locus-tag class description DK42_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DK42_RS00005 PF00308 Bacterial dnaA protein DK42_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DK42_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DK42_RS00010 PF02767 DNA polymerase III beta subunit, central domain DK42_RS00025 PF01381 Helix-turn-helix DK42_RS00035 PF01926 50S ribosome-binding GTPase DK42_RS00035 PF06071 Protein of unknown function (DUF933) DK42_RS00040 PF01195 Peptidyl-tRNA hydrolase DK42_RS00045 PF00271 Helicase conserved C-terminal domain DK42_RS00045 PF02559 CarD-like/TRCF domain DK42_RS00045 PF03461 TRCF domain DK42_RS00045 PF00270 DEAD/DEAH box helicase DK42_RS00045 PF17757 UvrB interaction domain DK42_RS00050 PF01479 S4 domain DK42_RS00070 PF01171 PP-loop family DK42_RS00075 PF00156 Phosphoribosyl transferase domain DK42_RS00080 PF00004 ATPase family associated with various cellular activities (AAA) DK42_RS00080 PF01434 Peptidase family M41 DK42_RS00080 PF06480 FtsH Extracellular DK42_RS00080 PF17862 AAA+ lid domain DK42_RS00260 PF14572 Phosphoribosyl synthetase-associated domain DK42_RS00260 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK42_RS00265 PF00155 Aminotransferase class I and II DK42_RS00270 PF02565 Recombination protein O C terminal DK42_RS00270 PF11967 Recombination protein O N terminal DK42_RS00285 PF02504 Fatty acid synthesis protein DK42_RS00290 PF00550 Phosphopantetheine attachment site DK42_RS00295 PF01259 SAICAR synthetase DK42_RS00300 PF02769 AIR synthase related protein, C-terminal domain DK42_RS00300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DK42_RS00300 PF00586 AIR synthase related protein, N-terminal domain DK42_RS00310 PF13537 Glutamine amidotransferase domain DK42_RS00310 PF00156 Phosphoribosyl transferase domain DK42_RS00315 PF00586 AIR synthase related protein, N-terminal domain DK42_RS00315 PF02769 AIR synthase related protein, C-terminal domain DK42_RS00320 PF00551 Formyl transferase DK42_RS00330 PF01808 AICARFT/IMPCHase bienzyme DK42_RS00330 PF02142 MGS-like domain DK42_RS00335 PF01476 LysM domain DK42_RS00335 PF01551 Peptidase family M23 DK42_RS00345 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DK42_RS00355 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS00360 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS00375 PF00701 Dihydrodipicolinate synthetase family DK42_RS00380 PF00480 ROK family DK42_RS00385 PF05448 Acetyl xylan esterase (AXE1) DK42_RS00395 PF02844 Phosphoribosylglycinamide synthetase, N domain DK42_RS00395 PF02843 Phosphoribosylglycinamide synthetase, C domain DK42_RS00395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK42_RS00400 PF00731 AIR carboxylase DK42_RS00405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DK42_RS00405 PF02222 ATP-grasp domain DK42_RS00430 PF00206 Lyase DK42_RS00430 PF10397 Adenylosuccinate lyase C-terminus DK42_RS00440 PF17864 RuvB AAA lid domain DK42_RS00440 PF05491 RuvB C-terminal winged helix domain DK42_RS00440 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK42_RS00445 PF01451 Low molecular weight phosphotyrosine protein phosphatase DK42_RS00455 PF01757 Acyltransferase family DK42_RS00460 PF00465 Iron-containing alcohol dehydrogenase DK42_RS00460 PF00171 Aldehyde dehydrogenase family DK42_RS00465 PF00107 Zinc-binding dehydrogenase DK42_RS00465 PF08240 Alcohol dehydrogenase GroES-like domain DK42_RS00470 PF00291 Pyridoxal-phosphate dependent enzyme DK42_RS00470 PF14821 Threonine synthase N terminus DK42_RS00475 PF01554 MatE DK42_RS00480 PF00338 Ribosomal protein S10p/S20e DK42_RS00485 PF00297 Ribosomal protein L3 DK42_RS00490 PF00573 Ribosomal protein L4/L1 family DK42_RS00495 PF00276 Ribosomal protein L23 DK42_RS00500 PF03947 Ribosomal Proteins L2, C-terminal domain DK42_RS00500 PF00181 Ribosomal Proteins L2, RNA binding domain DK42_RS00505 PF00203 Ribosomal protein S19 DK42_RS00510 PF00237 Ribosomal protein L22p/L17e DK42_RS00515 PF07650 KH domain DK42_RS00515 PF00189 Ribosomal protein S3, C-terminal domain DK42_RS00520 PF00252 Ribosomal protein L16p/L10e DK42_RS00525 PF00831 Ribosomal L29 protein DK42_RS00530 PF00366 Ribosomal protein S17 DK42_RS00535 PF00238 Ribosomal protein L14p/L23e DK42_RS00540 PF00467 KOW motif DK42_RS00540 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DK42_RS00545 PF00281 Ribosomal protein L5 DK42_RS00545 PF00673 ribosomal L5P family C-terminus DK42_RS00550 PF00253 Ribosomal protein S14p/S29e DK42_RS00555 PF00410 Ribosomal protein S8 DK42_RS00560 PF00347 Ribosomal protein L6 DK42_RS00565 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DK42_RS00570 PF03719 Ribosomal protein S5, C-terminal domain DK42_RS00570 PF00333 Ribosomal protein S5, N-terminal domain DK42_RS00575 PF00327 Ribosomal protein L30p/L7e DK42_RS00580 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DK42_RS00585 PF00344 SecY translocase DK42_RS00595 PF01176 Translation initiation factor 1A / IF-1 DK42_RS00600 PF00416 Ribosomal protein S13/S18 DK42_RS00605 PF00411 Ribosomal protein S11 DK42_RS00610 PF01000 RNA polymerase Rpb3/RpoA insert domain DK42_RS00610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DK42_RS00610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DK42_RS00615 PF01196 Ribosomal protein L17 DK42_RS00730 PF11208 Protein of unknown function (DUF2992) DK42_RS00735 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS00750 PF02557 D-alanyl-D-alanine carboxypeptidase DK42_RS00755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK42_RS00755 PF13457 GW (Gly-Tryp) dipeptide domain DK42_RS00760 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DK42_RS00760 PF01628 HrcA protein C terminal domain DK42_RS00765 PF01025 GrpE DK42_RS00770 PF00012 Hsp70 protein DK42_RS00775 PF00226 DnaJ domain DK42_RS00775 PF01556 DnaJ C terminal domain DK42_RS00775 PF00684 DnaJ central domain DK42_RS00780 PF00392 Bacterial regulatory proteins, gntR family DK42_RS00780 PF00155 Aminotransferase class I and II DK42_RS00785 PF01416 tRNA pseudouridine synthase DK42_RS00790 PF08543 Phosphomethylpyrimidine kinase DK42_RS00795 PF07155 ECF-type riboflavin transporter, S component DK42_RS00800 PF04260 Protein of unknown function (DUF436) DK42_RS00805 PF00924 Mechanosensitive ion channel DK42_RS00810 PF05697 Bacterial trigger factor protein (TF) DK42_RS00810 PF05698 Bacterial trigger factor protein (TF) C-terminus DK42_RS00810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DK42_RS00815 PF05066 HB1, ASXL, restriction endonuclease HTH domain DK42_RS00820 PF06418 CTP synthase N-terminus DK42_RS00820 PF00117 Glutamine amidotransferase class-I DK42_RS00835 PF00692 dUTPase DK42_RS00840 PF18073 Rubredoxin metal binding domain DK42_RS00845 PF00484 Carbonic anhydrase DK42_RS00850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK42_RS00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS00855 PF00749 tRNA synthetases class I (E and Q), catalytic domain DK42_RS00860 PF13407 Periplasmic binding protein domain DK42_RS00865 PF02653 Branched-chain amino acid transport system / permease component DK42_RS00870 PF00005 ABC transporter DK42_RS00875 PF05025 RbsD / FucU transport protein family DK42_RS00880 PF00294 pfkB family carbohydrate kinase DK42_RS00885 PF00356 Bacterial regulatory proteins, lacI family DK42_RS00890 PF02687 FtsX-like permease family DK42_RS00895 PF00005 ABC transporter DK42_RS00900 PF00486 Transcriptional regulatory protein, C terminal DK42_RS00900 PF00072 Response regulator receiver domain DK42_RS00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS00905 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS00910 PF00764 Arginosuccinate synthase DK42_RS00915 PF00206 Lyase DK42_RS00915 PF14698 Argininosuccinate lyase C-terminal DK42_RS00920 PF01116 Fructose-bisphosphate aldolase class-II DK42_RS00925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DK42_RS00925 PF00056 lactate/malate dehydrogenase, NAD binding domain DK42_RS00930 PF00830 Ribosomal L28 family DK42_RS00935 PF03780 Asp23 family, cell envelope-related function DK42_RS00940 PF13684 Dihydroxyacetone kinase family DK42_RS00940 PF02734 DAK2 domain DK42_RS00960 PF00005 ABC transporter DK42_RS00965 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS00975 PF02673 Bacitracin resistance protein BacA DK42_RS00980 PF05389 Negative regulator of genetic competence (MecA) DK42_RS00985 PF00953 Glycosyl transferase family 4 DK42_RS00990 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS01000 PF00005 ABC transporter DK42_RS01005 PF01458 Uncharacterized protein family (UPF0051) DK42_RS01010 PF00266 Aminotransferase class-V DK42_RS01015 PF01592 NifU-like N terminal domain DK42_RS01020 PF01458 Uncharacterized protein family (UPF0051) DK42_RS01025 PF07943 Penicillin-binding protein 5, C-terminal domain DK42_RS01025 PF00768 D-alanyl-D-alanine carboxypeptidase DK42_RS01030 PF00768 D-alanyl-D-alanine carboxypeptidase DK42_RS01030 PF07943 Penicillin-binding protein 5, C-terminal domain DK42_RS01035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK42_RS01040 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01045 PF12911 N-terminal TM domain of oligopeptide transport permease C DK42_RS01050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK42_RS01050 PF00005 ABC transporter DK42_RS01055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK42_RS01055 PF00005 ABC transporter DK42_RS01085 PF00288 GHMP kinases N terminal domain DK42_RS01085 PF08544 GHMP kinases C terminal DK42_RS01090 PF01047 MarR family DK42_RS01095 PF00005 ABC transporter DK42_RS01100 PF00950 ABC 3 transport family DK42_RS01110 PF00579 tRNA synthetases class I (W and Y) DK42_RS01110 PF01479 S4 domain DK42_RS01115 PF00912 Transglycosylase DK42_RS01115 PF00905 Penicillin binding protein transpeptidase domain DK42_RS01120 PF00562 RNA polymerase Rpb2, domain 6 DK42_RS01120 PF10385 RNA polymerase beta subunit external 1 domain DK42_RS01120 PF04560 RNA polymerase Rpb2, domain 7 DK42_RS01120 PF04565 RNA polymerase Rpb2, domain 3 DK42_RS01120 PF04563 RNA polymerase beta subunit DK42_RS01120 PF04561 RNA polymerase Rpb2, domain 2 DK42_RS01125 PF04983 RNA polymerase Rpb1, domain 3 DK42_RS01125 PF04998 RNA polymerase Rpb1, domain 5 DK42_RS01125 PF05000 RNA polymerase Rpb1, domain 4 DK42_RS01125 PF04997 RNA polymerase Rpb1, domain 1 DK42_RS01125 PF00623 RNA polymerase Rpb1, domain 2 DK42_RS01135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS01145 PF00437 Type II/IV secretion system protein DK42_RS01150 PF00482 Type II secretion system (T2SS), protein F DK42_RS01170 PF00871 Acetokinase family DK42_RS01185 PF14748 Pyrroline-5-carboxylate reductase dimerisation DK42_RS01185 PF03807 NADP oxidoreductase coenzyme F420-dependent DK42_RS01190 PF05343 M42 glutamyl aminopeptidase DK42_RS01205 PF00085 Thioredoxin DK42_RS01210 PF01588 Putative tRNA binding domain DK42_RS01210 PF14794 Domain of unknown function (DUF4479) DK42_RS01220 PF00436 Single-strand binding protein family DK42_RS01225 PF13419 Haloacid dehalogenase-like hydrolase DK42_RS01230 PF07694 5TMR of 5TMR-LYT DK42_RS01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS01230 PF06580 Histidine kinase DK42_RS01235 PF04397 LytTr DNA-binding domain DK42_RS01235 PF00072 Response regulator receiver domain DK42_RS01240 PF03788 LrgA family DK42_RS01245 PF04172 LrgB-like family DK42_RS01250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK42_RS01255 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01260 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01260 PF12911 N-terminal TM domain of oligopeptide transport permease C DK42_RS01265 PF00005 ABC transporter DK42_RS01265 PF12558 ATP-binding cassette cobalt transporter DK42_RS01270 PF00005 ABC transporter DK42_RS01275 PF00367 phosphotransferase system, EIIB DK42_RS01275 PF02378 Phosphotransferase system, EIIC DK42_RS01280 PF16657 Maltogenic Amylase, C-terminal domain DK42_RS01280 PF00128 Alpha amylase, catalytic domain DK42_RS01285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK42_RS01290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK42_RS01295 PF03611 PTS system sugar-specific permease component DK42_RS01300 PF00456 Transketolase, thiamine diphosphate binding domain DK42_RS01305 PF02779 Transketolase, pyrimidine binding domain DK42_RS01305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DK42_RS01305 PF02780 Transketolase, C-terminal domain DK42_RS01310 PF00175 Oxidoreductase NAD-binding domain DK42_RS01310 PF00111 2Fe-2S iron-sulfur cluster binding domain DK42_RS01310 PF00970 Oxidoreductase FAD-binding domain DK42_RS01315 PF00312 Ribosomal protein S15 DK42_RS01320 PF00013 KH domain DK42_RS01320 PF01138 3' exoribonuclease family, domain 1 DK42_RS01320 PF03725 3' exoribonuclease family, domain 2 DK42_RS01320 PF00575 S1 RNA binding domain DK42_RS01320 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DK42_RS01330 PF00132 Bacterial transferase hexapeptide (six repeats) DK42_RS01330 PF06426 Serine acetyltransferase, N-terminal DK42_RS01340 PF09190 DALR domain DK42_RS01340 PF01406 tRNA synthetases class I (C) catalytic domain DK42_RS01345 PF00636 Ribonuclease III domain DK42_RS01355 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK42_RS01355 PF00588 SpoU rRNA Methylase family DK42_RS01365 PF02645 Uncharacterised protein, DegV family COG1307 DK42_RS01370 PF01381 Helix-turn-helix DK42_RS01375 PF00572 Ribosomal protein L13 DK42_RS01380 PF00380 Ribosomal protein S9/S16 DK42_RS01385 PF00589 Phage integrase family DK42_RS01385 PF02899 Phage integrase, N-terminal SAM-like domain DK42_RS01420 PF02486 Replication initiation factor DK42_RS01430 PF01076 Plasmid