locus-tag class description AMD29_RS00170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD29_RS00170 PF14572 Phosphoribosyl synthetase-associated domain AMD29_RS00175 PF00155 Aminotransferase class I and II AMD29_RS00180 PF02565 Recombination protein O C terminal AMD29_RS00180 PF11967 Recombination protein O N terminal AMD29_RS00190 PF02504 Fatty acid synthesis protein AMD29_RS00195 PF00550 Phosphopantetheine attachment site AMD29_RS00200 PF01259 SAICAR synthetase AMD29_RS00205 PF02769 AIR synthase related protein, C-terminal domain AMD29_RS00205 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD29_RS00205 PF00586 AIR synthase related protein, N-terminal domain AMD29_RS00210 PF00156 Phosphoribosyl transferase domain AMD29_RS00210 PF13537 Glutamine amidotransferase domain AMD29_RS00215 PF00586 AIR synthase related protein, N-terminal domain AMD29_RS00215 PF02769 AIR synthase related protein, C-terminal domain AMD29_RS00220 PF00551 Formyl transferase AMD29_RS00230 PF01808 AICARFT/IMPCHase bienzyme AMD29_RS00230 PF02142 MGS-like domain AMD29_RS00235 PF01476 LysM domain AMD29_RS00235 PF01551 Peptidase family M23 AMD29_RS00245 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AMD29_RS00255 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS00260 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS00275 PF00701 Dihydrodipicolinate synthetase family AMD29_RS00280 PF00480 ROK family AMD29_RS00285 PF05448 Acetyl xylan esterase (AXE1) AMD29_RS00295 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD29_RS00295 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD29_RS00295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD29_RS00300 PF00731 AIR carboxylase AMD29_RS00305 PF02222 ATP-grasp domain AMD29_RS00305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD29_RS00315 PF00206 Lyase AMD29_RS00315 PF10397 Adenylosuccinate lyase C-terminus AMD29_RS00325 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD29_RS00325 PF17864 RuvB AAA lid domain AMD29_RS00325 PF05491 RuvB C-terminal winged helix domain AMD29_RS00330 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD29_RS00340 PF01757 Acyltransferase family AMD29_RS00345 PF00465 Iron-containing alcohol dehydrogenase AMD29_RS00345 PF00171 Aldehyde dehydrogenase family AMD29_RS00350 PF00107 Zinc-binding dehydrogenase AMD29_RS00350 PF08240 Alcohol dehydrogenase GroES-like domain AMD29_RS00355 PF14821 Threonine synthase N terminus AMD29_RS00355 PF00291 Pyridoxal-phosphate dependent enzyme AMD29_RS00360 PF01554 MatE AMD29_RS00365 PF00338 Ribosomal protein S10p/S20e AMD29_RS00370 PF00297 Ribosomal protein L3 AMD29_RS00375 PF00573 Ribosomal protein L4/L1 family AMD29_RS00380 PF00276 Ribosomal protein L23 AMD29_RS00385 PF00181 Ribosomal Proteins L2, RNA binding domain AMD29_RS00385 PF03947 Ribosomal Proteins L2, C-terminal domain AMD29_RS00390 PF00203 Ribosomal protein S19 AMD29_RS00395 PF00237 Ribosomal protein L22p/L17e AMD29_RS00400 PF07650 KH domain AMD29_RS00400 PF00189 Ribosomal protein S3, C-terminal domain AMD29_RS00405 PF00252 Ribosomal protein L16p/L10e AMD29_RS00410 PF00831 Ribosomal L29 protein AMD29_RS00415 PF00366 Ribosomal protein S17 AMD29_RS00420 PF00238 Ribosomal protein L14p/L23e AMD29_RS00425 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD29_RS00425 PF00467 KOW motif AMD29_RS00430 PF00281 Ribosomal protein L5 AMD29_RS00430 PF00673 ribosomal L5P family C-terminus AMD29_RS00435 PF00253 Ribosomal protein S14p/S29e AMD29_RS00440 PF00410 Ribosomal protein S8 AMD29_RS00445 PF00347 Ribosomal protein L6 AMD29_RS00450 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD29_RS00455 PF03719 Ribosomal protein S5, C-terminal domain AMD29_RS00455 PF00333 Ribosomal protein S5, N-terminal domain AMD29_RS00460 PF00327 Ribosomal protein L30p/L7e AMD29_RS00465 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD29_RS00470 PF00344 SecY translocase AMD29_RS00480 PF01176 Translation initiation factor 1A / IF-1 AMD29_RS00485 PF00416 Ribosomal protein S13/S18 AMD29_RS00490 PF00411 Ribosomal protein S11 AMD29_RS00495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD29_RS00495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD29_RS00495 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD29_RS00500 PF01196 Ribosomal protein L17 AMD29_RS00610 PF11208 Protein of unknown function (DUF2992) AMD29_RS00645 PF08346 AntA/AntB antirepressor AMD29_RS00645 PF10548 P22AR C-terminal domain AMD29_RS00675 PF00271 Helicase conserved C-terminal domain AMD29_RS00675 PF04851 Type III restriction enzyme, res subunit AMD29_RS00675 PF12344 Ultra-violet resistance protein B AMD29_RS00675 PF17757 UvrB interaction domain AMD29_RS00675 PF02151 UvrB/uvrC motif AMD29_RS00760 PF04466 Phage terminase large subunit AMD29_RS00760 PF17288 Terminase RNAseH like domain AMD29_RS00890 PF02557 D-alanyl-D-alanine carboxypeptidase AMD29_RS00895 PF13457 GW (Gly-Tryp) dipeptide domain AMD29_RS00895 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD29_RS00900 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD29_RS00900 PF01628 HrcA protein C terminal domain AMD29_RS00905 PF01025 GrpE AMD29_RS00910 PF00012 Hsp70 protein AMD29_RS00915 PF00684 DnaJ central domain AMD29_RS00915 PF00226 DnaJ domain AMD29_RS00915 PF01556 DnaJ C terminal domain AMD29_RS00920 PF00155 Aminotransferase class I and II AMD29_RS00920 PF00392 Bacterial regulatory proteins, gntR family AMD29_RS00925 PF01416 tRNA pseudouridine synthase AMD29_RS00930 PF08543 Phosphomethylpyrimidine kinase AMD29_RS00935 PF07155 ECF-type riboflavin transporter, S component AMD29_RS00940 PF04260 Protein of unknown function (DUF436) AMD29_RS00945 PF00924 Mechanosensitive ion channel AMD29_RS00950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD29_RS00950 PF05697 Bacterial trigger factor protein (TF) AMD29_RS00950 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD29_RS00955 PF05066 HB1, ASXL, restriction endonuclease HTH domain AMD29_RS00960 PF06418 CTP synthase N-terminus AMD29_RS00960 PF00117 Glutamine amidotransferase class-I AMD29_RS00975 PF00692 dUTPase AMD29_RS00980 PF18073 Rubredoxin metal binding domain AMD29_RS00985 PF00484 Carbonic anhydrase AMD29_RS00990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS00990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD29_RS01000 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD29_RS01005 PF13407 Periplasmic binding protein domain AMD29_RS01010 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS01015 PF00005 ABC transporter AMD29_RS01020 PF05025 RbsD / FucU transport protein family AMD29_RS01025 PF00294 pfkB family carbohydrate kinase AMD29_RS01030 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS01035 PF02687 FtsX-like permease family AMD29_RS01040 PF00005 ABC transporter AMD29_RS01045 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS01045 PF00072 Response regulator receiver domain AMD29_RS01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS01050 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS01055 PF00764 Arginosuccinate synthase AMD29_RS01060 PF14698 Argininosuccinate lyase C-terminal AMD29_RS01060 PF00206 Lyase