS12815 PF00561 alpha/beta hydrolase fold SMD_RS12820 PF02311 AraC-like ligand binding domain SMD_RS12820 PF12833 Helix-turn-helix domain SMD_RS12835 PF13533 Biotin-lipoyl like SMD_RS12840 PF02321 Outer membrane efflux protein SMD_RS12870 PF00486 Transcriptional regulatory protein, C terminal SMD_RS12870 PF00072 Response regulator receiver domain SMD_RS12875 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS12875 PF00672 HAMP domain SMD_RS12880 PF01219 Prokaryotic diacylglycerol kinase SMD_RS12885 PF00884 Sulfatase SMD_RS12885 PF08019 Phosphoethanolamine transferase EptA/EptB SMD_RS12905 PF00691 OmpA family SMD_RS12920 PF00106 short chain dehydrogenase SMD_RS12925 PF00501 AMP-binding enzyme SMD_RS12925 PF00975 Thioesterase domain SMD_RS12925 PF00668 Condensation domain SMD_RS12925 PF00550 Phosphopantetheine attachment site SMD_RS12935 PF00550 Phosphopantetheine attachment site SMD_RS12935 PF00857 Isochorismatase family SMD_RS12940 PF13193 AMP-binding enzyme C-terminal domain SMD_RS12940 PF00501 AMP-binding enzyme SMD_RS12945 PF00425 chorismate binding enzyme SMD_RS12950 PF07690 Major Facilitator Superfamily SMD_RS12955 PF03176 MMPL family SMD_RS12955 PF12823 Domain of unknown function (DUF3817) SMD_RS12960 PF00296 Luciferase-like monooxygenase SMD_RS12975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMD_RS12975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMD_RS12980 PF01613 Flavin reductase like domain SMD_RS12990 PF00487 Fatty acid desaturase SMD_RS12995 PF00111 2Fe-2S iron-sulfur cluster binding domain SMD_RS12995 PF00970 Oxidoreductase FAD-binding domain SMD_RS12995 PF00175 Oxidoreductase NAD-binding domain SMD_RS13000 PF00440 Bacterial regulatory proteins, tetR family SMD_RS13005 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13005 PF00593 TonB dependent receptor SMD_RS13015 PF01325 Iron dependent repressor, N-terminal DNA binding domain SMD_RS13015 PF02742 Iron dependent repressor, metal binding and dimerisation domain SMD_RS13020 PF01566 Natural resistance-associated macrophage protein SMD_RS13035 PF00268 Ribonucleotide reductase, small chain SMD_RS13040 PF00317 Ribonucleotide reductase, all-alpha domain SMD_RS13040 PF03477 ATP cone domain SMD_RS13040 PF02867 Ribonucleotide reductase, barrel domain SMD_RS13045 PF16197 Ketoacyl-synthetase C-terminal extension SMD_RS13045 PF14765 Polyketide synthase dehydratase SMD_RS13045 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS13045 PF00698 Acyl transferase domain SMD_RS13045 PF00109 Beta-ketoacyl synthase, N-terminal domain SMD_RS13045 PF02801 Beta-ketoacyl synthase, C-terminal domain SMD_RS13045 PF08659 KR domain SMD_RS13045 PF00550 Phosphopantetheine attachment site SMD_RS13045 PF00107 Zinc-binding dehydrogenase SMD_RS13050 PF00593 TonB dependent receptor SMD_RS13050 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13055 PF02028 BCCT, betaine/carnitine/choline family transporter SMD_RS13065 PF00893 Small Multidrug Resistance protein SMD_RS13070 PF00893 Small Multidrug Resistance protein SMD_RS13075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13075 PF03466 LysR substrate binding domain SMD_RS13085 PF00593 TonB dependent receptor SMD_RS13085 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13085 PF07660 Secretin and TonB N terminus short domain SMD_RS13090 PF00654 Voltage gated chloride channel SMD_RS13095 PF02308 MgtC family SMD_RS13105 PF01209 ubiE/COQ5 methyltransferase family SMD_RS13115 PF00691 OmpA family SMD_RS13120 PF03895 YadA-like membrane anchor domain SMD_RS13120 PF13018 Extended Signal Peptide of Type V secretion system SMD_RS13120 PF05658 Head domain of trimeric autotransporter adhesin SMD_RS13120 PF05662 Coiled stalk of trimeric autotransporter adhesin SMD_RS13120 PF05658 Head domain of trimeric autotransporter adhesin SMD_RS13120 PF03895 YadA-like membrane anchor domain SMD_RS13120 PF13018 Extended Signal Peptide of Type V secretion system SMD_RS13120 PF05662 Coiled stalk of trimeric autotransporter adhesin SMD_RS13150 PF13629 Pilus formation protein N terminal region SMD_RS13150 PF00263 Bacterial type II and III secretion system protein SMD_RS13150 PF04972 BON domain SMD_RS13160 PF00437 Type II/IV secretion system protein SMD_RS13200 PF00561 alpha/beta hydrolase fold SMD_RS13205 PF05977 Transmembrane secretion effector SMD_RS13215 PF01979 Amidohydrolase family SMD_RS13225 PF00857 Isochorismatase family SMD_RS13230 PF12833 Helix-turn-helix domain SMD_RS13230 PF10114 Sensory domain found in PocR SMD_RS13240 PF00672 HAMP domain SMD_RS13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS13240 PF07730 Histidine kinase SMD_RS13240 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SMD_RS13245 PF00196 Bacterial regulatory proteins, luxR family SMD_RS13245 PF00072 Response regulator receiver domain SMD_RS13250 PF07690 Major Facilitator Superfamily SMD_RS13255 PF03466 LysR substrate binding domain SMD_RS13255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13260 PF01979 Amidohydrolase family SMD_RS13260 PF13382 Adenine deaminase C-terminal domain SMD_RS13270 PF03466 LysR substrate binding domain SMD_RS13270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13280 PF01979 Amidohydrolase family SMD_RS13290 PF00593 TonB dependent receptor SMD_RS13290 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13300 PF02611 CDP-diacylglycerol pyrophosphatase SMD_RS13320 PF09330 D-lactate dehydrogenase, membrane binding SMD_RS13320 PF01565 FAD binding domain SMD_RS13325 PF01070 FMN-dependent dehydrogenase SMD_RS13330 PF00392 Bacterial regulatory proteins, gntR family SMD_RS13330 PF07729 FCD domain SMD_RS13335 PF02652 L-lactate permease SMD_RS13340 PF02308 MgtC family SMD_RS13350 PF12833 Helix-turn-helix domain SMD_RS13365 PF07690 Major Facilitator Superfamily SMD_RS13370 PF03466 LysR substrate binding domain SMD_RS13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13375 PF14310 Fibronectin type III-like domain SMD_RS13375 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMD_RS13375 PF00933 Glycosyl hydrolase family 3 N terminal domain SMD_RS13375 PF07691 PA14 domain SMD_RS13395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13395 PF03466 LysR substrate binding domain SMD_RS13420 PF01336 OB-fold nucleic acid binding domain SMD_RS13420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMD_RS13420 PF14579 Helix-hairpin-helix motif SMD_RS13420 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMD_RS13420 PF02811 PHP domain SMD_RS13435 PF01168 Alanine racemase, N-terminal domain SMD_RS13440 PF02540 NAD synthase SMD_RS13440 PF00958 GMP synthase C terminal domain SMD_RS13440 PF00117 Glutamine amidotransferase class-I SMD_RS13455 PF04542 Sigma-70 region 2 SMD_RS13455 PF08281 Sigma-70, region 4 SMD_RS13465 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13465 PF00593 TonB dependent receptor SMD_RS13490 PF01276 Orn/Lys/Arg decarboxylase, major domain SMD_RS13490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SMD_RS13490 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SMD_RS13495 PF13520 Amino acid permease SMD_RS13505 PF13098 Thioredoxin-like domain SMD_RS13510 PF00578 AhpC/TSA family SMD_RS13520 PF00376 MerR family regulatory protein SMD_RS13520 PF09278 MerR, DNA binding SMD_RS13575 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS13580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS13580 PF08447 PAS fold SMD_RS13580 PF13426 PAS domain SMD_RS13595 PF00563 EAL domain SMD_RS13595 PF08448 PAS fold SMD_RS13595 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS13595 PF13426 PAS domain SMD_RS13595 PF05231 MASE1 SMD_RS13595 PF08447 PAS fold SMD_RS13600 PF09371 Tex-like protein N-terminal domain SMD_RS13600 PF16921 Tex protein YqgF-like domain SMD_RS13600 PF17674 HHH domain SMD_RS13600 PF00575 S1 RNA binding domain SMD_RS13615 PF04024 PspC domain SMD_RS13620 PF17263 Family of unknown function (DUF5329) SMD_RS13625 PF00561 alpha/beta hydrolase fold SMD_RS13640 PF01554 MatE SMD_RS13660 PF03618 Kinase/pyrophosphorylase SMD_RS13665 PF02896 PEP-utilising enzyme, TIM barrel domain SMD_RS13665 PF00391 PEP-utilising enzyme, mobile domain SMD_RS13665 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SMD_RS13670 PF00924 Mechanosensitive ion channel SMD_RS13670 PF05552 Conserved TM helix SMD_RS13675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMD_RS13685 PF00929 Exonuclease SMD_RS13690 PF14437 MafB19-like deaminase SMD_RS13695 PF01638 HxlR-like helix-turn-helix SMD_RS13705 PF13673 Acetyltransferase (GNAT) domain SMD_RS13760 PF03135 CagE, TrbE, VirB family, component of type IV transporter system SMD_RS13770 PF04956 TrbC/VIRB2 family SMD_RS13775 PF01464 Transglycosylase SLT domain SMD_RS13780 PF00437 Type II/IV secretion system protein SMD_RS13785 PF03743 Bacterial conjugation TrbI-like protein SMD_RS13795 PF04335 VirB8 protein SMD_RS13805 PF02534 Type IV secretory system Conjugative DNA transfer SMD_RS13820 PF07690 Major Facilitator Superfamily SMD_RS13830 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS13830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMD_RS13860 PF13426 PAS domain SMD_RS13860 PF00072 Response regulator receiver domain SMD_RS13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS13865 PF01494 FAD binding domain SMD_RS13870 PF17754 MftR C-terminal domain SMD_RS13870 PF00440 Bacterial regulatory proteins, tetR family SMD_RS13875 PF07715 TonB-dependent Receptor Plug Domain SMD_RS13875 PF00593 TonB dependent receptor SMD_RS13885 PF00486 Transcriptional regulatory protein, C terminal SMD_RS13885 PF00072 Response regulator receiver domain SMD_RS13890 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS13900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS13905 PF00005 ABC transporter SMD_RS13905 PF02687 FtsX-like permease family SMD_RS13905 PF12704 MacB-like periplasmic core domain SMD_RS13945 PF01638 HxlR-like helix-turn-helix SMD_RS13950 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS13950 PF00107 Zinc-binding dehydrogenase SMD_RS13955 PF12462 DNA helicase IV / RNA helicase N terminal SMD_RS13955 PF13361 UvrD-like helicase C-terminal domain SMD_RS13955 PF00580 UvrD/REP helicase N-terminal domain SMD_RS13970 PF03466 LysR substrate binding domain SMD_RS13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS13975 PF02525 Flavodoxin-like fold SMD_RS13985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMD_RS13985 PF02403 Seryl-tRNA synthetase N-terminal domain SMD_RS13990 PF03544 Gram-negative bacterial TonB protein C-terminal SMD_RS14000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMD_RS14005 