recombination enzyme DK42_RS01450 PF06013 Proteins of 100 residues with WXG DK42_RS01485 PF01381 Helix-turn-helix DK42_RS01490 PF07690 Major Facilitator Superfamily DK42_RS01495 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DK42_RS01505 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01510 PF00005 ABC transporter DK42_RS01510 PF00571 CBS domain DK42_RS01600 PF00958 GMP synthase C terminal domain DK42_RS01600 PF13673 Acetyltransferase (GNAT) domain DK42_RS01600 PF03352 Methyladenine glycosylase DK42_RS01600 PF00117 Glutamine amidotransferase class-I DK42_RS01600 PF13302 Acetyltransferase (GNAT) domain DK42_RS01615 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DK42_RS01625 PF00440 Bacterial regulatory proteins, tetR family DK42_RS01635 PF00005 ABC transporter DK42_RS01645 PF03551 Transcriptional regulator PadR-like family DK42_RS01655 PF01979 Amidohydrolase family DK42_RS01660 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DK42_RS01665 PF02091 Glycyl-tRNA synthetase alpha subunit DK42_RS01670 PF02525 Flavodoxin-like fold DK42_RS01675 PF05746 DALR anticodon binding domain DK42_RS01675 PF02092 Glycyl-tRNA synthetase beta subunit DK42_RS01680 PF05979 Bacterial protein of unknown function (DUF896) DK42_RS01690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DK42_RS01690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DK42_RS01695 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DK42_RS01695 PF01266 FAD dependent oxidoreductase DK42_RS01700 PF00230 Major intrinsic protein DK42_RS01705 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS01705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK42_RS01715 PF02779 Transketolase, pyrimidine binding domain DK42_RS01715 PF00456 Transketolase, thiamine diphosphate binding domain DK42_RS01715 PF02780 Transketolase, C-terminal domain DK42_RS01725 PF00005 ABC transporter DK42_RS01735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK42_RS01735 PF02378 Phosphotransferase system, EIIC DK42_RS01735 PF00367 phosphotransferase system, EIIB DK42_RS01740 PF00696 Amino acid kinase family DK42_RS01745 PF00171 Aldehyde dehydrogenase family DK42_RS01750 PF01795 MraW methylase family DK42_RS01760 PF00905 Penicillin binding protein transpeptidase domain DK42_RS01760 PF03793 PASTA domain DK42_RS01760 PF03717 Penicillin-binding Protein dimerisation domain DK42_RS01765 PF00953 Glycosyl transferase family 4 DK42_RS01765 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DK42_RS01770 PF00270 DEAD/DEAH box helicase DK42_RS01770 PF00271 Helicase conserved C-terminal domain DK42_RS01775 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK42_RS01780 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS01785 PF00005 ABC transporter DK42_RS01795 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS01800 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DK42_RS01800 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DK42_RS01800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DK42_RS01805 PF02540 NAD synthase DK42_RS01815 PF03051 Peptidase C1-like family DK42_RS01820 PF00905 Penicillin binding protein transpeptidase domain DK42_RS01820 PF00912 Transglycosylase DK42_RS01825 PF03838 Recombination protein U DK42_RS01830 PF06908 YspA SLOG family DK42_RS01835 PF05103 DivIVA protein DK42_RS01840 PF02926 THUMP domain DK42_RS01840 PF01170 Putative RNA methylase family UPF0020 DK42_RS01845 PF18041 MapZ extracellular domain 1 DK42_RS01845 PF18708 MapZ extracellular C-terminal domain 2 DK42_RS01850 PF02664 S-Ribosylhomocysteinase (LuxS) DK42_RS01855 PF00013 KH domain DK42_RS01855 PF01966 HD domain DK42_RS01855 PF12072 Domain of unknown function (DUF3552) DK42_RS01860 PF00005 ABC transporter DK42_RS01870 PF07730 Histidine kinase DK42_RS01870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS01875 PF00196 Bacterial regulatory proteins, luxR family DK42_RS01875 PF00072 Response regulator receiver domain DK42_RS01880 PF06736 Protein of unknown function (DUF1211) DK42_RS01885 PF00625 Guanylate kinase DK42_RS01890 PF01192 RNA polymerase Rpb6 DK42_RS01895 PF18074 Primosomal protein N C-terminal domain DK42_RS01895 PF00271 Helicase conserved C-terminal domain DK42_RS01895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DK42_RS01895 PF17764 3′ DNA-binding domain (3′BD) DK42_RS01895 PF04851 Type III restriction enzyme, res subunit DK42_RS01900 PF00551 Formyl transferase DK42_RS01900 PF02911 Formyl transferase, C-terminal domain DK42_RS01905 PF01189 16S rRNA methyltransferase RsmB/F DK42_RS01905 PF01029 NusB family DK42_RS01915 PF03793 PASTA domain DK42_RS01915 PF00069 Protein kinase domain DK42_RS01925 PF00672 HAMP domain DK42_RS01925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS01925 PF07730 Histidine kinase DK42_RS01930 PF00196 Bacterial regulatory proteins, luxR family DK42_RS01930 PF00072 Response regulator receiver domain DK42_RS01935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK42_RS01940 PF00575 S1 RNA binding domain DK42_RS01945 PF04055 Radical SAM superfamily DK42_RS01950 PF00455 DeoR C terminal sensor domain DK42_RS01950 PF08220 DeoR-like helix-turn-helix domain DK42_RS01955 PF04198 Putative sugar-binding domain DK42_RS01955 PF13936 Helix-turn-helix domain DK42_RS01960 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DK42_RS01970 PF02378 Phosphotransferase system, EIIC DK42_RS01975 PF01228 Glycine radical DK42_RS01975 PF02901 Pyruvate formate lyase-like DK42_RS01980 PF00923 Transaldolase/Fructose-6-phosphate aldolase DK42_RS01985 PF00465 Iron-containing alcohol dehydrogenase DK42_RS01990 PF00291 Pyridoxal-phosphate dependent enzyme DK42_RS01995 PF01205 Uncharacterized protein family UPF0029 DK42_RS01995 PF09186 Domain of unknown function (DUF1949) DK42_RS02000 PF00271 Helicase conserved C-terminal domain DK42_RS02000 PF04851 Type III restriction enzyme, res subunit DK42_RS02010 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DK42_RS02010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DK42_RS02040 PF00696 Amino acid kinase family DK42_RS02040 PF13840 ACT domain DK42_RS02045 PF13419 Haloacid dehalogenase-like hydrolase DK42_RS02050 PF00378 Enoyl-CoA hydratase/isomerase DK42_RS02060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DK42_RS02060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DK42_RS02065 PF00550 Phosphopantetheine attachment site DK42_RS02070 PF03060 Nitronate monooxygenase DK42_RS02075 PF00698 Acyl transferase domain DK42_RS02085 PF00109 Beta-ketoacyl synthase, N-terminal domain DK42_RS02085 PF02801 Beta-ketoacyl synthase, C-terminal domain DK42_RS02090 PF00364 Biotin-requiring enzyme DK42_RS02095 PF07977 FabA-like domain DK42_RS02100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK42_RS02100 PF02785 Biotin carboxylase C-terminal domain DK42_RS02100 PF00289 Biotin carboxylase, N-terminal domain DK42_RS02105 PF01039 Carboxyl transferase domain DK42_RS02105 PF17848 Acetyl-coA carboxylase zinc finger domain DK42_RS02110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DK42_RS02125 PF02403 Seryl-tRNA synthetase N-terminal domain DK42_RS02125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK42_RS02145 PF03613 PTS system mannose/fructose/sorbose family IID component DK42_RS02150 PF03609 PTS system sorbose-specific iic component DK42_RS02155 PF03610 PTS system fructose IIA component DK42_RS02155 PF03830 PTS system sorbose subfamily IIB component DK42_RS02175 PF00860 Permease family DK42_RS02180 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DK42_RS02185 PF13302 Acetyltransferase (GNAT) domain DK42_RS02190 PF03816 Cell envelope-related transcriptional attenuator domain DK42_RS02200 PF01230 HIT domain DK42_RS02215 PF00005 ABC transporter DK42_RS02220 PF05975 Bacterial ABC transporter protein EcsB DK42_RS02230 PF02390 Putative methyltransferase DK42_RS02240 PF17384 RimP C-terminal SH3 domain DK42_RS02240 PF02576 RimP N-terminal domain DK42_RS02245 PF00575 S1 RNA binding domain DK42_RS02245 PF08529 NusA N-terminal domain DK42_RS02245 PF13184 NusA-like KH domain DK42_RS02250 PF04296 Protein of unknown function (DUF448) DK42_RS02255 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DK42_RS02260 PF00009 Elongation factor Tu GTP binding domain DK42_RS02260 PF04760 Translation initiation factor IF-2, N-terminal region DK42_RS02260 PF11987 Translation-initiation factor 2 DK42_RS02265 PF02033 Ribosome-binding factor A DK42_RS02270 PF07859 alpha/beta hydrolase fold DK42_RS02275 PF03965 Penicillinase repressor DK42_RS02280 PF00403 Heavy-metal-associated domain DK42_RS02290 PF03458 UPF0126 domain DK42_RS02300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DK42_RS02300 PF01367 5'-3' exonuclease, C-terminal SAM fold DK42_RS02300 PF00476 DNA polymerase family A DK42_RS02305 PF13380 CoA binding domain DK42_RS02310 PF01475 Ferric uptake regulator family DK42_RS02315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS02325 PF00486 Transcriptional regulatory protein, C terminal DK42_RS02325 PF00072 Response regulator receiver domain DK42_RS02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS02330 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS02340 PF01702 Queuine tRNA-ribosyltransferase DK42_RS02350 PF02632 BioY family DK42_RS02355 PF12706 Beta-lactamase superfamily domain DK42_RS02360 PF14437 MafB19-like deaminase DK42_RS02370 PF00342 Phosphoglucose isomerase DK42_RS02375 PF01812 5-formyltetrahydrofolate cyclo-ligase family DK42_RS02380 PF01694 Rhomboid family DK42_RS02385 PF02608 ABC transporter substrate-binding protein PnrA-like DK42_RS02395 PF00483 Nucleotidyl transferase DK42_RS02400 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DK42_RS02400 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DK42_RS02405 PF00825 Ribonuclease P DK42_RS02410 PF02096 60Kd inner membrane protein DK42_RS02475 PF04167 Protein of unknown function (DUF402) DK42_RS02480 PF02631 RecX family DK42_RS02485 PF01938 TRAM domain DK42_RS02485 PF05958 tRNA (Uracil-5-)-methyltransferase DK42_RS02495 PF13673 Acetyltransferase (GNAT) domain DK42_RS02505 PF00535 Glycosyl transferase family 2 DK42_RS02505 PF01501 Glycosyl transferase family 8 DK42_RS02510 PF00268 Ribonucleotide reductase, small chain DK42_RS02515 PF07972 NrdI Flavodoxin like DK42_RS02520 PF02867 Ribonucleotide reductase, barrel domain DK42_RS02520 PF08343 Ribonucleotide reductase N-terminal DK42_RS02520 PF00317 Ribonucleotide reductase, all-alpha domain DK42_RS02540 PF13276 HTH-like domain DK42_RS02540 PF00665 Integrase core domain DK42_RS02540 PF13333 Integrase core domain DK42_RS02550 PF02627 Carboxymuconolactone decarboxylase family DK42_RS02560 PF13411 MerR HTH family regulatory protein DK42_RS02570 PF00248 Aldo/keto reductase family DK42_RS02575 PF01545 Cation efflux family DK42_RS02585 PF12833 Helix-turn-helix domain DK42_RS02590 PF17480 AlphaC C-terminal DK42_RS02590 PF08829 Alpha C protein N terminal DK42_RS02590 PF04650 YSIRK type signal peptide DK42_RS02590 PF08829 Alpha C protein N terminal DK42_RS02590 PF17480 AlphaC C-terminal DK42_RS02590 PF00746 LPXTG cell wall anchor motif DK42_RS02590 PF04650 YSIRK type signal peptide DK42_RS02590 PF00746 LPXTG cell wall anchor motif DK42_RS02625 PF13302 Acetyltransferase (GNAT) domain DK42_RS02635 PF08264 Anticodon-binding domain of tRNA DK42_RS02635 PF00133 tRNA synthetases class I (I, L, M and V) DK42_RS02635 PF10458 Valyl tRNA synthetase tRNA binding arm DK42_RS02640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK42_RS02640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK42_RS02650 PF04237 YjbR DK42_RS02655 PF03590 Aspartate-ammonia ligase DK42_RS02675 PF01467 Cytidylyltransferase-like DK42_RS02680 PF05362 Lon protease (S16) C-terminal proteolytic domain DK42_RS02680 PF13180 PDZ domain DK42_RS02685 PF02872 5'-nucleotidase, C-terminal domain DK42_RS02690 PF06265 Protein of unknown function (DUF1027) DK42_RS02695 PF04055 Radical SAM superfamily DK42_RS02705 PF00005 ABC transporter DK42_RS02705 PF00664 ABC transporter transmembrane region DK42_RS02710 PF00005 ABC transporter DK42_RS02710 PF00664 ABC transporter transmembrane region DK42_RS02715 PF00117 Glutamine amidotransferase class-I DK42_RS02720 PF02632 BioY family DK42_RS02725 PF06968 Biotin and Thiamin Synthesis associated domain DK42_RS02725 PF04055 Radical SAM superfamily DK42_RS02735 PF00108 Thiolase, N-terminal domain DK42_RS02735 PF02803 Thiolase, C-terminal domain DK42_RS02745 PF00633 Helix-hairpin-helix motif DK42_RS02745 PF10576 Iron-sulfur binding domain of endonuclease III DK42_RS02745 PF00730 HhH-GPD superfamily base excision DNA repair protein DK42_RS02760 PF00480 ROK family DK42_RS02765 PF00581 Rhodanese-like domain DK42_RS02770 PF03144 Elongation factor Tu domain 2 DK42_RS02770 PF00009 Elongation factor Tu GTP binding domain DK42_RS02770 PF14492 Elongation Factor G, domain II DK42_RS02770 PF00679 Elongation factor G C-terminus DK42_RS02780 PF02875 Mur ligase family, glutamate ligase domain DK42_RS02780 PF08245 Mur ligase middle domain DK42_RS02785 PF04101 Glycosyltransferase family 28 C-terminal domain DK42_RS02785 PF03033 Glycosyltransferase family 28 N-terminal domain DK42_RS02790 PF08478 POTRA domain, FtsQ-type DK42_RS02795 PF11983 Membrane-attachment and polymerisation-promoting switch DK42_RS02795 PF02491 SHS2 domain inserted in FTSA DK42_RS02800 PF00091 Tubulin/FtsZ family, GTPase domain DK42_RS02800 PF12327 FtsZ family, C-terminal domain DK42_RS02805 PF01168 Alanine racemase, N-terminal domain DK42_RS02810 PF04472 Cell division protein SepF DK42_RS02815 PF02325 YGGT family DK42_RS02820 PF01479 S4 domain DK42_RS02820 PF17774 Putative RNA-binding