locus-tag class description DK41_RS00005 PF00308 Bacterial dnaA protein DK41_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DK41_RS00010 PF02767 DNA polymerase III beta subunit, central domain DK41_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DK41_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DK41_RS00025 PF01381 Helix-turn-helix DK41_RS00035 PF01926 50S ribosome-binding GTPase DK41_RS00035 PF06071 Protein of unknown function (DUF933) DK41_RS00040 PF01195 Peptidyl-tRNA hydrolase DK41_RS00045 PF17757 UvrB interaction domain DK41_RS00045 PF03461 TRCF domain DK41_RS00045 PF00271 Helicase conserved C-terminal domain DK41_RS00045 PF02559 CarD-like/TRCF domain DK41_RS00045 PF00270 DEAD/DEAH box helicase DK41_RS00050 PF01479 S4 domain DK41_RS00070 PF01171 PP-loop family DK41_RS00075 PF00156 Phosphoribosyl transferase domain DK41_RS00080 PF01434 Peptidase family M41 DK41_RS00080 PF06480 FtsH Extracellular DK41_RS00080 PF17862 AAA+ lid domain DK41_RS00080 PF00004 ATPase family associated with various cellular activities (AAA) DK41_RS00260 PF14572 Phosphoribosyl synthetase-associated domain DK41_RS00260 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK41_RS00265 PF00155 Aminotransferase class I and II DK41_RS00270 PF11967 Recombination protein O N terminal DK41_RS00270 PF02565 Recombination protein O C terminal DK41_RS00285 PF02504 Fatty acid synthesis protein DK41_RS00290 PF00550 Phosphopantetheine attachment site DK41_RS00295 PF01259 SAICAR synthetase DK41_RS00300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DK41_RS00300 PF02769 AIR synthase related protein, C-terminal domain DK41_RS00300 PF00586 AIR synthase related protein, N-terminal domain DK41_RS00310 PF13537 Glutamine amidotransferase domain DK41_RS00310 PF00156 Phosphoribosyl transferase domain DK41_RS00315 PF00586 AIR synthase related protein, N-terminal domain DK41_RS00315 PF02769 AIR synthase related protein, C-terminal domain DK41_RS00320 PF00551 Formyl transferase DK41_RS00330 PF02142 MGS-like domain DK41_RS00330 PF01808 AICARFT/IMPCHase bienzyme DK41_RS00335 PF01551 Peptidase family M23 DK41_RS00335 PF01476 LysM domain DK41_RS00345 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DK41_RS00355 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS00360 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS00375 PF00701 Dihydrodipicolinate synthetase family DK41_RS00380 PF00480 ROK family DK41_RS00385 PF05448 Acetyl xylan esterase (AXE1) DK41_RS00395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK41_RS00395 PF02844 Phosphoribosylglycinamide synthetase, N domain DK41_RS00395 PF02843 Phosphoribosylglycinamide synthetase, C domain DK41_RS00400 PF00731 AIR carboxylase DK41_RS00405 PF02222 ATP-grasp domain DK41_RS00405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DK41_RS00430 PF10397 Adenylosuccinate lyase C-terminus DK41_RS00430 PF00206 Lyase DK41_RS00440 PF17864 RuvB AAA lid domain DK41_RS00440 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK41_RS00440 PF05491 RuvB C-terminal winged helix domain DK41_RS00445 PF01451 Low molecular weight phosphotyrosine protein phosphatase DK41_RS00455 PF01757 Acyltransferase family DK41_RS00460 PF00465 Iron-containing alcohol dehydrogenase DK41_RS00460 PF00171 Aldehyde dehydrogenase family DK41_RS00465 PF00107 Zinc-binding dehydrogenase DK41_RS00465 PF08240 Alcohol dehydrogenase GroES-like domain DK41_RS00470 PF14821 Threonine synthase N terminus DK41_RS00470 PF00291 Pyridoxal-phosphate dependent enzyme DK41_RS00475 PF01554 MatE DK41_RS00480 PF00338 Ribosomal protein S10p/S20e DK41_RS00485 PF00297 Ribosomal protein L3 DK41_RS00490 PF00573 Ribosomal protein L4/L1 family DK41_RS00495 PF00276 Ribosomal protein L23 DK41_RS00500 PF00181 Ribosomal Proteins L2, RNA binding domain DK41_RS00500 PF03947 Ribosomal Proteins L2, C-terminal domain DK41_RS00505 PF00203 Ribosomal protein S19 DK41_RS00510 PF00237 Ribosomal protein L22p/L17e DK41_RS00515 PF00189 Ribosomal protein S3, C-terminal domain DK41_RS00515 PF07650 KH domain DK41_RS00520 PF00252 Ribosomal protein L16p/L10e DK41_RS00525 PF00831 Ribosomal L29 protein DK41_RS00530 PF00366 Ribosomal protein S17 DK41_RS00535 PF00238 Ribosomal protein L14p/L23e DK41_RS00540 PF00467 KOW motif DK41_RS00540 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DK41_RS00545 PF00281 Ribosomal protein L5 DK41_RS00545 PF00673 ribosomal L5P family C-terminus DK41_RS00550 PF00253 Ribosomal protein S14p/S29e DK41_RS00555 PF00410 Ribosomal protein S8 DK41_RS00560 PF00347 Ribosomal protein L6 DK41_RS00565 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DK41_RS00570 PF03719 Ribosomal protein S5, C-terminal domain DK41_RS00570 PF00333 Ribosomal protein S5, N-terminal domain DK41_RS00575 PF00327 Ribosomal protein L30p/L7e DK41_RS00580 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DK41_RS00585 PF00344 SecY translocase DK41_RS00595 PF01176 Translation initiation factor 1A / IF-1 DK41_RS00600 PF00416 Ribosomal protein S13/S18 DK41_RS00605 PF00411 Ribosomal protein S11 DK41_RS00610 PF01000 RNA polymerase Rpb3/RpoA insert domain DK41_RS00610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DK41_RS00610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DK41_RS00615 PF01196 Ribosomal protein L17 DK41_RS00730 PF11208 Protein of unknown function (DUF2992) DK41_RS00735 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS00750 PF02557 D-alanyl-D-alanine carboxypeptidase DK41_RS00755 PF13457 GW (Gly-Tryp) dipeptide domain DK41_RS00755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK41_RS00760 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DK41_RS00760 PF01628 HrcA protein C terminal domain DK41_RS00765 PF01025 GrpE DK41_RS00770 PF00012 Hsp70 protein DK41_RS00775 PF01556 DnaJ C terminal domain DK41_RS00775 PF00226 DnaJ domain DK41_RS00775 PF00684 DnaJ central domain DK41_RS00780 PF00392 Bacterial regulatory proteins, gntR family DK41_RS00780 PF00155 Aminotransferase class I and II DK41_RS00785 PF01416 tRNA pseudouridine synthase DK41_RS00790 PF08543 Phosphomethylpyrimidine kinase DK41_RS00795 PF07155 ECF-type riboflavin transporter, S component DK41_RS00800 PF04260 Protein of unknown function (DUF436) DK41_RS00805 PF00924 Mechanosensitive ion channel DK41_RS00810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DK41_RS00810 PF05698 Bacterial trigger factor protein (TF) C-terminus DK41_RS00810 PF05697 Bacterial trigger factor protein (TF) DK41_RS00815 PF05066 HB1, ASXL, restriction endonuclease HTH domain DK41_RS00820 PF00117 Glutamine amidotransferase class-I DK41_RS00820 PF06418 CTP synthase N-terminus DK41_RS00835 PF00692 dUTPase DK41_RS00840 PF18073 Rubredoxin metal binding domain DK41_RS00845 PF00484 Carbonic anhydrase DK41_RS00850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK41_RS00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS00855 PF00749 tRNA synthetases class I (E and Q), catalytic domain DK41_RS00860 PF13407 Periplasmic binding protein domain DK41_RS00865 PF02653 Branched-chain amino acid transport system / permease component DK41_RS00870 PF00005 ABC transporter DK41_RS00875 PF05025 RbsD / FucU transport protein family DK41_RS00880 PF00294 pfkB family carbohydrate kinase DK41_RS00885 PF00356 Bacterial regulatory proteins, lacI family DK41_RS00890 PF02687 FtsX-like permease family DK41_RS00895 PF00005 ABC transporter DK41_RS00900 PF00486 Transcriptional regulatory protein, C terminal DK41_RS00900 PF00072 Response regulator receiver domain DK41_RS00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS00905 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS00910 PF00764 Arginosuccinate synthase DK41_RS00915 PF14698 Argininosuccinate lyase C-terminal DK41_RS00915 PF00206 Lyase DK41_RS00920 PF01116 Fructose-bisphosphate aldolase class-II DK41_RS00925 PF00056 lactate/malate dehydrogenase, NAD binding domain DK41_RS00925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DK41_RS00930 PF00830 Ribosomal L28 family DK41_RS00935 PF03780 Asp23 family, cell envelope-related function DK41_RS00940 PF13684 Dihydroxyacetone kinase family DK41_RS00940 PF02734 DAK2 domain DK41_RS00965 PF00005 ABC transporter DK41_RS00970 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS00980 PF02673 Bacitracin resistance protein BacA DK41_RS00985 PF05389 Negative regulator of genetic competence (MecA) DK41_RS00990 PF00953 Glycosyl transferase family 4 DK41_RS00995 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS01005 PF00005 ABC transporter DK41_RS01010 PF01458 Uncharacterized protein family (UPF0051) DK41_RS01015 PF00266 Aminotransferase class-V DK41_RS01020 PF01592 NifU-like N terminal domain DK41_RS01025 PF01458 Uncharacterized protein family (UPF0051) DK41_RS01030 PF00768 D-alanyl-D-alanine carboxypeptidase DK41_RS01030 PF07943 Penicillin-binding protein 5, C-terminal domain DK41_RS01035 PF07943 Penicillin-binding protein 5, C-terminal domain DK41_RS01035 PF00768 D-alanyl-D-alanine carboxypeptidase DK41_RS01040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK41_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01050 PF12911 N-terminal TM domain of oligopeptide transport permease C DK41_RS01055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK41_RS01055 PF00005 ABC transporter DK41_RS01060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK41_RS01060 PF00005 ABC transporter DK41_RS01090 PF08544 GHMP kinases C terminal DK41_RS01090 PF00288 GHMP kinases N terminal domain DK41_RS01095 PF01047 MarR family DK41_RS01100 PF00005 ABC transporter DK41_RS01105 PF00950 ABC 3 transport family DK41_RS01115 PF01479 S4 domain DK41_RS01115 PF00579 tRNA synthetases class I (W and Y) DK41_RS01120 PF00905 Penicillin binding protein transpeptidase domain DK41_RS01120 PF00912 Transglycosylase DK41_RS01125 PF04565 RNA polymerase Rpb2, domain 3 DK41_RS01125 PF10385 RNA polymerase beta subunit external 1 domain DK41_RS01125 PF04560 RNA polymerase Rpb2, domain 7 DK41_RS01125 PF04561 RNA polymerase Rpb2, domain 2 DK41_RS01125 PF00562 RNA polymerase Rpb2, domain 6 DK41_RS01125 PF04563 RNA polymerase beta subunit DK41_RS01130 PF05000 RNA polymerase Rpb1, domain 4 DK41_RS01130 PF04997 RNA polymerase Rpb1, domain 1 DK41_RS01130 PF00623 RNA polymerase Rpb1, domain 2 DK41_RS01130 PF04983 RNA polymerase Rpb1, domain 3 DK41_RS01130 PF04998 RNA polymerase Rpb1, domain 5 DK41_RS01140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS01150 PF00437 Type II/IV secretion system protein DK41_RS01155 PF00482 Type II secretion system (T2SS), protein F DK41_RS01175 PF00871 Acetokinase family DK41_RS01190 PF14748 Pyrroline-5-carboxylate reductase dimerisation DK41_RS01190 PF03807 NADP oxidoreductase coenzyme F420-dependent DK41_RS01195 PF05343 M42 glutamyl aminopeptidase DK41_RS01210 PF00085 Thioredoxin DK41_RS01215 PF01588 Putative tRNA binding domain DK41_RS01215 PF14794 Domain of unknown function (DUF4479) DK41_RS01225 PF00436 Single-strand binding protein family DK41_RS01230 PF13419 Haloacid dehalogenase-like hydrolase DK41_RS01235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS01235 PF06580 Histidine kinase DK41_RS01235 PF07694 5TMR of 5TMR-LYT DK41_RS01240 PF04397 LytTr DNA-binding domain DK41_RS01240 PF00072 Response regulator receiver domain DK41_RS01245 PF03788 LrgA family DK41_RS01250 PF04172 LrgB-like family DK41_RS01255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK41_RS01260 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01265 PF12911 N-terminal TM domain of oligopeptide transport permease C DK41_RS01265 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01270 PF00005 ABC transporter DK41_RS01270 PF12558 ATP-binding cassette cobalt transporter DK41_RS01275 PF00005 ABC transporter DK41_RS01280 PF02378 Phosphotransferase system, EIIC DK41_RS01280 PF00367 phosphotransferase system, EIIB DK41_RS01285 PF00128 Alpha amylase, catalytic domain DK41_RS01285 PF16657 Maltogenic Amylase, C-terminal domain DK41_RS01290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK41_RS01295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK41_RS01300 PF03611 PTS system sugar-specific permease component DK41_RS01305 PF00456 Transketolase, thiamine diphosphate binding domain DK41_RS01310 PF02779 Transketolase, pyrimidine binding domain DK41_RS01310 PF02780 Transketolase, C-terminal domain DK41_RS01310 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DK41_RS01315 PF00970 Oxidoreductase FAD-binding domain DK41_RS01315 PF00111 2Fe-2S iron-sulfur cluster binding domain DK41_RS01315 PF00175 Oxidoreductase NAD-binding domain DK41_RS01320 PF00312 Ribosomal protein S15 DK41_RS01325 PF00013 KH domain DK41_RS01325 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DK41_RS01325 PF00575 S1 RNA binding domain DK41_RS01325 PF03725 3' exoribonuclease family, domain 2 DK41_RS01325 PF01138 3' exoribonuclease family, domain 1 DK41_RS01335 PF00132 Bacterial transferase hexapeptide (six repeats) DK41_RS01335 PF06426 Serine acetyltransferase, N-terminal DK41_RS01345 PF01406 tRNA synthetases class I (C) catalytic domain DK41_RS01345 PF09190 DALR domain DK41_RS01350 PF00636 Ribonuclease III domain DK41_RS01360 PF00588 SpoU rRNA Methylase family DK41_RS01360 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK41_RS01370 PF02645 Uncharacterised protein, DegV family COG1307 DK41_RS01375 PF01381 Helix-turn-helix DK41_RS01380 PF00572 Ribosomal protein L13 DK41_RS01385 PF00380 Ribosomal protein S9/S16 DK41_RS01390 PF00589 Phage integrase family DK41_RS01390 PF02899 Phage integrase, N-terminal SAM-like domain DK41_RS01425 PF02486 Replication initiation factor DK41_RS01435 PF01076 Plasmid recombination enzyme DK41_RS01455 PF06013 Proteins of 100 residues with WXG DK41_RS01495 PF01381 Helix-turn-helix DK41_RS01500 