PF00800 Prephenate dehydratase SMD_RS14005 PF01817 Chorismate mutase type II SMD_RS14005 PF01842 ACT domain SMD_RS14010 PF00266 Aminotransferase class-V SMD_RS14050 PF07969 Amidohydrolase family SMD_RS14055 PF00221 Aromatic amino acid lyase SMD_RS14065 PF17392 Urocanase C-terminal domain SMD_RS14065 PF17391 Urocanase N-terminal domain SMD_RS14065 PF01175 Urocanase Rossmann-like domain SMD_RS14070 PF00144 Beta-lactamase SMD_RS14075 PF07715 TonB-dependent Receptor Plug Domain SMD_RS14075 PF00593 TonB dependent receptor SMD_RS14095 PF00440 Bacterial regulatory proteins, tetR family SMD_RS14155 PF00144 Beta-lactamase SMD_RS14165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS14165 PF03466 LysR substrate binding domain SMD_RS14170 PF00107 Zinc-binding dehydrogenase SMD_RS14170 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS14185 PF13360 PQQ-like domain SMD_RS14190 PF00521 DNA gyrase/topoisomerase IV, subunit A SMD_RS14190 PF03989 DNA gyrase C-terminal domain, beta-propeller SMD_RS14195 PF01008 Initiation factor 2 subunit family SMD_RS14205 PF00152 tRNA synthetases class II (D, K and N) SMD_RS14215 PF03120 NAD-dependent DNA ligase OB-fold domain SMD_RS14215 PF00533 BRCA1 C Terminus (BRCT) domain SMD_RS14215 PF01653 NAD-dependent DNA ligase adenylation domain SMD_RS14215 PF12826 Helix-hairpin-helix motif SMD_RS14215 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SMD_RS14220 PF00155 Aminotransferase class I and II SMD_RS14225 PF04354 ZipA, C-terminal FtsZ-binding domain SMD_RS14230 PF02463 RecF/RecN/SMC N terminal domain SMD_RS14235 PF01281 Ribosomal protein L9, N-terminal domain SMD_RS14235 PF03948 Ribosomal protein L9, C-terminal domain SMD_RS14240 PF01084 Ribosomal protein S18 SMD_RS14245 PF01250 Ribosomal protein S6 SMD_RS14250 PF03691 Uncharacterised protein family (UPF0167) SMD_RS14255 PF01521 Iron-sulphur cluster biosynthesis SMD_RS14260 PF00152 tRNA synthetases class II (D, K and N) SMD_RS14260 PF01336 OB-fold nucleic acid binding domain SMD_RS14280 PF00484 Carbonic anhydrase SMD_RS14285 PF06052 3-hydroxyanthranilic acid dioxygenase SMD_RS14290 PF00266 Aminotransferase class-V SMD_RS14295 PF01494 FAD binding domain SMD_RS14300 PF08411 Exonuclease C-terminal SMD_RS14300 PF00929 Exonuclease SMD_RS14310 PF00248 Aldo/keto reductase family SMD_RS14325 PF01513 ATP-NAD kinase SMD_RS14330 PF05088 Bacterial NAD-glutamate dehydrogenase SMD_RS14340 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS14340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS14345 PF00873 AcrB/AcrD/AcrF family SMD_RS14355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS14355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS14355 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS14360 PF13847 Methyltransferase domain SMD_RS14360 PF03551 Transcriptional regulator PadR-like family SMD_RS14365 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMD_RS14365 PF02574 Homocysteine S-methyltransferase SMD_RS14365 PF02310 B12 binding domain SMD_RS14365 PF02607 B12 binding domain SMD_RS14365 PF00809 Pterin binding enzyme SMD_RS14370 PF02574 Homocysteine S-methyltransferase SMD_RS14370 PF00809 Pterin binding enzyme SMD_RS14370 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMD_RS14370 PF02607 B12 binding domain SMD_RS14370 PF02310 B12 binding domain SMD_RS14380 PF01757 Acyltransferase family SMD_RS14390 PF04102 SlyX SMD_RS14395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMD_RS14395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMD_RS14395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMD_RS14400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMD_RS14400 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMD_RS14405 PF00255 Glutathione peroxidase SMD_RS14415 PF00392 Bacterial regulatory proteins, gntR family SMD_RS14420 PF00005 ABC transporter SMD_RS14445 PF00206 Lyase SMD_RS14445 PF10415 Fumarase C C-terminus SMD_RS14450 PF08328 Adenylosuccinate lyase C-terminal SMD_RS14450 PF00206 Lyase SMD_RS14455 PF08007 Cupin superfamily protein SMD_RS14465 PF00676 Dehydrogenase E1 component SMD_RS14465 PF16078 2-oxoglutarate dehydrogenase N-terminus SMD_RS14465 PF16870 2-oxoglutarate dehydrogenase C-terminal SMD_RS14465 PF02779 Transketolase, pyrimidine binding domain SMD_RS14470 PF00364 Biotin-requiring enzyme SMD_RS14470 PF02817 e3 binding domain SMD_RS14470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMD_RS14475 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS14475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMD_RS14490 PF09423 PhoD-like phosphatase SMD_RS14490 PF16655 PhoD-like phosphatase, N-terminal domain SMD_RS14500 PF03796 DnaB-like helicase C terminal domain SMD_RS14500 PF00772 DnaB-like helicase N terminal domain SMD_RS14505 PF03358 NADPH-dependent FMN reductase SMD_RS14510 PF13537 Glutamine amidotransferase domain SMD_RS14510 PF00733 Asparagine synthase SMD_RS14515 PF02779 Transketolase, pyrimidine binding domain SMD_RS14515 PF02780 Transketolase, C-terminal domain SMD_RS14520 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS14540 PF01026 TatD related DNase SMD_RS14545 PF00899 ThiF family SMD_RS14550 PF01322 Cytochrome C' SMD_RS14560 PF00313 'Cold-shock' DNA-binding domain SMD_RS14570 PF02253 Phospholipase A1 SMD_RS14575 PF03960 ArsC family SMD_RS14580 PF13417 Glutathione S-transferase, N-terminal domain SMD_RS14580 PF00043 Glutathione S-transferase, C-terminal domain SMD_RS14590 PF05681 Fumarate hydratase (Fumerase) SMD_RS14590 PF05683 Fumarase C-terminus SMD_RS14595 PF04542 Sigma-70 region 2 SMD_RS14595 PF08281 Sigma-70, region 4 SMD_RS14595 PF12680 SnoaL-like domain SMD_RS14600 PF02627 Carboxymuconolactone decarboxylase family SMD_RS14605 PF00005 ABC transporter SMD_RS14610 PF00175 Oxidoreductase NAD-binding domain SMD_RS14610 PF00970 Oxidoreductase FAD-binding domain SMD_RS14615 PF00255 Glutathione peroxidase SMD_RS14620 PF01432 Peptidase family M3 SMD_RS14645 PF01694 Rhomboid family SMD_RS14650 PF00854 POT family SMD_RS14660 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMD_RS14660 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMD_RS14665 PF00545 ribonuclease SMD_RS14680 PF01106 NifU-like domain SMD_RS14685 PF01329 Pterin 4 alpha carbinolamine dehydratase SMD_RS14695 PF02535 ZIP Zinc transporter SMD_RS14700 PF00849 RNA pseudouridylate synthase SMD_RS14700 PF01479 S4 domain SMD_RS14705 PF12111 Polyribonucleotide phosphorylase C terminal SMD_RS14705 PF00575 S1 RNA binding domain SMD_RS14705 PF10150 Ribonuclease E/G family SMD_RS14720 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS14725 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS14730 PF01547 Bacterial extracellular solute-binding protein SMD_RS14745 PF00356 Bacterial regulatory proteins, lacI family SMD_RS14750 PF01722 BolA-like protein SMD_RS14755 PF03795 YCII-related domain SMD_RS14760 PF02616 Segregation and condensation protein ScpA SMD_RS14765 PF04079 Segregation and condensation complex subunit ScpB SMD_RS14770 PF00849 RNA pseudouridylate synthase SMD_RS14770 PF01479 S4 domain SMD_RS14775 PF14525 AraC-binding-like domain SMD_RS14775 PF12833 Helix-turn-helix domain SMD_RS14780 PF07690 Major Facilitator Superfamily SMD_RS14790 PF00795 Carbon-nitrogen hydrolase SMD_RS14795 PF00155 Aminotransferase class I and II SMD_RS14800 PF00005 ABC transporter SMD_RS14805 PF03379 CcmB protein SMD_RS14810 PF01578 Cytochrome C assembly protein SMD_RS14820 PF03100 CcmE SMD_RS14825 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SMD_RS14825 PF01578 Cytochrome C assembly protein SMD_RS14830 PF08534 Redoxin SMD_RS14835 PF03918 Cytochrome C biogenesis protein SMD_RS14845 PF00561 alpha/beta hydrolase fold SMD_RS14855 PF00005 ABC transporter SMD_RS14855 PF00664 ABC transporter transmembrane region SMD_RS14860 PF00664 ABC transporter transmembrane region SMD_RS14860 PF00005 ABC transporter SMD_RS14865 PF01654 Cytochrome bd terminal oxidase subunit I SMD_RS14870 PF02322 Cytochrome bd terminal oxidase subunit II SMD_RS14900 PF01522 Polysaccharide deacetylase SMD_RS14900 PF14883 Hypothetical glycosyl hydrolase family 13 SMD_RS14905 PF00535 Glycosyl transferase family 2 SMD_RS14915 PF00171 Aldehyde dehydrogenase family SMD_RS14920 PF01472 PUA domain SMD_RS14920 PF00696 Amino acid kinase family SMD_RS14930 PF00206 Lyase SMD_RS14935 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMD_RS14945 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase SMD_RS14945 PF00696 Amino acid kinase family SMD_RS14950 PF07687 Peptidase dimerisation domain SMD_RS14950 PF01546 Peptidase family M20/M25/M40 SMD_RS14955 PF00764 Arginosuccinate synthase SMD_RS14960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMD_RS14960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMD_RS14970 PF01406 tRNA synthetases class I (C) catalytic domain SMD_RS14970 PF09190 DALR domain SMD_RS14975 PF02657 Fe-S metabolism associated domain SMD_RS14985 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMD_RS14990 PF01979 Amidohydrolase family SMD_RS14995 PF08460 Bacterial SH3 domain SMD_RS14995 PF01551 Peptidase family M23 SMD_RS15005 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS15015 PF01979 Amidohydrolase family SMD_RS15020 PF01132 Elongation factor P (EF-P) OB domain SMD_RS15020 PF08207 Elongation factor P (EF-P) KOW-like domain SMD_RS15020 PF09285 Elongation factor P, C-terminal SMD_RS15025 PF04055 Radical SAM superfamily SMD_RS15030 PF00563 EAL domain SMD_RS15030 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS15030 PF13188 PAS domain SMD_RS15030 PF03707 Bacterial signalling protein N terminal repeat SMD_RS15040 PF00588 SpoU rRNA Methylase family SMD_RS15045 PF00459 Inositol monophosphatase family SMD_RS15050 PF01435 Peptidase family M48 SMD_RS15055 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMD_RS15060 PF00106 short chain dehydrogenase SMD_RS15065 PF07879 PHB/PHA accumulation regulator DNA-binding domain SMD_RS15065 PF05233 PHB accumulation regulatory domain SMD_RS15080 PF01119 DNA mismatch repair protein, C-terminal domain SMD_RS15080 PF08676 MutL C terminal dimerisation domain SMD_RS15085 PF11741 AMIN domain SMD_RS15085 PF01520 N-acetylmuramoyl-L-alanine amidase SMD_RS15090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMD_RS15095 PF03853 YjeF-related protein N-terminus SMD_RS15095 PF01256 Carbohydrate kinase SMD_RS15100 PF08331 Domain of unknown function (DUF1730) SMD_RS15105 PF02601 Exonuclease VII, large subunit SMD_RS15105 PF13742 OB-fold nucleic acid binding domain SMD_RS15115 PF03781 Sulfatase-modifying