domain in YlmH DK42_RS02825 PF05103 DivIVA protein DK42_RS02830 PF08264 Anticodon-binding domain of tRNA DK42_RS02830 PF00133 tRNA synthetases class I (I, L, M and V) DK42_RS02840 PF00293 NUDIX domain DK42_RS02845 PF10431 C-terminal, D2-small domain, of ClpB protein DK42_RS02845 PF17871 AAA lid domain DK42_RS02845 PF00004 ATPase family associated with various cellular activities (AAA) DK42_RS02845 PF07724 AAA domain (Cdc48 subfamily) DK42_RS02850 PF08796 Protein of unknown function (DUF1797) DK42_RS02855 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS02860 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS02865 PF00005 ABC transporter DK42_RS02870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK42_RS02870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK42_RS02870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK42_RS02870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK42_RS02875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DK42_RS02875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DK42_RS02880 PF01256 Carbohydrate kinase DK42_RS02885 PF13742 OB-fold nucleic acid binding domain DK42_RS02885 PF02601 Exonuclease VII, large subunit DK42_RS02890 PF02609 Exonuclease VII small subunit DK42_RS02895 PF00348 Polyprenyl synthetase DK42_RS02900 PF01479 S4 domain DK42_RS02900 PF01728 FtsJ-like methyltransferase DK42_RS02905 PF01316 Arginine repressor, DNA binding domain DK42_RS02905 PF02863 Arginine repressor, C-terminal domain DK42_RS02910 PF13476 AAA domain DK42_RS02915 PF02645 Uncharacterised protein, DegV family COG1307 DK42_RS02920 PF13472 GDSL-like Lipase/Acylhydrolase family DK42_RS02930 PF00216 Bacterial DNA-binding protein DK42_RS02940 PF01180 Dihydroorotate dehydrogenase DK42_RS02950 PF02388 FemAB family DK42_RS02955 PF02388 FemAB family DK42_RS02965 PF01966 HD domain DK42_RS02975 PF00690 Cation transporter/ATPase, N-terminus DK42_RS02975 PF00689 Cation transporting ATPase, C-terminus DK42_RS02985 PF06874 Firmicute fructose-1,6-bisphosphatase DK42_RS02990 PF08331 Domain of unknown function (DUF1730) DK42_RS02995 PF03462 PCRF domain DK42_RS02995 PF00472 RF-1 domain DK42_RS03000 PF00005 ABC transporter DK42_RS03005 PF02687 FtsX-like permease family DK42_RS03005 PF18075 FtsX extracellular domain DK42_RS03015 PF00753 Metallo-beta-lactamase superfamily DK42_RS03025 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS03030 PF13307 Helicase C-terminal domain DK42_RS03030 PF00929 Exonuclease DK42_RS03030 PF04851 Type III restriction enzyme, res subunit DK42_RS03035 PF00155 Aminotransferase class I and II DK42_RS03040 PF01336 OB-fold nucleic acid binding domain DK42_RS03040 PF00152 tRNA synthetases class II (D, K and N) DK42_RS03050 PF01156 Inosine-uridine preferring nucleoside hydrolase DK42_RS03060 PF03668 P-loop ATPase protein family DK42_RS03065 PF01933 Uncharacterised protein family UPF0052 DK42_RS03070 PF10298 WhiA N-terminal LAGLIDADG-like domain DK42_RS03070 PF14527 WhiA LAGLIDADG-like domain DK42_RS03070 PF02650 WhiA C-terminal HTH domain DK42_RS03075 PF03577 Peptidase family C69 DK42_RS03080 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DK42_RS03080 PF01297 Zinc-uptake complex component A periplasmic DK42_RS03085 PF01197 Ribosomal protein L31 DK42_RS03090 PF01368 DHH family DK42_RS03090 PF02272 DHHA1 domain DK42_RS03095 PF00962 Adenosine/AMP deaminase DK42_RS03100 PF00258 Flavodoxin DK42_RS03105 PF01817 Chorismate mutase type II DK42_RS03105 PF00793 DAHP synthetase I family DK42_RS03110 PF00654 Voltage gated chloride channel DK42_RS03115 PF01245 Ribosomal protein L19 DK42_RS03125 PF14659 Phage integrase, N-terminal SAM-like domain DK42_RS03125 PF00589 Phage integrase family DK42_RS03440 PF00005 ABC transporter DK42_RS03450 PF00486 Transcriptional regulatory protein, C terminal DK42_RS03450 PF00072 Response regulator receiver domain DK42_RS03455 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS03455 PF00672 HAMP domain DK42_RS03460 PF01610 Transposase DK42_RS03460 PF13683 Integrase core domain DK42_RS03465 PF05532 CsbD-like DK42_RS03480 PF01098 Cell cycle protein DK42_RS03485 PF13808 DDE_Tnp_1-associated DK42_RS03485 PF01609 Transposase DDE domain DK42_RS03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS03495 PF00986 DNA gyrase B subunit, carboxyl terminus DK42_RS03495 PF00204 DNA gyrase B DK42_RS03495 PF01751 Toprim domain DK42_RS03500 PF06160 Septation ring formation regulator, EzrA DK42_RS03520 PF03952 Enolase, N-terminal domain DK42_RS03520 PF00113 Enolase, C-terminal TIM barrel domain DK42_RS03530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK42_RS03535 PF01202 Shikimate kinase DK42_RS03540 PF03816 Cell envelope-related transcriptional attenuator domain DK42_RS03545 PF05958 tRNA (Uracil-5-)-methyltransferase DK42_RS03555 PF02463 RecF/RecN/SMC N terminal domain DK42_RS03560 PF12705 PD-(D/E)XK nuclease superfamily DK42_RS03560 PF00580 UvrD/REP helicase N-terminal domain DK42_RS03560 PF13361 UvrD-like helicase C-terminal domain DK42_RS03570 PF13614 AAA domain DK42_RS03575 PF17762 HTH domain found in ParB protein DK42_RS03575 PF02195 ParB-like nuclease domain DK42_RS03640 PF03432 Relaxase/Mobilisation nuclease domain DK42_RS03690 PF04203 Sortase domain DK42_RS03695 PF00877 NlpC/P60 family DK42_RS03700 PF00072 Response regulator receiver domain DK42_RS03700 PF00486 Transcriptional regulatory protein, C terminal DK42_RS03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS03705 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS03710 PF02557 D-alanyl-D-alanine carboxypeptidase DK42_RS03715 PF04294 VanW like protein DK42_RS03720 PF07478 D-ala D-ala ligase C-terminus DK42_RS03720 PF01820 D-ala D-ala ligase N-terminus DK42_RS03725 PF02557 D-alanyl-D-alanine carboxypeptidase DK42_RS03730 PF01168 Alanine racemase, N-terminal domain DK42_RS03730 PF01757 Acyltransferase family DK42_RS03730 PF00842 Alanine racemase, C-terminal domain DK42_RS03750 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DK42_RS03755 PF05958 tRNA (Uracil-5-)-methyltransferase DK42_RS03825 PF01131 DNA topoisomerase DK42_RS03825 PF01751 Toprim domain DK42_RS03860 PF00270 DEAD/DEAH box helicase DK42_RS03860 PF08148 DSHCT (NUC185) domain DK42_RS03860 PF00271 Helicase conserved C-terminal domain DK42_RS03865 PF03432 Relaxase/Mobilisation nuclease domain DK42_RS03875 PF17922 Tetracyclin repressor-like, C-terminal domain DK42_RS03875 PF00440 Bacterial regulatory proteins, tetR family DK42_RS03880 PF04954 Siderophore-interacting protein DK42_RS03880 PF08021 Siderophore-interacting FAD-binding domain DK42_RS03880 PF00005 ABC transporter DK42_RS03880 PF00664 ABC transporter transmembrane region DK42_RS03885 PF00005 ABC transporter DK42_RS03885 PF00664 ABC transporter transmembrane region DK42_RS03900 PF00005 ABC transporter DK42_RS03905 PF01554 MatE DK42_RS03920 PF00239 Resolvase, N terminal domain DK42_RS03920 PF02796 Helix-turn-helix domain of resolvase DK42_RS03940 PF00144 Beta-lactamase DK42_RS03945 PF00005 ABC transporter DK42_RS03975 PF00550 Phosphopantetheine attachment site DK42_RS03980 PF07977 FabA-like domain DK42_RS03985 PF00005 ABC transporter DK42_RS04000 PF08669 Glycine cleavage T-protein C-terminal barrel domain DK42_RS04000 PF01571 Aminomethyltransferase folate-binding domain DK42_RS04005 PF00109 Beta-ketoacyl synthase, N-terminal domain DK42_RS04005 PF02801 Beta-ketoacyl synthase, C-terminal domain DK42_RS04035 PF00005 ABC transporter DK42_RS04045 PF01223 DNA/RNA non-specific endonuclease DK42_RS04050 PF09335 SNARE associated Golgi protein DK42_RS04055 PF00005 ABC transporter DK42_RS04060 PF03649 Uncharacterised protein family (UPF0014) DK42_RS04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK42_RS04070 PF03466 LysR substrate binding domain DK42_RS04080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK42_RS04080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK42_RS04090 PF00294 pfkB family carbohydrate kinase DK42_RS04095 PF02837 Glycosyl hydrolases family 2, sugar binding domain DK42_RS04095 PF00703 Glycosyl hydrolases family 2 DK42_RS04095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DK42_RS04100 PF07729 FCD domain DK42_RS04100 PF00392 Bacterial regulatory proteins, gntR family DK42_RS04105 PF01081 KDPG and KHG aldolase DK42_RS04110 PF02614 Glucuronate isomerase DK42_RS04115 PF03786 D-mannonate dehydratase (UxuA) DK42_RS04120 PF00106 short chain dehydrogenase DK42_RS04130 PF00933 Glycosyl hydrolase family 3 N terminal domain DK42_RS04140 PF01321 Creatinase/Prolidase N-terminal domain DK42_RS04140 PF00557 Metallopeptidase family M24 DK42_RS04145 PF00356 Bacterial regulatory proteins, lacI family DK42_RS04150 PF09154 Domain of unknown function (DUF1939) DK42_RS04150 PF00128 Alpha amylase, catalytic domain DK42_RS04155 PF00534 Glycosyl transferases group 1 DK42_RS04155 PF13439 Glycosyltransferase Family 4 DK42_RS04160 PF00534 Glycosyl transferases group 1 DK42_RS04160 PF13439 Glycosyltransferase Family 4 DK42_RS04165 PF03129 Anticodon binding domain DK42_RS04165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK42_RS04165 PF02824 TGS domain DK42_RS04165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK42_RS04170 PF00072 Response regulator receiver domain DK42_RS04170 PF00486 Transcriptional regulatory protein, C terminal DK42_RS04180 PF03413 Peptidase propeptide and YPEB domain DK42_RS04185 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS04190 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS04195 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK42_RS04200 PF00005 ABC transporter DK42_RS04205 PF00486 Transcriptional regulatory protein, C terminal DK42_RS04205 PF00072 Response regulator receiver domain DK42_RS04210 PF00672 HAMP domain DK42_RS04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS04210 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS04210 PF13426 PAS domain DK42_RS04215 PF00753 Metallo-beta-lactamase superfamily DK42_RS04220 PF04304 Protein of unknown function (DUF454) DK42_RS04225 PF00035 Double-stranded RNA binding motif DK42_RS04225 PF14622 Ribonuclease-III-like DK42_RS04230 PF06470 SMC proteins Flexible Hinge Domain DK42_RS04230 PF02463 RecF/RecN/SMC N terminal domain DK42_RS04235 PF01609 Transposase DDE domain DK42_RS04235 PF13808 DDE_Tnp_1-associated DK42_RS04250 PF02881 SRP54-type protein, helical bundle domain DK42_RS04250 PF00448 SRP54-type protein, GTPase domain DK42_RS04260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS04265 PF09323 Domain of unknown function (DUF1980) DK42_RS04270 PF03773 Predicted permease DK42_RS04285 PF09371 Tex-like protein N-terminal domain DK42_RS04285 PF00575 S1 RNA binding domain DK42_RS04285 PF17674 HHH domain DK42_RS04285 PF16921 Tex protein YqgF-like domain DK42_RS04290 PF10263 SprT-like family DK42_RS04295 PF04024 PspC domain DK42_RS04300 PF07475 HPr Serine kinase C-terminal domain DK42_RS04300 PF02603 HPr Serine kinase N terminus DK42_RS04305 PF01790 Prolipoprotein diacylglyceryl transferase DK42_RS04315 PF12732 YtxH-like protein DK42_RS04330 PF01136 Peptidase family U32 DK42_RS04330 PF16325 Peptidase family U32 C-terminal domain DK42_RS04335 PF02229 Transcriptional Coactivator p15 (PC4) DK42_RS04345 PF01566 Natural resistance-associated macrophage protein DK42_RS04350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK42_RS04350 PF01872 RibD C-terminal domain DK42_RS04360 PF00925 GTP cyclohydrolase II DK42_RS04360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DK42_RS04365 PF00885 6,7-dimethyl-8-ribityllumazine synthase DK42_RS04370 PF00152 tRNA synthetases class II (D, K and N) DK42_RS04370 PF01336 OB-fold nucleic acid binding domain DK42_RS04380 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS04395 PF04073 Aminoacyl-tRNA editing domain DK42_RS04400 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DK42_RS04425 PF08439 Oligopeptidase F DK42_RS04425 PF01432 Peptidase family M3 DK42_RS04430 PF00311 Phosphoenolpyruvate carboxylase DK42_RS04435 PF01098 Cell cycle protein DK42_RS04440 PF00009 Elongation factor Tu GTP binding domain DK42_RS04440 PF03144 Elongation factor Tu domain 2 DK42_RS04440 PF03143 Elongation factor Tu C-terminal domain DK42_RS04445 PF00121 Triosephosphate isomerase DK42_RS04450 PF00300 Histidine phosphatase superfamily (branch 1) DK42_RS04455 PF03717 Penicillin-binding Protein dimerisation domain DK42_RS04455 PF00905 Penicillin binding protein transpeptidase domain DK42_RS04460 PF02132 RecR protein DK42_RS04460 PF13662 Toprim domain DK42_RS04465 PF01820 D-ala D-ala ligase N-terminus DK42_RS04465 PF07478 D-ala D-ala ligase C-terminus DK42_RS04470 PF08245 Mur ligase middle domain DK42_RS04470 PF02875 Mur ligase family, glutamate ligase domain DK42_RS04470 PF01225 Mur ligase family, catalytic domain DK42_RS04475 PF07690 Major Facilitator Superfamily DK42_RS04490 PF00009 Elongation factor Tu GTP binding domain DK42_RS04490 PF16658 Class II release factor RF3, C-terminal domain DK42_RS04490 PF03144 Elongation factor Tu domain 2 DK42_RS04495 PF08000 Bacterial PH domain DK42_RS04500 PF00005 ABC transporter DK42_RS04500 PF09383 NIL domain DK42_RS04505 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS04510 PF03180 NLPA lipoprotein DK42_RS04515 PF00271 Helicase conserved C-terminal domain DK42_RS04515 PF00270 DEAD/DEAH box helicase DK42_RS04520 PF01541 GIY-YIG catalytic domain DK42_RS04525 PF05175 Methyltransferase small domain DK42_RS04530 PF01553 Acyltransferase DK42_RS04535 PF10531 SLBB domain DK42_RS04540 PF03772 Competence protein DK42_RS04540 PF13567 Domain of unknown function (DUF4131) DK42_RS04540 PF00753 Metallo-beta-lactamase superfamily