AMD29_RS01065 PF01116 Fructose-bisphosphate aldolase class-II AMD29_RS01070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD29_RS01070 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD29_RS01075 PF00830 Ribosomal L28 family AMD29_RS01080 PF03780 Asp23 family, cell envelope-related function AMD29_RS01085 PF02734 DAK2 domain AMD29_RS01085 PF13684 Dihydroxyacetone kinase family AMD29_RS01100 PF13936 Helix-turn-helix domain AMD29_RS01110 PF00746 LPXTG cell wall anchor motif AMD29_RS01110 PF04650 YSIRK type signal peptide AMD29_RS01110 PF05062 RICH domain AMD29_RS01110 PF16828 GAG-binding domain on surface antigen AMD29_RS01125 PF00005 ABC transporter AMD29_RS01130 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01140 PF02673 Bacitracin resistance protein BacA AMD29_RS01145 PF05389 Negative regulator of genetic competence (MecA) AMD29_RS01150 PF00953 Glycosyl transferase family 4 AMD29_RS01155 PF00005 ABC transporter AMD29_RS01160 PF01458 Uncharacterized protein family (UPF0051) AMD29_RS01165 PF00266 Aminotransferase class-V AMD29_RS01170 PF01592 NifU-like N terminal domain AMD29_RS01175 PF01458 Uncharacterized protein family (UPF0051) AMD29_RS01180 PF00768 D-alanyl-D-alanine carboxypeptidase AMD29_RS01180 PF07943 Penicillin-binding protein 5, C-terminal domain AMD29_RS01185 PF07943 Penicillin-binding protein 5, C-terminal domain AMD29_RS01185 PF00768 D-alanyl-D-alanine carboxypeptidase AMD29_RS01190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD29_RS01195 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01200 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD29_RS01200 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD29_RS01205 PF00005 ABC transporter AMD29_RS01210 PF00005 ABC transporter AMD29_RS01210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD29_RS01240 PF00288 GHMP kinases N terminal domain AMD29_RS01240 PF08544 GHMP kinases C terminal AMD29_RS01245 PF01047 MarR family AMD29_RS01250 PF00005 ABC transporter AMD29_RS01255 PF00950 ABC 3 transport family AMD29_RS01265 PF01479 S4 domain AMD29_RS01265 PF00579 tRNA synthetases class I (W and Y) AMD29_RS01270 PF00905 Penicillin binding protein transpeptidase domain AMD29_RS01270 PF00912 Transglycosylase AMD29_RS01275 PF04561 RNA polymerase Rpb2, domain 2 AMD29_RS01275 PF04565 RNA polymerase Rpb2, domain 3 AMD29_RS01275 PF00562 RNA polymerase Rpb2, domain 6 AMD29_RS01275 PF04560 RNA polymerase Rpb2, domain 7 AMD29_RS01275 PF10385 RNA polymerase beta subunit external 1 domain AMD29_RS01275 PF04563 RNA polymerase beta subunit AMD29_RS01280 PF04997 RNA polymerase Rpb1, domain 1 AMD29_RS01280 PF04983 RNA polymerase Rpb1, domain 3 AMD29_RS01280 PF00623 RNA polymerase Rpb1, domain 2 AMD29_RS01280 PF05000 RNA polymerase Rpb1, domain 4 AMD29_RS01280 PF04998 RNA polymerase Rpb1, domain 5 AMD29_RS01290 PF00437 Type II/IV secretion system protein AMD29_RS01295 PF00482 Type II secretion system (T2SS), protein F AMD29_RS01330 PF00871 Acetokinase family AMD29_RS01350 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD29_RS01350 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD29_RS01355 PF05343 M42 glutamyl aminopeptidase AMD29_RS01370 PF00085 Thioredoxin AMD29_RS01375 PF14794 Domain of unknown function (DUF4479) AMD29_RS01375 PF01588 Putative tRNA binding domain AMD29_RS01385 PF00436 Single-strand binding protein family AMD29_RS01390 PF13419 Haloacid dehalogenase-like hydrolase AMD29_RS01395 PF07694 5TMR of 5TMR-LYT AMD29_RS01395 PF06580 Histidine kinase AMD29_RS01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS01400 PF04397 LytTr DNA-binding domain AMD29_RS01400 PF00072 Response regulator receiver domain AMD29_RS01405 PF03788 LrgA family AMD29_RS01410 PF04172 LrgB-like family AMD29_RS01415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD29_RS01420 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01425 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD29_RS01425 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01430 PF00005 ABC transporter AMD29_RS01430 PF12558 ATP-binding cassette cobalt transporter AMD29_RS01435 PF00005 ABC transporter AMD29_RS01440 PF02378 Phosphotransferase system, EIIC AMD29_RS01440 PF00367 phosphotransferase system, EIIB AMD29_RS01445 PF16657 Maltogenic Amylase, C-terminal domain AMD29_RS01445 PF00128 Alpha amylase, catalytic domain AMD29_RS01450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS01455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS01460 PF03611 PTS system sugar-specific permease component AMD29_RS01465 PF00456 Transketolase, thiamine diphosphate binding domain AMD29_RS01470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD29_RS01470 PF02780 Transketolase, C-terminal domain AMD29_RS01470 PF02779 Transketolase, pyrimidine binding domain AMD29_RS01475 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD29_RS01475 PF00970 Oxidoreductase FAD-binding domain AMD29_RS01475 PF00175 Oxidoreductase NAD-binding domain AMD29_RS01480 PF00312 Ribosomal protein S15 AMD29_RS01485 PF00575 S1 RNA binding domain AMD29_RS01485 PF03725 3' exoribonuclease family, domain 2 AMD29_RS01485 PF01138 3' exoribonuclease family, domain 1 AMD29_RS01485 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD29_RS01485 PF00013 KH domain AMD29_RS01495 PF00132 Bacterial transferase hexapeptide (six repeats) AMD29_RS01495 PF06426 Serine acetyltransferase, N-terminal AMD29_RS01505 PF09190 DALR domain AMD29_RS01505 PF01406 tRNA synthetases class I (C) catalytic domain AMD29_RS01510 PF00636 Ribonuclease III domain AMD29_RS01515 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD29_RS01515 PF00588 SpoU rRNA Methylase family AMD29_RS01525 PF02645 Uncharacterised protein, DegV family COG1307 AMD29_RS01530 PF00572 Ribosomal protein L13 AMD29_RS01535 PF00380 Ribosomal protein S9/S16 AMD29_RS01540 PF00589 Phage integrase family AMD29_RS01540 PF02899 Phage integrase, N-terminal SAM-like domain AMD29_RS01575 PF02486 Replication initiation factor AMD29_RS01585 PF01076 Plasmid recombination enzyme AMD29_RS01605 PF06013 Proteins of 100 residues with WXG AMD29_RS01645 PF01381 Helix-turn-helix AMD29_RS01650 PF07690 Major Facilitator Superfamily AMD29_RS01655 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01660 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMD29_RS01665 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01670 PF00571 CBS domain AMD29_RS01670 PF00005 ABC transporter AMD29_RS01795 PF00958 GMP synthase C terminal domain AMD29_RS01795 PF03352 Methyladenine glycosylase AMD29_RS01795 PF13302 Acetyltransferase (GNAT) domain AMD29_RS01795 PF13673 Acetyltransferase (GNAT) domain AMD29_RS01795 PF00117 Glutamine amidotransferase class-I AMD29_RS01810 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AMD29_RS01820 PF00440 Bacterial regulatory proteins, tetR family AMD29_RS01830 PF00005 ABC transporter AMD29_RS01840 PF03551 Transcriptional regulator PadR-like family AMD29_RS01850 PF01979 Amidohydrolase family AMD29_RS01855 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AMD29_RS01860 PF02091 Glycyl-tRNA synthetase alpha subunit AMD29_RS01865 PF02525 Flavodoxin-like