PF07690 Major Facilitator Superfamily DK41_RS01505 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DK41_RS01515 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01520 PF00571 CBS domain DK41_RS01520 PF00005 ABC transporter DK41_RS01610 PF13302 Acetyltransferase (GNAT) domain DK41_RS01610 PF13673 Acetyltransferase (GNAT) domain DK41_RS01610 PF00117 Glutamine amidotransferase class-I DK41_RS01610 PF00958 GMP synthase C terminal domain DK41_RS01610 PF03352 Methyladenine glycosylase DK41_RS01625 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DK41_RS01635 PF00440 Bacterial regulatory proteins, tetR family DK41_RS01645 PF00005 ABC transporter DK41_RS01655 PF03551 Transcriptional regulator PadR-like family DK41_RS01665 PF01979 Amidohydrolase family DK41_RS01670 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DK41_RS01675 PF02091 Glycyl-tRNA synthetase alpha subunit DK41_RS01680 PF02525 Flavodoxin-like fold DK41_RS01685 PF02092 Glycyl-tRNA synthetase beta subunit DK41_RS01685 PF05746 DALR anticodon binding domain DK41_RS01690 PF05979 Bacterial protein of unknown function (DUF896) DK41_RS01700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DK41_RS01700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DK41_RS01705 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DK41_RS01705 PF01266 FAD dependent oxidoreductase DK41_RS01710 PF00230 Major intrinsic protein DK41_RS01715 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS01715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK41_RS01725 PF02779 Transketolase, pyrimidine binding domain DK41_RS01725 PF02780 Transketolase, C-terminal domain DK41_RS01725 PF00456 Transketolase, thiamine diphosphate binding domain DK41_RS01735 PF00005 ABC transporter DK41_RS01745 PF00367 phosphotransferase system, EIIB DK41_RS01745 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK41_RS01745 PF02378 Phosphotransferase system, EIIC DK41_RS01750 PF00696 Amino acid kinase family DK41_RS01755 PF00171 Aldehyde dehydrogenase family DK41_RS01760 PF01795 MraW methylase family DK41_RS01770 PF03717 Penicillin-binding Protein dimerisation domain DK41_RS01770 PF03793 PASTA domain DK41_RS01770 PF00905 Penicillin binding protein transpeptidase domain DK41_RS01775 PF00953 Glycosyl transferase family 4 DK41_RS01775 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DK41_RS01780 PF00271 Helicase conserved C-terminal domain DK41_RS01780 PF00270 DEAD/DEAH box helicase DK41_RS01785 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK41_RS01790 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS01795 PF00005 ABC transporter DK41_RS01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS01810 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DK41_RS01810 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DK41_RS01810 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DK41_RS01815 PF02540 NAD synthase DK41_RS01825 PF03051 Peptidase C1-like family DK41_RS01830 PF00905 Penicillin binding protein transpeptidase domain DK41_RS01830 PF00912 Transglycosylase DK41_RS01835 PF03838 Recombination protein U DK41_RS01840 PF06908 YspA SLOG family DK41_RS01845 PF05103 DivIVA protein DK41_RS01850 PF02926 THUMP domain DK41_RS01850 PF01170 Putative RNA methylase family UPF0020 DK41_RS01855 PF18041 MapZ extracellular domain 1 DK41_RS01855 PF18708 MapZ extracellular C-terminal domain 2 DK41_RS01860 PF02664 S-Ribosylhomocysteinase (LuxS) DK41_RS01865 PF01966 HD domain DK41_RS01865 PF00013 KH domain DK41_RS01865 PF12072 Domain of unknown function (DUF3552) DK41_RS01870 PF00005 ABC transporter DK41_RS01885 PF00196 Bacterial regulatory proteins, luxR family DK41_RS01885 PF00072 Response regulator receiver domain DK41_RS01890 PF06736 Protein of unknown function (DUF1211) DK41_RS01895 PF00625 Guanylate kinase DK41_RS01900 PF01192 RNA polymerase Rpb6 DK41_RS01905 PF18074 Primosomal protein N C-terminal domain DK41_RS01905 PF04851 Type III restriction enzyme, res subunit DK41_RS01905 PF17764 3′ DNA-binding domain (3′BD) DK41_RS01905 PF00271 Helicase conserved C-terminal domain DK41_RS01905 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DK41_RS01910 PF00551 Formyl transferase DK41_RS01910 PF02911 Formyl transferase, C-terminal domain DK41_RS01915 PF01189 16S rRNA methyltransferase RsmB/F DK41_RS01915 PF01029 NusB family DK41_RS01925 PF00069 Protein kinase domain DK41_RS01925 PF03793 PASTA domain DK41_RS01935 PF07730 Histidine kinase DK41_RS01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS01935 PF00672 HAMP domain DK41_RS01940 PF00196 Bacterial regulatory proteins, luxR family DK41_RS01940 PF00072 Response regulator receiver domain DK41_RS01945 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK41_RS01950 PF00575 S1 RNA binding domain DK41_RS01955 PF04055 Radical SAM superfamily DK41_RS01960 PF08220 DeoR-like helix-turn-helix domain DK41_RS01960 PF00455 DeoR C terminal sensor domain DK41_RS01965 PF13936 Helix-turn-helix domain DK41_RS01965 PF04198 Putative sugar-binding domain DK41_RS01970 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DK41_RS01980 PF02378 Phosphotransferase system, EIIC DK41_RS01985 PF02901 Pyruvate formate lyase-like DK41_RS01985 PF01228 Glycine radical DK41_RS01990 PF00923 Transaldolase/Fructose-6-phosphate aldolase DK41_RS01995 PF00465 Iron-containing alcohol dehydrogenase DK41_RS02000 PF00291 Pyridoxal-phosphate dependent enzyme DK41_RS02005 PF01205 Uncharacterized protein family UPF0029 DK41_RS02005 PF09186 Domain of unknown function (DUF1949) DK41_RS02010 PF04851 Type III restriction enzyme, res subunit DK41_RS02010 PF00271 Helicase conserved C-terminal domain DK41_RS02020 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DK41_RS02020 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DK41_RS02050 PF00696 Amino acid kinase family DK41_RS02050 PF13840 ACT domain DK41_RS02055 PF13419 Haloacid dehalogenase-like hydrolase DK41_RS02060 PF00378 Enoyl-CoA hydratase/isomerase DK41_RS02070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DK41_RS02070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DK41_RS02075 PF00550 Phosphopantetheine attachment site DK41_RS02080 PF03060 Nitronate monooxygenase DK41_RS02085 PF00698 Acyl transferase domain DK41_RS02095 PF02801 Beta-ketoacyl synthase, C-terminal domain DK41_RS02095 PF00109 Beta-ketoacyl synthase, N-terminal domain DK41_RS02100 PF00364 Biotin-requiring enzyme DK41_RS02105 PF07977 FabA-like domain DK41_RS02110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK41_RS02110 PF00289 Biotin carboxylase, N-terminal domain DK41_RS02110 PF02785 Biotin carboxylase C-terminal domain DK41_RS02115 PF01039 Carboxyl transferase domain DK41_RS02115 PF17848 Acetyl-coA carboxylase zinc finger domain DK41_RS02120 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DK41_RS02135 PF02403 Seryl-tRNA synthetase N-terminal domain DK41_RS02135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK41_RS02155 PF03613 PTS system mannose/fructose/sorbose family IID component DK41_RS02160 PF03609 PTS system sorbose-specific iic component DK41_RS02165 PF03610 PTS system fructose IIA component DK41_RS02165 PF03830 PTS system sorbose subfamily IIB component DK41_RS02185 PF00860 Permease family DK41_RS02190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DK41_RS02195 PF13302 Acetyltransferase (GNAT) domain DK41_RS02200 PF03816 Cell envelope-related transcriptional attenuator domain DK41_RS02210 PF01230 HIT domain DK41_RS02225 PF00005 ABC transporter DK41_RS02230 PF05975 Bacterial ABC transporter protein EcsB DK41_RS02240 PF02390 Putative methyltransferase DK41_RS02250 PF17384 RimP C-terminal SH3 domain DK41_RS02250 PF02576 RimP N-terminal domain DK41_RS02255 PF00575 S1 RNA binding domain DK41_RS02255 PF13184 NusA-like KH domain DK41_RS02255 PF08529 NusA N-terminal domain DK41_RS02260 PF04296 Protein of unknown function (DUF448) DK41_RS02265 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DK41_RS02270 PF11987 Translation-initiation factor 2 DK41_RS02270 PF04760 Translation initiation factor IF-2, N-terminal region DK41_RS02270 PF00009 Elongation factor Tu GTP binding domain DK41_RS02275 PF02033 Ribosome-binding factor A DK41_RS02280 PF07859 alpha/beta hydrolase fold DK41_RS02285 PF03965 Penicillinase repressor DK41_RS02290 PF00403 Heavy-metal-associated domain DK41_RS02300 PF03458 UPF0126 domain DK41_RS02310 PF01367 5'-3' exonuclease, C-terminal SAM fold DK41_RS02310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DK41_RS02310 PF00476 DNA polymerase family A DK41_RS02315 PF13380 CoA binding domain DK41_RS02320 PF01475 Ferric uptake regulator family DK41_RS02325 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS02335 PF00072 Response regulator receiver domain DK41_RS02335 PF00486 Transcriptional regulatory protein, C terminal DK41_RS02340 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS02350 PF01702 Queuine tRNA-ribosyltransferase DK41_RS02360 PF02632 BioY family DK41_RS02365 PF12706 Beta-lactamase superfamily domain DK41_RS02370 PF14437 MafB19-like deaminase DK41_RS02380 PF00342 Phosphoglucose isomerase DK41_RS02385 PF01812 5-formyltetrahydrofolate cyclo-ligase family DK41_RS02390 PF01694 Rhomboid family DK41_RS02395 PF02608 ABC transporter substrate-binding protein PnrA-like DK41_RS02405 PF00483 Nucleotidyl transferase DK41_RS02410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DK41_RS02410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DK41_RS02415 PF00825 Ribonuclease P DK41_RS02420 PF02096 60Kd inner membrane protein DK41_RS02485 PF04167 Protein of unknown function (DUF402) DK41_RS02490 PF02631 RecX family DK41_RS02495 PF01938 TRAM domain DK41_RS02495 PF05958 tRNA (Uracil-5-)-methyltransferase DK41_RS02505 PF13673 Acetyltransferase (GNAT) domain DK41_RS02515 PF00535 Glycosyl transferase family 2 DK41_RS02515 PF01501 Glycosyl transferase family 8 DK41_RS02520 PF00268 Ribonucleotide reductase, small chain DK41_RS02525 PF07972 NrdI Flavodoxin like DK41_RS02530 PF00317 Ribonucleotide reductase, all-alpha domain DK41_RS02530 PF08343 Ribonucleotide reductase N-terminal DK41_RS02530 PF02867 Ribonucleotide reductase, barrel domain DK41_RS02550 PF00665 Integrase core domain DK41_RS02550 PF13276 HTH-like domain DK41_RS02550 PF13333 Integrase core domain DK41_RS02560 PF02627 Carboxymuconolactone decarboxylase family DK41_RS02570 PF13411 MerR HTH family regulatory protein DK41_RS02580 PF00248 Aldo/keto reductase family DK41_RS02585 PF01545 Cation efflux family DK41_RS02595 PF12833 Helix-turn-helix domain DK41_RS02600 PF00746 LPXTG cell wall anchor motif DK41_RS02600 PF17480 AlphaC C-terminal DK41_RS02600 PF08829 Alpha C protein N terminal DK41_RS02600 PF17480 AlphaC C-terminal DK41_RS02600 PF00746 LPXTG cell wall anchor motif DK41_RS02600 PF04650 YSIRK type signal peptide DK41_RS02600 PF08829 Alpha C protein N terminal DK41_RS02600 PF04650 YSIRK type signal peptide DK41_RS02635 PF13302 Acetyltransferase (GNAT) domain DK41_RS02645 PF08264 Anticodon-binding domain of tRNA DK41_RS02645 PF00133 tRNA synthetases class I (I, L, M and V) DK41_RS02645 PF10458 Valyl tRNA synthetase tRNA binding arm DK41_RS02650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK41_RS02650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK41_RS02660 PF04237 YjbR DK41_RS02665 PF03590 Aspartate-ammonia ligase DK41_RS02685 PF01467 Cytidylyltransferase-like DK41_RS02690 PF05362 Lon protease (S16) C-terminal proteolytic domain DK41_RS02690 PF13180 PDZ domain DK41_RS02695 PF02872 5'-nucleotidase, C-terminal domain DK41_RS02700 PF06265 Protein of unknown function (DUF1027) DK41_RS02705 PF04055 Radical SAM superfamily DK41_RS02715 PF00664 ABC transporter transmembrane region DK41_RS02715 PF00005 ABC transporter DK41_RS02720 PF00664 ABC transporter transmembrane region DK41_RS02720 PF00005 ABC transporter DK41_RS02725 PF00117 Glutamine amidotransferase class-I DK41_RS02730 PF02632 BioY family DK41_RS02735 PF06968 Biotin and Thiamin Synthesis associated domain DK41_RS02735 PF04055 Radical SAM superfamily DK41_RS02745 PF02803 Thiolase, C-terminal domain DK41_RS02745 PF00108 Thiolase, N-terminal domain DK41_RS02755 PF00730 HhH-GPD superfamily base excision DNA repair protein DK41_RS02755 PF10576 Iron-sulfur binding domain of endonuclease III DK41_RS02755 PF00633 Helix-hairpin-helix motif DK41_RS02770 PF00480 ROK family DK41_RS02775 PF00581 Rhodanese-like domain DK41_RS02780 PF03144 Elongation factor Tu domain 2 DK41_RS02780 PF00009 Elongation factor Tu GTP binding domain DK41_RS02780 PF14492 Elongation Factor G, domain II DK41_RS02780 PF00679 Elongation factor G C-terminus DK41_RS02790 PF08245 Mur ligase middle domain DK41_RS02790 PF02875 Mur ligase family, glutamate ligase domain DK41_RS02795 PF04101 Glycosyltransferase family 28 C-terminal domain DK41_RS02795 PF03033 Glycosyltransferase family 28 N-terminal domain DK41_RS02800 PF08478 POTRA domain, FtsQ-type DK41_RS02805 PF02491 SHS2 domain inserted in FTSA DK41_RS02805 PF11983 Membrane-attachment and polymerisation-promoting switch DK41_RS02810 PF12327 FtsZ family, C-terminal domain DK41_RS02810 PF00091 Tubulin/FtsZ family, GTPase domain DK41_RS02815 PF01168 Alanine racemase, N-terminal domain DK41_RS02820 PF04472 Cell division protein SepF DK41_RS02825 PF02325 YGGT family DK41_RS02830 PF01479 S4 domain DK41_RS02830 PF17774 Putative RNA-binding domain in YlmH DK41_RS02835 PF05103 DivIVA protein DK41_RS02840 PF00133 tRNA synthetases class I (I, L, M and V) DK41_RS02840 PF08264 Anticodon-binding domain of tRNA DK41_RS02850 PF00293 NUDIX domain DK41_RS02855 PF07724 AAA domain (Cdc48 subfamily) DK41_RS02855 PF00004 ATPase family associated with various cellular activities (AAA) DK41_RS02855 PF10431 C-terminal, D2-small domain, of ClpB