DK42_RS04550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DK42_RS04550 PF00356 Bacterial regulatory proteins, lacI family DK42_RS04555 PF00934 PE family DK42_RS04555 PF07859 alpha/beta hydrolase fold DK42_RS04560 PF01209 ubiE/COQ5 methyltransferase family DK42_RS04570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DK42_RS04570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DK42_RS04575 PF03123 CAT RNA binding domain DK42_RS04575 PF00874 PRD domain DK42_RS04580 PF02378 Phosphotransferase system, EIIC DK42_RS04580 PF00367 phosphotransferase system, EIIB DK42_RS04580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK42_RS04585 PF00232 Glycosyl hydrolase family 1 DK42_RS04590 PF05651 Putative sugar diacid recognition DK42_RS04590 PF13556 PucR C-terminal helix-turn-helix domain DK42_RS04590 PF17853 GGDEF-like domain DK42_RS04595 PF02595 Glycerate kinase family DK42_RS04610 PF01047 MarR family DK42_RS04615 PF02547 Queuosine biosynthesis protein DK42_RS04625 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DK42_RS04630 PF13409 Glutathione S-transferase, N-terminal domain DK42_RS04635 PF01479 S4 domain DK42_RS04635 PF00849 RNA pseudouridylate synthase DK42_RS04650 PF08439 Oligopeptidase F DK42_RS04650 PF01432 Peptidase family M3 DK42_RS04660 PF01596 O-methyltransferase DK42_RS04665 PF13145 PPIC-type PPIASE domain DK42_RS04670 PF04525 LURP-one-related DK42_RS04675 PF01411 tRNA synthetases class II (A) DK42_RS04675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK42_RS04675 PF02272 DHHA1 domain DK42_RS04685 PF01501 Glycosyl transferase family 8 DK42_RS04685 PF08437 Glycosyl transferase family 8 C-terminal DK42_RS04695 PF01381 Helix-turn-helix DK42_RS04705 PF09515 Thiamine transporter protein (Thia_YuaJ) DK42_RS04710 PF00268 Ribonucleotide reductase, small chain DK42_RS04715 PF08343 Ribonucleotide reductase N-terminal DK42_RS04715 PF00317 Ribonucleotide reductase, all-alpha domain DK42_RS04715 PF02867 Ribonucleotide reductase, barrel domain DK42_RS04720 PF00462 Glutaredoxin DK42_RS04725 PF00381 PTS HPr component phosphorylation site DK42_RS04730 PF05524 PEP-utilising enzyme, N-terminal DK42_RS04730 PF00391 PEP-utilising enzyme, mobile domain DK42_RS04730 PF02896 PEP-utilising enzyme, TIM barrel domain DK42_RS04735 PF00171 Aldehyde dehydrogenase family DK42_RS04740 PF01522 Polysaccharide deacetylase DK42_RS04740 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DK42_RS04750 PF00270 DEAD/DEAH box helicase DK42_RS04750 PF00271 Helicase conserved C-terminal domain DK42_RS04755 PF00485 Phosphoribulokinase / Uridine kinase family DK42_RS04760 PF01609 Transposase DDE domain DK42_RS04760 PF13808 DDE_Tnp_1-associated DK42_RS04765 PF13185 GAF domain DK42_RS04770 PF12169 DNA polymerase III subunits gamma and tau domain III DK42_RS04780 PF08279 HTH domain DK42_RS04780 PF03099 Biotin/lipoate A/B protein ligase family DK42_RS04780 PF02237 Biotin protein ligase C terminal domain DK42_RS04785 PF00438 S-adenosylmethionine synthetase, N-terminal domain DK42_RS04785 PF02773 S-adenosylmethionine synthetase, C-terminal domain DK42_RS04785 PF02772 S-adenosylmethionine synthetase, central domain DK42_RS04810 PF09819 ABC-type cobalt transport system, permease component DK42_RS04815 PF00005 ABC transporter DK42_RS04825 PF03070 TENA/THI-4/PQQC family DK42_RS04830 PF08543 Phosphomethylpyrimidine kinase DK42_RS04835 PF02110 Hydroxyethylthiazole kinase family DK42_RS04840 PF02581 Thiamine monophosphate synthase DK42_RS04845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK42_RS04855 PF00392 Bacterial regulatory proteins, gntR family DK42_RS04855 PF07085 DRTGG domain DK42_RS04855 PF03061 Thioesterase superfamily DK42_RS04855 PF00571 CBS domain DK42_RS04860 PF00557 Metallopeptidase family M24 DK42_RS04870 PF04138 GtrA-like protein DK42_RS04875 PF06177 QueT transporter DK42_RS04880 PF12826 Helix-hairpin-helix motif DK42_RS04880 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DK42_RS04880 PF03120 NAD-dependent DNA ligase OB-fold domain DK42_RS04880 PF01653 NAD-dependent DNA ligase adenylation domain DK42_RS04880 PF00533 BRCA1 C Terminus (BRCT) domain DK42_RS04885 PF00781 Diacylglycerol kinase catalytic domain DK42_RS04890 PF00128 Alpha amylase, catalytic domain DK42_RS04890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK42_RS04890 PF17999 Pullulanase N1-terminal domain DK42_RS04895 PF00128 Alpha amylase, catalytic domain DK42_RS04895 PF02806 Alpha amylase, C-terminal all-beta domain DK42_RS04895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK42_RS04900 PF00132 Bacterial transferase hexapeptide (six repeats) DK42_RS04900 PF00483 Nucleotidyl transferase DK42_RS04905 PF00483 Nucleotidyl transferase DK42_RS04910 PF00534 Glycosyl transferases group 1 DK42_RS04910 PF08323 Starch synthase catalytic domain DK42_RS04915 PF00137 ATP synthase subunit C DK42_RS04920 PF00119 ATP synthase A chain DK42_RS04925 PF00430 ATP synthase B/B' CF(0) DK42_RS04930 PF00213 ATP synthase delta (OSCP) subunit DK42_RS04935 PF00306 ATP synthase alpha/beta chain, C terminal domain DK42_RS04935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK42_RS04935 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK42_RS04940 PF00231 ATP synthase DK42_RS04945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK42_RS04945 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK42_RS04950 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DK42_RS04950 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DK42_RS04960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK42_RS04970 PF01223 DNA/RNA non-specific endonuclease DK42_RS04975 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DK42_RS04975 PF01409 tRNA synthetases class II core domain (F) DK42_RS04980 PF13673 Acetyltransferase (GNAT) domain DK42_RS04985 PF03147 Ferredoxin-fold anticodon binding domain DK42_RS04985 PF01588 Putative tRNA binding domain DK42_RS04985 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DK42_RS04985 PF03484 tRNA synthetase B5 domain DK42_RS04985 PF03483 B3/4 domain DK42_RS04990 PF04228 Putative neutral zinc metallopeptidase DK42_RS04995 PF12705 PD-(D/E)XK nuclease superfamily DK42_RS05000 PF00580 UvrD/REP helicase N-terminal domain DK42_RS05000 PF13361 UvrD-like helicase C-terminal domain DK42_RS05000 PF12705 PD-(D/E)XK nuclease superfamily DK42_RS05010 PF10396 GTP-binding protein TrmE N-terminus DK42_RS05010 PF01926 50S ribosome-binding GTPase DK42_RS05010 PF12631 MnmE helical domain DK42_RS05015 PF12848 ABC transporter DK42_RS05015 PF16326 ABC transporter C-terminal domain DK42_RS05015 PF00005 ABC transporter DK42_RS05020 PF00676 Dehydrogenase E1 component DK42_RS05025 PF02780 Transketolase, C-terminal domain DK42_RS05025 PF00364 Biotin-requiring enzyme DK42_RS05025 PF02779 Transketolase, pyrimidine binding domain DK42_RS05030 PF00364 Biotin-requiring enzyme DK42_RS05030 PF02817 e3 binding domain DK42_RS05030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DK42_RS05035 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS05035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK42_RS05040 PF03099 Biotin/lipoate A/B protein ligase family DK42_RS05040 PF10437 Bacterial lipoate protein ligase C-terminus DK42_RS05050 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS05055 PF07685 CobB/CobQ-like glutamine amidotransferase domain DK42_RS05060 PF08353 Domain of unknown function (DUF1727) DK42_RS05060 PF08245 Mur ligase middle domain DK42_RS05065 PF02457 DisA bacterial checkpoint controller nucleotide-binding DK42_RS05075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK42_RS05075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK42_RS05075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK42_RS05075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK42_RS05090 PF04055 Radical SAM superfamily DK42_RS05090 PF06969 HemN C-terminal domain DK42_RS05100 PF13344 Haloacid dehalogenase-like hydrolase DK42_RS05110 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 DK42_RS05110 PF13395 HNH endonuclease DK42_RS05110 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 DK42_RS05110 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 DK42_RS05115 PF01867 CRISPR associated protein Cas1 DK42_RS05120 PF09827 CRISPR associated protein Cas2 DK42_RS05125 PF09711 CRISPR-associated protein (Cas_Csn2) DK42_RS05130 PF00334 Nucleoside diphosphate kinase DK42_RS05135 PF00679 Elongation factor G C-terminus DK42_RS05135 PF00009 Elongation factor Tu GTP binding domain DK42_RS05135 PF06421 GTP-binding protein LepA C-terminus DK42_RS05135 PF03144 Elongation factor Tu domain 2 DK42_RS05145 PF01966 HD domain DK42_RS05150 PF13673 Acetyltransferase (GNAT) domain DK42_RS05155 PF01641 SelR domain DK42_RS05160 PF00689 Cation transporting ATPase, C-terminus DK42_RS05160 PF00690 Cation transporter/ATPase, N-terminus DK42_RS05170 PF00132 Bacterial transferase hexapeptide (six repeats) DK42_RS05195 PF00005 ABC transporter DK42_RS05200 PF00392 Bacterial regulatory proteins, gntR family DK42_RS05205 PF02811 PHP domain DK42_RS05205 PF14579 Helix-hairpin-helix motif DK42_RS05205 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK42_RS05205 PF01336 OB-fold nucleic acid binding domain DK42_RS05205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK42_RS05210 PF00365 Phosphofructokinase DK42_RS05215 PF00224 Pyruvate kinase, barrel domain DK42_RS05215 PF02887 Pyruvate kinase, alpha/beta domain DK42_RS05220 PF10502 Signal peptidase, peptidase S26 DK42_RS05225 PF01380 SIS domain DK42_RS05230 PF08274 PhnA Zinc-Ribbon DK42_RS05230 PF03831 PhnA domain DK42_RS05235 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS05240 PF00005 ABC transporter DK42_RS05250 PF01649 Ribosomal protein S20 DK42_RS05255 PF00485 Phosphoribulokinase / Uridine kinase family DK42_RS05260 PF05175 Methyltransferase small domain DK42_RS05265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK42_RS05270 PF02608 ABC transporter substrate-binding protein PnrA-like DK42_RS05275 PF00005 ABC transporter DK42_RS05280 PF02653 Branched-chain amino acid transport system / permease component DK42_RS05285 PF02653 Branched-chain amino acid transport system / permease component DK42_RS05290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS05290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK42_RS05295 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DK42_RS05295 PF00056 lactate/malate dehydrogenase, NAD binding domain DK42_RS05300 PF03989 DNA gyrase C-terminal domain, beta-propeller DK42_RS05300 PF00521 DNA gyrase/topoisomerase IV, subunit A DK42_RS05305 PF04203 Sortase domain DK42_RS05310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK42_RS05315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS05325 PF00999 Sodium/hydrogen exchanger family DK42_RS05335 PF02540 NAD synthase DK42_RS05335 PF00958 GMP synthase C terminal domain DK42_RS05335 PF00117 Glutamine amidotransferase class-I DK42_RS05340 PF00392 Bacterial regulatory proteins, gntR family DK42_RS05340 PF07702 UTRA domain DK42_RS05345 PF01134 Glucose inhibited division protein A DK42_RS05355 PF03180 NLPA lipoprotein DK42_RS05365 PF03572 Peptidase family S41 DK42_RS05370 PF00005 ABC transporter DK42_RS05380 PF00486 Transcriptional regulatory protein, C terminal DK42_RS05380 PF00072 Response regulator receiver domain DK42_RS05385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS05390 PF00589 Phage integrase family DK42_RS05390 PF13495 Phage integrase, N-terminal SAM-like domain DK42_RS05395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK42_RS05410 PF02978 Signal peptide binding domain DK42_RS05410 PF02881 SRP54-type protein, helical bundle domain DK42_RS05410 PF00448 SRP54-type protein, GTPase domain DK42_RS05415 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DK42_RS05420 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS05420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS05425 PF00486 Transcriptional regulatory protein, C terminal DK42_RS05425 PF00072 Response regulator receiver domain DK42_RS05430 PF01433 Peptidase family M1 domain DK42_RS05430 PF11838 ERAP1-like C-terminal domain DK42_RS05435 PF01895 PhoU domain DK42_RS05440 PF00005 ABC transporter DK42_RS05445 PF00005 ABC transporter DK42_RS05450 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS05455 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS05460 PF12849 PBP superfamily domain DK42_RS05465 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DK42_RS05465 PF01189 16S rRNA methyltransferase RsmB/F DK42_RS05465 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DK42_RS05470 PF00459 Inositol monophosphatase family DK42_RS05475 PF05256 Uncharacterised protein family (UPF0223) DK42_RS05480 PF03960 ArsC family DK42_RS05485 PF01687 Riboflavin kinase DK42_RS05485 PF06574 FAD synthetase DK42_RS05490 PF01509 TruB family pseudouridylate synthase (N terminal domain) DK42_RS05490 PF16198 tRNA pseudouridylate synthase B C-terminal domain DK42_RS05520 PF00005 ABC transporter DK42_RS05525 PF01131 DNA topoisomerase DK42_RS05525 PF01396 Topoisomerase DNA binding C4 zinc finger DK42_RS05525 PF01751 Toprim domain DK42_RS05530 PF02481 DNA recombination-mediator protein A DK42_RS05530 PF18255 DNA processing protein A sterile alpha motif domain DK42_RS05535 PF01497 Periplasmic binding protein DK42_RS05540 PF00005 ABC transporter DK42_RS05545 PF01032 FecCD transport family DK42_RS05550 PF01032 FecCD transport family DK42_RS05555 PF12464 Maltose acetyltransferase DK42_RS05555 PF14602 Hexapeptide repeat of succinyl-transferase DK42_RS05560 PF01351 Ribonuclease HII DK42_RS05565 PF01926 50S ribosome-binding GTPase DK42_RS05570 