factor enzyme 1 SMD_RS15120 PF00570 HRDC domain SMD_RS15120 PF01612 3'-5' exonuclease SMD_RS15125 PF07715 TonB-dependent Receptor Plug Domain SMD_RS15125 PF00593 TonB dependent receptor SMD_RS15145 PF02805 Metal binding domain of Ada SMD_RS15145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMD_RS15145 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMD_RS15145 PF12833 Helix-turn-helix domain SMD_RS15150 PF00107 Zinc-binding dehydrogenase SMD_RS15150 PF16884 N-terminal domain of oxidoreductase SMD_RS15175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS15175 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS15175 PF12806 Acetyl-CoA dehydrogenase C-terminal like SMD_RS15175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS15185 PF02780 Transketolase, C-terminal domain SMD_RS15185 PF02779 Transketolase, pyrimidine binding domain SMD_RS15185 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMD_RS15200 PF00072 Response regulator receiver domain SMD_RS15200 PF00196 Bacterial regulatory proteins, luxR family SMD_RS15225 PF00114 Pilin (bacterial filament) SMD_RS15225 PF07963 Prokaryotic N-terminal methylation motif SMD_RS15255 PF17932 Tetracyclin repressor-like, C-terminal domain SMD_RS15255 PF00440 Bacterial regulatory proteins, tetR family SMD_RS15260 PF00893 Small Multidrug Resistance protein SMD_RS15270 PF01810 LysE type translocator SMD_RS15275 PF01177 Asp/Glu/Hydantoin racemase SMD_RS15315 PF00216 Bacterial DNA-binding protein SMD_RS15320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SMD_RS15320 PF01588 Putative tRNA binding domain SMD_RS15320 PF03147 Ferredoxin-fold anticodon binding domain SMD_RS15320 PF03483 B3/4 domain SMD_RS15320 PF03484 tRNA synthetase B5 domain SMD_RS15325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SMD_RS15325 PF01409 tRNA synthetases class II core domain (F) SMD_RS15330 PF00453 Ribosomal protein L20 SMD_RS15335 PF05198 Translation initiation factor IF-3, N-terminal domain SMD_RS15335 PF00707 Translation initiation factor IF-3, C-terminal domain SMD_RS15340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMD_RS15340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMD_RS15340 PF02824 TGS domain SMD_RS15340 PF03129 Anticodon binding domain SMD_RS15360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMD_RS15365 PF00041 Fibronectin type III domain SMD_RS15365 PF00704 Glycosyl hydrolases family 18 SMD_RS15370 PF00013 KH domain SMD_RS15370 PF00575 S1 RNA binding domain SMD_RS15370 PF01138 3' exoribonuclease family, domain 1 SMD_RS15370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SMD_RS15370 PF03725 3' exoribonuclease family, domain 2 SMD_RS15375 PF00312 Ribosomal protein S15 SMD_RS15380 PF01509 TruB family pseudouridylate synthase (N terminal domain) SMD_RS15380 PF16198 tRNA pseudouridylate synthase B C-terminal domain SMD_RS15380 PF09157 Pseudouridine synthase II TruB, C-terminal SMD_RS15385 PF02033 Ribosome-binding factor A SMD_RS15390 PF11987 Translation-initiation factor 2 SMD_RS15390 PF08364 Bacterial translation initiation factor IF-2 associated region SMD_RS15390 PF00009 Elongation factor Tu GTP binding domain SMD_RS15390 PF04760 Translation initiation factor IF-2, N-terminal region SMD_RS15395 PF13184 NusA-like KH domain SMD_RS15395 PF08529 NusA N-terminal domain SMD_RS15395 PF00575 S1 RNA binding domain SMD_RS15400 PF02576 RimP N-terminal domain SMD_RS15400 PF17384 RimP C-terminal SH3 domain SMD_RS15415 PF00361 Proton-conducting membrane transporter SMD_RS15420 PF00361 Proton-conducting membrane transporter SMD_RS15420 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SMD_RS15425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMD_RS15425 PF00361 Proton-conducting membrane transporter SMD_RS15430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMD_RS15435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMD_RS15440 PF12838 4Fe-4S dicluster domain SMD_RS15445 PF00146 NADH dehydrogenase SMD_RS15450 PF00384 Molybdopterin oxidoreductase SMD_RS15450 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal SMD_RS15450 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMD_RS15455 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMD_RS15455 PF10531 SLBB domain SMD_RS15455 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMD_RS15465 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMD_RS15470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMD_RS15475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMD_RS15480 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMD_RS15495 PF00121 Triosephosphate isomerase SMD_RS15505 PF00884 Sulfatase SMD_RS15510 PF13439 Glycosyltransferase Family 4 SMD_RS15510 PF00534 Glycosyl transferases group 1 SMD_RS15515 PF01522 Polysaccharide deacetylase SMD_RS15520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMD_RS15520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMD_RS15520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMD_RS15520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMD_RS15525 PF01039 Carboxyl transferase domain SMD_RS15525 PF17848 Acetyl-coA carboxylase zinc finger domain SMD_RS15530 PF00290 Tryptophan synthase alpha chain SMD_RS15540 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS15545 PF03466 LysR substrate binding domain SMD_RS15550 PF05816 Toxic anion resistance protein (TelA) SMD_RS15560 PF05491 RuvB C-terminal winged helix domain SMD_RS15560 PF17864 RuvB AAA lid domain SMD_RS15560 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMD_RS15575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SMD_RS15580 PF01416 tRNA pseudouridine synthase SMD_RS15595 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMD_RS15595 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMD_RS15600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMD_RS15600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMD_RS15605 PF01264 Chorismate synthase SMD_RS15610 PF05175 Methyltransferase small domain SMD_RS15615 PF02630 SCO1/SenC SMD_RS15620 PF02666 Phosphatidylserine decarboxylase SMD_RS15635 PF05872 Bacterial protein of unknown function (DUF853) SMD_RS15640 PF01272 Transcription elongation factor, GreA/GreB, C-term SMD_RS15640 PF03449 Transcription elongation factor, N-terminal SMD_RS15650 PF04055 Radical SAM superfamily SMD_RS15650 PF18693 TRAM domain SMD_RS15650 PF00919 Uncharacterized protein family UPF0004 SMD_RS15700 PF01738 Dienelactone hydrolase family SMD_RS15715 PF00692 dUTPase SMD_RS15720 PF10609 NUBPL iron-transfer P-loop NTPase SMD_RS15725 PF00593 TonB dependent receptor SMD_RS15725 PF07715 TonB-dependent Receptor Plug Domain SMD_RS15730 PF07715 TonB-dependent Receptor Plug Domain SMD_RS15730 PF00593 TonB dependent receptor SMD_RS15740 PF05649 Peptidase family M13 SMD_RS15740 PF01431 Peptidase family M13 SMD_RS15770 PF00892 EamA-like transporter family SMD_RS15775 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS15775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMD_RS15780 PF04235 Protein of unknown function (DUF418) SMD_RS15785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMD_RS15790 PF00877 NlpC/P60 family SMD_RS15795 PF00877 NlpC/P60 family SMD_RS15800 PF00375 Sodium:dicarboxylate symporter family SMD_RS15815 PF01171 PP-loop family SMD_RS15815 PF09179 TilS substrate binding domain SMD_RS15815 PF11734 TilS substrate C-terminal domain SMD_RS15820 PF02609 Exonuclease VII small subunit SMD_RS15825 PF00348 Polyprenyl synthetase SMD_RS15835 PF01523 Putative modulator of DNA gyrase SMD_RS15840 PF04751 Protein of unknown function (DUF615) SMD_RS15845 PF01523 Putative modulator of DNA gyrase SMD_RS15855 PF10150 Ribonuclease E/G family SMD_RS15855 PF00575 S1 RNA binding domain SMD_RS15860 PF02545 Maf-like protein SMD_RS15865 PF04402 Protein of unknown function (DUF541) SMD_RS15875 PF00593 TonB dependent receptor SMD_RS15875 PF07715 TonB-dependent Receptor Plug Domain SMD_RS15880 PF13520 Amino acid permease SMD_RS15895 PF02590 Predicted SPOUT methyltransferase SMD_RS15905 PF01467 Cytidylyltransferase-like SMD_RS15920 PF08264 Anticodon-binding domain of tRNA SMD_RS15920 PF13603 Leucyl-tRNA synthetase, Domain 2 SMD_RS15920 PF00133 tRNA synthetases class I (I, L, M and V) SMD_RS15930 PF00085 Thioredoxin SMD_RS15965 PF02592 Putative vitamin uptake transporter SMD_RS15975 PF11954 Domain of unknown function (DUF3471) SMD_RS15975 PF00144 Beta-lactamase SMD_RS15980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMD_RS15990 PF01588 Putative tRNA binding domain SMD_RS15990 PF09334 tRNA synthetases class I (M) SMD_RS16000 PF04060 Putative Fe-S cluster SMD_RS16005 PF01042 Endoribonuclease L-PSP SMD_RS16010 PF09924 Uncharacterised conserved protein (DUF2156) SMD_RS16010 PF03706 Lysylphosphatidylglycerol synthase TM region SMD_RS16040 PF03831 PhnA domain SMD_RS16040 PF08274 PhnA Zinc-Ribbon SMD_RS16070 PF04542 Sigma-70 region 2 SMD_RS16070 PF08281 Sigma-70, region 4 SMD_RS16085 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMD_RS16090 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SMD_RS16095 PF01863 Protein of unknown function DUF45 SMD_RS16105 PF13091 PLD-like domain SMD_RS16115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMD_RS16115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMD_RS16120 PF03797 Autotransporter beta-domain SMD_RS16120 PF00082 Subtilase family SMD_RS16125 PF00108 Thiolase, N-terminal domain SMD_RS16125 PF02803 Thiolase, C-terminal domain SMD_RS16140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS16140 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS16140 PF18158 Adaptive response protein AidB N-terminal domain SMD_RS16150 PF04679 ATP dependent DNA ligase C terminal region SMD_RS16150 PF01068 ATP dependent DNA ligase domain SMD_RS16155 PF00270 DEAD/DEAH box helicase SMD_RS16155 PF00271 Helicase conserved C-terminal domain SMD_RS16155 PF08494 DEAD/H associated SMD_RS16170 PF01494 FAD binding domain SMD_RS16175 PF00313 'Cold-shock' DNA-binding domain SMD_RS16180 PF01048 Phosphorylase superfamily SMD_RS16185 PF00156 Phosphoribosyl transferase domain SMD_RS16190 PF00933 Glycosyl hydrolase family 3 N terminal domain SMD_RS16195 PF01323 DSBA-like thioredoxin domain SMD_RS16200 PF01928 CYTH domain SMD_RS16205 PF05958 tRNA (Uracil-5-)-methyltransferase SMD_RS16210 PF00486 Transcriptional regulatory protein, C terminal SMD_RS16210 PF00072 Response regulator receiver domain SMD_RS16215 PF11967 Recombination protein O N terminal SMD_RS16215 PF02565 Recombination protein O C terminal SMD_RS16220 PF01926 50S ribosome-binding GTPase