protein DK41_RS02855 PF17871 AAA lid domain DK41_RS02860 PF08796 Protein of unknown function (DUF1797) DK41_RS02865 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS02870 PF00005 ABC transporter DK41_RS02875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK41_RS02875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK41_RS02875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK41_RS02875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK41_RS02880 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DK41_RS02880 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DK41_RS02885 PF01256 Carbohydrate kinase DK41_RS02890 PF02601 Exonuclease VII, large subunit DK41_RS02890 PF13742 OB-fold nucleic acid binding domain DK41_RS02895 PF02609 Exonuclease VII small subunit DK41_RS02900 PF00348 Polyprenyl synthetase DK41_RS02905 PF01728 FtsJ-like methyltransferase DK41_RS02905 PF01479 S4 domain DK41_RS02910 PF01316 Arginine repressor, DNA binding domain DK41_RS02910 PF02863 Arginine repressor, C-terminal domain DK41_RS02915 PF13476 AAA domain DK41_RS02920 PF02645 Uncharacterised protein, DegV family COG1307 DK41_RS02925 PF13472 GDSL-like Lipase/Acylhydrolase family DK41_RS02935 PF00216 Bacterial DNA-binding protein DK41_RS02945 PF00665 Integrase core domain DK41_RS02945 PF13333 Integrase core domain DK41_RS02945 PF13276 HTH-like domain DK41_RS02955 PF01180 Dihydroorotate dehydrogenase DK41_RS02965 PF02388 FemAB family DK41_RS02970 PF02388 FemAB family DK41_RS02980 PF01966 HD domain DK41_RS02990 PF00689 Cation transporting ATPase, C-terminus DK41_RS02990 PF00690 Cation transporter/ATPase, N-terminus DK41_RS03000 PF06874 Firmicute fructose-1,6-bisphosphatase DK41_RS03005 PF08331 Domain of unknown function (DUF1730) DK41_RS03010 PF03462 PCRF domain DK41_RS03010 PF00472 RF-1 domain DK41_RS03015 PF00005 ABC transporter DK41_RS03020 PF18075 FtsX extracellular domain DK41_RS03020 PF02687 FtsX-like permease family DK41_RS03030 PF00753 Metallo-beta-lactamase superfamily DK41_RS03040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS03045 PF04851 Type III restriction enzyme, res subunit DK41_RS03045 PF13307 Helicase C-terminal domain DK41_RS03045 PF00929 Exonuclease DK41_RS03050 PF00155 Aminotransferase class I and II DK41_RS03055 PF00152 tRNA synthetases class II (D, K and N) DK41_RS03055 PF01336 OB-fold nucleic acid binding domain DK41_RS03065 PF01156 Inosine-uridine preferring nucleoside hydrolase DK41_RS03075 PF03668 P-loop ATPase protein family DK41_RS03080 PF01933 Uncharacterised protein family UPF0052 DK41_RS03085 PF02650 WhiA C-terminal HTH domain DK41_RS03085 PF14527 WhiA LAGLIDADG-like domain DK41_RS03085 PF10298 WhiA N-terminal LAGLIDADG-like domain DK41_RS03090 PF03577 Peptidase family C69 DK41_RS03095 PF01297 Zinc-uptake complex component A periplasmic DK41_RS03095 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DK41_RS03105 PF01197 Ribosomal protein L31 DK41_RS03110 PF01368 DHH family DK41_RS03110 PF02272 DHHA1 domain DK41_RS03115 PF00962 Adenosine/AMP deaminase DK41_RS03120 PF00258 Flavodoxin DK41_RS03125 PF00793 DAHP synthetase I family DK41_RS03125 PF01817 Chorismate mutase type II DK41_RS03130 PF00654 Voltage gated chloride channel DK41_RS03135 PF01245 Ribosomal protein L19 DK41_RS03170 PF00005 ABC transporter DK41_RS03180 PF00486 Transcriptional regulatory protein, C terminal DK41_RS03180 PF00072 Response regulator receiver domain DK41_RS03185 PF00672 HAMP domain DK41_RS03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS03185 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS03190 PF01610 Transposase DK41_RS03190 PF13683 Integrase core domain DK41_RS03195 PF05532 CsbD-like DK41_RS03210 PF01098 Cell cycle protein DK41_RS03215 PF13808 DDE_Tnp_1-associated DK41_RS03215 PF01609 Transposase DDE domain DK41_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS03225 PF01751 Toprim domain DK41_RS03225 PF00204 DNA gyrase B DK41_RS03225 PF00986 DNA gyrase B subunit, carboxyl terminus DK41_RS03230 PF06160 Septation ring formation regulator, EzrA DK41_RS03250 PF03952 Enolase, N-terminal domain DK41_RS03250 PF00113 Enolase, C-terminal TIM barrel domain DK41_RS03260 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK41_RS03265 PF01202 Shikimate kinase DK41_RS03270 PF03816 Cell envelope-related transcriptional attenuator domain DK41_RS03275 PF05958 tRNA (Uracil-5-)-methyltransferase DK41_RS03285 PF13614 AAA domain DK41_RS03290 PF02195 ParB-like nuclease domain DK41_RS03290 PF17762 HTH domain found in ParB protein DK41_RS03355 PF03432 Relaxase/Mobilisation nuclease domain DK41_RS03405 PF04203 Sortase domain DK41_RS03410 PF00877 NlpC/P60 family DK41_RS03425 PF00072 Response regulator receiver domain DK41_RS03425 PF00486 Transcriptional regulatory protein, C terminal DK41_RS03430 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS03430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS03435 PF02557 D-alanyl-D-alanine carboxypeptidase DK41_RS03440 PF04294 VanW like protein DK41_RS03445 PF01820 D-ala D-ala ligase N-terminus DK41_RS03445 PF07478 D-ala D-ala ligase C-terminus DK41_RS03450 PF02557 D-alanyl-D-alanine carboxypeptidase DK41_RS03455 PF00842 Alanine racemase, C-terminal domain DK41_RS03455 PF01168 Alanine racemase, N-terminal domain DK41_RS03455 PF01757 Acyltransferase family DK41_RS03475 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DK41_RS03480 PF05958 tRNA (Uracil-5-)-methyltransferase DK41_RS03550 PF01751 Toprim domain DK41_RS03550 PF01131 DNA topoisomerase DK41_RS03585 PF00270 DEAD/DEAH box helicase DK41_RS03585 PF08148 DSHCT (NUC185) domain DK41_RS03585 PF00271 Helicase conserved C-terminal domain DK41_RS03590 PF03432 Relaxase/Mobilisation nuclease domain DK41_RS03600 PF00440 Bacterial regulatory proteins, tetR family DK41_RS03600 PF17922 Tetracyclin repressor-like, C-terminal domain DK41_RS03605 PF04954 Siderophore-interacting protein DK41_RS03605 PF00664 ABC transporter transmembrane region DK41_RS03605 PF08021 Siderophore-interacting FAD-binding domain DK41_RS03605 PF00005 ABC transporter DK41_RS03610 PF00664 ABC transporter transmembrane region DK41_RS03610 PF00005 ABC transporter DK41_RS03625 PF00005 ABC transporter DK41_RS03630 PF01554 MatE DK41_RS03645 PF02796 Helix-turn-helix domain of resolvase DK41_RS03645 PF00239 Resolvase, N terminal domain DK41_RS03665 PF00144 Beta-lactamase DK41_RS03670 PF00005 ABC transporter DK41_RS03700 PF00550 Phosphopantetheine attachment site DK41_RS03705 PF07977 FabA-like domain DK41_RS03710 PF00005 ABC transporter DK41_RS03725 PF01571 Aminomethyltransferase folate-binding domain DK41_RS03725 PF08669 Glycine cleavage T-protein C-terminal barrel domain DK41_RS03730 PF02801 Beta-ketoacyl synthase, C-terminal domain DK41_RS03730 PF00109 Beta-ketoacyl synthase, N-terminal domain DK41_RS03760 PF00005 ABC transporter DK41_RS03770 PF01223 DNA/RNA non-specific endonuclease DK41_RS03775 PF09335 SNARE associated Golgi protein DK41_RS03780 PF00005 ABC transporter DK41_RS03785 PF03649 Uncharacterised protein family (UPF0014) DK41_RS03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK41_RS03795 PF03466 LysR substrate binding domain DK41_RS03805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK41_RS03805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK41_RS03815 PF00294 pfkB family carbohydrate kinase DK41_RS03820 PF00703 Glycosyl hydrolases family 2 DK41_RS03820 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DK41_RS03820 PF02837 Glycosyl hydrolases family 2, sugar binding domain DK41_RS03825 PF07729 FCD domain DK41_RS03825 PF00392 Bacterial regulatory proteins, gntR family DK41_RS03830 PF01081 KDPG and KHG aldolase DK41_RS03835 PF02614 Glucuronate isomerase DK41_RS03840 PF03786 D-mannonate dehydratase (UxuA) DK41_RS03845 PF00106 short chain dehydrogenase DK41_RS03855 PF00933 Glycosyl hydrolase family 3 N terminal domain DK41_RS03860 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS03870 PF00557 Metallopeptidase family M24 DK41_RS03870 PF01321 Creatinase/Prolidase N-terminal domain DK41_RS03875 PF00356 Bacterial regulatory proteins, lacI family DK41_RS03880 PF00128 Alpha amylase, catalytic domain DK41_RS03880 PF09154 Domain of unknown function (DUF1939) DK41_RS03885 PF13439 Glycosyltransferase Family 4 DK41_RS03885 PF00534 Glycosyl transferases group 1 DK41_RS03890 PF00534 Glycosyl transferases group 1 DK41_RS03890 PF13439 Glycosyltransferase Family 4 DK41_RS03895 PF03129 Anticodon binding domain DK41_RS03895 PF02824 TGS domain DK41_RS03895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK41_RS03895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK41_RS03900 PF00072 Response regulator receiver domain DK41_RS03900 PF00486 Transcriptional regulatory protein, C terminal DK41_RS03910 PF03413 Peptidase propeptide and YPEB domain DK41_RS03915 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS03920 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS03925 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK41_RS03930 PF00005 ABC transporter DK41_RS03935 PF00486 Transcriptional regulatory protein, C terminal DK41_RS03935 PF00072 Response regulator receiver domain DK41_RS03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS03940 PF00672 HAMP domain DK41_RS03940 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS03940 PF13426 PAS domain DK41_RS03945 PF00753 Metallo-beta-lactamase superfamily DK41_RS03950 PF04304 Protein of unknown function (DUF454) DK41_RS03955 PF00035 Double-stranded RNA binding motif DK41_RS03955 PF14622 Ribonuclease-III-like DK41_RS03960 PF02463 RecF/RecN/SMC N terminal domain DK41_RS03960 PF06470 SMC proteins Flexible Hinge Domain DK41_RS03965 PF13808 DDE_Tnp_1-associated DK41_RS03965 PF01609 Transposase DDE domain DK41_RS03980 PF02881 SRP54-type protein, helical bundle domain DK41_RS03980 PF00448 SRP54-type protein, GTPase domain DK41_RS03990 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS03995 PF09323 Domain of unknown function (DUF1980) DK41_RS04000 PF03773 Predicted permease DK41_RS04015 PF09371 Tex-like protein N-terminal domain DK41_RS04015 PF00575 S1 RNA binding domain DK41_RS04015 PF17674 HHH domain DK41_RS04015 PF16921 Tex protein YqgF-like domain DK41_RS04020 PF10263 SprT-like family DK41_RS04025 PF04024 PspC domain DK41_RS04030 PF07475 HPr Serine kinase C-terminal domain DK41_RS04030 PF02603 HPr Serine kinase N terminus DK41_RS04035 PF01790 Prolipoprotein diacylglyceryl transferase DK41_RS04045 PF12732 YtxH-like protein DK41_RS04060 PF01136 Peptidase family U32 DK41_RS04060 PF16325 Peptidase family U32 C-terminal domain DK41_RS04065 PF02229 Transcriptional Coactivator p15 (PC4) DK41_RS04075 PF01566 Natural resistance-associated macrophage protein DK41_RS04080 PF01872 RibD C-terminal domain DK41_RS04080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK41_RS04085 PF00677 Lumazine binding domain DK41_RS04090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DK41_RS04090 PF00925 GTP cyclohydrolase II DK41_RS04095 PF00885 6,7-dimethyl-8-ribityllumazine synthase DK41_RS04100 PF01336 OB-fold nucleic acid binding domain DK41_RS04100 PF00152 tRNA synthetases class II (D, K and N) DK41_RS04115 PF04073 Aminoacyl-tRNA editing domain DK41_RS04120 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DK41_RS04125 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS04150 PF08439 Oligopeptidase F DK41_RS04150 PF01432 Peptidase family M3 DK41_RS04155 PF00311 Phosphoenolpyruvate carboxylase DK41_RS04160 PF01098 Cell cycle protein DK41_RS04165 PF03143 Elongation factor Tu C-terminal domain DK41_RS04165 PF03144 Elongation factor Tu domain 2 DK41_RS04165 PF00009 Elongation factor Tu GTP binding domain DK41_RS04170 PF00121 Triosephosphate isomerase DK41_RS04175 PF00300 Histidine phosphatase superfamily (branch 1) DK41_RS04180 PF00905 Penicillin binding protein transpeptidase domain DK41_RS04180 PF03717 Penicillin-binding Protein dimerisation domain DK41_RS04185 PF13662 Toprim domain DK41_RS04185 PF02132 RecR protein DK41_RS04190 PF01820 D-ala D-ala ligase N-terminus DK41_RS04190 PF07478 D-ala D-ala ligase C-terminus DK41_RS04195 PF02875 Mur ligase family, glutamate ligase domain DK41_RS04195 PF01225 Mur ligase family, catalytic domain DK41_RS04195 PF08245 Mur ligase middle domain DK41_RS04200 PF07690 Major Facilitator Superfamily DK41_RS04215 PF16658 Class II release factor RF3, C-terminal domain DK41_RS04215 PF03144 Elongation factor Tu domain 2 DK41_RS04215 PF00009 Elongation factor Tu GTP binding domain DK41_RS04220 PF08000 Bacterial PH domain DK41_RS04225 PF09383 NIL domain DK41_RS04225 PF00005 ABC transporter DK41_RS04230 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS04235 PF03180 NLPA lipoprotein DK41_RS04240 PF00271 Helicase conserved C-terminal domain DK41_RS04240 PF00270 DEAD/DEAH box helicase DK41_RS04245 PF01541 GIY-YIG catalytic domain DK41_RS04250 PF05175 Methyltransferase small domain DK41_RS04255 PF01553 Acyltransferase DK41_RS04260 PF10531 SLBB domain DK41_RS04265 PF13567 Domain of unknown function (DUF4131) DK41_RS04265 PF03772 Competence protein DK41_RS04265 PF00753 Metallo-beta-lactamase superfamily DK41_RS04275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DK41_RS04275 PF00356 Bacterial regulatory proteins, lacI family DK41_RS04280 PF07859 alpha/beta hydrolase fold DK41_RS04280 PF00934 PE family DK41_RS04285 PF01209 ubiE/COQ5 methyltransferase family DK41_RS04295 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DK41_RS04295 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DK41_RS04300 PF00874 PRD domain DK41_RS04300 PF03123 CAT RNA binding domain DK41_RS04305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK41_RS04305 PF00367 phosphotransferase system, EIIB DK41_RS04305 PF02378 Phosphotransferase