PF03734 L,D-transpeptidase catalytic domain DK42_RS05575 PF02554 Carbon starvation protein CstA DK42_RS05580 PF00072 Response regulator receiver domain DK42_RS05580 PF04397 LytTr DNA-binding domain DK42_RS05585 PF13492 GAF domain DK42_RS05585 PF07694 5TMR of 5TMR-LYT DK42_RS05585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS05585 PF06580 Histidine kinase DK42_RS05660 PF12538 DNA transporter DK42_RS05660 PF01580 FtsK/SpoIIIE family DK42_RS05665 PF10140 WXG100 protein secretion system (Wss), protein YukC DK42_RS05690 PF06013 Proteins of 100 residues with WXG DK42_RS05705 PF02142 MGS-like domain DK42_RS05705 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DK42_RS05705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK42_RS05710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DK42_RS05710 PF00117 Glutamine amidotransferase class-I DK42_RS05715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK42_RS05715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK42_RS05720 PF01979 Amidohydrolase family DK42_RS05725 PF00156 Phosphoribosyl transferase domain DK42_RS05730 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK42_RS05740 PF00005 ABC transporter DK42_RS05740 PF12848 ABC transporter DK42_RS05750 PF02774 Semialdehyde dehydrogenase, dimerisation domain DK42_RS05750 PF01118 Semialdehyde dehydrogenase, NAD binding domain DK42_RS05760 PF13091 PLD-like domain DK42_RS05765 PF01268 Formate--tetrahydrofolate ligase DK42_RS05770 PF03099 Biotin/lipoate A/B protein ligase family DK42_RS05770 PF10437 Bacterial lipoate protein ligase C-terminus DK42_RS05780 PF01661 Macro domain DK42_RS05785 PF01597 Glycine cleavage H-protein DK42_RS05795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DK42_RS05800 PF03099 Biotin/lipoate A/B protein ligase family DK42_RS05810 PF02441 Flavoprotein DK42_RS05815 PF12822 ECF transporter, substrate-specific component DK42_RS05820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK42_RS05820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK42_RS05820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK42_RS05820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK42_RS05830 PF00665 Integrase core domain DK42_RS05830 PF13333 Integrase core domain DK42_RS05830 PF13276 HTH-like domain DK42_RS05840 PF00005 ABC transporter DK42_RS05840 PF00664 ABC transporter transmembrane region DK42_RS05845 PF00005 ABC transporter DK42_RS05845 PF00664 ABC transporter transmembrane region DK42_RS05860 PF00464 Serine hydroxymethyltransferase DK42_RS05870 PF05175 Methyltransferase small domain DK42_RS05875 PF00472 RF-1 domain DK42_RS05875 PF03462 PCRF domain DK42_RS05880 PF00265 Thymidine kinase DK42_RS05885 PF01361 Tautomerase enzyme DK42_RS05890 PF02424 ApbE family DK42_RS05895 PF03358 NADPH-dependent FMN reductase DK42_RS05895 PF04205 FMN-binding domain DK42_RS05895 PF00890 FAD binding domain DK42_RS05900 PF00890 FAD binding domain DK42_RS05900 PF03358 NADPH-dependent FMN reductase DK42_RS05900 PF04205 FMN-binding domain DK42_RS05910 PF00860 Permease family DK42_RS05915 PF00156 Phosphoribosyl transferase domain DK42_RS05920 PF00478 IMP dehydrogenase / GMP reductase domain DK42_RS05925 PF07690 Major Facilitator Superfamily DK42_RS05935 PF02705 K+ potassium transporter DK42_RS05940 PF00106 short chain dehydrogenase DK42_RS05945 PF01515 Phosphate acetyl/butaryl transferase DK42_RS05950 PF00849 RNA pseudouridylate synthase DK42_RS05955 PF01513 ATP-NAD kinase DK42_RS05960 PF04607 Region found in RelA / SpoT proteins DK42_RS05970 PF14572 Phosphoribosyl synthetase-associated domain DK42_RS05970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK42_RS05975 PF00266 Aminotransferase class-V DK42_RS05985 PF06971 Putative DNA-binding protein N-terminus DK42_RS05985 PF02629 CoA binding domain DK42_RS05990 PF04002 RadC-like JAB domain DK42_RS05995 PF01594 AI-2E family transporter DK42_RS06015 PF12852 Cupin DK42_RS06015 PF12833 Helix-turn-helix domain DK42_RS06020 PF00654 Voltage gated chloride channel DK42_RS06025 PF13416 Bacterial extracellular solute-binding protein DK42_RS06030 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS06035 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS06040 PF08402 TOBE domain DK42_RS06040 PF00005 ABC transporter DK42_RS06045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DK42_RS06045 PF01565 FAD binding domain DK42_RS06050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DK42_RS06055 PF02152 Dihydroneopterin aldolase DK42_RS06060 PF00809 Pterin binding enzyme DK42_RS06065 PF01227 GTP cyclohydrolase I DK42_RS06070 PF08245 Mur ligase middle domain DK42_RS06070 PF02875 Mur ligase family, glutamate ligase domain DK42_RS06075 PF00892 EamA-like transporter family DK42_RS06080 PF08544 GHMP kinases C terminal DK42_RS06080 PF00288 GHMP kinases N terminal domain DK42_RS06085 PF00742 Homoserine dehydrogenase DK42_RS06085 PF03447 Homoserine dehydrogenase, NAD binding domain DK42_RS06100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS06105 PF02028 BCCT, betaine/carnitine/choline family transporter DK42_RS06110 PF00171 Aldehyde dehydrogenase family DK42_RS06115 PF03601 Conserved hypothetical protein 698 DK42_RS06140 PF08534 Redoxin DK42_RS06160 PF03780 Asp23 family, cell envelope-related function DK42_RS06165 PF05532 CsbD-like DK42_RS06170 PF03780 Asp23 family, cell envelope-related function DK42_RS06185 PF04226 Transglycosylase associated protein DK42_RS06190 PF00580 UvrD/REP helicase N-terminal domain DK42_RS06190 PF13361 UvrD-like helicase C-terminal domain DK42_RS06205 PF00860 Permease family DK42_RS06210 PF01235 Sodium:alanine symporter family DK42_RS06215 PF16916 Dimerisation domain of Zinc Transporter DK42_RS06215 PF01545 Cation efflux family DK42_RS06220 PF03788 LrgA family DK42_RS06225 PF04172 LrgB-like family DK42_RS06260 PF00589 Phage integrase family DK42_RS06260 PF02899 Phage integrase, N-terminal SAM-like domain DK42_RS06275 PF00575 S1 RNA binding domain DK42_RS06295 PF01063 Amino-transferase class IV DK42_RS06300 PF00521 DNA gyrase/topoisomerase IV, subunit A DK42_RS06300 PF03989 DNA gyrase C-terminal domain, beta-propeller DK42_RS06305 PF00204 DNA gyrase B DK42_RS06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS06305 PF01751 Toprim domain DK42_RS06305 PF00986 DNA gyrase B subunit, carboxyl terminus DK42_RS06310 PF02660 Glycerol-3-phosphate acyltransferase DK42_RS06315 PF03167 Uracil DNA glycosylase superfamily DK42_RS06325 PF02348 Cytidylyltransferase DK42_RS06325 PF13472 GDSL-like Lipase/Acylhydrolase family DK42_RS06335 PF02350 UDP-N-acetylglucosamine 2-epimerase DK42_RS06340 PF03102 NeuB family DK42_RS06340 PF08666 SAF domain DK42_RS06345 PF01943 Polysaccharide biosynthesis protein DK42_RS06365 PF01501 Glycosyl transferase family 8 DK42_RS06365 PF00535 Glycosyl transferase family 2 DK42_RS06385 PF04101 Glycosyltransferase family 28 C-terminal domain DK42_RS06385 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase DK42_RS06390 PF04101 Glycosyltransferase family 28 C-terminal domain DK42_RS06390 PF03033 Glycosyltransferase family 28 N-terminal domain DK42_RS06395 PF02397 Bacterial sugar transferase DK42_RS06400 PF13614 AAA domain DK42_RS06405 PF02706 Chain length determinant protein DK42_RS06415 PF03816 Cell envelope-related transcriptional attenuator domain DK42_RS06420 PF03466 LysR substrate binding domain DK42_RS06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK42_RS06430 PF01048 Phosphorylase superfamily DK42_RS06435 PF00654 Voltage gated chloride channel DK42_RS06440 PF01048 Phosphorylase superfamily DK42_RS06445 PF03960 ArsC family DK42_RS06450 PF01676 Metalloenzyme superfamily DK42_RS06455 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DK42_RS06465 PF00756 Putative esterase DK42_RS06470 PF17770 Ribonuclease J C-terminal domain DK42_RS06470 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK42_RS06470 PF00753 Metallo-beta-lactamase superfamily DK42_RS06475 PF08402 TOBE domain DK42_RS06475 PF00005 ABC transporter DK42_RS06490 PF05670 NFACT protein RNA binding domain DK42_RS06495 PF03306 Alpha-acetolactate decarboxylase DK42_RS06500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DK42_RS06500 PF00205 Thiamine pyrophosphate enzyme, central domain DK42_RS06500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DK42_RS06510 PF01594 AI-2E family transporter DK42_RS06520 PF00293 NUDIX domain DK42_RS06525 PF02278 Polysaccharide lyase family 8, super-sandwich domain DK42_RS06525 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DK42_RS06525 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DK42_RS06530 PF16363 GDP-mannose 4,6 dehydratase DK42_RS06535 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DK42_RS06540 PF00483 Nucleotidyl transferase DK42_RS06545 PF01266 FAD dependent oxidoreductase DK42_RS06550 PF01784 NIF3 (NGG1p interacting factor 3) DK42_RS06555 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DK42_RS06565 PF00156 Phosphoribosyl transferase domain DK42_RS06575 PF17768 RecJ OB domain DK42_RS06575 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DK42_RS06575 PF01368 DHH family DK42_RS06575 PF02272 DHHA1 domain DK42_RS06580 PF00106 short chain dehydrogenase DK42_RS06585 PF12706 Beta-lactamase superfamily domain DK42_RS06585 PF00753 Metallo-beta-lactamase superfamily DK42_RS06595 PF01926 50S ribosome-binding GTPase DK42_RS06595 PF13167 GTP-binding GTPase N-terminal DK42_RS06595 PF16360 GTP-binding GTPase Middle Region DK42_RS06620 PF17967 Pullulanase N2 domain DK42_RS06620 PF03714 Bacterial pullanase-associated domain DK42_RS06620 PF18494 Pullulanase Ins domain DK42_RS06620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK42_RS06620 PF11852 Domain of unknown function (DUF3372) DK42_RS06630 PF03167 Uracil DNA glycosylase superfamily DK42_RS06635 PF01546 Peptidase family M20/M25/M40 DK42_RS06640 PF00881 Nitroreductase family DK42_RS06645 PF03009 Glycerophosphoryl diester phosphodiesterase family DK42_RS06650 PF08459 UvrC Helix-hairpin-helix N-terminal DK42_RS06650 PF01541 GIY-YIG catalytic domain DK42_RS06650 PF02151 UvrB/uvrC motif DK42_RS06655 PF02677 Epoxyqueuosine reductase QueH DK42_RS06660 PF01554 MatE DK42_RS06695 PF13333 Integrase core domain DK42_RS06695 PF00665 Integrase core domain DK42_RS06695 PF13276 HTH-like domain DK42_RS06705 PF13683 Integrase core domain DK42_RS06705 PF01610 Transposase DK42_RS06715 PF01297 Zinc-uptake complex component A periplasmic DK42_RS06720 PF01609 Transposase DDE domain DK42_RS06720 PF13808 DDE_Tnp_1-associated DK42_RS06725 PF02225 PA domain DK42_RS06725 PF06280 Fn3-like domain DK42_RS06725 PF00082 Subtilase family DK42_RS06745 PF14579 Helix-hairpin-helix motif DK42_RS06745 PF02811 PHP domain DK42_RS06745 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK42_RS06745 PF00929 Exonuclease DK42_RS06745 PF11490 DNA polymerase III polC-type N-terminus II DK42_RS06745 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK42_RS06755 PF13495 Phage integrase, N-terminal SAM-like domain DK42_RS06755 PF00589 Phage integrase family DK42_RS06810 PF00542 Ribosomal protein L7/L12 C-terminal domain DK42_RS06810 PF16320 Ribosomal protein L7/L12 dimerisation domain DK42_RS06815 PF00466 Ribosomal protein L10 DK42_RS06820 PF07724 AAA domain (Cdc48 subfamily) DK42_RS06820 PF10431 C-terminal, D2-small domain, of ClpB protein DK42_RS06820 PF17871 AAA lid domain DK42_RS06820 PF00004 ATPase family associated with various cellular activities (AAA) DK42_RS06825 PF02574 Homocysteine S-methyltransferase DK42_RS06850 PF01926 50S ribosome-binding GTPase DK42_RS06855 PF07724 AAA domain (Cdc48 subfamily) DK42_RS06855 PF10431 C-terminal, D2-small domain, of ClpB protein DK42_RS06855 PF06689 ClpX C4-type zinc finger DK42_RS06865 PF00186 Dihydrofolate reductase DK42_RS06870 PF00303 Thymidylate synthase DK42_RS06875 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DK42_RS06875 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DK42_RS06880 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DK42_RS06890 PF03006 Haemolysin-III related DK42_RS06895 PF00781 Diacylglycerol kinase catalytic domain DK42_RS06910 PF01070 FMN-dependent dehydrogenase DK42_RS06915 PF08544 GHMP kinases C terminal DK42_RS06915 PF00288 GHMP kinases N terminal domain DK42_RS06925 PF10509 Galactokinase galactose-binding signature DK42_RS06925 PF00288 GHMP kinases N terminal domain DK42_RS06925 PF08544 GHMP kinases C terminal DK42_RS06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS06930 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS06935 PF00486 Transcriptional regulatory protein, C terminal DK42_RS06935 PF00072 Response regulator receiver domain DK42_RS06940 PF04607 Region found in RelA / SpoT proteins DK42_RS06945 PF00005 ABC transporter DK42_RS06945 PF00664 ABC transporter transmembrane region DK42_RS06950 PF00005 ABC transporter DK42_RS06950 PF00664 ABC transporter transmembrane region DK42_RS06960 PF00149 Calcineurin-like phosphoesterase DK42_RS06960 PF02872 5'-nucleotidase, C-terminal domain DK42_RS06960 PF17936 Bacterial Ig domain DK42_RS06965 PF01327 Polypeptide deformylase DK42_RS06970 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DK42_RS06970 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DK42_RS06980 PF00664 ABC transporter transmembrane region DK42_RS06980 PF00005 ABC transporter DK42_RS06985 PF00005 ABC transporter DK42_RS06985 PF00664 ABC transporter transmembrane region DK42_RS06995 PF00005 ABC transporter DK42_RS06995 PF16326 ABC transporter C-terminal domain DK42_RS06995 PF12848 ABC transporter DK42_RS07000 PF13735 tRNA nucleotidyltransferase domain 2 putative DK42_RS07000 PF01743 Poly