fold AMD29_RS01870 PF05746 DALR anticodon binding domain AMD29_RS01870 PF02092 Glycyl-tRNA synthetase beta subunit AMD29_RS01875 PF05979 Bacterial protein of unknown function (DUF896) AMD29_RS01885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD29_RS01885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD29_RS01890 PF01266 FAD dependent oxidoreductase AMD29_RS01890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD29_RS01895 PF00230 Major intrinsic protein AMD29_RS01900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD29_RS01900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS01910 PF02779 Transketolase, pyrimidine binding domain AMD29_RS01910 PF02780 Transketolase, C-terminal domain AMD29_RS01910 PF00456 Transketolase, thiamine diphosphate binding domain AMD29_RS01920 PF00005 ABC transporter AMD29_RS01930 PF02378 Phosphotransferase system, EIIC AMD29_RS01930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD29_RS01930 PF00367 phosphotransferase system, EIIB AMD29_RS01935 PF00696 Amino acid kinase family AMD29_RS01940 PF00171 Aldehyde dehydrogenase family AMD29_RS01945 PF01795 MraW methylase family AMD29_RS01955 PF03793 PASTA domain AMD29_RS01955 PF03717 Penicillin-binding Protein dimerisation domain AMD29_RS01955 PF00905 Penicillin binding protein transpeptidase domain AMD29_RS01960 PF00953 Glycosyl transferase family 4 AMD29_RS01960 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMD29_RS01965 PF00270 DEAD/DEAH box helicase AMD29_RS01965 PF00271 Helicase conserved C-terminal domain AMD29_RS01970 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD29_RS01975 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS01980 PF00005 ABC transporter AMD29_RS01990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS01995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD29_RS01995 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AMD29_RS01995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD29_RS02000 PF02540 NAD synthase AMD29_RS02005 PF03051 Peptidase C1-like family AMD29_RS02010 PF00905 Penicillin binding protein transpeptidase domain AMD29_RS02010 PF00912 Transglycosylase AMD29_RS02015 PF03838 Recombination protein U AMD29_RS02020 PF06908 YspA SLOG family AMD29_RS02025 PF05103 DivIVA protein AMD29_RS02035 PF01170 Putative RNA methylase family UPF0020 AMD29_RS02035 PF02926 THUMP domain AMD29_RS02040 PF18041 MapZ extracellular domain 1 AMD29_RS02040 PF18708 MapZ extracellular C-terminal domain 2 AMD29_RS02045 PF02664 S-Ribosylhomocysteinase (LuxS) AMD29_RS02050 PF12072 Domain of unknown function (DUF3552) AMD29_RS02050 PF00013 KH domain AMD29_RS02050 PF01966 HD domain AMD29_RS02055 PF00005 ABC transporter AMD29_RS02065 PF07730 Histidine kinase AMD29_RS02065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS02070 PF00072 Response regulator receiver domain AMD29_RS02070 PF00196 Bacterial regulatory proteins, luxR family AMD29_RS02075 PF06736 Protein of unknown function (DUF1211) AMD29_RS02080 PF00625 Guanylate kinase AMD29_RS02085 PF01192 RNA polymerase Rpb6 AMD29_RS02090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD29_RS02090 PF17764 3′ DNA-binding domain (3′BD) AMD29_RS02090 PF00271 Helicase conserved C-terminal domain AMD29_RS02090 PF04851 Type III restriction enzyme, res subunit AMD29_RS02090 PF18074 Primosomal protein N C-terminal domain AMD29_RS02095 PF02911 Formyl transferase, C-terminal domain AMD29_RS02095 PF00551 Formyl transferase AMD29_RS02100 PF01189 16S rRNA methyltransferase RsmB/F AMD29_RS02100 PF01029 NusB family AMD29_RS02110 PF00069 Protein kinase domain AMD29_RS02110 PF03793 PASTA domain AMD29_RS02120 PF07730 Histidine kinase AMD29_RS02120 PF00672 HAMP domain AMD29_RS02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS02125 PF00196 Bacterial regulatory proteins, luxR family AMD29_RS02125 PF00072 Response regulator receiver domain AMD29_RS02130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD29_RS02135 PF00575 S1 RNA binding domain AMD29_RS02140 PF04055 Radical SAM superfamily AMD29_RS02145 PF00455 DeoR C terminal sensor domain AMD29_RS02145 PF08220 DeoR-like helix-turn-helix domain AMD29_RS02150 PF04198 Putative sugar-binding domain AMD29_RS02150 PF13936 Helix-turn-helix domain AMD29_RS02155 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AMD29_RS02165 PF02378 Phosphotransferase system, EIIC AMD29_RS02170 PF02901 Pyruvate formate lyase-like AMD29_RS02170 PF01228 Glycine radical AMD29_RS02175 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD29_RS02180 PF00465 Iron-containing alcohol dehydrogenase AMD29_RS02185 PF00291 Pyridoxal-phosphate dependent enzyme AMD29_RS02190 PF09186 Domain of unknown function (DUF1949) AMD29_RS02190 PF01205 Uncharacterized protein family UPF0029 AMD29_RS02195 PF04851 Type III restriction enzyme, res subunit AMD29_RS02195 PF00271 Helicase conserved C-terminal domain AMD29_RS02205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD29_RS02205 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AMD29_RS02235 PF13840 ACT domain AMD29_RS02235 PF00696 Amino acid kinase family AMD29_RS02240 PF13419 Haloacid dehalogenase-like hydrolase AMD29_RS02245 PF00378 Enoyl-CoA hydratase/isomerase AMD29_RS02255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD29_RS02255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD29_RS02260 PF00550 Phosphopantetheine attachment site AMD29_RS02265 PF03060 Nitronate monooxygenase AMD29_RS02270 PF00698 Acyl transferase domain AMD29_RS02280 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD29_RS02280 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD29_RS02285 PF00364 Biotin-requiring enzyme AMD29_RS02290 PF07977 FabA-like domain AMD29_RS02295 PF00289 Biotin carboxylase, N-terminal domain AMD29_RS02295 PF02785 Biotin carboxylase C-terminal domain AMD29_RS02295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD29_RS02300 PF17848 Acetyl-coA carboxylase zinc finger domain AMD29_RS02300 PF01039 Carboxyl transferase domain AMD29_RS02305 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD29_RS02315 PF02403 Seryl-tRNA synthetase N-terminal domain AMD29_RS02315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD29_RS02330 PF03613 PTS system mannose/fructose/sorbose family IID component AMD29_RS02335 PF03609 PTS system sorbose-specific iic component AMD29_RS02340 PF03610 PTS system fructose IIA component AMD29_RS02340 PF03830 PTS system sorbose subfamily IIB component AMD29_RS02360 PF00860 Permease family AMD29_RS02365 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD29_RS02370 PF13302 Acetyltransferase (GNAT) domain AMD29_RS02375 PF03816 Cell envelope-related transcriptional attenuator domain AMD29_RS02385 PF01230 HIT domain AMD29_RS02400 PF00005 ABC transporter AMD29_RS02405 PF05975 Bacterial ABC transporter protein EcsB AMD29_RS02415 PF02390 Putative methyltransferase AMD29_RS02425 PF17384 RimP C-terminal SH3 domain AMD29_RS02425 PF02576 RimP N-terminal domain AMD29_RS02430 PF13184 NusA-like KH domain AMD29_RS02430 PF00575 S1 RNA binding domain AMD29_RS02430 PF08529 NusA N-terminal domain AMD29_RS02435 PF04296 Protein of unknown function (DUF448) AMD29_RS02440 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AMD29_RS02445 PF00009 Elongation factor Tu GTP binding domain AMD29_RS02445 PF11987 Translation-initiation factor 2 AMD29_RS02445 PF04760 Translation initiation factor IF-2, N-terminal region AMD29_RS02450 PF02033 Ribosome-binding factor A AMD29_RS02455 PF07859 alpha/beta hydrolase fold AMD29_RS02460 PF03965 Penicillinase repressor AMD29_RS02465 PF00403 Heavy-metal-associated domain AMD29_RS02475 PF03458 UPF0126 domain AMD29_RS02485 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD29_RS02485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD29_RS02485 PF00476 DNA polymerase family A AMD29_RS02490 PF13380 CoA binding domain AMD29_RS02495 PF01475 Ferric uptake regulator family AMD29_RS02505 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS02505 PF00072 Response regulator receiver domain AMD29_RS02510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS02510 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS02520 PF01702 Queuine tRNA-ribosyltransferase AMD29_RS02530 PF02632 BioY family AMD29_RS02535 PF12706 Beta-lactamase superfamily domain AMD29_RS02540 PF14437 MafB19-like deaminase AMD29_RS02550 PF00342 Phosphoglucose isomerase AMD29_RS02555 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD29_RS02560 PF01694 Rhomboid family AMD29_RS02565 PF02608 ABC transporter substrate-binding protein PnrA-like AMD29_RS02570 PF00483 Nucleotidyl transferase AMD29_RS02575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD29_RS02575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD29_RS02580 PF00825 Ribonuclease P AMD29_RS02585 PF02096 60Kd inner membrane protein AMD29_RS02635 PF04167 Protein of unknown function (DUF402) AMD29_RS02640 PF02631 RecX family AMD29_RS02645 PF05958 tRNA (Uracil-5-)-methyltransferase AMD29_RS02645 PF01938 TRAM domain AMD29_RS02655 PF13673 Acetyltransferase (GNAT) domain AMD29_RS02660 PF00082 Subtilase family AMD29_RS02660 PF02225 PA domain AMD29_RS02660 PF06280 Fn3-like domain AMD29_RS02665 PF00535 Glycosyl transferase family 2 AMD29_RS02665 PF01501 Glycosyl transferase family 8 AMD29_RS02670 PF00268 Ribonucleotide reductase, small chain AMD29_RS02675 PF07972 NrdI Flavodoxin like AMD29_RS02680 PF02867 Ribonucleotide reductase, barrel domain AMD29_RS02680 PF00317 Ribonucleotide reductase, all-alpha domain AMD29_RS02680 PF08343 Ribonucleotide reductase N-terminal AMD29_RS02700 PF02627 Carboxymuconolactone decarboxylase family AMD29_RS02710 PF13411 MerR HTH family regulatory protein AMD29_RS02720 PF00248 Aldo/keto reductase family AMD29_RS02725 PF01545 Cation efflux family AMD29_RS02735 PF12833 Helix-turn-helix domain AMD29_RS02740 PF17480 AlphaC C-terminal AMD29_RS02740 PF04650 YSIRK type signal peptide AMD29_RS02740 PF00746 LPXTG cell wall anchor motif AMD29_RS02740 PF08829 Alpha C protein N terminal AMD29_RS02765 PF13649 Methyltransferase domain AMD29_RS02770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS02775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS02780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS02785 PF03611 PTS system sugar-specific permease component AMD29_RS02790 PF00596 Class II Aldolase and Adducin N-terminal domain AMD29_RS02800 PF03611 PTS system sugar-specific permease component AMD29_RS02805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS02810 PF12833 Helix-turn-helix domain AMD29_RS02810 PF02311 AraC-like ligand binding domain AMD29_RS02825 PF01547 Bacterial extracellular solute-binding protein AMD29_RS02830 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS02840 PF16875 Glycosyl hydrolase family 36 N-terminal domain AMD29_RS02840 PF16874 Glycosyl hydrolase family 36 C-terminal domain AMD29_RS02845 PF08544 GHMP kinases C terminal AMD29_RS02845 PF00288 GHMP kinases N terminal domain AMD29_RS02845 PF10509 Galactokinase galactose-binding signature AMD29_RS02850 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMD29_RS02850 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMD29_RS02855 PF16363 GDP-mannose 4,6 dehydratase AMD29_RS02860 PF01263 Aldose 1-epimerase AMD29_RS02885 PF08264 Anticodon-binding domain of tRNA AMD29_RS02885 PF00133 tRNA synthetases class I (I, L, M and V) AMD29_RS02885 PF10458 Valyl tRNA synthetase tRNA binding arm AMD29_RS02920 PF01867 CRISPR associated protein Cas1 AMD29_RS02925 PF09827 CRISPR associated protein Cas2 AMD29_RS02930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD29_RS02930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD29_RS02940 PF04237 YjbR AMD29_RS02945 PF03590 Aspartate-ammonia ligase AMD29_RS02965 PF01467 Cytidylyltransferase-like AMD29_RS02970 PF13180 PDZ domain AMD29_RS02970 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD29_RS02975 PF02872 5'-nucleotidase, C-terminal domain AMD29_RS02980 PF06265 Protein of unknown function (DUF1027) AMD29_RS02985 PF04055 Radical SAM superfamily AMD29_RS02995 PF00664 ABC transporter transmembrane region AMD29_RS02995 PF00005 ABC transporter AMD29_RS03000 PF00664 ABC transporter transmembrane region AMD29_RS03000 PF00005 ABC transporter AMD29_RS03005 PF00117 Glutamine amidotransferase class-I AMD29_RS03010 PF02632 BioY family AMD29_RS03015 PF04055 Radical SAM superfamily AMD29_RS03015 PF06968 Biotin and Thiamin Synthesis associated domain AMD29_RS03025 PF00108 Thiolase, N-terminal domain AMD29_RS03025 PF02803 Thiolase, C-terminal domain AMD29_RS03035 PF00633 Helix-hairpin-helix motif AMD29_RS03035 PF10576 Iron-sulfur binding domain of endonuclease III AMD29_RS03035 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD29_RS03050 PF00480 ROK family AMD29_RS03055 PF00581 Rhodanese-like domain AMD29_RS03060 PF00679 Elongation factor G C-terminus AMD29_RS03060 PF14492 Elongation Factor G, domain II AMD29_RS03060 PF00009 Elongation factor Tu GTP binding domain AMD29_RS03060 PF03144 Elongation factor Tu domain 2 AMD29_RS03070 PF08245 Mur ligase middle domain AMD29_RS03070 PF02875 Mur ligase family, glutamate ligase domain AMD29_RS03075 PF04101 Glycosyltransferase family 28 C-terminal domain AMD29_RS03075 PF03033 Glycosyltransferase family 28 N-terminal domain AMD29_RS03080 PF08478 POTRA domain, FtsQ-type AMD29_RS03085 PF11983 Membrane-attachment and polymerisation-promoting switch AMD29_RS03085 PF02491 SHS2 domain inserted in FTSA AMD29_RS03090 PF12327 FtsZ family, C-terminal domain AMD29_RS03090 PF00091 Tubulin/FtsZ family, GTPase domain AMD29_RS03095 PF01168 Alanine racemase, N-terminal domain AMD29_RS03100 PF04472 Cell division protein SepF AMD29_RS03105 PF02325 YGGT family AMD29_RS03110 PF17774 Putative RNA-binding domain in YlmH AMD29_RS03110 PF01479 S4 domain AMD29_RS03115 PF05103 DivIVA protein AMD29_RS03120 PF08264 Anticodon-binding domain of tRNA AMD29_RS03120 PF00133 tRNA synthetases class I (I, L, M and V) AMD29_RS03130 PF00293 NUDIX domain AMD29_RS03135 PF00004 ATPase family associated with various cellular activities (AAA) AMD29_RS03135 PF07724 AAA domain (Cdc48 subfamily) AMD29_RS03135 PF17871 AAA lid domain AMD29_RS03135 PF10431 C-terminal, D2-small domain, of ClpB protein AMD29_RS03140 PF08796 Protein of unknown function (DUF1797) AMD29_RS03145 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS03150 PF00005 ABC transporter AMD29_RS03155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD29_RS03155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD29_RS03155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD29_RS03155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD29_RS03160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD29_RS03160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD29_RS03165 PF01256 Carbohydrate kinase AMD29_RS03170 PF02601 Exonuclease VII, large subunit AMD29_RS03170 PF13742 OB-fold nucleic acid binding domain AMD29_RS03175 PF02609 Exonuclease VII small subunit AMD29_RS03180 PF00348 Polyprenyl synthetase AMD29_RS03185 PF01479 S4 domain AMD29_RS03185 PF01728 FtsJ-like methyltransferase AMD29_RS03190 PF02863 Arginine repressor, C-terminal domain AMD29_RS03190 PF01316 Arginine repressor, DNA binding domain AMD29_RS03195 PF13476 AAA domain AMD29_RS03200 PF02645 Uncharacterised protein, DegV family COG1307 AMD29_RS03205 PF13472 GDSL-like Lipase/Acylhydrolase family AMD29_RS03215 PF00216 Bacterial DNA-binding protein AMD29_RS03225 PF01180 Dihydroorotate dehydrogenase AMD29_RS03235 PF02388 FemAB family AMD29_RS03240 PF02388 FemAB family AMD29_RS03250 PF01966 HD domain AMD29_RS03260 PF00689 Cation transporting ATPase, C-terminus AMD29_RS03260 PF00690 Cation transporter/ATPase, N-terminus AMD29_RS03270 PF06874 Firmicute fructose-1,6-bisphosphatase AMD29_RS03275 PF08331 Domain of unknown function (DUF1730) AMD29_RS03280 PF00472 RF-1 domain AMD29_RS03280 PF03462 PCRF domain AMD29_RS03285 PF00005 ABC transporter AMD29_RS03290 PF02687 FtsX-like permease family AMD29_RS03290 PF18075 FtsX extracellular domain AMD29_RS03300 PF00753 Metallo-beta-lactamase superfamily AMD29_RS03310 PF13307 Helicase C-terminal domain AMD29_RS03310 PF04851 Type III restriction enzyme, res subunit AMD29_RS03310 PF00929 Exonuclease AMD29_RS03315 PF00155 Aminotransferase class I and II AMD29_RS03320 PF01336 OB-fold nucleic acid binding domain AMD29_RS03320 PF00152 tRNA synthetases class II (D, K and N) AMD29_RS03330 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD29_RS03340 PF03668 P-loop ATPase protein family AMD29_RS03345 PF01933 Uncharacterised protein family UPF0052 AMD29_RS03350 PF02650 WhiA C-terminal HTH domain AMD29_RS03350 PF14527 WhiA LAGLIDADG-like domain AMD29_RS03350 PF10298 WhiA N-terminal LAGLIDADG-like domain AMD29_RS03355 PF03577 Peptidase family C69 AMD29_RS03360 PF01297 Zinc-uptake complex component A periplasmic AMD29_RS03360 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AMD29_RS03365 PF01197 Ribosomal protein L31 AMD29_RS03370 PF02272 DHHA1 domain AMD29_RS03370 PF01368 DHH family AMD29_RS03375 PF00962 Adenosine/AMP deaminase AMD29_RS03380 PF00258 Flavodoxin AMD29_RS03385 PF01817 Chorismate mutase type II AMD29_RS03385 PF00793 DAHP synthetase I family AMD29_RS03390 PF00654 Voltage gated chloride channel AMD29_RS03395 PF01245 Ribosomal protein L19 AMD29_RS03430 PF00005 ABC transporter AMD29_RS03440 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS03440 PF00072 Response regulator receiver domain AMD29_RS03445 PF00672 HAMP domain AMD29_RS03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS03445 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS03450 PF01610 Transposase AMD29_RS03450 PF13683 Integrase core domain AMD29_RS03455 PF05532 CsbD-like AMD29_RS03460 PF01098 Cell cycle protein AMD29_RS03470 PF01751 Toprim domain AMD29_RS03470 PF00204 DNA gyrase B AMD29_RS03470 PF00986 DNA gyrase B subunit, carboxyl terminus AMD29_RS03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS03475 PF06160 Septation ring formation regulator, EzrA AMD29_RS03495 PF03952 Enolase, N-terminal domain AMD29_RS03495 PF00113 Enolase, C-terminal TIM barrel domain AMD29_RS03505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD29_RS03510 PF01202 Shikimate kinase AMD29_RS03515 PF03816 Cell envelope-related transcriptional attenuator domain AMD29_RS03520 PF05958 tRNA (Uracil-5-)-methyltransferase AMD29_RS03530 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD29_RS03550 PF04650 YSIRK type signal peptide AMD29_RS03550 PF08829 Alpha C protein N terminal AMD29_RS03550 PF00746 LPXTG cell wall anchor motif AMD29_RS03550 PF17480 AlphaC C-terminal AMD29_RS03555 PF01610 Transposase AMD29_RS03555 PF13683 Integrase core domain AMD29_RS03565 PF01430 Hsp33 protein AMD29_RS03630 PF00144 Beta-lactamase AMD29_RS03635 PF00005 ABC transporter AMD29_RS03665 PF00550 Phosphopantetheine attachment site AMD29_RS03670 PF07977 FabA-like domain AMD29_RS03675 PF00005 ABC transporter AMD29_RS03690 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD29_RS03690 PF01571 Aminomethyltransferase folate-binding domain AMD29_RS03695 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD29_RS03695 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD29_RS03715 PF06696 Streptococcal surface antigen repeat AMD29_RS03715 PF16364 Cell surface antigen C-terminus AMD29_RS03715 PF08363 Glucan-binding protein C AMD29_RS03715 PF00746 LPXTG cell wall anchor motif AMD29_RS03715 PF17998 Cell surface antigen I/II C2 terminal domain AMD29_RS03715 PF18652 Adhesin P1 N-terminal domain AMD29_RS03720 PF02225 PA domain AMD29_RS03720 PF00082 Subtilase family AMD29_RS03720 PF00746 LPXTG cell wall anchor motif AMD29_RS03720 PF06280 Fn3-like domain AMD29_RS03730 PF05649 Peptidase family M13 AMD29_RS03730 PF01431 Peptidase family M13 AMD29_RS03735 PF05649 Peptidase family M13 AMD29_RS03735 PF01431 Peptidase family M13 AMD29_RS03780 PF00005 ABC transporter AMD29_RS03790 PF01223 DNA/RNA non-specific endonuclease AMD29_RS03795 PF09335 SNARE associated Golgi protein AMD29_RS03800 PF00005 ABC transporter AMD29_RS03805 PF03649 Uncharacterised protein family (UPF0014) AMD29_RS03815 PF03466 LysR substrate binding domain AMD29_RS03815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD29_RS03825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD29_RS03825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD29_RS03835 PF00294 pfkB family carbohydrate kinase AMD29_RS03840 PF00703 Glycosyl hydrolases family 2 AMD29_RS03840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD29_RS03840 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD29_RS03845 PF07729 FCD domain AMD29_RS03845 PF00392 Bacterial regulatory proteins, gntR family AMD29_RS03850 PF01081 KDPG and KHG aldolase AMD29_RS03855 PF02614 Glucuronate isomerase AMD29_RS03860 PF03786 D-mannonate dehydratase (UxuA) AMD29_RS03865 PF00106 short chain dehydrogenase AMD29_RS03875 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD29_RS03880 PF01321 Creatinase/Prolidase N-terminal domain AMD29_RS03880 PF00557 Metallopeptidase family M24 AMD29_RS03885 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS03890 PF00128 Alpha amylase, catalytic domain AMD29_RS03890 PF09154 Domain of unknown function (DUF1939) AMD29_RS03895 PF00534 Glycosyl transferases group 1 AMD29_RS03895 PF13439 Glycosyltransferase Family 4 AMD29_RS03900 PF13439 Glycosyltransferase Family 4 AMD29_RS03900 PF00534 Glycosyl transferases group 