system, EIIC DK41_RS04310 PF00232 Glycosyl hydrolase family 1 DK41_RS04315 PF17853 GGDEF-like domain DK41_RS04315 PF05651 Putative sugar diacid recognition DK41_RS04315 PF13556 PucR C-terminal helix-turn-helix domain DK41_RS04320 PF02595 Glycerate kinase family DK41_RS04335 PF01047 MarR family DK41_RS04340 PF02547 Queuosine biosynthesis protein DK41_RS04350 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DK41_RS04355 PF13409 Glutathione S-transferase, N-terminal domain DK41_RS04360 PF00849 RNA pseudouridylate synthase DK41_RS04360 PF01479 S4 domain DK41_RS04375 PF01432 Peptidase family M3 DK41_RS04375 PF08439 Oligopeptidase F DK41_RS04385 PF01596 O-methyltransferase DK41_RS04390 PF13145 PPIC-type PPIASE domain DK41_RS04395 PF04525 LURP-one-related DK41_RS04400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK41_RS04400 PF01411 tRNA synthetases class II (A) DK41_RS04400 PF02272 DHHA1 domain DK41_RS04405 PF04474 Protein of unknown function (DUF554) DK41_RS04410 PF01501 Glycosyl transferase family 8 DK41_RS04410 PF08437 Glycosyl transferase family 8 C-terminal DK41_RS04420 PF01381 Helix-turn-helix DK41_RS04430 PF09515 Thiamine transporter protein (Thia_YuaJ) DK41_RS04435 PF00268 Ribonucleotide reductase, small chain DK41_RS04440 PF08343 Ribonucleotide reductase N-terminal DK41_RS04440 PF02867 Ribonucleotide reductase, barrel domain DK41_RS04440 PF00317 Ribonucleotide reductase, all-alpha domain DK41_RS04445 PF00462 Glutaredoxin DK41_RS04450 PF00381 PTS HPr component phosphorylation site DK41_RS04455 PF02896 PEP-utilising enzyme, TIM barrel domain DK41_RS04455 PF00391 PEP-utilising enzyme, mobile domain DK41_RS04455 PF05524 PEP-utilising enzyme, N-terminal DK41_RS04460 PF00171 Aldehyde dehydrogenase family DK41_RS04465 PF01522 Polysaccharide deacetylase DK41_RS04465 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DK41_RS04475 PF00271 Helicase conserved C-terminal domain DK41_RS04475 PF00270 DEAD/DEAH box helicase DK41_RS04480 PF00485 Phosphoribulokinase / Uridine kinase family DK41_RS04485 PF01609 Transposase DDE domain DK41_RS04485 PF13808 DDE_Tnp_1-associated DK41_RS04490 PF13185 GAF domain DK41_RS04495 PF12169 DNA polymerase III subunits gamma and tau domain III DK41_RS04505 PF08279 HTH domain DK41_RS04505 PF03099 Biotin/lipoate A/B protein ligase family DK41_RS04505 PF02237 Biotin protein ligase C terminal domain DK41_RS04510 PF02773 S-adenosylmethionine synthetase, C-terminal domain DK41_RS04510 PF02772 S-adenosylmethionine synthetase, central domain DK41_RS04510 PF00438 S-adenosylmethionine synthetase, N-terminal domain DK41_RS04535 PF09819 ABC-type cobalt transport system, permease component DK41_RS04540 PF00005 ABC transporter DK41_RS04550 PF03070 TENA/THI-4/PQQC family DK41_RS04555 PF08543 Phosphomethylpyrimidine kinase DK41_RS04560 PF02110 Hydroxyethylthiazole kinase family DK41_RS04565 PF02581 Thiamine monophosphate synthase DK41_RS04570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK41_RS04580 PF00392 Bacterial regulatory proteins, gntR family DK41_RS04580 PF00571 CBS domain DK41_RS04580 PF03061 Thioesterase superfamily DK41_RS04580 PF07085 DRTGG domain DK41_RS04585 PF00557 Metallopeptidase family M24 DK41_RS04595 PF04138 GtrA-like protein DK41_RS04600 PF06177 QueT transporter DK41_RS04605 PF12826 Helix-hairpin-helix motif DK41_RS04605 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DK41_RS04605 PF03120 NAD-dependent DNA ligase OB-fold domain DK41_RS04605 PF01653 NAD-dependent DNA ligase adenylation domain DK41_RS04605 PF00533 BRCA1 C Terminus (BRCT) domain DK41_RS04610 PF00781 Diacylglycerol kinase catalytic domain DK41_RS04615 PF00128 Alpha amylase, catalytic domain DK41_RS04615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK41_RS04615 PF17999 Pullulanase N1-terminal domain DK41_RS04620 PF02806 Alpha amylase, C-terminal all-beta domain DK41_RS04620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK41_RS04620 PF00128 Alpha amylase, catalytic domain DK41_RS04625 PF00483 Nucleotidyl transferase DK41_RS04625 PF00132 Bacterial transferase hexapeptide (six repeats) DK41_RS04630 PF00483 Nucleotidyl transferase DK41_RS04635 PF08323 Starch synthase catalytic domain DK41_RS04635 PF00534 Glycosyl transferases group 1 DK41_RS04640 PF00137 ATP synthase subunit C DK41_RS04645 PF00119 ATP synthase A chain DK41_RS04650 PF00430 ATP synthase B/B' CF(0) DK41_RS04655 PF00213 ATP synthase delta (OSCP) subunit DK41_RS04660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK41_RS04660 PF00306 ATP synthase alpha/beta chain, C terminal domain DK41_RS04660 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK41_RS04665 PF00231 ATP synthase DK41_RS04670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK41_RS04670 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK41_RS04675 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DK41_RS04675 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DK41_RS04685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK41_RS04695 PF01223 DNA/RNA non-specific endonuclease DK41_RS04700 PF01409 tRNA synthetases class II core domain (F) DK41_RS04700 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DK41_RS04705 PF13673 Acetyltransferase (GNAT) domain DK41_RS04710 PF03147 Ferredoxin-fold anticodon binding domain DK41_RS04710 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DK41_RS04710 PF01588 Putative tRNA binding domain DK41_RS04710 PF03484 tRNA synthetase B5 domain DK41_RS04710 PF03483 B3/4 domain DK41_RS04715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS04725 PF04228 Putative neutral zinc metallopeptidase DK41_RS04730 PF12705 PD-(D/E)XK nuclease superfamily DK41_RS04735 PF00580 UvrD/REP helicase N-terminal domain DK41_RS04735 PF13361 UvrD-like helicase C-terminal domain DK41_RS04735 PF12705 PD-(D/E)XK nuclease superfamily DK41_RS04745 PF10396 GTP-binding protein TrmE N-terminus DK41_RS04745 PF01926 50S ribosome-binding GTPase DK41_RS04745 PF12631 MnmE helical domain DK41_RS04750 PF00005 ABC transporter DK41_RS04750 PF12848 ABC transporter DK41_RS04750 PF16326 ABC transporter C-terminal domain DK41_RS04755 PF00676 Dehydrogenase E1 component DK41_RS04760 PF02780 Transketolase, C-terminal domain DK41_RS04760 PF02779 Transketolase, pyrimidine binding domain DK41_RS04760 PF00364 Biotin-requiring enzyme DK41_RS04765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DK41_RS04765 PF00364 Biotin-requiring enzyme DK41_RS04765 PF02817 e3 binding domain DK41_RS04770 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS04770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK41_RS04775 PF10437 Bacterial lipoate protein ligase C-terminus DK41_RS04775 PF03099 Biotin/lipoate A/B protein ligase family DK41_RS04780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS04785 PF07685 CobB/CobQ-like glutamine amidotransferase domain DK41_RS04790 PF08353 Domain of unknown function (DUF1727) DK41_RS04790 PF08245 Mur ligase middle domain DK41_RS04795 PF02457 DisA bacterial checkpoint controller nucleotide-binding DK41_RS04805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK41_RS04805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK41_RS04805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK41_RS04805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK41_RS04820 PF04055 Radical SAM superfamily DK41_RS04820 PF06969 HemN C-terminal domain DK41_RS04830 PF13344 Haloacid dehalogenase-like hydrolase DK41_RS04840 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 DK41_RS04840 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 DK41_RS04840 PF13395 HNH endonuclease DK41_RS04840 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 DK41_RS04845 PF01867 CRISPR associated protein Cas1 DK41_RS04850 PF09827 CRISPR associated protein Cas2 DK41_RS04855 PF09711 CRISPR-associated protein (Cas_Csn2) DK41_RS04860 PF00334 Nucleoside diphosphate kinase DK41_RS04865 PF00679 Elongation factor G C-terminus DK41_RS04865 PF00009 Elongation factor Tu GTP binding domain DK41_RS04865 PF03144 Elongation factor Tu domain 2 DK41_RS04865 PF06421 GTP-binding protein LepA C-terminus DK41_RS04875 PF01966 HD domain DK41_RS04880 PF13673 Acetyltransferase (GNAT) domain DK41_RS04885 PF01641 SelR domain DK41_RS04890 PF00689 Cation transporting ATPase, C-terminus DK41_RS04890 PF00690 Cation transporter/ATPase, N-terminus DK41_RS04900 PF00132 Bacterial transferase hexapeptide (six repeats) DK41_RS04925 PF00005 ABC transporter DK41_RS04930 PF00392 Bacterial regulatory proteins, gntR family DK41_RS04935 PF14579 Helix-hairpin-helix motif DK41_RS04935 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK41_RS04935 PF02811 PHP domain DK41_RS04935 PF01336 OB-fold nucleic acid binding domain DK41_RS04935 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK41_RS04940 PF00365 Phosphofructokinase DK41_RS04945 PF00224 Pyruvate kinase, barrel domain DK41_RS04945 PF02887 Pyruvate kinase, alpha/beta domain DK41_RS04950 PF10502 Signal peptidase, peptidase S26 DK41_RS04955 PF01380 SIS domain DK41_RS04960 PF08274 PhnA Zinc-Ribbon DK41_RS04960 PF03831 PhnA domain DK41_RS04965 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS04970 PF00005 ABC transporter DK41_RS04980 PF01649 Ribosomal protein S20 DK41_RS04985 PF00485 Phosphoribulokinase / Uridine kinase family DK41_RS04990 PF05175 Methyltransferase small domain DK41_RS04995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK41_RS05000 PF02608 ABC transporter substrate-binding protein PnrA-like DK41_RS05005 PF00005 ABC transporter DK41_RS05010 PF02653 Branched-chain amino acid transport system / permease component DK41_RS05015 PF02653 Branched-chain amino acid transport system / permease component DK41_RS05020 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS05020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK41_RS05025 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DK41_RS05025 PF00056 lactate/malate dehydrogenase, NAD binding domain DK41_RS05030 PF03989 DNA gyrase C-terminal domain, beta-propeller DK41_RS05030 PF00521 DNA gyrase/topoisomerase IV, subunit A DK41_RS05035 PF04203 Sortase domain DK41_RS05040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK41_RS05045 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS05055 PF00999 Sodium/hydrogen exchanger family DK41_RS05065 PF00117 Glutamine amidotransferase class-I DK41_RS05065 PF00958 GMP synthase C terminal domain DK41_RS05065 PF02540 NAD synthase DK41_RS05070 PF00392 Bacterial regulatory proteins, gntR family DK41_RS05070 PF07702 UTRA domain DK41_RS05075 PF01134 Glucose inhibited division protein A DK41_RS05085 PF03180 NLPA lipoprotein DK41_RS05095 PF03572 Peptidase family S41 DK41_RS05100 PF00005 ABC transporter DK41_RS05110 PF00486 Transcriptional regulatory protein, C terminal DK41_RS05110 PF00072 Response regulator receiver domain DK41_RS05115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS05120 PF00589 Phage integrase family DK41_RS05120 PF13495 Phage integrase, N-terminal SAM-like domain DK41_RS05125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK41_RS05140 PF02978 Signal peptide binding domain DK41_RS05140 PF02881 SRP54-type protein, helical bundle domain DK41_RS05140 PF00448 SRP54-type protein, GTPase domain DK41_RS05145 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DK41_RS05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS05150 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS05155 PF00072 Response regulator receiver domain DK41_RS05155 PF00486 Transcriptional regulatory protein, C terminal DK41_RS05160 PF11838 ERAP1-like C-terminal domain DK41_RS05160 PF01433 Peptidase family M1 domain DK41_RS05165 PF01895 PhoU domain DK41_RS05170 PF00005 ABC transporter DK41_RS05175 PF00005 ABC transporter DK41_RS05180 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS05185 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS05190 PF12849 PBP superfamily domain DK41_RS05195 PF01189 16S rRNA methyltransferase RsmB/F DK41_RS05195 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DK41_RS05195 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DK41_RS05200 PF00459 Inositol monophosphatase family DK41_RS05205 PF05256 Uncharacterised protein family (UPF0223) DK41_RS05210 PF03960 ArsC family DK41_RS05215 PF01687 Riboflavin kinase DK41_RS05215 PF06574 FAD synthetase DK41_RS05220 PF01509 TruB family pseudouridylate synthase (N terminal domain) DK41_RS05220 PF16198 tRNA pseudouridylate synthase B C-terminal domain DK41_RS05250 PF00005 ABC transporter DK41_RS05255 PF01396 Topoisomerase DNA binding C4 zinc finger DK41_RS05255 PF01751 Toprim domain DK41_RS05255 PF01131 DNA topoisomerase DK41_RS05260 PF02481 DNA recombination-mediator protein A DK41_RS05260 PF18255 DNA processing protein A sterile alpha motif domain DK41_RS05265 PF01497 Periplasmic binding protein DK41_RS05270 PF00005 ABC transporter DK41_RS05275 PF01032 FecCD transport family DK41_RS05280 PF01032 FecCD transport family DK41_RS05285 PF12464 Maltose acetyltransferase DK41_RS05285 PF14602 Hexapeptide repeat of succinyl-transferase DK41_RS05290 PF01351 Ribonuclease HII DK41_RS05295 PF01926 50S ribosome-binding GTPase DK41_RS05300 PF03734 L,D-transpeptidase catalytic domain DK41_RS05305 PF02554 Carbon starvation protein CstA DK41_RS05310 PF00072 Response regulator receiver domain DK41_RS05310 PF04397 LytTr DNA-binding domain DK41_RS05315 PF06580 Histidine kinase DK41_RS05315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS05315 PF13492 GAF domain DK41_RS05315 PF07694 5TMR of 5TMR-LYT DK41_RS05390 PF12538 DNA transporter DK41_RS05390 PF01580 FtsK/SpoIIIE family DK41_RS05400 PF10140 WXG100 protein secretion system (Wss), protein YukC DK41_RS05420 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS05430 PF06013 