A polymerase head domain DK42_RS07000 PF12627 Probable RNA and SrmB- binding site of polymerase A DK42_RS07005 PF02645 Uncharacterised protein, DegV family COG1307 DK42_RS07015 PF01609 Transposase DDE domain DK42_RS07015 PF13808 DDE_Tnp_1-associated DK42_RS07030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK42_RS07030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK42_RS07035 PF00294 pfkB family carbohydrate kinase DK42_RS07040 PF00455 DeoR C terminal sensor domain DK42_RS07040 PF08220 DeoR-like helix-turn-helix domain DK42_RS07055 PF08546 Ketopantoate reductase PanE/ApbA C terminal DK42_RS07055 PF02558 Ketopantoate reductase PanE/ApbA DK42_RS07065 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS07070 PF01746 tRNA (Guanine-1)-methyltransferase DK42_RS07075 PF05239 PRC-barrel domain DK42_RS07075 PF01782 RimM N-terminal domain DK42_RS07100 PF00886 Ribosomal protein S16 DK42_RS07105 PF02687 FtsX-like permease family DK42_RS07105 PF12704 MacB-like periplasmic core domain DK42_RS07110 PF00005 ABC transporter DK42_RS07115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DK42_RS07120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK42_RS07120 PF02142 MGS-like domain DK42_RS07120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DK42_RS07125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DK42_RS07125 PF00117 Glutamine amidotransferase class-I DK42_RS07130 PF00156 Phosphoribosyl transferase domain DK42_RS07135 PF00849 RNA pseudouridylate synthase DK42_RS07135 PF01479 S4 domain DK42_RS07140 PF01252 Signal peptidase (SPase) II DK42_RS07145 PF03466 LysR substrate binding domain DK42_RS07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK42_RS07150 PF01016 Ribosomal L27 protein DK42_RS07160 PF00829 Ribosomal prokaryotic L21 protein DK42_RS07170 PF02568 Thiamine biosynthesis protein (ThiI) DK42_RS07170 PF02926 THUMP domain DK42_RS07175 PF00266 Aminotransferase class-V DK42_RS07185 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS07185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK42_RS07190 PF06133 Control of competence regulator ComK, YlbF/YmcA DK42_RS07195 PF01264 Chorismate synthase DK42_RS07200 PF01761 3-dehydroquinate synthase DK42_RS07205 PF01487 Type I 3-dehydroquinase DK42_RS07210 PF10672 S-adenosylmethionine-dependent methyltransferase DK42_RS07210 PF17785 PUA-like domain DK42_RS07215 PF00884 Sulfatase DK42_RS07220 PF00453 Ribosomal protein L20 DK42_RS07225 PF01632 Ribosomal protein L35 DK42_RS07230 PF00707 Translation initiation factor IF-3, C-terminal domain DK42_RS07230 PF05198 Translation initiation factor IF-3, N-terminal domain DK42_RS07235 PF02224 Cytidylate kinase DK42_RS07255 PF07687 Peptidase dimerisation domain DK42_RS07255 PF01546 Peptidase family M20/M25/M40 DK42_RS07260 PF01943 Polysaccharide biosynthesis protein DK42_RS07260 PF14667 Polysaccharide biosynthesis C-terminal domain DK42_RS07265 PF02875 Mur ligase family, glutamate ligase domain DK42_RS07265 PF08245 Mur ligase middle domain DK42_RS07270 PF00005 ABC transporter DK42_RS07275 PF01497 Periplasmic binding protein DK42_RS07280 PF01032 FecCD transport family DK42_RS07285 PF01032 FecCD transport family DK42_RS07295 PF02833 DHHA2 domain DK42_RS07295 PF01368 DHH family DK42_RS07300 PF04055 Radical SAM superfamily DK42_RS07305 PF00571 CBS domain DK42_RS07305 PF01595 Cyclin M transmembrane N-terminal domain DK42_RS07305 PF03471 Transporter associated domain DK42_RS07310 PF06962 Putative rRNA methylase DK42_RS07315 PF16199 Radical_SAM C-terminal domain DK42_RS07315 PF04055 Radical SAM superfamily DK42_RS07320 PF01569 PAP2 superfamily DK42_RS07325 PF12822 ECF transporter, substrate-specific component DK42_RS07360 PF08323 Starch synthase catalytic domain DK42_RS07360 PF00534 Glycosyl transferases group 1 DK42_RS07365 PF00535 Glycosyl transferase family 2 DK42_RS07370 PF01943 Polysaccharide biosynthesis protein DK42_RS07370 PF14667 Polysaccharide biosynthesis C-terminal domain DK42_RS07380 PF00535 Glycosyl transferase family 2 DK42_RS07385 PF00535 Glycosyl transferase family 2 DK42_RS07385 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DK42_RS07395 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DK42_RS07400 PF04991 LicD family DK42_RS07415 PF00535 Glycosyl transferase family 2 DK42_RS07420 PF00535 Glycosyl transferase family 2 DK42_RS07430 PF04321 RmlD substrate binding domain DK42_RS07435 PF01883 Iron-sulfur cluster assembly protein DK42_RS07440 PF04542 Sigma-70 region 2 DK42_RS07440 PF03979 Sigma-70 factor, region 1.1 DK42_RS07440 PF00140 Sigma-70 factor, region 1.2 DK42_RS07440 PF04539 Sigma-70 region 3 DK42_RS07440 PF04545 Sigma-70, region 4 DK42_RS07445 PF01807 CHC2 zinc finger DK42_RS07445 PF10410 DnaB-helicase binding domain of primase DK42_RS07445 PF08275 DNA primase catalytic core, N-terminal domain DK42_RS07450 PF01741 Large-conductance mechanosensitive channel, MscL DK42_RS07455 PF01165 Ribosomal protein S21 DK42_RS07465 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK42_RS07480 PF17773 UPF0176 acylphosphatase like domain DK42_RS07480 PF12368 Rhodanase C-terminal DK42_RS07480 PF00581 Rhodanese-like domain DK42_RS07500 PF00343 Carbohydrate phosphorylase DK42_RS07505 PF02446 4-alpha-glucanotransferase DK42_RS07510 PF00356 Bacterial regulatory proteins, lacI family DK42_RS07510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DK42_RS07520 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS07525 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS07530 PF00854 POT family DK42_RS07550 PF00534 Glycosyl transferases group 1 DK42_RS07555 PF07517 SecA DEAD-like domain DK42_RS07555 PF07516 SecA Wing and Scaffold domain DK42_RS07555 PF01043 SecA preprotein cross-linking domain DK42_RS07565 PF16929 Accessory Sec system GspB-transporter DK42_RS07570 PF16993 Accessory Sec system protein Asp1 DK42_RS07575 PF00344 SecY translocase DK42_RS07580 PF08759 Glycosyltransferase GT-D fold DK42_RS07580 PF01501 Glycosyl transferase family 8 DK42_RS07585 PF00535 Glycosyl transferase family 2 DK42_RS07585 PF01501 Glycosyl transferase family 8 DK42_RS07590 PF01501 Glycosyl transferase family 8 DK42_RS07590 PF08759 Glycosyltransferase GT-D fold DK42_RS07595 PF01501 Glycosyl transferase family 8 DK42_RS07595 PF00535 Glycosyl transferase family 2 DK42_RS07600 PF01501 Glycosyl transferase family 8 DK42_RS07600 PF08759 Glycosyltransferase GT-D fold DK42_RS07610 PF17210 SdrD B-like domain DK42_RS07610 PF04650 YSIRK type signal peptide DK42_RS07610 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DK42_RS07610 PF17961 Bacterial Ig domain DK42_RS07610 PF00746 LPXTG cell wall anchor motif DK42_RS07620 PF12344 Ultra-violet resistance protein B DK42_RS07620 PF17757 UvrB interaction domain DK42_RS07620 PF00271 Helicase conserved C-terminal domain DK42_RS07620 PF04851 Type III restriction enzyme, res subunit DK42_RS07620 PF02151 UvrB/uvrC motif DK42_RS07630 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS07635 PF00005 ABC transporter DK42_RS07650 PF01018 GTP1/OBG DK42_RS07650 PF09269 Domain of unknown function (DUF1967) DK42_RS07650 PF01926 50S ribosome-binding GTPase DK42_RS07660 PF02073 Thermophilic metalloprotease (M29) DK42_RS07670 PF01425 Amidase DK42_RS07675 PF00849 RNA pseudouridylate synthase DK42_RS07675 PF01479 S4 domain DK42_RS07680 PF00248 Aldo/keto reductase family DK42_RS07685 PF00881 Nitroreductase family DK42_RS07690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK42_RS07695 PF00535 Glycosyl transferase family 2 DK42_RS07700 PF00324 Amino acid permease DK42_RS07705 PF01668 SmpB protein DK42_RS07710 PF17876 Cold shock domain DK42_RS07710 PF08206 Ribonuclease B OB domain DK42_RS07710 PF00773 RNB domain DK42_RS07710 PF00575 S1 RNA binding domain DK42_RS07720 PF00083 Sugar (and other) transporter DK42_RS07720 PF07690 Major Facilitator Superfamily DK42_RS07730 PF00005 ABC transporter DK42_RS07730 PF13732 Domain of unknown function (DUF4162) DK42_RS07735 PF01121 Dephospho-CoA kinase DK42_RS07740 PF06827 Zinc finger found in FPG and IleRS DK42_RS07740 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DK42_RS07740 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DK42_RS07745 PF01381 Helix-turn-helix DK42_RS07780 PF01926 50S ribosome-binding GTPase DK42_RS07780 PF07650 KH domain DK42_RS07785 PF01219 Prokaryotic diacylglycerol kinase DK42_RS07790 PF02130 Uncharacterized protein family UPF0054 DK42_RS07800 PF00293 NUDIX domain DK42_RS07800 PF13344 Haloacid dehalogenase-like hydrolase DK42_RS07810 PF02562 PhoH-like protein DK42_RS07815 PF06100 MCRA family DK42_RS07820 PF06855 YozE SAM-like fold DK42_RS07825 PF01625 Peptide methionine sulfoxide reductase DK42_RS07835 PF01765 Ribosome recycling factor DK42_RS07840 PF00696 Amino acid kinase family DK42_RS07845 PF00005 ABC transporter DK42_RS07850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK42_RS07850 PF00005 ABC transporter DK42_RS07855 PF12911 N-terminal TM domain of oligopeptide transport permease C DK42_RS07855 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS07865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK42_RS07870 PF00687 Ribosomal protein L1p/L10e family DK42_RS07875 PF00298 Ribosomal protein L11, RNA binding domain DK42_RS07875 PF03946 Ribosomal protein L11, N-terminal domain DK42_RS07885 PF07690 Major Facilitator Superfamily DK42_RS07890 PF07687 Peptidase dimerisation domain DK42_RS07890 PF01546 Peptidase family M20/M25/M40 DK42_RS07895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK42_RS07895 PF03466 LysR substrate binding domain DK42_RS07905 PF00425 chorismate binding enzyme DK42_RS07905 PF04715 Anthranilate synthase component I, N terminal region DK42_RS07910 PF17854 FtsK alpha domain DK42_RS07910 PF09397 Ftsk gamma domain DK42_RS07910 PF01580 FtsK/SpoIIIE family DK42_RS07915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK42_RS07920 PF00950 ABC 3 transport family DK42_RS07925 PF00005 ABC transporter DK42_RS07930 PF01297 Zinc-uptake complex component A periplasmic DK42_RS07940 PF01048 Phosphorylase superfamily DK42_RS07950 PF00293 NUDIX domain DK42_RS07955 PF12804 MobA-like NTP transferase domain DK42_RS07955 PF00132 Bacterial transferase hexapeptide (six repeats) DK42_RS07955 PF14602 Hexapeptide repeat of succinyl-transferase DK42_RS07975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK42_RS07975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK42_RS08015 PF00535 Glycosyl transferase family 2 DK42_RS08040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS08045 PF05525 Branched-chain amino acid transport protein DK42_RS08050 PF09334 tRNA synthetases class I (M) DK42_RS08050 PF01588 Putative tRNA binding domain DK42_RS08055 PF03848 Tellurite resistance protein TehB DK42_RS08055 PF09313 Domain of unknown function (DUF1971) DK42_RS08065 PF02378 Phosphotransferase system, EIIC DK42_RS08075 PF03372 Endonuclease/Exonuclease/phosphatase family DK42_RS08085 PF03960 ArsC family DK42_RS08090 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DK42_RS08090 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DK42_RS08095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK42_RS08095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK42_RS08105 PF00266 Aminotransferase class-V DK42_RS08110 PF03932 CutC family DK42_RS08115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DK42_RS08120 PF06156 Initiation control protein YabA DK42_RS08125 PF09115 DNA polymerase III, delta subunit, C terminal DK42_RS08130 PF02223 Thymidylate kinase DK42_RS08135 PF00571 CBS domain DK42_RS08140 PF00005 ABC transporter DK42_RS08145 PF12399 Branched-chain amino acid ATP-binding cassette transporter DK42_RS08145 PF00005 ABC transporter DK42_RS08150 PF02653 Branched-chain amino acid transport system / permease component DK42_RS08150 PF11862 Domain of unknown function (DUF3382) DK42_RS08155 PF02653 Branched-chain amino acid transport system / permease component DK42_RS08160 PF13458 Periplasmic binding protein DK42_RS08165 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DK42_RS08170 PF00574 Clp protease DK42_RS08180 PF00155 Aminotransferase class I and II DK42_RS08185 PF00588 SpoU rRNA Methylase family DK42_RS08190 PF13520 Amino acid permease DK42_RS08195 PF02254 TrkA-N domain DK42_RS08195 PF02080 TrkA-C domain DK42_RS08200 PF02386 Cation transport protein DK42_RS08205 PF01809 Putative membrane protein insertion efficiency factor DK42_RS08210 PF00849 RNA pseudouridylate synthase DK42_RS08210 PF01479 S4 domain DK42_RS08215 PF04079 Segregation and condensation complex subunit ScpB DK42_RS08220 PF02616 Segregation and condensation protein ScpA DK42_RS08225 PF00589 Phage integrase family DK42_RS08240 PF01725 Ham1 family DK42_RS08245 PF01177 Asp/Glu/Hydantoin racemase DK42_RS08250 PF03672 Uncharacterised protein family (UPF0154) DK42_RS08260 PF08279 HTH domain DK42_RS08260 PF02829 3H domain DK42_RS08265 PF01027 Inhibitor of apoptosis-promoting Bax1 DK42_RS08275 PF00588 SpoU rRNA Methylase family DK42_RS08275 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK42_RS08280 PF00708 Acylphosphatase DK42_RS08285 PF02096 60Kd inner membrane protein DK42_RS08290 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS08295 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK42_RS08300 PF01425 Amidase DK42_RS08305 PF01272 Transcription elongation factor, GreA/GreB, C-term DK42_RS08305 PF03449 Transcription elongation factor, N-terminal DK42_RS08310 PF02618 YceG-like family DK42_RS08320 PF02875 Mur ligase family, glutamate ligase domain DK42_RS08320 PF01225 Mur ligase family, catalytic domain DK42_RS08320 PF08245 Mur ligase middle domain DK42_RS08330 PF04434 SWIM