1 AMD29_RS03905 PF02824 TGS domain AMD29_RS03905 PF03129 Anticodon binding domain AMD29_RS03905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD29_RS03905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD29_RS03910 PF00072 Response regulator receiver domain AMD29_RS03910 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS03920 PF03413 Peptidase propeptide and YPEB domain AMD29_RS03925 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS03930 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS03935 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD29_RS03940 PF00005 ABC transporter AMD29_RS03945 PF00072 Response regulator receiver domain AMD29_RS03945 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS03950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS03950 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS03950 PF00672 HAMP domain AMD29_RS03950 PF13426 PAS domain AMD29_RS03955 PF00753 Metallo-beta-lactamase superfamily AMD29_RS03960 PF04304 Protein of unknown function (DUF454) AMD29_RS03965 PF00035 Double-stranded RNA binding motif AMD29_RS03965 PF14622 Ribonuclease-III-like AMD29_RS03970 PF06470 SMC proteins Flexible Hinge Domain AMD29_RS03970 PF02463 RecF/RecN/SMC N terminal domain AMD29_RS03985 PF02881 SRP54-type protein, helical bundle domain AMD29_RS03985 PF00448 SRP54-type protein, GTPase domain AMD29_RS03990 PF09323 Domain of unknown function (DUF1980) AMD29_RS03995 PF03773 Predicted permease AMD29_RS04010 PF09371 Tex-like protein N-terminal domain AMD29_RS04010 PF17674 HHH domain AMD29_RS04010 PF00575 S1 RNA binding domain AMD29_RS04010 PF16921 Tex protein YqgF-like domain AMD29_RS04015 PF10263 SprT-like family AMD29_RS04020 PF04024 PspC domain AMD29_RS04025 PF02603 HPr Serine kinase N terminus AMD29_RS04025 PF07475 HPr Serine kinase C-terminal domain AMD29_RS04030 PF01790 Prolipoprotein diacylglyceryl transferase AMD29_RS04040 PF12732 YtxH-like protein AMD29_RS04055 PF01136 Peptidase family U32 AMD29_RS04055 PF16325 Peptidase family U32 C-terminal domain AMD29_RS04060 PF02229 Transcriptional Coactivator p15 (PC4) AMD29_RS04070 PF01566 Natural resistance-associated macrophage protein AMD29_RS04075 PF01872 RibD C-terminal domain AMD29_RS04075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD29_RS04080 PF00677 Lumazine binding domain AMD29_RS04085 PF00925 GTP cyclohydrolase II AMD29_RS04085 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD29_RS04090 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD29_RS04095 PF01336 OB-fold nucleic acid binding domain AMD29_RS04095 PF00152 tRNA synthetases class II (D, K and N) AMD29_RS04110 PF04073 Aminoacyl-tRNA editing domain AMD29_RS04115 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD29_RS04135 PF01432 Peptidase family M3 AMD29_RS04135 PF08439 Oligopeptidase F AMD29_RS04140 PF00311 Phosphoenolpyruvate carboxylase AMD29_RS04145 PF01098 Cell cycle protein AMD29_RS04150 PF00009 Elongation factor Tu GTP binding domain AMD29_RS04150 PF03143 Elongation factor Tu C-terminal domain AMD29_RS04150 PF03144 Elongation factor Tu domain 2 AMD29_RS04155 PF00121 Triosephosphate isomerase AMD29_RS04160 PF00300 Histidine phosphatase superfamily (branch 1) AMD29_RS04165 PF03717 Penicillin-binding Protein dimerisation domain AMD29_RS04165 PF00905 Penicillin binding protein transpeptidase domain AMD29_RS04170 PF02132 RecR protein AMD29_RS04170 PF13662 Toprim domain AMD29_RS04175 PF01820 D-ala D-ala ligase N-terminus AMD29_RS04175 PF07478 D-ala D-ala ligase C-terminus AMD29_RS04180 PF08245 Mur ligase middle domain AMD29_RS04180 PF02875 Mur ligase family, glutamate ligase domain AMD29_RS04180 PF01225 Mur ligase family, catalytic domain AMD29_RS04185 PF07690 Major Facilitator Superfamily AMD29_RS04200 PF00009 Elongation factor Tu GTP binding domain AMD29_RS04200 PF03144 Elongation factor Tu domain 2 AMD29_RS04200 PF16658 Class II release factor RF3, C-terminal domain AMD29_RS04205 PF08000 Bacterial PH domain AMD29_RS04215 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS04220 PF03180 NLPA lipoprotein AMD29_RS04225 PF00271 Helicase conserved C-terminal domain AMD29_RS04225 PF00270 DEAD/DEAH box helicase AMD29_RS04230 PF01541 GIY-YIG catalytic domain AMD29_RS04235 PF05175 Methyltransferase small domain AMD29_RS04240 PF01553 Acyltransferase AMD29_RS04245 PF10531 SLBB domain AMD29_RS04250 PF03772 Competence protein AMD29_RS04250 PF13567 Domain of unknown function (DUF4131) AMD29_RS04250 PF00753 Metallo-beta-lactamase superfamily AMD29_RS04260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMD29_RS04260 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS04265 PF07859 alpha/beta hydrolase fold AMD29_RS04265 PF00934 PE family AMD29_RS04270 PF01209 ubiE/COQ5 methyltransferase family AMD29_RS04280 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD29_RS04280 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD29_RS04285 PF03123 CAT RNA binding domain AMD29_RS04285 PF00874 PRD domain AMD29_RS04290 PF02378 Phosphotransferase system, EIIC AMD29_RS04290 PF00367 phosphotransferase system, EIIB AMD29_RS04290 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD29_RS04295 PF00232 Glycosyl hydrolase family 1 AMD29_RS04300 PF05651 Putative sugar diacid recognition AMD29_RS04300 PF17853 GGDEF-like domain AMD29_RS04300 PF13556 PucR C-terminal helix-turn-helix domain AMD29_RS04305 PF02595 Glycerate kinase family AMD29_RS04310 PF02447 GntP family permease AMD29_RS04320 PF01047 MarR family AMD29_RS04325 PF02547 Queuosine biosynthesis protein AMD29_RS04335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD29_RS04340 PF13409 Glutathione S-transferase, N-terminal domain AMD29_RS04345 PF00849 RNA pseudouridylate synthase AMD29_RS04345 PF01479 S4 domain AMD29_RS04360 PF08439 Oligopeptidase F AMD29_RS04360 PF01432 Peptidase family M3 AMD29_RS04370 PF01596 O-methyltransferase AMD29_RS04375 PF13145 PPIC-type PPIASE domain AMD29_RS04380 PF04525 LURP-one-related AMD29_RS04385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD29_RS04385 PF02272 DHHA1 domain AMD29_RS04385 PF01411 tRNA synthetases class II (A) AMD29_RS04395 PF01501 Glycosyl transferase family 8 AMD29_RS04395 PF08437 Glycosyl transferase family 8 C-terminal AMD29_RS04410 PF01381 Helix-turn-helix AMD29_RS04420 PF09515 Thiamine transporter protein (Thia_YuaJ) AMD29_RS04425 PF00268 Ribonucleotide reductase, small chain AMD29_RS04430 PF08343 Ribonucleotide reductase N-terminal AMD29_RS04430 PF02867 Ribonucleotide reductase, barrel domain AMD29_RS04430 PF00317 Ribonucleotide reductase, all-alpha domain AMD29_RS04435 PF00462 Glutaredoxin AMD29_RS04440 PF00381 PTS HPr component phosphorylation site AMD29_RS04445 PF02896 PEP-utilising enzyme, TIM barrel domain AMD29_RS04445 PF00391 PEP-utilising enzyme, mobile domain AMD29_RS04445 PF05524 PEP-utilising enzyme, N-terminal AMD29_RS04450 PF00171 Aldehyde dehydrogenase family AMD29_RS04455 PF01522 Polysaccharide deacetylase AMD29_RS04455 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AMD29_RS04460 PF00271 Helicase conserved C-terminal domain AMD29_RS04460 PF00270 DEAD/DEAH box helicase AMD29_RS04465 PF00485 