Proteins of 100 residues with WXG DK41_RS05445 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DK41_RS05445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK41_RS05445 PF02142 MGS-like domain DK41_RS05450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DK41_RS05450 PF00117 Glutamine amidotransferase class-I DK41_RS05455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK41_RS05455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK41_RS05460 PF01979 Amidohydrolase family DK41_RS05465 PF00156 Phosphoribosyl transferase domain DK41_RS05470 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK41_RS05480 PF00005 ABC transporter DK41_RS05480 PF12848 ABC transporter DK41_RS05490 PF01118 Semialdehyde dehydrogenase, NAD binding domain DK41_RS05490 PF02774 Semialdehyde dehydrogenase, dimerisation domain DK41_RS05500 PF13091 PLD-like domain DK41_RS05505 PF01268 Formate--tetrahydrofolate ligase DK41_RS05510 PF10437 Bacterial lipoate protein ligase C-terminus DK41_RS05510 PF03099 Biotin/lipoate A/B protein ligase family DK41_RS05520 PF01661 Macro domain DK41_RS05525 PF01597 Glycine cleavage H-protein DK41_RS05535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DK41_RS05540 PF03099 Biotin/lipoate A/B protein ligase family DK41_RS05550 PF02441 Flavoprotein DK41_RS05555 PF12822 ECF transporter, substrate-specific component DK41_RS05560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK41_RS05560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK41_RS05560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK41_RS05560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK41_RS05570 PF13276 HTH-like domain DK41_RS05570 PF00665 Integrase core domain DK41_RS05570 PF13333 Integrase core domain DK41_RS05580 PF00664 ABC transporter transmembrane region DK41_RS05580 PF00005 ABC transporter DK41_RS05585 PF00005 ABC transporter DK41_RS05585 PF00664 ABC transporter transmembrane region DK41_RS05600 PF00464 Serine hydroxymethyltransferase DK41_RS05610 PF05175 Methyltransferase small domain DK41_RS05615 PF03462 PCRF domain DK41_RS05615 PF00472 RF-1 domain DK41_RS05620 PF00265 Thymidine kinase DK41_RS05625 PF01361 Tautomerase enzyme DK41_RS05630 PF02424 ApbE family DK41_RS05635 PF03358 NADPH-dependent FMN reductase DK41_RS05635 PF04205 FMN-binding domain DK41_RS05635 PF00890 FAD binding domain DK41_RS05640 PF04205 FMN-binding domain DK41_RS05640 PF03358 NADPH-dependent FMN reductase DK41_RS05640 PF00890 FAD binding domain DK41_RS05650 PF00860 Permease family DK41_RS05655 PF00156 Phosphoribosyl transferase domain DK41_RS05660 PF00478 IMP dehydrogenase / GMP reductase domain DK41_RS05665 PF07690 Major Facilitator Superfamily DK41_RS05675 PF02705 K+ potassium transporter DK41_RS05680 PF00106 short chain dehydrogenase DK41_RS05685 PF01515 Phosphate acetyl/butaryl transferase DK41_RS05690 PF00849 RNA pseudouridylate synthase DK41_RS05695 PF01513 ATP-NAD kinase DK41_RS05700 PF04607 Region found in RelA / SpoT proteins DK41_RS05710 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK41_RS05710 PF14572 Phosphoribosyl synthetase-associated domain DK41_RS05715 PF00266 Aminotransferase class-V DK41_RS05725 PF06971 Putative DNA-binding protein N-terminus DK41_RS05725 PF02629 CoA binding domain DK41_RS05730 PF04002 RadC-like JAB domain DK41_RS05735 PF01594 AI-2E family transporter DK41_RS05755 PF12833 Helix-turn-helix domain DK41_RS05755 PF12852 Cupin DK41_RS05760 PF00654 Voltage gated chloride channel DK41_RS05765 PF13416 Bacterial extracellular solute-binding protein DK41_RS05770 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS05775 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS05780 PF08402 TOBE domain DK41_RS05780 PF00005 ABC transporter DK41_RS05785 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DK41_RS05785 PF01565 FAD binding domain DK41_RS05790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DK41_RS05795 PF02152 Dihydroneopterin aldolase DK41_RS05800 PF00809 Pterin binding enzyme DK41_RS05805 PF01227 GTP cyclohydrolase I DK41_RS05810 PF08245 Mur ligase middle domain DK41_RS05810 PF02875 Mur ligase family, glutamate ligase domain DK41_RS05815 PF00892 EamA-like transporter family DK41_RS05820 PF00288 GHMP kinases N terminal domain DK41_RS05820 PF08544 GHMP kinases C terminal DK41_RS05825 PF00742 Homoserine dehydrogenase DK41_RS05825 PF03447 Homoserine dehydrogenase, NAD binding domain DK41_RS05830 PF01522 Polysaccharide deacetylase DK41_RS05840 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS05845 PF02028 BCCT, betaine/carnitine/choline family transporter DK41_RS05850 PF00171 Aldehyde dehydrogenase family DK41_RS05855 PF03601 Conserved hypothetical protein 698 DK41_RS05880 PF08534 Redoxin DK41_RS05900 PF03780 Asp23 family, cell envelope-related function DK41_RS05905 PF05532 CsbD-like DK41_RS05910 PF03780 Asp23 family, cell envelope-related function DK41_RS05925 PF04226 Transglycosylase associated protein DK41_RS05935 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS05940 PF13361 UvrD-like helicase C-terminal domain DK41_RS05940 PF00580 UvrD/REP helicase N-terminal domain DK41_RS05955 PF00860 Permease family DK41_RS05960 PF01235 Sodium:alanine symporter family DK41_RS05965 PF16916 Dimerisation domain of Zinc Transporter DK41_RS05965 PF01545 Cation efflux family DK41_RS05970 PF03788 LrgA family DK41_RS05975 PF04172 LrgB-like family DK41_RS06010 PF02899 Phage integrase, N-terminal SAM-like domain DK41_RS06010 PF00589 Phage integrase family DK41_RS06025 PF00575 S1 RNA binding domain DK41_RS06045 PF01063 Amino-transferase class IV DK41_RS06050 PF03989 DNA gyrase C-terminal domain, beta-propeller DK41_RS06050 PF00521 DNA gyrase/topoisomerase IV, subunit A DK41_RS06055 PF01751 Toprim domain DK41_RS06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS06055 PF00204 DNA gyrase B DK41_RS06055 PF00986 DNA gyrase B subunit, carboxyl terminus DK41_RS06060 PF02660 Glycerol-3-phosphate acyltransferase DK41_RS06065 PF03167 Uracil DNA glycosylase superfamily DK41_RS06075 PF13472 GDSL-like Lipase/Acylhydrolase family DK41_RS06075 PF02348 Cytidylyltransferase DK41_RS06085 PF02350 UDP-N-acetylglucosamine 2-epimerase DK41_RS06090 PF08666 SAF domain DK41_RS06090 PF03102 NeuB family DK41_RS06095 PF01943 Polysaccharide biosynthesis protein DK41_RS06115 PF01501 Glycosyl transferase family 8 DK41_RS06115 PF00535 Glycosyl transferase family 2 DK41_RS06120 PF00535 Glycosyl transferase family 2 DK41_RS06120 PF01501 Glycosyl transferase family 8 DK41_RS06130 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase DK41_RS06130 PF04101 Glycosyltransferase family 28 C-terminal domain DK41_RS06135 PF03033 Glycosyltransferase family 28 N-terminal domain DK41_RS06135 PF04101 Glycosyltransferase family 28 C-terminal domain DK41_RS06140 PF02397 Bacterial sugar transferase DK41_RS06145 PF13614 AAA domain DK41_RS06150 PF02706 Chain length determinant protein DK41_RS06160 PF03816 Cell envelope-related transcriptional attenuator domain DK41_RS06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK41_RS06165 PF03466 LysR substrate binding domain DK41_RS06175 PF01048 Phosphorylase superfamily DK41_RS06180 PF00654 Voltage gated chloride channel DK41_RS06185 PF01048 Phosphorylase superfamily DK41_RS06190 PF03960 ArsC family DK41_RS06195 PF01676 Metalloenzyme superfamily DK41_RS06200 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DK41_RS06210 PF00756 Putative esterase DK41_RS06215 PF17770 Ribonuclease J C-terminal domain DK41_RS06215 PF00753 Metallo-beta-lactamase superfamily DK41_RS06215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK41_RS06220 PF00005 ABC transporter DK41_RS06220 PF08402 TOBE domain DK41_RS06235 PF05670 NFACT protein RNA binding domain DK41_RS06240 PF03306 Alpha-acetolactate decarboxylase DK41_RS06245 PF00205 Thiamine pyrophosphate enzyme, central domain DK41_RS06245 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DK41_RS06245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DK41_RS06255 PF01594 AI-2E family transporter DK41_RS06265 PF00293 NUDIX domain DK41_RS06270 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DK41_RS06270 PF02278 Polysaccharide lyase family 8, super-sandwich domain DK41_RS06270 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DK41_RS06275 PF16363 GDP-mannose 4,6 dehydratase DK41_RS06280 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DK41_RS06285 PF00483 Nucleotidyl transferase DK41_RS06290 PF01266 FAD dependent oxidoreductase DK41_RS06295 PF01784 NIF3 (NGG1p interacting factor 3) DK41_RS06300 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DK41_RS06310 PF00156 Phosphoribosyl transferase domain DK41_RS06320 PF01368 DHH family DK41_RS06320 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DK41_RS06320 PF17768 RecJ OB domain DK41_RS06320 PF02272 DHHA1 domain DK41_RS06325 PF00106 short chain dehydrogenase DK41_RS06330 PF00753 Metallo-beta-lactamase superfamily DK41_RS06330 PF12706 Beta-lactamase superfamily domain DK41_RS06340 PF13167 GTP-binding GTPase N-terminal DK41_RS06340 PF16360 GTP-binding GTPase Middle Region DK41_RS06340 PF01926 50S ribosome-binding GTPase DK41_RS06370 PF17967 Pullulanase N2 domain DK41_RS06370 PF18494 Pullulanase Ins domain DK41_RS06370 PF03714 Bacterial pullanase-associated domain DK41_RS06370 PF11852 Domain of unknown function (DUF3372) DK41_RS06370 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK41_RS06380 PF03167 Uracil DNA glycosylase superfamily DK41_RS06385 PF01546 Peptidase family M20/M25/M40 DK41_RS06395 PF03009 Glycerophosphoryl diester phosphodiesterase family DK41_RS06400 PF01541 GIY-YIG catalytic domain DK41_RS06400 PF02151 UvrB/uvrC motif DK41_RS06400 PF08459 UvrC Helix-hairpin-helix N-terminal DK41_RS06405 PF02677 Epoxyqueuosine reductase QueH DK41_RS06410 PF01554 MatE DK41_RS06445 PF13333 Integrase core domain DK41_RS06445 PF00665 Integrase core domain DK41_RS06445 PF13276 HTH-like domain DK41_RS06455 PF01610 Transposase DK41_RS06455 PF13683 Integrase core domain DK41_RS06465 PF01297 Zinc-uptake complex component A periplasmic DK41_RS06470 PF13808 DDE_Tnp_1-associated DK41_RS06470 PF01609 Transposase DDE domain DK41_RS06475 PF00082 Subtilase family DK41_RS06475 PF06280 Fn3-like domain DK41_RS06475 PF02225 PA domain DK41_RS06495 PF00929 Exonuclease DK41_RS06495 PF02811 PHP domain DK41_RS06495 PF11490 DNA polymerase III polC-type N-terminus II DK41_RS06495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK41_RS06495 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK41_RS06495 PF14579 Helix-hairpin-helix motif DK41_RS06505 PF13495 Phage integrase, N-terminal SAM-like domain DK41_RS06505 PF00589 Phage integrase family DK41_RS06515 PF01719 Plasmid replication protein DK41_RS06560 PF16320 Ribosomal protein L7/L12 dimerisation domain DK41_RS06560 PF00542 Ribosomal protein L7/L12 C-terminal domain DK41_RS06565 PF00466 Ribosomal protein L10 DK41_RS06570 PF07724 AAA domain (Cdc48 subfamily) DK41_RS06570 PF17871 AAA lid domain DK41_RS06570 PF10431 C-terminal, D2-small domain, of ClpB protein DK41_RS06570 PF00004 ATPase family associated with various cellular activities (AAA) DK41_RS06575 PF02574 Homocysteine S-methyltransferase DK41_RS06600 PF01926 50S ribosome-binding GTPase DK41_RS06605 PF07724 AAA domain (Cdc48 subfamily) DK41_RS06605 PF10431 C-terminal, D2-small domain, of ClpB protein DK41_RS06605 PF06689 ClpX C4-type zinc finger DK41_RS06615 PF00186 Dihydrofolate reductase DK41_RS06620 PF00303 Thymidylate synthase DK41_RS06625 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DK41_RS06625 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DK41_RS06630 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DK41_RS06640 PF03006 Haemolysin-III related DK41_RS06645 PF00781 Diacylglycerol kinase catalytic domain DK41_RS06660 PF01070 FMN-dependent dehydrogenase DK41_RS06665 PF08544 GHMP kinases C terminal DK41_RS06665 PF00288 GHMP kinases N terminal domain DK41_RS06675 PF08544 GHMP kinases C terminal DK41_RS06675 PF00288 GHMP kinases N terminal domain DK41_RS06675 PF10509 Galactokinase galactose-binding signature DK41_RS06680 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS06685 PF00486 Transcriptional regulatory protein, C terminal DK41_RS06685 PF00072 Response regulator receiver domain DK41_RS06690 PF04607 Region found in RelA / SpoT proteins DK41_RS06695 PF00005 ABC transporter DK41_RS06695 PF00664 ABC transporter transmembrane region DK41_RS06700 PF00005 ABC transporter DK41_RS06700 PF00664 ABC transporter transmembrane region DK41_RS06710 PF00149 Calcineurin-like phosphoesterase DK41_RS06710 PF17936 Bacterial Ig domain DK41_RS06710 PF02872 5'-nucleotidase, C-terminal domain DK41_RS06715 PF01327 Polypeptide deformylase DK41_RS06720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DK41_RS06720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DK41_RS06730 PF00664 ABC transporter transmembrane region DK41_RS06730 PF00005 ABC transporter DK41_RS06735 PF00005 ABC transporter DK41_RS06735 PF00664 ABC transporter transmembrane region DK41_RS06745 PF12848 ABC transporter DK41_RS06745 PF00005 ABC transporter DK41_RS06745 PF16326 ABC transporter C-terminal domain DK41_RS06750 PF13735 tRNA nucleotidyltransferase domain 2 putative DK41_RS06750 PF12627 Probable RNA and SrmB- binding site of polymerase A DK41_RS06750 PF01743 Poly A polymerase head domain DK41_RS06755 PF02645 Uncharacterised protein, DegV family COG1307 DK41_RS06765 PF13808 DDE_Tnp_1-associated DK41_RS06765 PF01609 Transposase DDE domain DK41_RS06780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK41_RS06780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK41_RS06785 PF00294 pfkB family carbohydrate kinase DK41_RS06790 PF00455 DeoR C terminal sensor domain DK41_RS06790 