SMD_RS16220 PF07650 KH domain SMD_RS16225 PF00035 Double-stranded RNA binding motif SMD_RS16225 PF14622 Ribonuclease-III-like SMD_RS16235 PF10502 Signal peptidase, peptidase S26 SMD_RS16240 PF06421 GTP-binding protein LepA C-terminus SMD_RS16240 PF03144 Elongation factor Tu domain 2 SMD_RS16240 PF00009 Elongation factor Tu GTP binding domain SMD_RS16240 PF00679 Elongation factor G C-terminus SMD_RS16245 PF13180 PDZ domain SMD_RS16255 PF08281 Sigma-70, region 4 SMD_RS16255 PF04542 Sigma-70 region 2 SMD_RS16260 PF00378 Enoyl-CoA hydratase/isomerase SMD_RS16260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMD_RS16260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMD_RS16265 PF02678 Pirin SMD_RS16265 PF05726 Pirin C-terminal cupin domain SMD_RS16270 PF00230 Major intrinsic protein SMD_RS16280 PF05726 Pirin C-terminal cupin domain SMD_RS16280 PF02678 Pirin SMD_RS16285 PF13722 5TM C-terminal transporter carbon starvation CstA SMD_RS16285 PF02554 Carbon starvation protein CstA SMD_RS16290 PF04328 Selenoprotein, putative SMD_RS16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS16305 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS16305 PF00672 HAMP domain SMD_RS16310 PF00072 Response regulator receiver domain SMD_RS16310 PF00486 Transcriptional regulatory protein, C terminal SMD_RS16325 PF08019 Phosphoethanolamine transferase EptA/EptB SMD_RS16325 PF00884 Sulfatase SMD_RS16345 PF07690 Major Facilitator Superfamily SMD_RS16350 PF02347 Glycine cleavage system P-protein SMD_RS16360 PF00324 Amino acid permease SMD_RS16365 PF12833 Helix-turn-helix domain SMD_RS16365 PF02311 AraC-like ligand binding domain SMD_RS16370 PF00199 Catalase SMD_RS16370 PF06628 Catalase-related immune-responsive SMD_RS16370 PF18011 C-terminal domain found in long catalases SMD_RS16390 PF00672 HAMP domain SMD_RS16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS16390 PF02203 Tar ligand binding domain homologue SMD_RS16395 PF03734 L,D-transpeptidase catalytic domain SMD_RS16395 PF01476 LysM domain SMD_RS16400 PF04225 Opacity-associated protein A LysM-like domain SMD_RS16400 PF01551 Peptidase family M23 SMD_RS16410 PF00709 Adenylosuccinate synthetase SMD_RS16420 PF01145 SPFH domain / Band 7 family SMD_RS16425 PF12221 Bacterial membrane protein N terminal SMD_RS16425 PF01145 SPFH domain / Band 7 family SMD_RS16430 PF00107 Zinc-binding dehydrogenase SMD_RS16430 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS16435 PF00072 Response regulator receiver domain SMD_RS16440 PF00226 DnaJ domain SMD_RS16440 PF01556 DnaJ C terminal domain SMD_RS16445 PF00462 Glutaredoxin SMD_RS16445 PF08534 Redoxin SMD_RS16455 PF06832 Penicillin-Binding Protein C-terminus Family SMD_RS16455 PF00912 Transglycosylase SMD_RS16455 PF00905 Penicillin binding protein transpeptidase domain SMD_RS16460 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SMD_RS16460 PF00207 Alpha-2-macroglobulin family SMD_RS16460 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SMD_RS16460 PF01835 MG2 domain SMD_RS16460 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SMD_RS16460 PF07703 Alpha-2-macroglobulin bait region domain SMD_RS16460 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SMD_RS16460 PF17962 Bacterial macroglobulin domain 6 SMD_RS16465 PF03972 MmgE/PrpD family SMD_RS16470 PF04303 PrpF protein SMD_RS16480 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMD_RS16485 PF00330 Aconitase family (aconitate hydratase) SMD_RS16485 PF00694 Aconitase C-terminal domain SMD_RS16490 PF00285 Citrate synthase, C-terminal domain SMD_RS16500 PF02954 Bacterial regulatory protein, Fis family SMD_RS16500 PF00158 Sigma-54 interaction domain SMD_RS16500 PF06506 Propionate catabolism activator SMD_RS16510 PF01243 Pyridoxamine 5'-phosphate oxidase SMD_RS16510 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SMD_RS16525 PF01202 Shikimate kinase SMD_RS16530 PF01761 3-dehydroquinate synthase SMD_RS16540 PF01208 Uroporphyrinogen decarboxylase (URO-D) SMD_RS16545 PF07690 Major Facilitator Superfamily SMD_RS16550 PF00072 Response regulator receiver domain SMD_RS16550 PF17149 Periplasmic sensor domain found in signal transduction proteins SMD_RS16550 PF01627 Hpt domain SMD_RS16550 PF00672 HAMP domain SMD_RS16550 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS16550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS16565 PF01292 Prokaryotic cytochrome b561 SMD_RS16580 PF03313 Serine dehydratase alpha chain SMD_RS16580 PF03315 Serine dehydratase beta chain SMD_RS16585 PF00561 alpha/beta hydrolase fold SMD_RS16590 PF00696 Amino acid kinase family SMD_RS16590 PF00742 Homoserine dehydrogenase SMD_RS16590 PF03447 Homoserine dehydrogenase, NAD binding domain SMD_RS16595 PF01053 Cys/Met metabolism PLP-dependent enzyme SMD_RS16600 PF00561 alpha/beta hydrolase fold SMD_RS16605 PF08525 Opacity-associated protein A N-terminal motif SMD_RS16605 PF01476 LysM domain SMD_RS16605 PF01551 Peptidase family M23 SMD_RS16610 PF16658 Class II release factor RF3, C-terminal domain SMD_RS16610 PF00009 Elongation factor Tu GTP binding domain SMD_RS16615 PF03006 Haemolysin-III related SMD_RS16630 PF00535 Glycosyl transferase family 2 SMD_RS16635 PF00912 Transglycosylase SMD_RS16640 PF01430 Hsp33 protein SMD_RS16650 PF00593 TonB dependent receptor SMD_RS16650 PF07715 TonB-dependent Receptor Plug Domain SMD_RS16655 PF00440 Bacterial regulatory proteins, tetR family SMD_RS16665 PF09317 Domain of unknown function (DUF1974) SMD_RS16665 PF02770 Acyl-CoA dehydrogenase, middle domain SMD_RS16665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMD_RS16665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMD_RS16700 PF03466 LysR substrate binding domain SMD_RS16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS16710 PF01597 Glycine cleavage H-protein SMD_RS16715 PF01571 Aminomethyltransferase folate-binding domain SMD_RS16715 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMD_RS16725 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SMD_RS16730 PF03819 MazG nucleotide pyrophosphohydrolase domain SMD_RS16735 PF00459 Inositol monophosphatase family SMD_RS16740 PF00293 NUDIX domain SMD_RS16745 PF00202 Aminotransferase class-III SMD_RS16750 PF04452 RNA methyltransferase SMD_RS16765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS16765 PF01627 Hpt domain SMD_RS16765 PF01584 CheW-like domain SMD_RS16765 PF02895 Signal transducing histidine kinase, homodimeric domain SMD_RS16765 PF00072 Response regulator receiver domain SMD_RS16770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS16770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SMD_RS16775 PF01584 CheW-like domain SMD_RS16780 PF00072 Response regulator receiver domain SMD_RS16785 PF00072 Response regulator receiver domain SMD_RS16790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SMD_RS16790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SMD_RS16800 PF00814 Glycoprotease family SMD_RS16805 PF04851 Type III restriction enzyme, res subunit SMD_RS16805 PF13307 Helicase C-terminal domain SMD_RS16815 PF00912 Transglycosylase SMD_RS16815 PF00905 Penicillin binding protein transpeptidase domain SMD_RS16815 PF14814 Bifunctional transglycosylase second domain SMD_RS16820 PF00535 Glycosyl transferase family 2 SMD_RS16830 PF13291 ACT domain SMD_RS16830 PF04607 Region found in RelA / SpoT proteins SMD_RS16830 PF02824 TGS domain SMD_RS16840 PF11898 Domain of unknown function (DUF3418) SMD_RS16840 PF04408 Helicase associated domain (HA2) SMD_RS16840 PF00271 Helicase conserved C-terminal domain SMD_RS16840 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SMD_RS16840 PF00270 DEAD/DEAH box helicase SMD_RS16845 PF00210 Ferritin-like domain SMD_RS16850 PF00270 DEAD/DEAH box helicase SMD_RS16850 PF09382 RQC domain SMD_RS16850 PF16124 RecQ zinc-binding SMD_RS16850 PF00271 Helicase conserved C-terminal domain SMD_RS16850 PF00570 HRDC domain SMD_RS16860 PF00394 Multicopper oxidase SMD_RS16860 PF07731 Multicopper oxidase SMD_RS16860 PF07732 Multicopper oxidase SMD_RS16865 PF05275 Copper resistance protein B precursor (CopB) SMD_RS16935 PF10137 Predicted nucleotide-binding protein containing TIR-like domain SMD_RS17170 PF06508 Queuosine biosynthesis protein QueC SMD_RS17175 PF04055 Radical SAM superfamily SMD_RS17185 PF00691 OmpA family SMD_RS17190 PF07676 WD40-like Beta Propeller Repeat SMD_RS17190 PF04052 TolB amino-terminal domain SMD_RS17200 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS17205 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS17210 PF03061 Thioesterase superfamily SMD_RS17215 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMD_RS17215 PF05491 RuvB C-terminal winged helix domain SMD_RS17215 PF17864 RuvB AAA lid domain SMD_RS17220 PF02705 K+ potassium transporter SMD_RS17225 PF07499 RuvA, C-terminal domain SMD_RS17225 PF01330 RuvA N terminal domain SMD_RS17230 PF02075 Crossover junction endodeoxyribonuclease RuvC SMD_RS17235 PF01709 Transcriptional regulator SMD_RS17255 PF00152 tRNA synthetases class II (D, K and N) SMD_RS17255 PF02938 GAD domain SMD_RS17255 PF01336 OB-fold nucleic acid binding domain SMD_RS17280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS17280 PF03466 LysR substrate binding domain SMD_RS17285 PF00005 ABC transporter SMD_RS17285 PF12848 ABC transporter SMD_RS17305 PF00999 Sodium/hydrogen exchanger family SMD_RS17305 PF02254 TrkA-N domain SMD_RS17310 PF01053 Cys/Met metabolism PLP-dependent enzyme SMD_RS17315 PF00072 Response regulator receiver domain SMD_RS17315 PF00486 Transcriptional regulatory protein, C terminal SMD_RS17320 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS17320 PF16527 Two-component sensor protein CpxA, periplasmic domain SMD_RS17320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS17320 PF00672 HAMP domain SMD_RS17335 PF10431 C-terminal, D2-small domain, of ClpB protein SMD_RS17335 PF07724 AAA domain (Cdc48 subfamily) SMD_RS17335 PF02861 Clp amino terminal domain, pathogenicity island component SMD_RS17335 PF17871 AAA lid domain SMD_RS17335 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS17355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMD_RS17355 PF00205 Thiamine pyrophosphate enzyme, central domain SMD_RS17355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMD_RS17370 PF07715 TonB-dependent Receptor Plug Domain SMD_RS17370 PF00593 TonB dependent receptor SMD_RS17375 PF02358 Trehalose-phosphatase SMD_RS17380 PF00723 Glycosyl hydrolases family 15 SMD_RS17385 PF00982 Glycosyltransferase family 20 SMD_RS17390 PF04134 Protein of unknown function, DUF393 