Phosphoribulokinase / Uridine kinase family AMD29_RS04470 PF13185 GAF domain AMD29_RS04475 PF12169 DNA polymerase III subunits gamma and tau domain III AMD29_RS04485 PF02237 Biotin protein ligase C terminal domain AMD29_RS04485 PF08279 HTH domain AMD29_RS04485 PF03099 Biotin/lipoate A/B protein ligase family AMD29_RS04490 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD29_RS04490 PF02772 S-adenosylmethionine synthetase, central domain AMD29_RS04490 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD29_RS04500 PF08764 Staphylococcus aureus coagulase AMD29_RS04500 PF04022 Staphylocoagulase repeat AMD29_RS04515 PF09819 ABC-type cobalt transport system, permease component AMD29_RS04520 PF00005 ABC transporter AMD29_RS04530 PF03070 TENA/THI-4/PQQC family AMD29_RS04535 PF08543 Phosphomethylpyrimidine kinase AMD29_RS04540 PF02110 Hydroxyethylthiazole kinase family AMD29_RS04545 PF02581 Thiamine monophosphate synthase AMD29_RS04550 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD29_RS04560 PF07085 DRTGG domain AMD29_RS04560 PF00392 Bacterial regulatory proteins, gntR family AMD29_RS04560 PF03061 Thioesterase superfamily AMD29_RS04560 PF00571 CBS domain AMD29_RS04565 PF00557 Metallopeptidase family M24 AMD29_RS04575 PF04138 GtrA-like protein AMD29_RS04580 PF06177 QueT transporter AMD29_RS04585 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD29_RS04585 PF01653 NAD-dependent DNA ligase adenylation domain AMD29_RS04585 PF03120 NAD-dependent DNA ligase OB-fold domain AMD29_RS04585 PF00533 BRCA1 C Terminus (BRCT) domain AMD29_RS04585 PF12826 Helix-hairpin-helix motif AMD29_RS04590 PF00781 Diacylglycerol kinase catalytic domain AMD29_RS04595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD29_RS04595 PF00128 Alpha amylase, catalytic domain AMD29_RS04595 PF17999 Pullulanase N1-terminal domain AMD29_RS04600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD29_RS04600 PF02806 Alpha amylase, C-terminal all-beta domain AMD29_RS04600 PF00128 Alpha amylase, catalytic domain AMD29_RS04605 PF00132 Bacterial transferase hexapeptide (six repeats) AMD29_RS04605 PF00483 Nucleotidyl transferase AMD29_RS04610 PF00483 Nucleotidyl transferase AMD29_RS04615 PF08323 Starch synthase catalytic domain AMD29_RS04615 PF00534 Glycosyl transferases group 1 AMD29_RS04620 PF00137 ATP synthase subunit C AMD29_RS04625 PF00119 ATP synthase A chain AMD29_RS04630 PF00430 ATP synthase B/B' CF(0) AMD29_RS04635 PF00213 ATP synthase delta (OSCP) subunit AMD29_RS04640 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD29_RS04640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD29_RS04640 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD29_RS04645 PF00231 ATP synthase AMD29_RS04650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD29_RS04650 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD29_RS04655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD29_RS04655 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD29_RS04665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD29_RS04675 PF01223 DNA/RNA non-specific endonuclease AMD29_RS04680 PF01409 tRNA synthetases class II core domain (F) AMD29_RS04680 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD29_RS04685 PF13673 Acetyltransferase (GNAT) domain AMD29_RS04690 PF03483 B3/4 domain AMD29_RS04690 PF03484 tRNA synthetase B5 domain AMD29_RS04690 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD29_RS04690 PF01588 Putative tRNA binding domain AMD29_RS04690 PF03147 Ferredoxin-fold anticodon binding domain AMD29_RS04695 PF04228 Putative neutral zinc metallopeptidase AMD29_RS04700 PF12705 PD-(D/E)XK nuclease superfamily AMD29_RS04705 PF13361 UvrD-like helicase C-terminal domain AMD29_RS04705 PF12705 PD-(D/E)XK nuclease superfamily AMD29_RS04705 PF00580 UvrD/REP helicase N-terminal domain AMD29_RS04715 PF10396 GTP-binding protein TrmE N-terminus AMD29_RS04715 PF12631 MnmE helical domain AMD29_RS04715 PF01926 50S ribosome-binding GTPase AMD29_RS04720 PF16326 ABC transporter C-terminal domain AMD29_RS04720 PF00005 ABC transporter AMD29_RS04720 PF12848 ABC transporter AMD29_RS04725 PF00676 Dehydrogenase E1 component AMD29_RS04730 PF02779 Transketolase, pyrimidine binding domain AMD29_RS04730 PF02780 Transketolase, C-terminal domain AMD29_RS04730 PF00364 Biotin-requiring enzyme AMD29_RS04735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD29_RS04735 PF02817 e3 binding domain AMD29_RS04735 PF00364 Biotin-requiring enzyme AMD29_RS04740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD29_RS04740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS04745 PF10437 Bacterial lipoate protein ligase C-terminus AMD29_RS04745 PF03099 Biotin/lipoate A/B protein ligase family AMD29_RS04750 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD29_RS04755 PF08353 Domain of unknown function (DUF1727) AMD29_RS04755 PF08245 Mur ligase middle domain AMD29_RS04760 PF02457 DisA bacterial checkpoint controller nucleotide-binding AMD29_RS04770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD29_RS04770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD29_RS04770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD29_RS04770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD29_RS04785 PF06969 HemN C-terminal domain AMD29_RS04785 PF04055 Radical SAM superfamily AMD29_RS04795 PF13344 Haloacid dehalogenase-like hydrolase AMD29_RS04805 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 AMD29_RS04805 PF13395 HNH endonuclease AMD29_RS04805 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 AMD29_RS04805 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 AMD29_RS04810 PF01867 CRISPR associated protein Cas1 AMD29_RS04815 PF09827 CRISPR associated protein Cas2 AMD29_RS04820 PF09711 CRISPR-associated protein (Cas_Csn2) AMD29_RS04830 PF00334 Nucleoside diphosphate kinase AMD29_RS04835 PF00009 Elongation factor Tu GTP binding domain AMD29_RS04835 PF03144 Elongation factor Tu domain 2 AMD29_RS04835 PF06421 GTP-binding protein LepA C-terminus AMD29_RS04835 PF00679 Elongation factor G C-terminus AMD29_RS04845 PF01966 HD domain AMD29_RS04850 PF13673 Acetyltransferase (GNAT) domain AMD29_RS04855 PF01641 SelR domain AMD29_RS04860 PF00690 Cation transporter/ATPase, N-terminus AMD29_RS04860 PF00689 Cation transporting ATPase, C-terminus AMD29_RS04870 PF00132 Bacterial transferase hexapeptide (six repeats) AMD29_RS04890 PF00005 ABC transporter AMD29_RS04895 PF00392 Bacterial regulatory proteins, gntR family AMD29_RS04900 PF01336 OB-fold nucleic acid binding domain AMD29_RS04900 PF14579 Helix-hairpin-helix motif AMD29_RS04900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD29_RS04900 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD29_RS04900 PF02811 PHP domain AMD29_RS04905 PF00365 Phosphofructokinase AMD29_RS04910 PF02887 Pyruvate kinase, alpha/beta domain AMD29_RS04910 PF00224 Pyruvate kinase, barrel domain AMD29_RS04915 PF10502 Signal peptidase, peptidase S26 AMD29_RS04920 PF01380 SIS domain AMD29_RS04925 PF03831 PhnA domain AMD29_RS04925 PF08274 PhnA Zinc-Ribbon AMD29_RS04930 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS04935 PF00005 ABC transporter