PF08220 DeoR-like helix-turn-helix domain DK41_RS06805 PF02558 Ketopantoate reductase PanE/ApbA DK41_RS06805 PF08546 Ketopantoate reductase PanE/ApbA C terminal DK41_RS06815 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS06820 PF01746 tRNA (Guanine-1)-methyltransferase DK41_RS06825 PF05239 PRC-barrel domain DK41_RS06825 PF01782 RimM N-terminal domain DK41_RS06850 PF00886 Ribosomal protein S16 DK41_RS06855 PF02687 FtsX-like permease family DK41_RS06855 PF12704 MacB-like periplasmic core domain DK41_RS06860 PF00005 ABC transporter DK41_RS06865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DK41_RS06870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK41_RS06870 PF02142 MGS-like domain DK41_RS06870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DK41_RS06875 PF00117 Glutamine amidotransferase class-I DK41_RS06875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DK41_RS06880 PF00156 Phosphoribosyl transferase domain DK41_RS06885 PF01479 S4 domain DK41_RS06885 PF00849 RNA pseudouridylate synthase DK41_RS06890 PF01252 Signal peptidase (SPase) II DK41_RS06895 PF03466 LysR substrate binding domain DK41_RS06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK41_RS06900 PF01016 Ribosomal L27 protein DK41_RS06910 PF00829 Ribosomal prokaryotic L21 protein DK41_RS06920 PF02926 THUMP domain DK41_RS06920 PF02568 Thiamine biosynthesis protein (ThiI) DK41_RS06925 PF00266 Aminotransferase class-V DK41_RS06935 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS06935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK41_RS06940 PF06133 Control of competence regulator ComK, YlbF/YmcA DK41_RS06945 PF01264 Chorismate synthase DK41_RS06950 PF01761 3-dehydroquinate synthase DK41_RS06955 PF01487 Type I 3-dehydroquinase DK41_RS06960 PF10672 S-adenosylmethionine-dependent methyltransferase DK41_RS06960 PF17785 PUA-like domain DK41_RS06965 PF00884 Sulfatase DK41_RS06970 PF00453 Ribosomal protein L20 DK41_RS06975 PF01632 Ribosomal protein L35 DK41_RS06980 PF05198 Translation initiation factor IF-3, N-terminal domain DK41_RS06980 PF00707 Translation initiation factor IF-3, C-terminal domain DK41_RS06985 PF02224 Cytidylate kinase DK41_RS07010 PF01943 Polysaccharide biosynthesis protein DK41_RS07010 PF14667 Polysaccharide biosynthesis C-terminal domain DK41_RS07015 PF02875 Mur ligase family, glutamate ligase domain DK41_RS07015 PF08245 Mur ligase middle domain DK41_RS07020 PF00005 ABC transporter DK41_RS07025 PF01497 Periplasmic binding protein DK41_RS07030 PF01032 FecCD transport family DK41_RS07035 PF01032 FecCD transport family DK41_RS07045 PF01368 DHH family DK41_RS07045 PF02833 DHHA2 domain DK41_RS07050 PF04055 Radical SAM superfamily DK41_RS07055 PF01595 Cyclin M transmembrane N-terminal domain DK41_RS07055 PF03471 Transporter associated domain DK41_RS07055 PF00571 CBS domain DK41_RS07060 PF06962 Putative rRNA methylase DK41_RS07065 PF04055 Radical SAM superfamily DK41_RS07065 PF16199 Radical_SAM C-terminal domain DK41_RS07070 PF01569 PAP2 superfamily DK41_RS07075 PF12822 ECF transporter, substrate-specific component DK41_RS07110 PF00534 Glycosyl transferases group 1 DK41_RS07110 PF08323 Starch synthase catalytic domain DK41_RS07115 PF00535 Glycosyl transferase family 2 DK41_RS07120 PF14667 Polysaccharide biosynthesis C-terminal domain DK41_RS07120 PF01943 Polysaccharide biosynthesis protein DK41_RS07130 PF00535 Glycosyl transferase family 2 DK41_RS07135 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DK41_RS07135 PF00535 Glycosyl transferase family 2 DK41_RS07145 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DK41_RS07150 PF04991 LicD family DK41_RS07165 PF00535 Glycosyl transferase family 2 DK41_RS07170 PF00535 Glycosyl transferase family 2 DK41_RS07180 PF04321 RmlD substrate binding domain DK41_RS07185 PF01883 Iron-sulfur cluster assembly protein DK41_RS07190 PF04545 Sigma-70, region 4 DK41_RS07190 PF04539 Sigma-70 region 3 DK41_RS07190 PF04542 Sigma-70 region 2 DK41_RS07190 PF00140 Sigma-70 factor, region 1.2 DK41_RS07190 PF03979 Sigma-70 factor, region 1.1 DK41_RS07195 PF01807 CHC2 zinc finger DK41_RS07195 PF08275 DNA primase catalytic core, N-terminal domain DK41_RS07195 PF10410 DnaB-helicase binding domain of primase DK41_RS07200 PF01741 Large-conductance mechanosensitive channel, MscL DK41_RS07205 PF01165 Ribosomal protein S21 DK41_RS07215 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK41_RS07230 PF00581 Rhodanese-like domain DK41_RS07230 PF12368 Rhodanase C-terminal DK41_RS07230 PF17773 UPF0176 acylphosphatase like domain DK41_RS07240 PF07690 Major Facilitator Superfamily DK41_RS07250 PF00343 Carbohydrate phosphorylase DK41_RS07255 PF02446 4-alpha-glucanotransferase DK41_RS07260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DK41_RS07260 PF00356 Bacterial regulatory proteins, lacI family DK41_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS07280 PF00854 POT family DK41_RS07300 PF00534 Glycosyl transferases group 1 DK41_RS07305 PF07517 SecA DEAD-like domain DK41_RS07305 PF01043 SecA preprotein cross-linking domain DK41_RS07305 PF07516 SecA Wing and Scaffold domain DK41_RS07315 PF16929 Accessory Sec system GspB-transporter DK41_RS07320 PF16993 Accessory Sec system protein Asp1 DK41_RS07325 PF00344 SecY translocase DK41_RS07330 PF08759 Glycosyltransferase GT-D fold DK41_RS07330 PF01501 Glycosyl transferase family 8 DK41_RS07335 PF00535 Glycosyl transferase family 2 DK41_RS07335 PF01501 Glycosyl transferase family 8 DK41_RS07340 PF01501 Glycosyl transferase family 8 DK41_RS07340 PF08759 Glycosyltransferase GT-D fold DK41_RS07345 PF01501 Glycosyl transferase family 8 DK41_RS07345 PF00535 Glycosyl transferase family 2 DK41_RS07350 PF08759 Glycosyltransferase GT-D fold DK41_RS07350 PF01501 Glycosyl transferase family 8 DK41_RS07360 PF04650 YSIRK type signal peptide DK41_RS07360 PF17210 SdrD B-like domain DK41_RS07360 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DK41_RS07360 PF17961 Bacterial Ig domain DK41_RS07360 PF00746 LPXTG cell wall anchor motif DK41_RS07370 PF12344 Ultra-violet resistance protein B DK41_RS07370 PF02151 UvrB/uvrC motif DK41_RS07370 PF04851 Type III restriction enzyme, res subunit DK41_RS07370 PF00271 Helicase conserved C-terminal domain DK41_RS07370 PF17757 UvrB interaction domain DK41_RS07380 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS07385 PF00005 ABC transporter DK41_RS07400 PF09269 Domain of unknown function (DUF1967) DK41_RS07400 PF01926 50S ribosome-binding GTPase DK41_RS07400 PF01018 GTP1/OBG DK41_RS07410 PF02073 Thermophilic metalloprotease (M29) DK41_RS07420 PF01425 Amidase DK41_RS07425 PF00849 RNA pseudouridylate synthase DK41_RS07425 PF01479 S4 domain DK41_RS07430 PF00248 Aldo/keto reductase family DK41_RS07435 PF00881 Nitroreductase family DK41_RS07440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK41_RS07445 PF00535 Glycosyl transferase family 2 DK41_RS07450 PF00324 Amino acid permease DK41_RS07455 PF01668 SmpB protein DK41_RS07460 PF00575 S1 RNA binding domain DK41_RS07460 PF00773 RNB domain DK41_RS07460 PF08206 Ribonuclease B OB domain DK41_RS07460 PF17876 Cold shock domain DK41_RS07470 PF07690 Major Facilitator Superfamily DK41_RS07470 PF00083 Sugar (and other) transporter DK41_RS07480 PF00005 ABC transporter DK41_RS07480 PF13732 Domain of unknown function (DUF4162) DK41_RS07485 PF01121 Dephospho-CoA kinase DK41_RS07490 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DK41_RS07490 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DK41_RS07490 PF06827 Zinc finger found in FPG and IleRS DK41_RS07495 PF01381 Helix-turn-helix DK41_RS07530 PF01926 50S ribosome-binding GTPase DK41_RS07530 PF07650 KH domain DK41_RS07535 PF01219 Prokaryotic diacylglycerol kinase DK41_RS07540 PF02130 Uncharacterized protein family UPF0054 DK41_RS07550 PF13344 Haloacid dehalogenase-like hydrolase DK41_RS07550 PF00293 NUDIX domain DK41_RS07560 PF02562 PhoH-like protein DK41_RS07565 PF06100 MCRA family DK41_RS07570 PF06855 YozE SAM-like fold DK41_RS07575 PF01625 Peptide methionine sulfoxide reductase DK41_RS07585 PF01765 Ribosome recycling factor DK41_RS07590 PF00696 Amino acid kinase family DK41_RS07595 PF00005 ABC transporter DK41_RS07600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK41_RS07600 PF00005 ABC transporter DK41_RS07605 PF12911 N-terminal TM domain of oligopeptide transport permease C DK41_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS07615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK41_RS07620 PF00687 Ribosomal protein L1p/L10e family DK41_RS07625 PF00298 Ribosomal protein L11, RNA binding domain DK41_RS07625 PF03946 Ribosomal protein L11, N-terminal domain DK41_RS07635 PF07690 Major Facilitator Superfamily DK41_RS07640 PF07687 Peptidase dimerisation domain DK41_RS07640 PF01546 Peptidase family M20/M25/M40 DK41_RS07645 PF03466 LysR substrate binding domain DK41_RS07645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK41_RS07655 PF00425 chorismate binding enzyme DK41_RS07655 PF04715 Anthranilate synthase component I, N terminal region DK41_RS07660 PF17854 FtsK alpha domain DK41_RS07660 PF09397 Ftsk gamma domain DK41_RS07660 PF01580 FtsK/SpoIIIE family DK41_RS07665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK41_RS07670 PF00950 ABC 3 transport family DK41_RS07675 PF00005 ABC transporter DK41_RS07680 PF01297 Zinc-uptake complex component A periplasmic DK41_RS07690 PF01048 Phosphorylase superfamily DK41_RS07700 PF00293 NUDIX domain DK41_RS07705 PF14602 Hexapeptide repeat of succinyl-transferase DK41_RS07705 PF12804 MobA-like NTP transferase domain DK41_RS07705 PF00132 Bacterial transferase hexapeptide (six repeats) DK41_RS07725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK41_RS07725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK41_RS07790 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS07795 PF05525 Branched-chain amino acid transport protein DK41_RS07800 PF01588 Putative tRNA binding domain DK41_RS07800 PF09334 tRNA synthetases class I (M) DK41_RS07805 PF09313 Domain of unknown function (DUF1971) DK41_RS07805 PF03848 Tellurite resistance protein TehB DK41_RS07820 PF02378 Phosphotransferase system, EIIC DK41_RS07830 PF03372 Endonuclease/Exonuclease/phosphatase family DK41_RS07840 PF03960 ArsC family DK41_RS07845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DK41_RS07845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DK41_RS07850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK41_RS07850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK41_RS07860 PF00266 Aminotransferase class-V DK41_RS07865 PF03932 CutC family DK41_RS07870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS07880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DK41_RS07885 PF06156 Initiation control protein YabA DK41_RS07890 PF09115 DNA polymerase III, delta subunit, C terminal DK41_RS07895 PF02223 Thymidylate kinase DK41_RS07900 PF00571 CBS domain DK41_RS07905 PF00005 ABC transporter DK41_RS07910 PF12399 Branched-chain amino acid ATP-binding cassette transporter DK41_RS07910 PF00005 ABC transporter DK41_RS07915 PF11862 Domain of unknown function (DUF3382) DK41_RS07915 PF02653 Branched-chain amino acid transport system / permease component DK41_RS07920 PF02653 Branched-chain amino acid transport system / permease component DK41_RS07925 PF13458 Periplasmic binding protein DK41_RS07930 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DK41_RS07935 PF00574 Clp protease DK41_RS07945 PF00155 Aminotransferase class I and II DK41_RS07950 PF00588 SpoU rRNA Methylase family DK41_RS07955 PF13520 Amino acid permease DK41_RS07960 PF02254 TrkA-N domain DK41_RS07960 PF02080 TrkA-C domain DK41_RS07965 PF02386 Cation transport protein DK41_RS07970 PF01809 Putative membrane protein insertion efficiency factor DK41_RS07975 PF00849 RNA pseudouridylate synthase DK41_RS07975 PF01479 S4 domain DK41_RS07980 PF04079 Segregation and condensation complex subunit ScpB DK41_RS07985 PF02616 Segregation and condensation protein ScpA DK41_RS07990 PF00589 Phage integrase family DK41_RS08005 PF01725 Ham1 family DK41_RS08010 PF01177 Asp/Glu/Hydantoin racemase DK41_RS08015 PF03672 Uncharacterised protein family (UPF0154) DK41_RS08025 PF02829 3H domain DK41_RS08025 PF08279 HTH domain DK41_RS08030 PF01027 Inhibitor of apoptosis-promoting Bax1 DK41_RS08040 PF00588 SpoU rRNA Methylase family DK41_RS08040 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK41_RS08045 PF00708 Acylphosphatase DK41_RS08050 PF02096 60Kd inner membrane protein DK41_RS08060 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS08065 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK41_RS08070 PF01425 Amidase DK41_RS08075 PF01272 Transcription elongation factor, GreA/GreB, C-term DK41_RS08075 PF03449 Transcription elongation factor, N-terminal DK41_RS08080 PF02618 YceG-like family DK41_RS08090 PF02875 Mur ligase family, glutamate ligase domain DK41_RS08090 PF08245 Mur ligase middle domain DK41_RS08090 PF01225 Mur ligase family, catalytic domain DK41_RS08100 PF00271 Helicase conserved C-terminal domain DK41_RS08100 PF00176 SNF2 family N-terminal domain DK41_RS08100 PF04434 SWIM zinc finger DK41_RS08105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DK41_RS08105 PF01926 50S ribosome-binding GTPase DK41_RS08110 PF07319 Primosomal protein DnaI N-terminus DK41_RS08110 PF01695 IstB-like ATP binding protein DK41_RS08120 PF03477 ATP cone domain DK41_RS08125 PF18719 ArlS sensor domain DK41_RS08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS08125 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS08130 PF00072 Response regulator receiver domain DK41_RS08130 PF00486 Transcriptional regulatory protein, C terminal DK41_RS08140 PF01435 Peptidase family M48 DK41_RS08145 PF04011 LemA