SMD_RS17400 PF02578 Multi-copper polyphenol oxidoreductase laccase SMD_RS17405 PF00849 RNA pseudouridylate synthase SMD_RS17410 PF13525 Outer membrane lipoprotein SMD_RS17420 PF02540 NAD synthase SMD_RS17420 PF00795 Carbon-nitrogen hydrolase SMD_RS17425 PF00549 CoA-ligase SMD_RS17425 PF02629 CoA binding domain SMD_RS17430 PF00549 CoA-ligase SMD_RS17430 PF08442 ATP-grasp domain SMD_RS17435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS17435 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS17440 PF00158 Sigma-54 interaction domain SMD_RS17440 PF00072 Response regulator receiver domain SMD_RS17440 PF02954 Bacterial regulatory protein, Fis family SMD_RS17445 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMD_RS17445 PF00437 Type II/IV secretion system protein SMD_RS17450 PF00114 Pilin (bacterial filament) SMD_RS17450 PF07963 Prokaryotic N-terminal methylation motif SMD_RS17455 PF00482 Type II secretion system (T2SS), protein F SMD_RS17460 PF01478 Type IV leader peptidase family SMD_RS17460 PF06750 Bacterial Peptidase A24 N-terminal domain SMD_RS17465 PF01121 Dephospho-CoA kinase SMD_RS17475 PF01527 Transposase SMD_RS17480 PF13683 Integrase core domain SMD_RS17480 PF13276 HTH-like domain SMD_RS17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS17485 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS17485 PF00672 HAMP domain SMD_RS17490 PF00486 Transcriptional regulatory protein, C terminal SMD_RS17490 PF00072 Response regulator receiver domain SMD_RS17510 PF08443 RimK-like ATP-grasp domain SMD_RS17510 PF18030 RimK PreATP-grasp domain SMD_RS17520 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS17520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS17525 PF03412 Peptidase C39 family SMD_RS17525 PF00005 ABC transporter SMD_RS17525 PF00664 ABC transporter transmembrane region SMD_RS17535 PF03797 Autotransporter beta-domain SMD_RS17535 PF00657 GDSL-like Lipase/Acylhydrolase SMD_RS17545 PF05690 Thiazole biosynthesis protein ThiG SMD_RS17550 PF02390 Putative methyltransferase SMD_RS17555 PF03600 Citrate transporter SMD_RS17555 PF02080 TrkA-C domain SMD_RS17570 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMD_RS17575 PF01741 Large-conductance mechanosensitive channel, MscL SMD_RS17585 PF01235 Sodium:alanine symporter family SMD_RS17595 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMD_RS17595 PF00588 SpoU rRNA Methylase family SMD_RS17600 PF01235 Sodium:alanine symporter family SMD_RS17610 PF00873 AcrB/AcrD/AcrF family SMD_RS17615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS17615 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS17630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS17630 PF03466 LysR substrate binding domain SMD_RS17635 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS17640 PF01661 Macro domain SMD_RS17650 PF00274 Fructose-bisphosphate aldolase class-I SMD_RS17655 PF00224 Pyruvate kinase, barrel domain SMD_RS17655 PF02887 Pyruvate kinase, alpha/beta domain SMD_RS17660 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS17665 PF00162 Phosphoglycerate kinase SMD_RS17680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SMD_RS17680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SMD_RS17685 PF03922 OmpW family SMD_RS17695 PF00753 Metallo-beta-lactamase superfamily SMD_RS17710 PF03965 Penicillinase repressor SMD_RS17725 PF01381 Helix-turn-helix SMD_RS17730 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB SMD_RS17735 PF02780 Transketolase, C-terminal domain SMD_RS17735 PF00456 Transketolase, thiamine diphosphate binding domain SMD_RS17735 PF02779 Transketolase, pyrimidine binding domain SMD_RS17740 PF00375 Sodium:dicarboxylate symporter family SMD_RS17750 PF07584 Aerotolerance regulator N-terminal SMD_RS17750 PF13519 von Willebrand factor type A domain SMD_RS17770 PF07726 ATPase family associated with various cellular activities (AAA) SMD_RS17770 PF17863 AAA lid domain SMD_RS17775 PF11741 AMIN domain SMD_RS17775 PF00263 Bacterial type II and III secretion system protein SMD_RS17775 PF03958 Bacterial type II/III secretion system short domain SMD_RS17775 PF07660 Secretin and TonB N terminus short domain SMD_RS17780 PF04351 Pilus assembly protein, PilP SMD_RS17785 PF04350 Pilus assembly protein, PilO SMD_RS17795 PF11104 Type IV pilus assembly protein PilM; SMD_RS17800 PF00905 Penicillin binding protein transpeptidase domain SMD_RS17800 PF17092 Penicillin-binding protein OB-like domain SMD_RS17800 PF00912 Transglycosylase SMD_RS17815 PF13018 Extended Signal Peptide of Type V secretion system SMD_RS17815 PF03895 YadA-like membrane anchor domain SMD_RS17815 PF05658 Head domain of trimeric autotransporter adhesin SMD_RS17815 PF05662 Coiled stalk of trimeric autotransporter adhesin SMD_RS17845 PF00285 Citrate synthase, C-terminal domain SMD_RS17850 PF01197 Ribosomal protein L31 SMD_RS17855 PF01156 Inosine-uridine preferring nucleoside hydrolase SMD_RS17860 PF00270 DEAD/DEAH box helicase SMD_RS17860 PF00271 Helicase conserved C-terminal domain SMD_RS17860 PF17191 RecG wedge domain SMD_RS17865 PF01042 Endoribonuclease L-PSP SMD_RS17870 PF13291 ACT domain SMD_RS17870 PF02824 TGS domain SMD_RS17870 PF04607 Region found in RelA / SpoT proteins SMD_RS17875 PF01192 RNA polymerase Rpb6 SMD_RS17880 PF00625 Guanylate kinase SMD_RS17885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMD_RS17885 PF01568 Molydopterin dinucleotide binding domain SMD_RS17885 PF00384 Molybdopterin oxidoreductase SMD_RS17890 PF01568 Molydopterin dinucleotide binding domain SMD_RS17890 PF00384 Molybdopterin oxidoreductase SMD_RS17890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMD_RS17895 PF13247 4Fe-4S dicluster domain SMD_RS17895 PF09163 Formate dehydrogenase N, transmembrane SMD_RS17900 PF01292 Prokaryotic cytochrome b561 SMD_RS17905 PF04216 Protein involved in formate dehydrogenase formation SMD_RS17910 PF12390 Selenocysteine synthase N terminal SMD_RS17910 PF03841 L-seryl-tRNA selenium transferase SMD_RS17915 PF03144 Elongation factor Tu domain 2 SMD_RS17915 PF09106 Elongation factor SelB, winged helix SMD_RS17915 PF09107 Elongation factor SelB, winged helix SMD_RS17915 PF00009 Elongation factor Tu GTP binding domain SMD_RS17925 PF00586 AIR synthase related protein, N-terminal domain SMD_RS17925 PF02769 AIR synthase related protein, C-terminal domain SMD_RS17930 PF03755 YicC-like family, N-terminal region SMD_RS17930 PF08340 Domain of unknown function (DUF1732) SMD_RS17935 PF03725 3' exoribonuclease family, domain 2 SMD_RS17935 PF01138 3' exoribonuclease family, domain 1 SMD_RS17940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMD_RS17945 PF01725 Ham1 family SMD_RS17950 PF04055 Radical SAM superfamily SMD_RS17950 PF06969 HemN C-terminal domain SMD_RS17965 PF00557 Metallopeptidase family M24 SMD_RS17970 PF00557 Metallopeptidase family M24 SMD_RS17970 PF05195 Aminopeptidase P, N-terminal domain SMD_RS17975 PF03695 Uncharacterised protein family (UPF0149) SMD_RS17985 PF05164 Cell division protein ZapA SMD_RS17990 PF01812 5-formyltetrahydrofolate cyclo-ligase family SMD_RS18000 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SMD_RS18010 PF13369 Transglutaminase-like superfamily SMD_RS18015 PF00301 Rubredoxin SMD_RS18020 PF02581 Thiamine monophosphate synthase SMD_RS18025 PF00202 Aminotransferase class-III SMD_RS18030 PF00127 Copper binding proteins, plastocyanin/azurin family SMD_RS18035 PF13419 Haloacid dehalogenase-like hydrolase SMD_RS18040 PF00202 Aminotransferase class-III SMD_RS18045 PF00520 Ion transport protein SMD_RS18045 PF00027 Cyclic nucleotide-binding domain SMD_RS18050 PF12889 Protein of unknown function (DUF3829) SMD_RS18055 PF12889 Protein of unknown function (DUF3829) SMD_RS18090 PF01569 PAP2 superfamily SMD_RS18100 PF02875 Mur ligase family, glutamate ligase domain SMD_RS18100 PF08245 Mur ligase middle domain SMD_RS18100 PF01225 Mur ligase family, catalytic domain SMD_RS18110 PF00365 Phosphofructokinase SMD_RS18125 PF03030 Inorganic H+ pyrophosphatase SMD_RS18135 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS18140 PF01618 MotA/TolQ/ExbB proton channel family SMD_RS18145 PF04304 Protein of unknown function (DUF454) SMD_RS18150 PF01126 Heme oxygenase SMD_RS18160 PF07715 TonB-dependent Receptor Plug Domain SMD_RS18160 PF00593 TonB dependent receptor SMD_RS18185 PF00719 Inorganic pyrophosphatase SMD_RS18200 PF07715 TonB-dependent Receptor Plug Domain SMD_RS18200 PF00593 TonB dependent receptor SMD_RS18205 PF01965 DJ-1/PfpI family SMD_RS18205 PF12833 Helix-turn-helix domain SMD_RS18210 PF00486 Transcriptional regulatory protein, C terminal SMD_RS18210 PF00072 Response regulator receiver domain SMD_RS18220 PF13667 ThiC-associated domain SMD_RS18220 PF01964 Radical SAM ThiC family SMD_RS18230 PF02028 BCCT, betaine/carnitine/choline family transporter SMD_RS18240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SMD_RS18240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SMD_RS18245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMD_RS18245 PF00205 Thiamine pyrophosphate enzyme, central domain SMD_RS18245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMD_RS18255 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS18260 PF08502 LeuA allosteric (dimerisation) domain SMD_RS18260 PF00682 HMGL-like SMD_RS18270 PF00330 Aconitase family (aconitate hydratase) SMD_RS18275 PF00694 Aconitase C-terminal domain SMD_RS18280 PF00180 Isocitrate/isopropylmalate dehydrogenase SMD_RS18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS18290 PF03466 LysR substrate binding domain SMD_RS18295 PF00873 AcrB/AcrD/AcrF family SMD_RS18300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS18315 PF02321 Outer membrane efflux protein SMD_RS18320 PF13520 Amino acid permease SMD_RS18325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SMD_RS18330 PF03279 Bacterial lipid A biosynthesis acyltransferase SMD_RS18360 PF03949 Malic enzyme, NAD binding domain SMD_RS18360 PF00390 Malic enzyme, N-terminal domain SMD_RS18360 PF01515 Phosphate acetyl/butaryl transferase SMD_RS18365 PF00375 Sodium:dicarboxylate symporter family SMD_RS18375 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS18380 PF00196 Bacterial regulatory proteins, luxR family SMD_RS18380 PF00072 Response regulator receiver domain SMD_RS18390 PF08521 Two-component sensor kinase N-terminal SMD_RS18390 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS18390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS18395 PF00486 Transcriptional regulatory protein, C terminal SMD_RS18395 PF00072 Response regulator