zinc finger DK42_RS08330 PF00176 SNF2 family N-terminal domain DK42_RS08330 PF00271 Helicase conserved C-terminal domain DK42_RS08335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DK42_RS08335 PF01926 50S ribosome-binding GTPase DK42_RS08340 PF07319 Primosomal protein DnaI N-terminus DK42_RS08340 PF01695 IstB-like ATP binding protein DK42_RS08350 PF03477 ATP cone domain DK42_RS08355 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS08355 PF18719 ArlS sensor domain DK42_RS08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS08360 PF00486 Transcriptional regulatory protein, C terminal DK42_RS08360 PF00072 Response regulator receiver domain DK42_RS08370 PF01435 Peptidase family M48 DK42_RS08375 PF04011 LemA family DK42_RS08380 PF02527 rRNA small subunit methyltransferase G DK42_RS08385 PF02386 Cation transport protein DK42_RS08390 PF02080 TrkA-C domain DK42_RS08390 PF02254 TrkA-N domain DK42_RS08400 PF00005 ABC transporter DK42_RS08400 PF12558 ATP-binding cassette cobalt transporter DK42_RS08405 PF07155 ECF-type riboflavin transporter, S component DK42_RS08410 PF00375 Sodium:dicarboxylate symporter family DK42_RS08415 PF05525 Branched-chain amino acid transport protein DK42_RS08420 PF13823 Alcohol dehydrogenase GroES-associated DK42_RS08420 PF00107 Zinc-binding dehydrogenase DK42_RS08420 PF08240 Alcohol dehydrogenase GroES-like domain DK42_RS08430 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS08435 PF09383 NIL domain DK42_RS08435 PF00005 ABC transporter DK42_RS08440 PF07687 Peptidase dimerisation domain DK42_RS08440 PF01546 Peptidase family M20/M25/M40 DK42_RS08445 PF03180 NLPA lipoprotein DK42_RS08450 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK42_RS08455 PF07722 Peptidase C26 DK42_RS08460 PF01709 Transcriptional regulator DK42_RS08465 PF02733 Dak1 domain DK42_RS08470 PF00440 Bacterial regulatory proteins, tetR family DK42_RS08470 PF14278 Transcriptional regulator C-terminal region DK42_RS08475 PF02733 Dak1 domain DK42_RS08480 PF02734 DAK2 domain DK42_RS08485 PF03610 PTS system fructose IIA component DK42_RS08490 PF00230 Major intrinsic protein DK42_RS08500 PF07739 TipAS antibiotic-recognition domain DK42_RS08500 PF13411 MerR HTH family regulatory protein DK42_RS08505 PF05636 HIGH Nucleotidyl Transferase DK42_RS08515 PF13649 Methyltransferase domain DK42_RS08530 PF01966 HD domain DK42_RS08535 PF01467 Cytidylyltransferase-like DK42_RS08540 PF01985 CRS1 / YhbY (CRM) domain DK42_RS08545 PF01926 50S ribosome-binding GTPase DK42_RS08560 PF02934 GatB/GatE catalytic domain DK42_RS08560 PF02637 GatB domain DK42_RS08565 PF01425 Amidase DK42_RS08570 PF02686 Glu-tRNAGln amidotransferase C subunit DK42_RS08575 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DK42_RS08575 PF02896 PEP-utilising enzyme, TIM barrel domain DK42_RS08575 PF00391 PEP-utilising enzyme, mobile domain DK42_RS08580 PF03618 Kinase/pyrophosphorylase DK42_RS08585 PF00571 CBS domain DK42_RS08585 PF08279 HTH domain DK42_RS08590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DK42_RS08590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DK42_RS08590 PF00378 Enoyl-CoA hydratase/isomerase DK42_RS08595 PF00857 Isochorismatase family DK42_RS08600 PF06018 CodY GAF-like domain DK42_RS08600 PF08222 CodY helix-turn-helix domain DK42_RS08605 PF00155 Aminotransferase class I and II DK42_RS08610 PF00582 Universal stress protein family DK42_RS08620 PF00710 Asparaginase, N-terminal DK42_RS08620 PF17763 Glutaminase/Asparaginase C-terminal domain DK42_RS08625 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DK42_RS08625 PF08501 Shikimate dehydrogenase substrate binding domain DK42_RS08630 PF00248 Aldo/keto reductase family DK42_RS08635 PF00270 DEAD/DEAH box helicase DK42_RS08635 PF00271 Helicase conserved C-terminal domain DK42_RS08635 PF17191 RecG wedge domain DK42_RS08640 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK42_RS08640 PF05257 CHAP domain DK42_RS08645 PF00842 Alanine racemase, C-terminal domain DK42_RS08645 PF01168 Alanine racemase, N-terminal domain DK42_RS08650 PF01648 4'-phosphopantetheinyl transferase superfamily DK42_RS08655 PF00793 DAHP synthetase I family DK42_RS08660 PF07517 SecA DEAD-like domain DK42_RS08660 PF02810 SEC-C motif DK42_RS08660 PF07516 SecA Wing and Scaffold domain DK42_RS08660 PF01043 SecA preprotein cross-linking domain DK42_RS08665 PF01609 Transposase DDE domain DK42_RS08665 PF13808 DDE_Tnp_1-associated DK42_RS08670 PF01238 Phosphomannose isomerase type I DK42_RS08675 PF00480 ROK family DK42_RS08680 PF00367 phosphotransferase system, EIIB DK42_RS08680 PF02378 Phosphotransferase system, EIIC DK42_RS08680 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK42_RS08685 PF00251 Glycosyl hydrolases family 32 N-terminal domain DK42_RS08685 PF08244 Glycosyl hydrolases family 32 C terminal DK42_RS08690 PF00356 Bacterial regulatory proteins, lacI family DK42_RS08695 PF01029 NusB family DK42_RS08700 PF03780 Asp23 family, cell envelope-related function DK42_RS08705 PF09285 Elongation factor P, C-terminal DK42_RS08705 PF08207 Elongation factor P (EF-P) KOW-like domain DK42_RS08705 PF01132 Elongation factor P (EF-P) OB domain DK42_RS08710 PF00005 ABC transporter DK42_RS08710 PF00664 ABC transporter transmembrane region DK42_RS08715 PF00664 ABC transporter transmembrane region DK42_RS08715 PF00005 ABC transporter DK42_RS08740 PF00501 AMP-binding enzyme DK42_RS08740 PF13193 AMP-binding enzyme C-terminal domain DK42_RS08745 PF00501 AMP-binding enzyme DK42_RS08745 PF13193 AMP-binding enzyme C-terminal domain DK42_RS08755 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK42_RS08760 PF00557 Metallopeptidase family M24 DK42_RS08760 PF01321 Creatinase/Prolidase N-terminal domain DK42_RS08770 PF07690 Major Facilitator Superfamily DK42_RS08775 PF17755 UvrA DNA-binding domain DK42_RS08775 PF17760 UvrA interaction domain DK42_RS08775 PF00005 ABC transporter DK42_RS08790 PF01084 Ribosomal protein S18 DK42_RS08795 PF00436 Single-strand binding protein family DK42_RS08800 PF01250 Ribosomal protein S6 DK42_RS08805 PF14815 NUDIX domain DK42_RS08805 PF00730 HhH-GPD superfamily base excision DNA repair protein DK42_RS08810 PF01381 Helix-turn-helix DK42_RS08815 PF00085 Thioredoxin DK42_RS08825 PF01713 Smr domain DK42_RS08825 PF00488 MutS domain V DK42_RS08840 PF01351 Ribonuclease HII DK42_RS08840 PF11858 Domain of unknown function (DUF3378) DK42_RS08845 PF10502 Signal peptidase, peptidase S26 DK42_RS08850 PF14490 Helix-hairpin-helix containing domain DK42_RS08850 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DK42_RS08850 PF13538 UvrD-like helicase C-terminal domain DK42_RS08865 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS08870 PF11798 IMS family HHH motif DK42_RS08870 PF11799 impB/mucB/samB family C-terminal domain DK42_RS08870 PF00817 impB/mucB/samB family DK42_RS08875 PF01228 Glycine radical DK42_RS08875 PF02901 Pyruvate formate lyase-like DK42_RS08880 PF01243 Pyridoxamine 5'-phosphate oxidase DK42_RS08885 PF00144 Beta-lactamase DK42_RS08900 PF00230 Major intrinsic protein DK42_RS08910 PF07690 Major Facilitator Superfamily DK42_RS08915 PF13545 Crp-like helix-turn-helix domain DK42_RS08920 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DK42_RS08920 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DK42_RS08920 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal DK42_RS08930 PF00348 Polyprenyl synthetase DK42_RS08935 PF00664 ABC transporter transmembrane region DK42_RS08935 PF00005 ABC transporter DK42_RS08940 PF00664 ABC transporter transmembrane region DK42_RS08940 PF00005 ABC transporter DK42_RS08945 PF02322 Cytochrome bd terminal oxidase subunit II DK42_RS08950 PF01654 Cytochrome bd terminal oxidase subunit I DK42_RS08955 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS08970 PF02575 YbaB/EbfC DNA-binding family DK42_RS08980 PF13411 MerR HTH family regulatory protein DK42_RS08980 PF07739 TipAS antibiotic-recognition domain DK42_RS08990 PF08279 HTH domain DK42_RS08990 PF04394 Protein of unknown function, DUF536 DK42_RS09005 PF00253 Ribosomal protein S14p/S29e DK42_RS09015 PF00814 Glycoprotease family DK42_RS09020 PF00583 Acetyltransferase (GNAT) family DK42_RS09025 PF00814 Glycoprotease family DK42_RS09030 PF07288 Protein of unknown function (DUF1447) DK42_RS09035 PF00753 Metallo-beta-lactamase superfamily DK42_RS09035 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK42_RS09035 PF17770 Ribonuclease J C-terminal domain DK42_RS09040 PF01476 LysM domain DK42_RS09040 PF05257 CHAP domain DK42_RS09045 PF00120 Glutamine synthetase, catalytic domain DK42_RS09045 PF03951 Glutamine synthetase, beta-Grasp domain DK42_RS09050 PF13411 MerR HTH family regulatory protein DK42_RS09060 PF00162 Phosphoglycerate kinase DK42_RS09065 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DK42_RS09070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DK42_RS09070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DK42_RS09075 PF03764 Elongation factor G, domain IV DK42_RS09075 PF14492 Elongation Factor G, domain II DK42_RS09075 PF00009 Elongation factor Tu GTP binding domain DK42_RS09075 PF00679 Elongation factor G C-terminus DK42_RS09075 PF03144 Elongation factor Tu domain 2 DK42_RS09080 PF00177 Ribosomal protein S7p/S5e DK42_RS09085 PF00164 Ribosomal protein S12/S23 DK42_RS09090 PF09182 Bacterial purine repressor, N-terminal DK42_RS09090 PF00156 Phosphoribosyl transferase domain DK42_RS09095 PF01966 HD domain DK42_RS09095 PF01336 OB-fold nucleic acid binding domain DK42_RS09100 PF02646 RmuC family DK42_RS09110 PF00834 Ribulose-phosphate 3 epimerase family DK42_RS09115 PF16745 RsgA N-terminal domain DK42_RS09115 PF03193 RsgA GTPase DK42_RS09120 PF08241 Methyltransferase domain DK42_RS09125 PF00398 Ribosomal RNA adenine dimethylase DK42_RS09135 PF13331 Domain of unknown function (DUF4093) DK42_RS09140 PF01026 TatD related DNase DK42_RS09165 PF04914 DltD protein DK42_RS09170 PF00550 Phosphopantetheine attachment site DK42_RS09175 PF03062 MBOAT, membrane-bound O-acyltransferase family DK42_RS09180 PF13193 AMP-binding enzyme C-terminal domain DK42_RS09180 PF00501 AMP-binding enzyme DK42_RS09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS09190 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS09195 PF00486 Transcriptional regulatory protein, C terminal DK42_RS09195 PF00072 Response regulator receiver domain DK42_RS09200 PF00468 Ribosomal protein L34 DK42_RS09205 PF07670 Nucleoside recognition DK42_RS09210 PF00589 Phage integrase family DK42_RS09210 PF02920 DNA binding domain of tn916 integrase DK42_RS09215 PF09035 Excisionase from transposon Tn916 DK42_RS09240 PF03764 Elongation factor G, domain IV DK42_RS09240 PF00009 Elongation factor Tu GTP binding domain DK42_RS09240 PF00679 Elongation factor G C-terminus DK42_RS09240 PF14492 Elongation Factor G, domain II DK42_RS09250 PF00877 NlpC/P60 family DK42_RS09280 PF02486 Replication initiation factor DK42_RS09280 PF18106 Rolling Circle replication initiation protein N-terminal domain DK42_RS09300 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS09305 PF00571 CBS domain DK42_RS09305 PF00005 ABC transporter DK42_RS09310 PF09364 XFP N-terminal domain DK42_RS09310 PF09363 XFP C-terminal domain DK42_RS09310 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DK42_RS09330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DK42_RS09330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DK42_RS09340 PF03611 PTS system sugar-specific permease component DK42_RS09345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK42_RS09345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK42_RS09355 PF00356 Bacterial regulatory proteins, lacI family DK42_RS09360 PF00923 Transaldolase/Fructose-6-phosphate aldolase DK42_RS09365 PF00596 Class II Aldolase and Adducin N-terminal domain DK42_RS09370 PF01261 Xylose isomerase-like TIM barrel DK42_RS09375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK42_RS09380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK42_RS09385 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK42_RS09390 PF03611 PTS system sugar-specific permease component DK42_RS09410 PF00709 Adenylosuccinate synthetase DK42_RS09425 PF04262 Glutamate-cysteine ligase DK42_RS09425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK42_RS09425 PF18419 ATP-grasp-like domain DK42_RS09440 PF01430 Hsp33 protein DK42_RS09445 PF01207 Dihydrouridine synthase (Dus) DK42_RS09450 PF01712 Deoxynucleoside kinase DK42_RS09460 PF10431 C-terminal, D2-small domain, of ClpB protein DK42_RS09460 PF02861 Clp amino terminal domain, pathogenicity island component DK42_RS09460 PF07724 AAA domain (Cdc48 subfamily) DK42_RS09460 PF00004 ATPase family associated with various cellular activities (AAA) DK42_RS09460 PF17871 AAA lid domain DK42_RS09465 PF17727 CtsR C-terminal dimerization domain DK42_RS09465 PF05848 CtsR N-terminal HTH domain DK42_RS09475 PF00889 Elongation factor TS DK42_RS09480 PF00318 Ribosomal protein S2 DK42_RS09485 PF00578 AhpC/TSA family DK42_RS09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK42_RS09490 PF13192 Thioredoxin domain DK42_RS09515 PF12728 Helix-turn-helix domain DK42_RS09515 PF02661 Fic/DOC family DK42_RS09570 PF18106 Rolling Circle replication initiation protein N-terminal domain DK42_RS09570 PF02486 Replication initiation factor DK42_RS09580 PF02899 Phage integrase, N-terminal SAM-like domain DK42_RS09580 PF00589 Phage integrase family DK42_RS09590 PF00471 Ribosomal protein L33 DK42_RS09595 PF01783 Ribosomal L32p protein family DK42_RS09600 PF13393 Histidyl-tRNA synthetase DK42_RS09600 PF03129 Anticodon binding domain DK42_RS09605 PF00152 tRNA synthetases