family DK41_RS08150 PF02527 rRNA small subunit methyltransferase G DK41_RS08155 PF02386 Cation transport protein DK41_RS08160 PF02254 TrkA-N domain DK41_RS08160 PF02080 TrkA-C domain DK41_RS08170 PF12558 ATP-binding cassette cobalt transporter DK41_RS08170 PF00005 ABC transporter DK41_RS08175 PF07155 ECF-type riboflavin transporter, S component DK41_RS08180 PF00375 Sodium:dicarboxylate symporter family DK41_RS08185 PF05525 Branched-chain amino acid transport protein DK41_RS08190 PF08240 Alcohol dehydrogenase GroES-like domain DK41_RS08190 PF13823 Alcohol dehydrogenase GroES-associated DK41_RS08190 PF00107 Zinc-binding dehydrogenase DK41_RS08200 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS08205 PF09383 NIL domain DK41_RS08205 PF00005 ABC transporter DK41_RS08210 PF01546 Peptidase family M20/M25/M40 DK41_RS08210 PF07687 Peptidase dimerisation domain DK41_RS08215 PF03180 NLPA lipoprotein DK41_RS08220 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK41_RS08225 PF07722 Peptidase C26 DK41_RS08230 PF01709 Transcriptional regulator DK41_RS08235 PF02733 Dak1 domain DK41_RS08240 PF00440 Bacterial regulatory proteins, tetR family DK41_RS08240 PF14278 Transcriptional regulator C-terminal region DK41_RS08245 PF02733 Dak1 domain DK41_RS08250 PF02734 DAK2 domain DK41_RS08255 PF03610 PTS system fructose IIA component DK41_RS08260 PF00230 Major intrinsic protein DK41_RS08270 PF13411 MerR HTH family regulatory protein DK41_RS08270 PF07739 TipAS antibiotic-recognition domain DK41_RS08275 PF05636 HIGH Nucleotidyl Transferase DK41_RS08285 PF13649 Methyltransferase domain DK41_RS08300 PF01966 HD domain DK41_RS08305 PF01467 Cytidylyltransferase-like DK41_RS08310 PF01985 CRS1 / YhbY (CRM) domain DK41_RS08315 PF01926 50S ribosome-binding GTPase DK41_RS08330 PF02934 GatB/GatE catalytic domain DK41_RS08330 PF02637 GatB domain DK41_RS08335 PF01425 Amidase DK41_RS08340 PF02686 Glu-tRNAGln amidotransferase C subunit DK41_RS08345 PF00391 PEP-utilising enzyme, mobile domain DK41_RS08345 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DK41_RS08345 PF02896 PEP-utilising enzyme, TIM barrel domain DK41_RS08350 PF03618 Kinase/pyrophosphorylase DK41_RS08355 PF08279 HTH domain DK41_RS08355 PF00571 CBS domain DK41_RS08360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DK41_RS08360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DK41_RS08360 PF00378 Enoyl-CoA hydratase/isomerase DK41_RS08365 PF00857 Isochorismatase family DK41_RS08370 PF06018 CodY GAF-like domain DK41_RS08370 PF08222 CodY helix-turn-helix domain DK41_RS08375 PF00155 Aminotransferase class I and II DK41_RS08380 PF00582 Universal stress protein family DK41_RS08390 PF00710 Asparaginase, N-terminal DK41_RS08390 PF17763 Glutaminase/Asparaginase C-terminal domain DK41_RS08395 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DK41_RS08395 PF08501 Shikimate dehydrogenase substrate binding domain DK41_RS08400 PF00248 Aldo/keto reductase family DK41_RS08405 PF00270 DEAD/DEAH box helicase DK41_RS08405 PF17191 RecG wedge domain DK41_RS08405 PF00271 Helicase conserved C-terminal domain DK41_RS08410 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK41_RS08410 PF05257 CHAP domain DK41_RS08415 PF01168 Alanine racemase, N-terminal domain DK41_RS08415 PF00842 Alanine racemase, C-terminal domain DK41_RS08420 PF01648 4'-phosphopantetheinyl transferase superfamily DK41_RS08425 PF00793 DAHP synthetase I family DK41_RS08430 PF02810 SEC-C motif DK41_RS08430 PF07517 SecA DEAD-like domain DK41_RS08430 PF01043 SecA preprotein cross-linking domain DK41_RS08430 PF07516 SecA Wing and Scaffold domain DK41_RS08435 PF13808 DDE_Tnp_1-associated DK41_RS08435 PF01609 Transposase DDE domain DK41_RS08440 PF01238 Phosphomannose isomerase type I DK41_RS08445 PF00480 ROK family DK41_RS08450 PF00367 phosphotransferase system, EIIB DK41_RS08450 PF02378 Phosphotransferase system, EIIC DK41_RS08450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK41_RS08455 PF08244 Glycosyl hydrolases family 32 C terminal DK41_RS08455 PF00251 Glycosyl hydrolases family 32 N-terminal domain DK41_RS08460 PF00356 Bacterial regulatory proteins, lacI family DK41_RS08465 PF01029 NusB family DK41_RS08470 PF03780 Asp23 family, cell envelope-related function DK41_RS08475 PF09285 Elongation factor P, C-terminal DK41_RS08475 PF08207 Elongation factor P (EF-P) KOW-like domain DK41_RS08475 PF01132 Elongation factor P (EF-P) OB domain DK41_RS08480 PF00005 ABC transporter DK41_RS08480 PF00664 ABC transporter transmembrane region DK41_RS08485 PF00664 ABC transporter transmembrane region DK41_RS08485 PF00005 ABC transporter DK41_RS08510 PF00501 AMP-binding enzyme DK41_RS08510 PF13193 AMP-binding enzyme C-terminal domain DK41_RS08515 PF13193 AMP-binding enzyme C-terminal domain DK41_RS08515 PF00501 AMP-binding enzyme DK41_RS08525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK41_RS08530 PF01321 Creatinase/Prolidase N-terminal domain DK41_RS08530 PF00557 Metallopeptidase family M24 DK41_RS08540 PF07690 Major Facilitator Superfamily DK41_RS08545 PF17755 UvrA DNA-binding domain DK41_RS08545 PF17760 UvrA interaction domain DK41_RS08545 PF00005 ABC transporter DK41_RS08560 PF01084 Ribosomal protein S18 DK41_RS08565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS08570 PF00436 Single-strand binding protein family DK41_RS08575 PF01250 Ribosomal protein S6 DK41_RS08580 PF14815 NUDIX domain DK41_RS08580 PF00730 HhH-GPD superfamily base excision DNA repair protein DK41_RS08585 PF01381 Helix-turn-helix DK41_RS08590 PF00085 Thioredoxin DK41_RS08600 PF00488 MutS domain V DK41_RS08600 PF01713 Smr domain DK41_RS08615 PF11858 Domain of unknown function (DUF3378) DK41_RS08615 PF01351 Ribonuclease HII DK41_RS08620 PF10502 Signal peptidase, peptidase S26 DK41_RS08625 PF14490 Helix-hairpin-helix containing domain DK41_RS08625 PF13538 UvrD-like helicase C-terminal domain DK41_RS08625 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DK41_RS08640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS08645 PF00817 impB/mucB/samB family DK41_RS08645 PF11799 impB/mucB/samB family C-terminal domain DK41_RS08645 PF11798 IMS family HHH motif DK41_RS08650 PF02901 Pyruvate formate lyase-like DK41_RS08650 PF01228 Glycine radical DK41_RS08655 PF01243 Pyridoxamine 5'-phosphate oxidase DK41_RS08660 PF00144 Beta-lactamase DK41_RS08675 PF00230 Major intrinsic protein DK41_RS08685 PF07690 Major Facilitator Superfamily DK41_RS08690 PF13545 Crp-like helix-turn-helix domain DK41_RS08695 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal DK41_RS08695 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DK41_RS08695 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DK41_RS08705 PF00348 Polyprenyl synthetase DK41_RS08710 PF00005 ABC transporter DK41_RS08710 PF00664 ABC transporter transmembrane region DK41_RS08715 PF00664 ABC transporter transmembrane region DK41_RS08715 PF00005 ABC transporter DK41_RS08720 PF02322 Cytochrome bd terminal oxidase subunit II DK41_RS08725 PF01654 Cytochrome bd terminal oxidase subunit I DK41_RS08730 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS08765 PF11922 Domain of unknown function (DUF3440) DK41_RS08765 PF01507 Phosphoadenosine phosphosulfate reductase family DK41_RS08770 PF02195 ParB-like nuclease domain DK41_RS09080 PF14659 Phage integrase, N-terminal SAM-like domain DK41_RS09080 PF00589 Phage integrase family DK41_RS09085 PF02575 YbaB/EbfC DNA-binding family DK41_RS09095 PF07739 TipAS antibiotic-recognition domain DK41_RS09095 PF13411 MerR HTH family regulatory protein DK41_RS09105 PF08279 HTH domain DK41_RS09105 PF04394 Protein of unknown function, DUF536 DK41_RS09120 PF00253 Ribosomal protein S14p/S29e DK41_RS09130 PF00814 Glycoprotease family DK41_RS09135 PF00583 Acetyltransferase (GNAT) family DK41_RS09140 PF00814 Glycoprotease family DK41_RS09145 PF07288 Protein of unknown function (DUF1447) DK41_RS09150 PF17770 Ribonuclease J C-terminal domain DK41_RS09150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK41_RS09150 PF00753 Metallo-beta-lactamase superfamily DK41_RS09155 PF05257 CHAP domain DK41_RS09155 PF01476 LysM domain DK41_RS09160 PF00120 Glutamine synthetase, catalytic domain DK41_RS09160 PF03951 Glutamine synthetase, beta-Grasp domain DK41_RS09165 PF13411 MerR HTH family regulatory protein DK41_RS09180 PF00162 Phosphoglycerate kinase DK41_RS09185 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DK41_RS09190 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DK41_RS09190 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DK41_RS09195 PF14492 Elongation Factor G, domain II DK41_RS09195 PF00679 Elongation factor G C-terminus DK41_RS09195 PF03144 Elongation factor Tu domain 2 DK41_RS09195 PF03764 Elongation factor G, domain IV DK41_RS09195 PF00009 Elongation factor Tu GTP binding domain DK41_RS09200 PF00177 Ribosomal protein S7p/S5e DK41_RS09205 PF00164 Ribosomal protein S12/S23 DK41_RS09210 PF09182 Bacterial purine repressor, N-terminal DK41_RS09210 PF00156 Phosphoribosyl transferase domain DK41_RS09215 PF01966 HD domain DK41_RS09215 PF01336 OB-fold nucleic acid binding domain DK41_RS09220 PF02646 RmuC family DK41_RS09230 PF00834 Ribulose-phosphate 3 epimerase family DK41_RS09235 PF16745 RsgA N-terminal domain DK41_RS09235 PF03193 RsgA GTPase DK41_RS09240 PF08241 Methyltransferase domain DK41_RS09245 PF00398 Ribosomal RNA adenine dimethylase DK41_RS09255 PF13331 Domain of unknown function (DUF4093) DK41_RS09260 PF01026 TatD related DNase DK41_RS09285 PF04914 DltD protein DK41_RS09290 PF00550 Phosphopantetheine attachment site DK41_RS09295 PF03062 MBOAT, membrane-bound O-acyltransferase family DK41_RS09300 PF13193 AMP-binding enzyme C-terminal domain DK41_RS09300 PF00501 AMP-binding enzyme DK41_RS09310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS09310 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS09315 PF00486 Transcriptional regulatory protein, C terminal DK41_RS09315 PF00072 Response regulator receiver domain DK41_RS09320 PF13808 DDE_Tnp_1-associated DK41_RS09320 PF01609 Transposase DDE domain DK41_RS09325 PF00468 Ribosomal protein L34 DK41_RS09330 PF07670 Nucleoside recognition DK41_RS09335 PF00589 Phage integrase family DK41_RS09335 PF02920 DNA binding domain of tn916 integrase DK41_RS09340 PF09035 Excisionase from transposon Tn916 DK41_RS09360 PF13700 Domain of unknown function (DUF4158) DK41_RS09360 PF01526 Tn3 transposase DDE domain DK41_RS09365 PF00239 Resolvase, N terminal domain DK41_RS09365 PF02796 Helix-turn-helix domain of resolvase DK41_RS09370 PF00398 Ribosomal RNA adenine dimethylase DK41_RS09375 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) DK41_RS09385 PF03764 Elongation factor G, domain IV DK41_RS09385 PF14492 Elongation Factor G, domain II DK41_RS09385 PF00679 Elongation factor G C-terminus DK41_RS09385 PF00009 Elongation factor Tu GTP binding domain DK41_RS09395 PF00877 NlpC/P60 family DK41_RS09425 PF02486 Replication initiation factor DK41_RS09425 PF18106 Rolling Circle replication initiation protein N-terminal domain DK41_RS09445 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS09450 PF00571 CBS domain DK41_RS09450 PF00005 ABC transporter DK41_RS09455 PF09364 XFP N-terminal domain DK41_RS09455 PF09363 XFP C-terminal domain DK41_RS09455 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DK41_RS09475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DK41_RS09475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DK41_RS09485 PF03611 PTS system sugar-specific permease component DK41_RS09490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK41_RS09490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK41_RS09500 PF00356 Bacterial regulatory proteins, lacI family DK41_RS09505 PF00923 Transaldolase/Fructose-6-phosphate aldolase DK41_RS09510 PF00596 Class II Aldolase and Adducin N-terminal domain DK41_RS09515 PF01261 Xylose isomerase-like TIM barrel DK41_RS09520 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK41_RS09525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK41_RS09530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK41_RS09535 PF03611 PTS system sugar-specific permease component DK41_RS09555 PF00709 Adenylosuccinate synthetase DK41_RS09570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK41_RS09570 PF04262 Glutamate-cysteine ligase DK41_RS09570 PF18419 ATP-grasp-like domain DK41_RS09585 PF01430 Hsp33 protein DK41_RS09590 PF01207 Dihydrouridine synthase (Dus) DK41_RS09595 PF01712 Deoxynucleoside kinase DK41_RS09605 PF02861 Clp amino terminal domain, pathogenicity island component DK41_RS09605 PF10431 C-terminal, D2-small domain, of ClpB protein DK41_RS09605 PF07724 AAA domain (Cdc48 subfamily) DK41_RS09605 PF17871 AAA lid domain DK41_RS09605 PF00004 ATPase family associated with various cellular activities (AAA) DK41_RS09610 PF05848 CtsR N-terminal HTH domain DK41_RS09610 PF17727 CtsR C-terminal dimerization domain DK41_RS09620 PF00889 Elongation factor TS DK41_RS09625 PF00318 Ribosomal protein S2 DK41_RS09630 PF00578 AhpC/TSA family DK41_RS09635 PF13192 Thioredoxin domain DK41_RS09635 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK41_RS09660 PF02661 Fic/DOC family DK41_RS09660 PF12728 Helix-turn-helix domain DK41_RS09690 PF18106 Rolling Circle replication initiation protein N-terminal domain DK41_RS09690 PF02486 Replication initiation factor DK41_RS09700 PF02899 Phage integrase, N-terminal SAM-like domain DK41_RS09700 PF00589 Phage integrase family DK41_RS09715 PF02016 LD-carboxypeptidase N-terminal domain DK41_RS09715 PF17676 LD-carboxypeptidase C-terminal domain DK41_RS09720 PF01431 Peptidase family M13 DK41_RS09720 PF05649 Peptidase family M13 DK41_RS09725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK41_RS09725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK41_RS09740 