receiver domain SMD_RS18405 PF03600 Citrate transporter SMD_RS18410 PF00106 short chain dehydrogenase SMD_RS18425 PF03193 RsgA GTPase SMD_RS18430 PF00155 Aminotransferase class I and II SMD_RS18445 PF01522 Polysaccharide deacetylase SMD_RS18450 PF00462 Glutaredoxin SMD_RS18465 PF03797 Autotransporter beta-domain SMD_RS18465 PF12951 Passenger-associated-transport-repeat SMD_RS18465 PF00082 Subtilase family SMD_RS18470 PF01979 Amidohydrolase family SMD_RS18475 PF00449 Urease alpha-subunit, N-terminal domain SMD_RS18475 PF01979 Amidohydrolase family SMD_RS18480 PF01323 DSBA-like thioredoxin domain SMD_RS18485 PF02645 Uncharacterised protein, DegV family COG1307 SMD_RS18495 PF02321 Outer membrane efflux protein SMD_RS18500 PF13533 Biotin-lipoyl like SMD_RS18510 PF03466 LysR substrate binding domain SMD_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS18525 PF01590 GAF domain SMD_RS18525 PF00360 Phytochrome region SMD_RS18525 PF00563 EAL domain SMD_RS18525 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS18530 PF00756 Putative esterase SMD_RS18540 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS18540 PF00107 Zinc-binding dehydrogenase SMD_RS18545 PF02583 Metal-sensitive transcriptional repressor SMD_RS18550 PF03466 LysR substrate binding domain SMD_RS18550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS18555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMD_RS18580 PF03466 LysR substrate binding domain SMD_RS18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS18585 PF00107 Zinc-binding dehydrogenase SMD_RS18585 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS18590 PF04107 Glutamate-cysteine ligase family 2(GCS2) SMD_RS18600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMD_RS18600 PF12833 Helix-turn-helix domain SMD_RS18605 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMD_RS18605 PF00753 Metallo-beta-lactamase superfamily SMD_RS18605 PF10996 Beta-Casp domain SMD_RS18610 PF01926 50S ribosome-binding GTPase SMD_RS18615 PF00034 Cytochrome c SMD_RS18620 PF01323 DSBA-like thioredoxin domain SMD_RS18625 PF01323 DSBA-like thioredoxin domain SMD_RS18635 PF00892 EamA-like transporter family SMD_RS18640 PF01037 Lrp/AsnC ligand binding domain SMD_RS18650 PF07715 TonB-dependent Receptor Plug Domain SMD_RS18650 PF00593 TonB dependent receptor SMD_RS18655 PF07715 TonB-dependent Receptor Plug Domain SMD_RS18655 PF00593 TonB dependent receptor SMD_RS18665 PF02472 Biopolymer transport protein ExbD/TolR SMD_RS18670 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SMD_RS18670 PF01464 Transglycosylase SLT domain SMD_RS18675 PF01966 HD domain SMD_RS18675 PF01743 Poly A polymerase head domain SMD_RS18675 PF12627 Probable RNA and SrmB- binding site of polymerase A SMD_RS18705 PF03797 Autotransporter beta-domain SMD_RS18705 PF13018 Extended Signal Peptide of Type V secretion system SMD_RS18705 PF16168 Adhesin of bacterial autotransporter system, probable stalk SMD_RS18715 PF01979 Amidohydrolase family SMD_RS18720 PF01380 SIS domain SMD_RS18725 PF00356 Bacterial regulatory proteins, lacI family SMD_RS18730 PF07690 Major Facilitator Superfamily SMD_RS18735 PF02685 Glucokinase SMD_RS18745 PF07691 PA14 domain SMD_RS18745 PF02838 Glycosyl hydrolase family 20, domain 2 SMD_RS18745 PF00728 Glycosyl hydrolase family 20, catalytic domain SMD_RS18765 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMD_RS18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS18775 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS18780 PF00072 Response regulator receiver domain SMD_RS18785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS18785 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS18785 PF08446 PAS fold SMD_RS18785 PF01590 GAF domain SMD_RS18785 PF00360 Phytochrome region SMD_RS18790 PF04972 BON domain SMD_RS18795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMD_RS18795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMD_RS18800 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SMD_RS18800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMD_RS18815 PF00595 PDZ domain SMD_RS18815 PF17804 Tail specific protease N-terminal domain SMD_RS18815 PF11818 C-terminal domain of tail specific protease (DUF3340) SMD_RS18815 PF03572 Peptidase family S41 SMD_RS18820 PF04055 Radical SAM superfamily SMD_RS18820 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SMD_RS18825 PF03099 Biotin/lipoate A/B protein ligase family SMD_RS18830 PF04359 Protein of unknown function (DUF493) SMD_RS18840 PF07943 Penicillin-binding protein 5, C-terminal domain SMD_RS18840 PF00768 D-alanyl-D-alanine carboxypeptidase SMD_RS18845 PF03330 Lytic transglycolase SMD_RS18845 PF05036 Sporulation related domain SMD_RS18850 PF13406 Transglycosylase SLT domain SMD_RS18855 PF01098 Cell cycle protein SMD_RS18860 PF01098 Cell cycle protein SMD_RS18865 PF00905 Penicillin binding protein transpeptidase domain SMD_RS18865 PF03717 Penicillin-binding Protein dimerisation domain SMD_RS18875 PF04085 rod shape-determining protein MreC SMD_RS18885 PF00294 pfkB family carbohydrate kinase SMD_RS18900 PF01433 Peptidase family M1 domain SMD_RS18900 PF11838 ERAP1-like C-terminal domain SMD_RS18905 PF01209 ubiE/COQ5 methyltransferase family SMD_RS18930 PF02321 Outer membrane efflux protein SMD_RS18935 PF00873 AcrB/AcrD/AcrF family SMD_RS18940 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS18940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS18945 PF08361 MAATS-type transcriptional repressor, C-terminal region SMD_RS18945 PF00440 Bacterial regulatory proteins, tetR family SMD_RS18950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMD_RS18950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMD_RS18955 PF00004 ATPase family associated with various cellular activities (AAA) SMD_RS18955 PF10431 C-terminal, D2-small domain, of ClpB protein SMD_RS18955 PF07724 AAA domain (Cdc48 subfamily) SMD_RS18960 PF00227 Proteasome subunit SMD_RS18965 PF02899 Phage integrase, N-terminal SAM-like domain SMD_RS18965 PF00589 Phage integrase family SMD_RS18975 PF01678 Diaminopimelate epimerase SMD_RS18985 PF04304 Protein of unknown function (DUF454) SMD_RS18990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SMD_RS18990 PF00326 Prolyl oligopeptidase family SMD_RS18995 PF00155 Aminotransferase class I and II SMD_RS19000 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SMD_RS19000 PF00326 Prolyl oligopeptidase family SMD_RS19015 PF00528 Binding-protein-dependent transport system inner membrane component SMD_RS19020 PF00005 ABC transporter SMD_RS19020 PF09383 NIL domain SMD_RS19025 PF00892 EamA-like transporter family SMD_RS19030 PF04461 Protein of unknown function (DUF520) SMD_RS19045 PF01432 Peptidase family M3 SMD_RS19055 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS19060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMD_RS19070 PF01380 SIS domain SMD_RS19070 PF00571 CBS domain SMD_RS19075 PF01380 SIS domain SMD_RS19080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS19085 PF00005 ABC transporter SMD_RS19090 PF00005 ABC transporter SMD_RS19090 PF02687 FtsX-like permease family SMD_RS19090 PF12704 MacB-like periplasmic core domain SMD_RS19095 PF00005 ABC transporter SMD_RS19095 PF12704 MacB-like periplasmic core domain SMD_RS19095 PF02687 FtsX-like permease family SMD_RS19105 PF00072 Response regulator receiver domain SMD_RS19105 PF00158 Sigma-54 interaction domain SMD_RS19105 PF02954 Bacterial regulatory protein, Fis family SMD_RS19110 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS19110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS19110 PF00989 PAS fold SMD_RS19120 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS19120 PF12804 MobA-like NTP transferase domain SMD_RS19120 PF14602 Hexapeptide repeat of succinyl-transferase SMD_RS19135 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SMD_RS19135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SMD_RS19140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMD_RS19140 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMD_RS19145 PF00231 ATP synthase SMD_RS19150 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMD_RS19150 PF00306 ATP synthase alpha/beta chain, C terminal domain SMD_RS19150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMD_RS19155 PF00213 ATP synthase delta (OSCP) subunit SMD_RS19160 PF00430 ATP synthase B/B' CF(0) SMD_RS19165 PF00137 ATP synthase subunit C SMD_RS19170 PF00119 ATP synthase A chain SMD_RS19185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMD_RS19185 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS19205 PF01266 FAD dependent oxidoreductase SMD_RS19205 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMD_RS19210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMD_RS19210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMD_RS19215 PF03180 NLPA lipoprotein SMD_RS19235 PF03900 Porphobilinogen deaminase, C-terminal domain SMD_RS19235 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SMD_RS19240 PF04397 LytTr DNA-binding domain SMD_RS19240 PF00072 Response regulator receiver domain SMD_RS19245 PF06580 Histidine kinase SMD_RS19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS19250 PF02230 Phospholipase/Carboxylesterase SMD_RS19255 PF13632 Glycosyl transferase family group 2 SMD_RS19260 PF07715 TonB-dependent Receptor Plug Domain SMD_RS19260 PF00593 TonB dependent receptor SMD_RS19265 PF10947 Protein of unknown function (DUF2628) SMD_RS19270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS19270 PF08447 PAS fold SMD_RS19300 PF07690 Major Facilitator Superfamily SMD_RS19325 PF12951 Passenger-associated-transport-repeat SMD_RS19325 PF00082 Subtilase family SMD_RS19325 PF03797 Autotransporter beta-domain SMD_RS19330 PF00005 ABC transporter SMD_RS19335 PF12704 MacB-like periplasmic core domain SMD_RS19335 PF00005 ABC transporter SMD_RS19335 PF02687 FtsX-like permease family SMD_RS19340 PF02687 FtsX-like permease family SMD_RS19340 PF00005 ABC transporter SMD_RS19340 PF12704 MacB-like periplasmic core domain SMD_RS19345 PF00005 ABC transporter SMD_RS19345 PF00664 ABC transporter transmembrane region SMD_RS19355 PF01695 IstB-like ATP binding protein SMD_RS19360 PF00665 Integrase core domain SMD_RS19365 PF00072 Response regulator receiver domain SMD_RS19365 PF00486 Transcriptional regulatory protein, C terminal SMD_RS19405 PF07681 DoxX SMD_RS19415 PF02469 Fasciclin domain SMD_RS19545 PF13276 HTH-like domain SMD_RS19545 PF13683 Integrase core domain SMD_RS19550 PF01527 Transposase SMD_RS19570 PF13356 Arm DNA-binding