class II (D, K and N) DK42_RS09605 PF02938 GAD domain DK42_RS09605 PF01336 OB-fold nucleic acid binding domain DK42_RS09610 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK42_RS09610 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK42_RS09615 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK42_RS09615 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK42_RS09625 PF00750 tRNA synthetases class I (R) DK42_RS09625 PF03485 Arginyl tRNA synthetase N terminal domain DK42_RS09625 PF05746 DALR anticodon binding domain DK42_RS09630 PF02863 Arginine repressor, C-terminal domain DK42_RS09630 PF01316 Arginine repressor, DNA binding domain DK42_RS09635 PF05190 MutS family domain IV DK42_RS09635 PF05192 MutS domain III DK42_RS09635 PF05188 MutS domain II DK42_RS09635 PF01624 MutS domain I DK42_RS09635 PF00488 MutS domain V DK42_RS09640 PF00313 'Cold-shock' DNA-binding domain DK42_RS09645 PF01119 DNA mismatch repair protein, C-terminal domain DK42_RS09645 PF08676 MutL C terminal dimerisation domain DK42_RS09655 PF07499 RuvA, C-terminal domain DK42_RS09655 PF01330 RuvA N terminal domain DK42_RS09660 PF03352 Methyladenine glycosylase DK42_RS09665 PF18146 Damage-inducible protein CinA KH domain DK42_RS09665 PF00994 Probable molybdopterin binding domain DK42_RS09665 PF02464 Competence-damaged protein DK42_RS09670 PF00154 recA bacterial DNA recombination protein DK42_RS09675 PF03960 ArsC family DK42_RS09680 PF06135 IreB regulatory phosphoprotein DK42_RS09685 PF03652 Holliday junction resolvase DK42_RS09690 PF06949 Protein of unknown function (DUF1292) DK42_RS09705 PF03477 ATP cone domain DK42_RS09705 PF13597 Anaerobic ribonucleoside-triphosphate reductase DK42_RS09715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK42_RS09730 PF03883 Peroxide stress protein YaaA DK42_RS09735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK42_RS09750 PF02653 Branched-chain amino acid transport system / permease component DK42_RS09755 PF00005 ABC transporter DK42_RS09760 PF00166 Chaperonin 10 Kd subunit DK42_RS09765 PF00118 TCP-1/cpn60 chaperonin family DK42_RS09780 PF01048 Phosphorylase superfamily DK42_RS09785 PF07670 Nucleoside recognition DK42_RS09785 PF07662 Na+ dependent nucleoside transporter C-terminus DK42_RS09785 PF01773 Na+ dependent nucleoside transporter N-terminus DK42_RS09790 PF01791 DeoC/LacD family aldolase DK42_RS09795 PF01676 Metalloenzyme superfamily DK42_RS09805 PF00849 RNA pseudouridylate synthase DK42_RS09805 PF01479 S4 domain DK42_RS09810 PF00912 Transglycosylase DK42_RS09810 PF00905 Penicillin binding protein transpeptidase domain DK42_RS09820 PF17573 GA-like domain DK42_RS09820 PF01378 B domain DK42_RS09820 PF00746 LPXTG cell wall anchor motif DK42_RS09825 PF02357 Transcription termination factor nusG DK42_RS09825 PF00467 KOW motif DK42_RS09830 PF01734 Patatin-like phospholipase DK42_RS09835 PF07690 Major Facilitator Superfamily DK42_RS09840 PF13808 DDE_Tnp_1-associated DK42_RS09840 PF01609 Transposase DDE domain DK42_RS09850 PF09334 tRNA synthetases class I (M) DK42_RS09850 PF00133 tRNA synthetases class I (I, L, M and V) DK42_RS09850 PF13603 Leucyl-tRNA synthetase, Domain 2 DK42_RS09850 PF08264 Anticodon-binding domain of tRNA DK42_RS09860 PF00672 HAMP domain DK42_RS09860 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS09865 PF00486 Transcriptional regulatory protein, C terminal DK42_RS09865 PF00072 Response regulator receiver domain DK42_RS09875 PF03591 AzlC protein DK42_RS09885 PF08267 Cobalamin-independent synthase, N-terminal domain DK42_RS09885 PF01717 Cobalamin-independent synthase, Catalytic domain DK42_RS09890 PF02219 Methylenetetrahydrofolate reductase DK42_RS09890 PF02574 Homocysteine S-methyltransferase DK42_RS09900 PF13276 HTH-like domain DK42_RS09900 PF13333 Integrase core domain DK42_RS09900 PF00665 Integrase core domain DK42_RS09910 PF00465 Iron-containing alcohol dehydrogenase DK42_RS09920 PF07373 CAMP factor (Cfa) DK42_RS09925 PF00581 Rhodanese-like domain DK42_RS09935 PF03641 Possible lysine decarboxylase DK42_RS09940 PF03819 MazG nucleotide pyrophosphohydrolase domain DK42_RS09955 PF01381 Helix-turn-helix DK42_RS09965 PF13732 Domain of unknown function (DUF4162) DK42_RS09965 PF00005 ABC transporter DK42_RS09995 PF04439 Streptomycin adenylyltransferase DK42_RS10035 PF16193 AAA C-terminal domain DK42_RS10035 PF12002 MgsA AAA+ ATPase C terminal DK42_RS10035 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK42_RS10040 PF00583 Acetyltransferase (GNAT) family DK42_RS10060 PF00293 NUDIX domain DK42_RS10075 PF04452 RNA methyltransferase DK42_RS10085 PF12849 PBP superfamily domain DK42_RS10090 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS10095 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS10100 PF00005 ABC transporter DK42_RS10105 PF01895 PhoU domain DK42_RS10110 PF00072 Response regulator receiver domain DK42_RS10110 PF00486 Transcriptional regulatory protein, C terminal DK42_RS10115 PF16736 Single Cache-like DK42_RS10115 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS10115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS10115 PF00989 PAS fold DK42_RS10120 PF02378 Phosphotransferase system, EIIC DK42_RS10120 PF00367 phosphotransferase system, EIIB DK42_RS10120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK42_RS10125 PF03372 Endonuclease/Exonuclease/phosphatase family DK42_RS10130 PF04397 LytTr DNA-binding domain DK42_RS10130 PF00072 Response regulator receiver domain DK42_RS10140 PF00005 ABC transporter DK42_RS10140 PF13732 Domain of unknown function (DUF4162) DK42_RS10150 PF01757 Acyltransferase family DK42_RS10150 PF01168 Alanine racemase, N-terminal domain DK42_RS10150 PF00842 Alanine racemase, C-terminal domain DK42_RS10160 PF03830 PTS system sorbose subfamily IIB component DK42_RS10165 PF03609 PTS system sorbose-specific iic component DK42_RS10170 PF03613 PTS system mannose/fructose/sorbose family IID component DK42_RS10175 PF06580 Histidine kinase DK42_RS10175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS10180 PF00072 Response regulator receiver domain DK42_RS10180 PF12833 Helix-turn-helix domain DK42_RS10200 PF05343 M42 glutamyl aminopeptidase DK42_RS10205 PF07972 NrdI Flavodoxin like DK42_RS10210 PF02872 5'-nucleotidase, C-terminal domain DK42_RS10210 PF00149 Calcineurin-like phosphoesterase DK42_RS10215 PF02824 TGS domain DK42_RS10215 PF13291 ACT domain DK42_RS10215 PF04607 Region found in RelA / SpoT proteins DK42_RS10220 PF02580 D-Tyr-tRNA(Tyr) deacylase DK42_RS10235 PF00455 DeoR C terminal sensor domain DK42_RS10235 PF08220 DeoR-like helix-turn-helix domain DK42_RS10255 PF13088 BNR repeat-like domain DK42_RS10255 PF02973 Sialidase, N-terminal domain DK42_RS10255 PF04650 YSIRK type signal peptide DK42_RS10260 PF02502 Ribose/Galactose Isomerase DK42_RS10265 PF02502 Ribose/Galactose Isomerase DK42_RS10270 PF00294 pfkB family carbohydrate kinase DK42_RS10275 PF01791 DeoC/LacD family aldolase DK42_RS10280 PF01263 Aldose 1-epimerase DK42_RS10285 PF13556 PucR C-terminal helix-turn-helix domain DK42_RS10290 PF00005 ABC transporter DK42_RS10290 PF03459 TOBE domain DK42_RS10290 PF17912 MalK OB fold domain DK42_RS10295 PF00128 Alpha amylase, catalytic domain DK42_RS10300 PF16363 GDP-mannose 4,6 dehydratase DK42_RS10305 PF00072 Response regulator receiver domain DK42_RS10310 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DK42_RS10310 PF17203 Single cache domain 3 DK42_RS10310 PF00989 PAS fold DK42_RS10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS10315 PF03390 2-hydroxycarboxylate transporter family DK42_RS10320 PF03949 Malic enzyme, NAD binding domain DK42_RS10320 PF00390 Malic enzyme, N-terminal domain DK42_RS10330 PF02699 Preprotein translocase subunit DK42_RS10335 PF01255 Putative undecaprenyl diphosphate synthase DK42_RS10345 PF13180 PDZ domain DK42_RS10345 PF02163 Peptidase family M50 DK42_RS10350 PF03129 Anticodon binding domain DK42_RS10350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK42_RS10350 PF04073 Aminoacyl-tRNA editing domain DK42_RS10355 PF01476 LysM domain DK42_RS10355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK42_RS10360 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK42_RS10360 PF14480 DNA polymerase III polC-type N-terminus I DK42_RS10360 PF11490 DNA polymerase III polC-type N-terminus II DK42_RS10360 PF00929 Exonuclease DK42_RS10360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK42_RS10360 PF14579 Helix-hairpin-helix motif DK42_RS10360 PF02811 PHP domain DK42_RS10405 PF03830 PTS system sorbose subfamily IIB component DK42_RS10405 PF03610 PTS system fructose IIA component DK42_RS10410 PF07470 Glycosyl Hydrolase Family 88 DK42_RS10415 PF03830 PTS system sorbose subfamily IIB component DK42_RS10420 PF03609 PTS system sorbose-specific iic component DK42_RS10425 PF03613 PTS system mannose/fructose/sorbose family IID component DK42_RS10435 PF00356 Bacterial regulatory proteins, lacI family DK42_RS10440 PF01327 Polypeptide deformylase DK42_RS10455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK42_RS10455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK42_RS10460 PF01431 Peptidase family M13 DK42_RS10460 PF05649 Peptidase family M13 DK42_RS10465 PF02016 LD-carboxypeptidase N-terminal domain DK42_RS10465 PF17676 LD-carboxypeptidase C-terminal domain DK42_RS10480 PF00589 Phage integrase family DK42_RS10480 PF02899 Phage integrase, N-terminal SAM-like domain DK42_RS10490 PF18106 Rolling Circle replication initiation protein N-terminal domain DK42_RS10490 PF02486 Replication initiation factor DK42_RS10520 PF02661 Fic/DOC family DK42_RS10520 PF12728 Helix-turn-helix domain DK42_RS10535 PF01022 Bacterial regulatory protein, arsR family DK42_RS10545 PF13333 Integrase core domain DK42_RS10545 PF00665 Integrase core domain DK42_RS10545 PF13276 HTH-like domain DK42_RS10585 PF02899 Phage integrase, N-terminal SAM-like domain DK42_RS10585 PF00589 Phage integrase family DK42_RS10595 PF00486 Transcriptional regulatory protein, C terminal DK42_RS10595 PF00072 Response regulator receiver domain DK42_RS10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS10600 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS10605 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS10610 PF03606 C4-dicarboxylate anaerobic carrier DK42_RS10615 PF00696 Amino acid kinase family DK42_RS10620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK42_RS10620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK42_RS10625 PF00989 PAS fold DK42_RS10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK42_RS10625 PF00512 His Kinase A (phospho-acceptor) domain DK42_RS10630 PF08664 YcbB domain DK42_RS10630 PF00072 Response regulator receiver domain DK42_RS10635 PF00005 ABC transporter DK42_RS10635 PF00571 CBS domain DK42_RS10640 PF00528 Binding-protein-dependent transport system inner membrane component DK42_RS10650 PF09924 Uncharacterised conserved protein (DUF2156) DK42_RS10650 PF03706 Lysylphosphatidylglycerol synthase TM region DK42_RS10655 PF00561 alpha/beta hydrolase fold DK42_RS10660 PF06993 Protein of unknown function (DUF1304) DK42_RS10665 PF01061 ABC-2 type transporter DK42_RS10780 PF00589 Phage integrase family DK42_RS10780 PF14659 Phage integrase, N-terminal SAM-like domain DK42_RS10785 PF00163 Ribosomal protein S4/S9 N-terminal domain DK42_RS10785 PF01479 S4 domain DK42_RS10795 PF03796 DnaB-like helicase C terminal domain DK42_RS10795 PF00772 DnaB-like helicase N terminal domain DK42_RS10800 PF03948 Ribosomal protein L9, C-terminal domain DK42_RS10800 PF01281 Ribosomal protein L9, N-terminal domain DK42_RS10805 PF01368 DHH family DK42_RS10805 PF02272 DHHA1 domain DK42_RS10810 PF01134 Glucose inhibited division protein A DK42_RS10810 PF13932 GidA associated domain DK42_RS10815 PF01914 MarC family integral membrane protein DK42_RS10825 PF03315 Serine dehydratase beta chain DK42_RS10825 PF01842 ACT domain DK42_RS10830 PF03313 Serine dehydratase alpha chain DK42_RS10840 PF06737 Transglycosylase-like domain DK42_RS10845 PF05257 CHAP domain DK42_RS10845 PF01476 LysM domain DK42_RS10850 PF02361 Cobalt transport protein DK42_RS10855 PF00005 ABC transporter DK42_RS10860 PF00005 ABC transporter DK42_RS10865 PF01066 CDP-alcohol phosphatidyltransferase DK42_RS10870 PF00675 Insulinase (Peptidase family M16) DK42_RS10870 PF05193 Peptidase M16 inactive domain DK42_RS10875 PF05193 Peptidase M16 inactive domain DK42_RS10885 PF02463 RecF/RecN/SMC N terminal domain DK42_RS10895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK42_RS10900 PF06800 Sugar transport protein DK42_RS10910 PF00571 CBS domain DK42_RS10910 PF00478 IMP dehydrogenase / GMP reductase domain DK42_RS10915 PF02863 Arginine repressor, C-terminal domain DK42_RS10915 PF01316 Arginine repressor, DNA binding domain DK42_RS10920 PF13545 Crp-like helix-turn-helix domain DK42_RS10920 PF00027 Cyclic nucleotide-binding domain DK42_RS10935 PF13673 Acetyltransferase (GNAT) domain DK42_RS10940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK42_RS10940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK42_RS10945 PF13520 Amino acid permease DK42_RS10950 PF00696 Amino acid kinase family DK42_RS10955 PF00579 tRNA synthetases class I (W and Y) DK42_RS10965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK42_RS10965 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK42_RS10970 PF00005 ABC transporter DK42_RS10970 PF12848 ABC transporter DK42_RS10975 PF09586 Bacterial membrane protein YfhO DK42_RS10995 PF02590 Predicted SPOUT methyltransferase DK42_RS11000 PF13180 PDZ domain DK42_RS11005 PF17762 HTH domain found in ParB protein DK42_RS11005 PF02195 ParB-like nuclease domain