PF01327 Polypeptide deformylase DK41_RS09745 PF00356 Bacterial regulatory proteins, lacI family DK41_RS09755 PF03613 PTS system mannose/fructose/sorbose family IID component DK41_RS09760 PF03609 PTS system sorbose-specific iic component DK41_RS09765 PF03830 PTS system sorbose subfamily IIB component DK41_RS09770 PF07470 Glycosyl Hydrolase Family 88 DK41_RS09775 PF03610 PTS system fructose IIA component DK41_RS09775 PF03830 PTS system sorbose subfamily IIB component DK41_RS09815 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK41_RS09815 PF00929 Exonuclease DK41_RS09815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK41_RS09815 PF14579 Helix-hairpin-helix motif DK41_RS09815 PF02811 PHP domain DK41_RS09815 PF14480 DNA polymerase III polC-type N-terminus I DK41_RS09815 PF11490 DNA polymerase III polC-type N-terminus II DK41_RS09820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DK41_RS09820 PF01476 LysM domain DK41_RS09825 PF03129 Anticodon binding domain DK41_RS09825 PF04073 Aminoacyl-tRNA editing domain DK41_RS09825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK41_RS09830 PF13180 PDZ domain DK41_RS09830 PF02163 Peptidase family M50 DK41_RS09840 PF01255 Putative undecaprenyl diphosphate synthase DK41_RS09845 PF02699 Preprotein translocase subunit DK41_RS09855 PF03949 Malic enzyme, NAD binding domain DK41_RS09855 PF00390 Malic enzyme, N-terminal domain DK41_RS09860 PF03390 2-hydroxycarboxylate transporter family DK41_RS09865 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DK41_RS09865 PF17203 Single cache domain 3 DK41_RS09865 PF00989 PAS fold DK41_RS09865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS09870 PF00072 Response regulator receiver domain DK41_RS09875 PF16363 GDP-mannose 4,6 dehydratase DK41_RS09880 PF00128 Alpha amylase, catalytic domain DK41_RS09885 PF17912 MalK OB fold domain DK41_RS09885 PF00005 ABC transporter DK41_RS09885 PF03459 TOBE domain DK41_RS09890 PF13556 PucR C-terminal helix-turn-helix domain DK41_RS09895 PF01263 Aldose 1-epimerase DK41_RS09900 PF01791 DeoC/LacD family aldolase DK41_RS09905 PF00294 pfkB family carbohydrate kinase DK41_RS09910 PF02502 Ribose/Galactose Isomerase DK41_RS09915 PF02502 Ribose/Galactose Isomerase DK41_RS09920 PF02973 Sialidase, N-terminal domain DK41_RS09920 PF13088 BNR repeat-like domain DK41_RS09920 PF04650 YSIRK type signal peptide DK41_RS09940 PF08220 DeoR-like helix-turn-helix domain DK41_RS09940 PF00455 DeoR C terminal sensor domain DK41_RS09960 PF13276 HTH-like domain DK41_RS09960 PF00665 Integrase core domain DK41_RS09960 PF13333 Integrase core domain DK41_RS09965 PF02580 D-Tyr-tRNA(Tyr) deacylase DK41_RS09970 PF02824 TGS domain DK41_RS09970 PF04607 Region found in RelA / SpoT proteins DK41_RS09970 PF13291 ACT domain DK41_RS09975 PF02872 5'-nucleotidase, C-terminal domain DK41_RS09975 PF00149 Calcineurin-like phosphoesterase DK41_RS09980 PF07972 NrdI Flavodoxin like DK41_RS09985 PF05343 M42 glutamyl aminopeptidase DK41_RS10005 PF12833 Helix-turn-helix domain DK41_RS10005 PF00072 Response regulator receiver domain DK41_RS10010 PF06580 Histidine kinase DK41_RS10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS10015 PF03613 PTS system mannose/fructose/sorbose family IID component DK41_RS10020 PF03609 PTS system sorbose-specific iic component DK41_RS10025 PF03830 PTS system sorbose subfamily IIB component DK41_RS10035 PF01757 Acyltransferase family DK41_RS10035 PF00842 Alanine racemase, C-terminal domain DK41_RS10035 PF01168 Alanine racemase, N-terminal domain DK41_RS10045 PF13732 Domain of unknown function (DUF4162) DK41_RS10045 PF00005 ABC transporter DK41_RS10055 PF04397 LytTr DNA-binding domain DK41_RS10055 PF00072 Response regulator receiver domain DK41_RS10060 PF03372 Endonuclease/Exonuclease/phosphatase family DK41_RS10065 PF00367 phosphotransferase system, EIIB DK41_RS10065 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK41_RS10065 PF02378 Phosphotransferase system, EIIC DK41_RS10070 PF16736 Single Cache-like DK41_RS10070 PF00989 PAS fold DK41_RS10070 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS10070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS10075 PF00072 Response regulator receiver domain DK41_RS10075 PF00486 Transcriptional regulatory protein, C terminal DK41_RS10080 PF01895 PhoU domain DK41_RS10085 PF00005 ABC transporter DK41_RS10090 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS10095 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS10100 PF12849 PBP superfamily domain DK41_RS10110 PF04452 RNA methyltransferase DK41_RS10125 PF00293 NUDIX domain DK41_RS10145 PF00583 Acetyltransferase (GNAT) family DK41_RS10150 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK41_RS10150 PF16193 AAA C-terminal domain DK41_RS10150 PF12002 MgsA AAA+ ATPase C terminal DK41_RS10190 PF04439 Streptomycin adenylyltransferase DK41_RS10220 PF13732 Domain of unknown function (DUF4162) DK41_RS10220 PF00005 ABC transporter DK41_RS10230 PF01381 Helix-turn-helix DK41_RS10245 PF03819 MazG nucleotide pyrophosphohydrolase domain DK41_RS10250 PF03641 Possible lysine decarboxylase DK41_RS10260 PF00581 Rhodanese-like domain DK41_RS10265 PF07373 CAMP factor (Cfa) DK41_RS10275 PF00465 Iron-containing alcohol dehydrogenase DK41_RS10285 PF13333 Integrase core domain DK41_RS10285 PF00665 Integrase core domain DK41_RS10285 PF13276 HTH-like domain DK41_RS10295 PF02574 Homocysteine S-methyltransferase DK41_RS10295 PF02219 Methylenetetrahydrofolate reductase DK41_RS10300 PF01717 Cobalamin-independent synthase, Catalytic domain DK41_RS10300 PF08267 Cobalamin-independent synthase, N-terminal domain DK41_RS10310 PF03591 AzlC protein DK41_RS10320 PF00072 Response regulator receiver domain DK41_RS10320 PF00486 Transcriptional regulatory protein, C terminal DK41_RS10325 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS10325 PF00672 HAMP domain DK41_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS10335 PF08264 Anticodon-binding domain of tRNA DK41_RS10335 PF09334 tRNA synthetases class I (M) DK41_RS10335 PF13603 Leucyl-tRNA synthetase, Domain 2 DK41_RS10335 PF00133 tRNA synthetases class I (I, L, M and V) DK41_RS10345 PF13808 DDE_Tnp_1-associated DK41_RS10345 PF01609 Transposase DDE domain DK41_RS10350 PF07690 Major Facilitator Superfamily DK41_RS10355 PF01734 Patatin-like phospholipase DK41_RS10360 PF02357 Transcription termination factor nusG DK41_RS10360 PF00467 KOW motif DK41_RS10365 PF17573 GA-like domain DK41_RS10365 PF00746 LPXTG cell wall anchor motif DK41_RS10365 PF01378 B domain DK41_RS10375 PF00905 Penicillin binding protein transpeptidase domain DK41_RS10375 PF00912 Transglycosylase DK41_RS10380 PF00849 RNA pseudouridylate synthase DK41_RS10380 PF01479 S4 domain DK41_RS10390 PF01676 Metalloenzyme superfamily DK41_RS10395 PF01791 DeoC/LacD family aldolase DK41_RS10400 PF07662 Na+ dependent nucleoside transporter C-terminus DK41_RS10400 PF07670 Nucleoside recognition DK41_RS10400 PF01773 Na+ dependent nucleoside transporter N-terminus DK41_RS10405 PF01048 Phosphorylase superfamily DK41_RS10420 PF00118 TCP-1/cpn60 chaperonin family DK41_RS10425 PF00166 Chaperonin 10 Kd subunit DK41_RS10430 PF00005 ABC transporter DK41_RS10435 PF02653 Branched-chain amino acid transport system / permease component DK41_RS10450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK41_RS10455 PF03883 Peroxide stress protein YaaA DK41_RS10470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK41_RS10480 PF03477 ATP cone domain DK41_RS10480 PF13597 Anaerobic ribonucleoside-triphosphate reductase DK41_RS10495 PF06949 Protein of unknown function (DUF1292) DK41_RS10500 PF03652 Holliday junction resolvase DK41_RS10505 PF06135 IreB regulatory phosphoprotein DK41_RS10510 PF03960 ArsC family DK41_RS10515 PF00154 recA bacterial DNA recombination protein DK41_RS10520 PF02464 Competence-damaged protein DK41_RS10520 PF18146 Damage-inducible protein CinA KH domain DK41_RS10520 PF00994 Probable molybdopterin binding domain DK41_RS10525 PF03352 Methyladenine glycosylase DK41_RS10530 PF01330 RuvA N terminal domain DK41_RS10530 PF07499 RuvA, C-terminal domain DK41_RS10540 PF01119 DNA mismatch repair protein, C-terminal domain DK41_RS10540 PF08676 MutL C terminal dimerisation domain DK41_RS10545 PF00313 'Cold-shock' DNA-binding domain DK41_RS10550 PF05188 MutS domain II DK41_RS10550 PF05192 MutS domain III DK41_RS10550 PF00488 MutS domain V DK41_RS10550 PF05190 MutS family domain IV DK41_RS10550 PF01624 MutS domain I DK41_RS10555 PF01316 Arginine repressor, DNA binding domain DK41_RS10555 PF02863 Arginine repressor, C-terminal domain DK41_RS10560 PF03485 Arginyl tRNA synthetase N terminal domain DK41_RS10560 PF00750 tRNA synthetases class I (R) DK41_RS10560 PF05746 DALR anticodon binding domain DK41_RS10570 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK41_RS10570 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK41_RS10575 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK41_RS10575 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK41_RS10580 PF00152 tRNA synthetases class II (D, K and N) DK41_RS10580 PF02938 GAD domain DK41_RS10580 PF01336 OB-fold nucleic acid binding domain DK41_RS10585 PF13393 Histidyl-tRNA synthetase DK41_RS10585 PF03129 Anticodon binding domain DK41_RS10590 PF01783 Ribosomal L32p protein family DK41_RS10595 PF00471 Ribosomal protein L33 DK41_RS10605 PF02899 Phage integrase, N-terminal SAM-like domain DK41_RS10605 PF00589 Phage integrase family DK41_RS10615 PF02486 Replication initiation factor DK41_RS10615 PF18106 Rolling Circle replication initiation protein N-terminal domain DK41_RS10645 PF02661 Fic/DOC family DK41_RS10645 PF12728 Helix-turn-helix domain DK41_RS10660 PF01022 Bacterial regulatory protein, arsR family DK41_RS10670 PF00665 Integrase core domain DK41_RS10670 PF13333 Integrase core domain DK41_RS10670 PF13276 HTH-like domain DK41_RS10710 PF02899 Phage integrase, N-terminal SAM-like domain DK41_RS10710 PF00589 Phage integrase family DK41_RS10720 PF00486 Transcriptional regulatory protein, C terminal DK41_RS10720 PF00072 Response regulator receiver domain DK41_RS10725 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS10725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS10730 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS10735 PF03606 C4-dicarboxylate anaerobic carrier DK41_RS10740 PF00696 Amino acid kinase family DK41_RS10745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK41_RS10745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK41_RS10750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK41_RS10750 PF00512 His Kinase A (phospho-acceptor) domain DK41_RS10750 PF00989 PAS fold DK41_RS10755 PF08664 YcbB domain DK41_RS10755 PF00072 Response regulator receiver domain DK41_RS10760 PF00005 ABC transporter DK41_RS10760 PF00571 CBS domain DK41_RS10765 PF00528 Binding-protein-dependent transport system inner membrane component DK41_RS10770 PF09924 Uncharacterised conserved protein (DUF2156) DK41_RS10770 PF03706 Lysylphosphatidylglycerol synthase TM region DK41_RS10775 PF00561 alpha/beta hydrolase fold DK41_RS10780 PF06993 Protein of unknown function (DUF1304) DK41_RS10785 PF01061 ABC-2 type transporter DK41_RS10900 PF00589 Phage integrase family DK41_RS10900 PF14659 Phage integrase, N-terminal SAM-like domain DK41_RS10905 PF01479 S4 domain DK41_RS10905 PF00163 Ribosomal protein S4/S9 N-terminal domain DK41_RS10915 PF03796 DnaB-like helicase C terminal domain DK41_RS10915 PF00772 DnaB-like helicase N terminal domain DK41_RS10920 PF03948 Ribosomal protein L9, C-terminal domain DK41_RS10920 PF01281 Ribosomal protein L9, N-terminal domain DK41_RS10925 PF02272 DHHA1 domain DK41_RS10925 PF01368 DHH family DK41_RS10930 PF13932 GidA associated domain DK41_RS10930 PF01134 Glucose inhibited division protein A DK41_RS10935 PF01914 MarC family integral membrane protein DK41_RS10945 PF01842 ACT domain DK41_RS10945 PF03315 Serine dehydratase beta chain DK41_RS10950 PF03313 Serine dehydratase alpha chain DK41_RS10960 PF06737 Transglycosylase-like domain DK41_RS10965 PF01476 LysM domain DK41_RS10965 PF05257 CHAP domain DK41_RS10970 PF02361 Cobalt transport protein DK41_RS10975 PF00005 ABC transporter DK41_RS10980 PF00005 ABC transporter DK41_RS10985 PF01066 CDP-alcohol phosphatidyltransferase DK41_RS10990 PF00675 Insulinase (Peptidase family M16) DK41_RS10990 PF05193 Peptidase M16 inactive domain DK41_RS10995 PF05193 Peptidase M16 inactive domain DK41_RS11005 PF02463 RecF/RecN/SMC N terminal domain DK41_RS11015 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK41_RS11020 PF06800 Sugar transport protein DK41_RS11030 PF00571 CBS domain DK41_RS11030 PF00478 IMP dehydrogenase / GMP reductase domain DK41_RS11035 PF01316 Arginine repressor, DNA binding domain DK41_RS11035 PF02863 Arginine repressor, C-terminal domain DK41_RS11040 PF00027 Cyclic nucleotide-binding domain DK41_RS11040 PF13545 Crp-like helix-turn-helix domain DK41_RS11055 PF13673 Acetyltransferase (GNAT) domain DK41_RS11060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK41_RS11060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK41_RS11065 PF13520 Amino acid permease DK41_RS11070 PF00696 Amino acid kinase family DK41_RS11080 PF00579 tRNA synthetases class I (W and Y) DK41_RS11090 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK41_RS11090 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK41_RS11095 PF00005 ABC transporter DK41_RS11095 PF12848 ABC transporter DK41_RS11100 PF09586 Bacterial membrane protein YfhO DK41_RS11120 PF02590 Predicted SPOUT methyltransferase DK41_RS11125 PF13180 PDZ domain DK41_RS11130 PF02195 ParB-like nuclease domain DK41_RS11130 PF17762 HTH domain found in ParB protein