domain SMD_RS19570 PF00589 Phage integrase family SMD_RS19585 PF03979 Sigma-70 factor, region 1.1 SMD_RS19585 PF04542 Sigma-70 region 2 SMD_RS19585 PF04539 Sigma-70 region 3 SMD_RS19585 PF04545 Sigma-70, region 4 SMD_RS19585 PF00140 Sigma-70 factor, region 1.2 SMD_RS19585 PF04546 Sigma-70, non-essential region SMD_RS19590 PF02580 D-Tyr-tRNA(Tyr) deacylase SMD_RS19600 PF00925 GTP cyclohydrolase II SMD_RS19620 PF00535 Glycosyl transferase family 2 SMD_RS19635 PF01029 NusB family SMD_RS19635 PF01189 16S rRNA methyltransferase RsmB/F SMD_RS19640 PF00551 Formyl transferase SMD_RS19640 PF02911 Formyl transferase, C-terminal domain SMD_RS19645 PF01327 Polypeptide deformylase SMD_RS19655 PF02481 DNA recombination-mediator protein A SMD_RS19655 PF17782 DprA winged helix domain SMD_RS19660 PF04361 Protein of unknown function (DUF494) SMD_RS19665 PF00114 Pilin (bacterial filament) SMD_RS19665 PF07963 Prokaryotic N-terminal methylation motif SMD_RS19670 PF06271 RDD family SMD_RS19675 PF01751 Toprim domain SMD_RS19675 PF13368 Topoisomerase C-terminal repeat SMD_RS19675 PF01131 DNA topoisomerase SMD_RS19680 PF01300 Telomere recombination SMD_RS19705 PF01343 Peptidase family S49 SMD_RS19710 PF01554 MatE SMD_RS19725 PF00270 DEAD/DEAH box helicase SMD_RS19725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SMD_RS19725 PF18074 Primosomal protein N C-terminal domain SMD_RS19725 PF17764 3′ DNA-binding domain (3′BD) SMD_RS19725 PF00271 Helicase conserved C-terminal domain SMD_RS19730 PF00043 Glutathione S-transferase, C-terminal domain SMD_RS19730 PF13417 Glutathione S-transferase, N-terminal domain SMD_RS19740 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMD_RS19755 PF01541 GIY-YIG catalytic domain SMD_RS19760 PF03458 UPF0126 domain SMD_RS19765 PF00793 DAHP synthetase I family SMD_RS19785 PF01047 MarR family SMD_RS19790 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS19790 PF00672 HAMP domain SMD_RS19795 PF00072 Response regulator receiver domain SMD_RS19795 PF00486 Transcriptional regulatory protein, C terminal SMD_RS19815 PF00118 TCP-1/cpn60 chaperonin family SMD_RS19820 PF00166 Chaperonin 10 Kd subunit SMD_RS19825 PF04231 Endonuclease I SMD_RS19830 PF03091 CutA1 divalent ion tolerance protein SMD_RS19835 PF02683 Cytochrome C biogenesis protein transmembrane region SMD_RS19835 PF11412 Disulphide bond corrector protein DsbC SMD_RS19840 PF08534 Redoxin SMD_RS19845 PF00175 Oxidoreductase NAD-binding domain SMD_RS19845 PF00258 Flavodoxin SMD_RS19845 PF00667 FAD binding domain SMD_RS19850 PF02203 Tar ligand binding domain homologue SMD_RS19850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS19850 PF00672 HAMP domain SMD_RS19855 PF00797 N-acetyltransferase SMD_RS19870 PF03466 LysR substrate binding domain SMD_RS19870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS19880 PF07943 Penicillin-binding protein 5, C-terminal domain SMD_RS19880 PF00768 D-alanyl-D-alanine carboxypeptidase SMD_RS19890 PF02525 Flavodoxin-like fold SMD_RS19910 PF01220 Dehydroquinase class II SMD_RS19920 PF00364 Biotin-requiring enzyme SMD_RS19925 PF00289 Biotin carboxylase, N-terminal domain SMD_RS19925 PF02785 Biotin carboxylase C-terminal domain SMD_RS19925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMD_RS19950 PF02954 Bacterial regulatory protein, Fis family SMD_RS19960 PF01553 Acyltransferase SMD_RS19970 PF00782 Dual specificity phosphatase, catalytic domain SMD_RS19975 PF12146 Serine aminopeptidase, S33 SMD_RS19975 PF12147 Putative methyltransferase SMD_RS19980 PF01066 CDP-alcohol phosphatidyltransferase SMD_RS19985 PF02142 MGS-like domain SMD_RS19985 PF01808 AICARFT/IMPCHase bienzyme SMD_RS19990 PF02843 Phosphoribosylglycinamide synthetase, C domain SMD_RS19990 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SMD_RS19990 PF02844 Phosphoribosylglycinamide synthetase, N domain SMD_RS20005 PF04542 Sigma-70 region 2 SMD_RS20005 PF00140 Sigma-70 factor, region 1.2 SMD_RS20005 PF04545 Sigma-70, region 4 SMD_RS20010 PF03167 Uracil DNA glycosylase superfamily SMD_RS20015 PF01339 CheB methylesterase SMD_RS20015 PF00072 Response regulator receiver domain SMD_RS20020 PF18075 FtsX extracellular domain SMD_RS20025 PF00005 ABC transporter SMD_RS20030 PF00271 Helicase conserved C-terminal domain SMD_RS20030 PF12300 ATP-dependent RNA helicase RhlB SMD_RS20030 PF00270 DEAD/DEAH box helicase SMD_RS20035 PF00085 Thioredoxin SMD_RS20045 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS20045 PF07694 5TMR of 5TMR-LYT SMD_RS20055 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SMD_RS20085 PF03971 Monomeric isocitrate dehydrogenase SMD_RS20095 PF01476 LysM domain SMD_RS20095 PF04972 BON domain SMD_RS20100 PF14489 QueF-like protein SMD_RS20100 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SMD_RS20105 PF01546 Peptidase family M20/M25/M40 SMD_RS20105 PF07687 Peptidase dimerisation domain SMD_RS20110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS20115 PF00873 AcrB/AcrD/AcrF family SMD_RS20120 PF00873 AcrB/AcrD/AcrF family SMD_RS20125 PF12805 FUSC-like inner membrane protein yccS SMD_RS20130 PF00106 short chain dehydrogenase SMD_RS20135 PF07690 Major Facilitator Superfamily SMD_RS20160 PF09297 NADH pyrophosphatase zinc ribbon domain SMD_RS20160 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SMD_RS20160 PF00293 NUDIX domain SMD_RS20165 PF01521 Iron-sulphur cluster biosynthesis SMD_RS20185 PF00563 EAL domain SMD_RS20185 PF00072 Response regulator receiver domain SMD_RS20185 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS20190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMD_RS20190 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS20190 PF00672 HAMP domain SMD_RS20190 PF00072 Response regulator receiver domain SMD_RS20190 PF01627 Hpt domain SMD_RS20195 PF00210 Ferritin-like domain SMD_RS20205 PF00293 NUDIX domain SMD_RS20220 PF00380 Ribosomal protein S9/S16 SMD_RS20225 PF00572 Ribosomal protein L13 SMD_RS20230 PF03232 Ubiquinone biosynthesis protein COQ7 SMD_RS20235 PF00893 Small Multidrug Resistance protein SMD_RS20240 PF02675 S-adenosylmethionine decarboxylase SMD_RS20245 PF00027 Cyclic nucleotide-binding domain SMD_RS20245 PF00325 Bacterial regulatory proteins, crp family SMD_RS20250 PF01925 Sulfite exporter TauE/SafE SMD_RS20260 PF00218 Indole-3-glycerol phosphate synthase SMD_RS20265 PF00591 Glycosyl transferase family, a/b domain SMD_RS20265 PF02885 Glycosyl transferase family, helical bundle domain SMD_RS20270 PF00117 Glutamine amidotransferase class-I SMD_RS20280 PF00425 chorismate binding enzyme SMD_RS20280 PF04715 Anthranilate synthase component I, N terminal region SMD_RS20285 PF00781 Diacylglycerol kinase catalytic domain SMD_RS20295 PF00834 Ribulose-phosphate 3 epimerase family SMD_RS20300 PF05099 Tellurite resistance protein TerB SMD_RS20300 PF00226 DnaJ domain SMD_RS20305 PF01259 SAICAR synthetase SMD_RS20315 PF13244 Domain of unknown function (DUF4040) SMD_RS20315 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SMD_RS20315 PF00361 Proton-conducting membrane transporter SMD_RS20315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMD_RS20320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMD_RS20325 PF00361 Proton-conducting membrane transporter SMD_RS20330 PF01899 Na+/H+ ion antiporter subunit SMD_RS20335 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SMD_RS20340 PF03334 Na+/H+ antiporter subunit SMD_RS20345 PF01699 Sodium/calcium exchanger protein SMD_RS20360 PF04209 homogentisate 1,2-dioxygenase SMD_RS20365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMD_RS20370 PF01047 MarR family SMD_RS20385 PF00854 POT family SMD_RS20390 PF03301 Tryptophan 2,3-dioxygenase SMD_RS20395 PF00676 Dehydrogenase E1 component SMD_RS20400 PF02779 Transketolase, pyrimidine binding domain SMD_RS20400 PF02780 Transketolase, C-terminal domain SMD_RS20410 PF02817 e3 binding domain SMD_RS20410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMD_RS20410 PF00364 Biotin-requiring enzyme SMD_RS20420 PF08279 HTH domain SMD_RS20420 PF13280 WYL domain SMD_RS20430 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS20435 PF05661 Protein of unknown function (DUF808) SMD_RS20440 PF03109 ABC1 family SMD_RS20450 PF12795 Mechanosensitive ion channel porin domain SMD_RS20450 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMD_RS20450 PF00924 Mechanosensitive ion channel SMD_RS20465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMD_RS20465 PF01266 FAD dependent oxidoreductase SMD_RS20485 PF00486 Transcriptional regulatory protein, C terminal SMD_RS20485 PF00072 Response regulator receiver domain SMD_RS20490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS20500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMD_RS20500 PF17944 Arginine decarboxylase C-terminal helical extension SMD_RS20500 PF17810 Arginine decarboxylase helical bundle domain SMD_RS20505 PF17284 Spermidine synthase tetramerisation domain SMD_RS20515 PF01695 IstB-like ATP binding protein SMD_RS20520 PF00665 Integrase core domain SMD_RS20530 PF00543 Nitrogen regulatory protein P-II SMD_RS20535 PF04380 Membrane fusogenic activity SMD_RS20575 PF13335 Magnesium chelatase, subunit ChlI C-terminal SMD_RS20575 PF01078 Magnesium chelatase, subunit ChlI SMD_RS20580 PF00293 NUDIX domain SMD_RS20580 PF03099 Biotin/lipoate A/B protein ligase family SMD_RS20600 PF06055 Exopolysaccharide synthesis, ExoD SMD_RS20605 PF07995 Glucose / Sorbosone dehydrogenase SMD_RS20620 PF01483 Proprotein convertase P-domain SMD_RS20620 PF00082 Subtilase family SMD_RS20630 PF02630 SCO1/SenC SMD_RS20635 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SMD_RS20640 PF00510 Cytochrome c oxidase subunit III SMD_RS20645 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMD_RS20650 PF06481 COX Aromatic Rich Motif SMD_RS20650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMD_RS20655 PF00392 Bacterial regulatory proteins, gntR family SMD_RS20655 PF00155 Aminotransferase class I and II SMD_RS20670 PF00392 Bacterial regulatory proteins, gntR family SMD_RS20670 PF00155 Aminotransferase class I and II SMD_RS20730 PF02667 Short chain fatty acid transporter SMD_RS20735 PF01040 UbiA prenyltransferase family SMD_RS20775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMD_RS20780 PF00593 TonB dependent receptor SMD_RS20780 PF07715 TonB-dependent Receptor Plug Domain SMD_RS20785 PF17137 Domain of unknown function (DUF5110) SMD_RS20785 PF01055 Glycosyl hydrolases family 31 SMD_RS20785 PF16338 Domain of unknown function (DUF4968) SMD_RS20790 PF01380 SIS domain SMD_RS20795 PF00480 ROK family SMD_RS20800 PF08013 Tagatose 6 phosphate kinase SMD_RS20805 PF00455 DeoR C terminal sensor domain SMD_RS20805 PF08220 DeoR-like helix-turn-helix domain SMD_RS20810 PF01979 Amidohydrolase family SMD_RS20815 PF00083 Sugar (and other) transporter SMD_RS20830 PF00156 Phosphoribosyl transferase domain SMD_RS20835 PF00654 Voltage gated chloride channel SMD_RS20850 PF06968 Biotin and Thiamin Synthesis associated domain SMD_RS20850 PF04055 Radical SAM superfamily SMD_RS20855 PF00155 Aminotransferase class I and II SMD_RS20860 PF12697 Alpha/beta hydrolase family SMD_RS20870 PF13649 Methyltransferase domain SMD_RS20880 PF00291 Pyridoxal-phosphate dependent enzyme SMD_RS20890 PF13932 GidA associated domain SMD_RS20890 PF01134 Glucose inhibited division protein A SMD_RS20895 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SMD_RS20895 PF02321 Outer membrane efflux protein SMD_RS20900 PF00873 AcrB/AcrD/AcrF family SMD_RS20905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS20905 PF00529 HlyD membrane-fusion protein of T1SS SMD_RS20910 PF00672 HAMP domain SMD_RS20910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS20910 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS20915 PF00486 Transcriptional regulatory protein, C terminal SMD_RS20915 PF00072 Response regulator receiver domain SMD_RS20920 PF10127 RNA repair pathway DNA polymerase beta family SMD_RS20925 PF00132 Bacterial transferase hexapeptide (six repeats) SMD_RS20950 PF07726 ATPase family associated with various cellular activities (AAA) SMD_RS20950 PF17863 AAA lid domain SMD_RS20965 PF03738 Glutathionylspermidine synthase preATP-grasp SMD_RS20975 PF00920 Dehydratase family SMD_RS20980 PF13307 Helicase C-terminal domain SMD_RS20980 PF06733 DEAD_2 SMD_RS20990 PF08501 Shikimate dehydrogenase substrate binding domain SMD_RS20990 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SMD_RS20990 PF01488 Shikimate / quinate 5-dehydrogenase SMD_RS21005 PF00490 Delta-aminolevulinic acid dehydratase SMD_RS21010 PF01062 Bestrophin, RFP-TM, chloride channel SMD_RS21035 PF00326 Prolyl oligopeptidase family SMD_RS21035 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SMD_RS21040 PF02798 Glutathione S-transferase, N-terminal domain SMD_RS21040 PF00043 Glutathione S-transferase, C-terminal domain SMD_RS21045 PF03350 Uncharacterized protein family, UPF0114 SMD_RS21060 PF02311 AraC-like ligand binding domain SMD_RS21060 PF12833 Helix-turn-helix domain SMD_RS21075 PF00005 ABC transporter SMD_RS21080 PF00561 alpha/beta hydrolase fold SMD_RS21090 PF18416 N-acetylglucosamine binding protein domain 2 SMD_RS21090 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading SMD_RS21095 PF18416 N-acetylglucosamine binding protein domain 2 SMD_RS21095 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading SMD_RS21100 PF00175 Oxidoreductase NAD-binding domain SMD_RS21100 PF00111 2Fe-2S iron-sulfur cluster binding domain SMD_RS21100 PF00970 Oxidoreductase FAD-binding domain SMD_RS21105 PF00005 ABC transporter SMD_RS21110 PF01061 ABC-2 type transporter SMD_RS21120 PF08546 Ketopantoate reductase PanE/ApbA C terminal SMD_RS21120 PF02558 Ketopantoate reductase PanE/ApbA SMD_RS21130 PF01026 TatD related DNase SMD_RS21135 PF08482 ATP-dependent helicase C-terminal SMD_RS21135 PF00271 Helicase conserved C-terminal domain SMD_RS21135 PF04408 Helicase associated domain (HA2) SMD_RS21135 PF00270 DEAD/DEAH box helicase SMD_RS21145 PF00849 RNA pseudouridylate synthase SMD_RS21155 PF00248 Aldo/keto reductase family SMD_RS21170 PF01139 tRNA-splicing ligase RtcB SMD_RS21185 PF02203 Tar ligand binding domain homologue SMD_RS21185 PF00672 HAMP domain SMD_RS21185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS21190 PF00248 Aldo/keto reductase family SMD_RS21195 PF00561 alpha/beta hydrolase fold SMD_RS21200 PF01906 Putative heavy-metal-binding SMD_RS21205 PF13607 Succinyl-CoA ligase like flavodoxin domain SMD_RS21205 PF00583 Acetyltransferase (GNAT) family SMD_RS21205 PF13380 CoA binding domain SMD_RS21210 PF03448 MgtE intracellular N domain SMD_RS21210 PF01769 Divalent cation transporter SMD_RS21210 PF00571 CBS domain SMD_RS21215 PF02254 TrkA-N domain SMD_RS21215 PF00999 Sodium/hydrogen exchanger family SMD_RS21220 PF02661 Fic/DOC family SMD_RS21220 PF12796 Ankyrin repeats (3 copies) SMD_RS21225 PF05166 YcgL domain SMD_RS21235 PF00109 Beta-ketoacyl synthase, N-terminal domain SMD_RS21235 PF02801 Beta-ketoacyl synthase, C-terminal domain SMD_RS21250 PF02801 Beta-ketoacyl synthase, C-terminal domain SMD_RS21250 PF00109 Beta-ketoacyl synthase, N-terminal domain SMD_RS21260 PF01494 FAD binding domain SMD_RS21280 PF00221 Aromatic amino acid lyase SMD_RS21290 PF00535 Glycosyl transferase family 2 SMD_RS21305 PF00550 Phosphopantetheine attachment site SMD_RS21310 PF00550 Phosphopantetheine attachment site SMD_RS21325 PF02322 Cytochrome bd terminal oxidase subunit II SMD_RS21330 PF01654 Cytochrome bd terminal oxidase subunit I SMD_RS21340 PF08281 Sigma-70, region 4 SMD_RS21340 PF04542 Sigma-70 region 2 SMD_RS21360 PF00293 NUDIX domain SMD_RS21360 PF13344 Haloacid dehalogenase-like hydrolase SMD_RS21380 PF01218 Coproporphyrinogen III oxidase SMD_RS21390 PF04239 Protein of unknown function (DUF421) SMD_RS21395 PF01612 3'-5' exonuclease SMD_RS21395 PF00476 DNA polymerase family A SMD_RS21395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMD_RS21395 PF01367 5'-3' exonuclease, C-terminal SAM fold SMD_RS21405 PF00582 Universal stress protein family SMD_RS21425 PF00580 UvrD/REP helicase N-terminal domain SMD_RS21425 PF13361 UvrD-like helicase C-terminal domain SMD_RS21435 PF13091 PLD-like domain SMD_RS21435 PF13396 Phospholipase_D-nuclease N-terminal SMD_RS21445 PF00471 Ribosomal protein L33 SMD_RS21450 PF00830 Ribosomal L28 family SMD_RS21455 PF03033 Glycosyltransferase family 28 N-terminal domain SMD_RS21460 PF00929 Exonuclease SMD_RS21465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS21465 PF03466 LysR substrate binding domain SMD_RS21470 PF01042 Endoribonuclease L-PSP SMD_RS21480 PF02321 Outer membrane efflux protein SMD_RS21485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMD_RS21490 PF00873 AcrB/AcrD/AcrF family SMD_RS21505 PF00535 Glycosyl transferase family 2 SMD_RS21510 PF01370 NAD dependent epimerase/dehydratase family SMD_RS21520 PF17762 HTH domain found in ParB protein SMD_RS21520 PF02195 ParB-like nuclease domain SMD_RS21525 PF13614 AAA domain SMD_RS21530 PF02527 rRNA small subunit methyltransferase G SMD_RS21535 PF01648 4'-phosphopantetheinyl transferase superfamily SMD_RS21540 PF04226 Transglycosylase associated protein SMD_RS21550 PF00171 Aldehyde dehydrogenase family SMD_RS21555 PF00083 Sugar (and other) transporter SMD_RS21555 PF08946 Osmosensory transporter coiled coil SMD_RS21565 PF13193 AMP-binding enzyme C-terminal domain SMD_RS21565 PF00501 AMP-binding enzyme SMD_RS21565 PF16177 Acetyl-coenzyme A synthetase N-terminus SMD_RS21570 PF00072 Response regulator receiver domain SMD_RS21570 PF00196 Bacterial regulatory proteins, luxR family SMD_RS21580 PF02659 Putative manganese efflux pump SMD_RS21585 PF00072 Response regulator receiver domain SMD_RS21585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMD_RS21585 PF00512 His Kinase A (phospho-acceptor) domain SMD_RS21585 PF09456 RcsC Alpha-Beta-Loop (ABL) SMD_RS21590 PF10459 Peptidase S46 SMD_RS21595 PF00012 Hsp70 protein SMD_RS21610 PF04357 TamB, inner membrane protein subunit of TAM complex SMD_RS21615 PF01103 Surface antigen SMD_RS21615 PF17243 POTRA domain TamA domain 1 SMD_RS21615 PF07244 Surface antigen variable number repeat SMD_RS21620 PF02092 Glycyl-tRNA synthetase beta subunit SMD_RS21620 PF05746 DALR anticodon binding domain SMD_RS21625 PF02091 Glycyl-tRNA synthetase alpha subunit SMD_RS21630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SMD_RS21630 PF00437 Type II/IV secretion system protein SMD_RS21635 PF00958 GMP synthase C terminal domain SMD_RS21635 PF00117 Glutamine amidotransferase class-I SMD_RS21645 PF00902 Sec-independent protein translocase protein (TatC) SMD_RS21650 PF02416 mttA/Hcf106 family SMD_RS21655 PF02416 mttA/Hcf106 family SMD_RS21665 PF00762 Ferrochelatase SMD_RS21670 PF12697 Alpha/beta hydrolase family SMD_RS21675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMD_RS21675 PF02203 Tar ligand binding domain homologue SMD_RS21675 PF00672 HAMP domain SMD_RS21730 PF03594 Benzoate membrane transport protein SMD_RS21745 PF01263 Aldose 1-epimerase SMD_RS21750 PF13406 Transglycosylase SLT domain SMD_RS21755 PF10017 Histidine-specific methyltransferase, SAM-dependent SMD_RS21760 PF03781 Sulfatase-modifying factor enzyme 1 SMD_RS21760 PF12867 DinB superfamily SMD_RS21765 PF00990 Diguanylate cyclase, GGDEF domain SMD_RS21770 PF02810 SEC-C motif SMD_RS21775 PF01925 Sulfite exporter TauE/SafE SMD_RS21795 PF01227 GTP cyclohydrolase I SMD_RS21805 PF07869 Protein of unknown function (DUF1656) SMD_RS21810 PF13533 Biotin-lipoyl like SMD_RS21815 PF02321 Outer membrane efflux protein SMD_RS21830 PF13538 UvrD-like helicase C-terminal domain SMD_RS21835 PF12705 PD-(D/E)XK nuclease superfamily SMD_RS21835 PF00580 UvrD/REP helicase N-terminal domain SMD_RS21835 PF13361 UvrD-like helicase C-terminal domain SMD_RS21840 PF17946 RecC C-terminal domain SMD_RS21845 PF00005 ABC transporter SMD_RS21850 PF02405 Permease MlaE SMD_RS21855 PF02470 MlaD protein SMD_RS21870 PF04333 MlaA lipoprotein SMD_RS21875 PF00255 Glutathione peroxidase SMD_RS21885 PF02646 RmuC family SMD_RS21895 PF00107 Zinc-binding dehydrogenase SMD_RS21895 PF08240 Alcohol dehydrogenase GroES-like domain SMD_RS21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS21900 PF03466 LysR substrate binding domain SMD_RS21905 PF01810 LysE type translocator SMD_RS21915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMD_RS21915 PF03466 LysR substrate binding domain SMD_RS21920 PF00248 Aldo/keto reductase family SMD_RS21925 PF13520 Amino acid permease SMD_RS21935 PF17785 PUA-like domain SMD_RS21935 PF10672 S-adenosylmethionine-dependent methyltransferase SMD_RS21940 PF03741 Integral membrane protein TerC family SMD_RS21945 PF01694 Rhomboid family SMD_RS21950 PF03009 Glycerophosphoryl diester phosphodiesterase family SMD_RS21955 PF01926 50S ribosome-binding GTPase SMD_RS21955 PF12631 MnmE helical domain SMD_RS21955 PF10396 GTP-binding protein TrmE N-terminus SMD_RS21960 PF01522 Polysaccharide deacetylase SMD_RS21965 PF14849 YidC periplasmic domain SMD_RS21965 PF02096 60Kd inner membrane protein SMD_RS21970 PF00825 Ribonuclease P SMD_RS21975 PF00468 Ribosomal protein L34