AMD29_RS04945 PF01649 Ribosomal protein S20 AMD29_RS04950 PF00485 Phosphoribulokinase / Uridine kinase family AMD29_RS04955 PF05175 Methyltransferase small domain AMD29_RS04960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD29_RS04965 PF02608 ABC transporter substrate-binding protein PnrA-like AMD29_RS04970 PF00005 ABC transporter AMD29_RS04975 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS04980 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS04985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD29_RS04985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS04990 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD29_RS04990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD29_RS04995 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD29_RS04995 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD29_RS05000 PF04203 Sortase domain AMD29_RS05005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD29_RS05015 PF00999 Sodium/hydrogen exchanger family AMD29_RS05030 PF02540 NAD synthase AMD29_RS05030 PF00117 Glutamine amidotransferase class-I AMD29_RS05030 PF00958 GMP synthase C terminal domain AMD29_RS05035 PF07702 UTRA domain AMD29_RS05035 PF00392 Bacterial regulatory proteins, gntR family AMD29_RS05040 PF01134 Glucose inhibited division protein A AMD29_RS05050 PF03180 NLPA lipoprotein AMD29_RS05060 PF03572 Peptidase family S41 AMD29_RS05065 PF00005 ABC transporter AMD29_RS05075 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS05075 PF00072 Response regulator receiver domain AMD29_RS05080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS05085 PF13495 Phage integrase, N-terminal SAM-like domain AMD29_RS05085 PF00589 Phage integrase family AMD29_RS05090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD29_RS05105 PF02881 SRP54-type protein, helical bundle domain AMD29_RS05105 PF02978 Signal peptide binding domain AMD29_RS05105 PF00448 SRP54-type protein, GTPase domain AMD29_RS05110 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AMD29_RS05115 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS05115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS05120 PF00072 Response regulator receiver domain AMD29_RS05120 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS05125 PF01433 Peptidase family M1 domain AMD29_RS05125 PF11838 ERAP1-like C-terminal domain AMD29_RS05130 PF01895 PhoU domain AMD29_RS05135 PF00005 ABC transporter AMD29_RS05140 PF00005 ABC transporter AMD29_RS05145 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS05150 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS05155 PF12849 PBP superfamily domain AMD29_RS05160 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AMD29_RS05160 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AMD29_RS05160 PF01189 16S rRNA methyltransferase RsmB/F AMD29_RS05165 PF00459 Inositol monophosphatase family AMD29_RS05170 PF05256 Uncharacterised protein family (UPF0223) AMD29_RS05175 PF03960 ArsC family AMD29_RS05180 PF06574 FAD synthetase AMD29_RS05180 PF01687 Riboflavin kinase AMD29_RS05185 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD29_RS05185 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD29_RS05215 PF00005 ABC transporter AMD29_RS05220 PF01396 Topoisomerase DNA binding C4 zinc finger AMD29_RS05220 PF01131 DNA topoisomerase AMD29_RS05220 PF01751 Toprim domain AMD29_RS05225 PF18255 DNA processing protein A sterile alpha motif domain AMD29_RS05225 PF02481 DNA recombination-mediator protein A AMD29_RS05230 PF01497 Periplasmic binding protein AMD29_RS05235 PF00005 ABC transporter AMD29_RS05240 PF01032 FecCD transport family AMD29_RS05245 PF01032 FecCD transport family AMD29_RS05250 PF14602 Hexapeptide repeat of succinyl-transferase AMD29_RS05250 PF12464 Maltose acetyltransferase AMD29_RS05255 PF01351 Ribonuclease HII AMD29_RS05260 PF01926 50S ribosome-binding GTPase AMD29_RS05265 PF03734 L,D-transpeptidase catalytic domain AMD29_RS05270 PF02554 Carbon starvation protein CstA AMD29_RS05275 PF04397 LytTr DNA-binding domain AMD29_RS05275 PF00072 Response regulator receiver domain AMD29_RS05280 PF13492 GAF domain AMD29_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS05280 PF07694 5TMR of 5TMR-LYT AMD29_RS05280 PF06580 Histidine kinase AMD29_RS05335 PF12538 DNA transporter AMD29_RS05335 PF01580 FtsK/SpoIIIE family AMD29_RS05340 PF10140 WXG100 protein secretion system (Wss), protein YukC AMD29_RS05360 PF06013 Proteins of 100 residues with WXG AMD29_RS05365 PF06013 Proteins of 100 residues with WXG AMD29_RS05380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD29_RS05380 PF02142 MGS-like domain AMD29_RS05380 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD29_RS05385 PF00117 Glutamine amidotransferase class-I AMD29_RS05385 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD29_RS05390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD29_RS05390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD29_RS05395 PF01979 Amidohydrolase family AMD29_RS05400 PF00156 Phosphoribosyl transferase domain AMD29_RS05405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD29_RS05415 PF12848 ABC transporter AMD29_RS05415 PF00005 ABC transporter AMD29_RS05435 PF13091 PLD-like domain AMD29_RS05440 PF01268 Formate--tetrahydrofolate ligase AMD29_RS05445 PF03099 Biotin/lipoate A/B protein ligase family AMD29_RS05445 PF10437 Bacterial lipoate protein ligase C-terminus AMD29_RS05455 PF01661 Macro domain AMD29_RS05460 PF01597 Glycine cleavage H-protein AMD29_RS05470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD29_RS05475 PF03099 Biotin/lipoate A/B protein ligase family AMD29_RS05485 PF02441 Flavoprotein AMD29_RS05490 PF12822 ECF transporter, substrate-specific component AMD29_RS05495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD29_RS05495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD29_RS05495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD29_RS05495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD29_RS05505 PF00005 ABC transporter AMD29_RS05505 PF00664 ABC transporter transmembrane region AMD29_RS05510 PF00664 ABC transporter transmembrane region AMD29_RS05510 PF00005 ABC transporter AMD29_RS05525 PF00464 Serine hydroxymethyltransferase AMD29_RS05530 PF01300 Telomere recombination AMD29_RS05535 PF05175 Methyltransferase small domain AMD29_RS05540 PF00472 RF-1 domain AMD29_RS05540 PF03462 PCRF domain AMD29_RS05545 PF00265 Thymidine kinase AMD29_RS05550 PF01361 Tautomerase enzyme AMD29_RS05555 PF02424 ApbE family AMD29_RS05560 PF00890 FAD binding domain AMD29_RS05560 PF04205 FMN-binding domain AMD29_RS05560 PF03358 NADPH-dependent FMN reductase AMD29_RS05565 PF03358 NADPH-dependent FMN reductase AMD29_RS05565 PF04205 FMN-binding domain AMD29_RS05565 PF00890 FAD binding domain AMD29_RS05575 PF00860 Permease family AMD29_RS05580 PF00156 Phosphoribosyl transferase domain AMD29_RS05585 PF00478 IMP dehydrogenase / GMP reductase domain AMD29_RS05590 PF07690 Major Facilitator Superfamily AMD29_RS05600 PF02705 K+ potassium transporter AMD29_RS05605 PF00106 short chain dehydrogenase AMD29_RS05610 PF01515 Phosphate acetyl/butaryl transferase AMD29_RS05615 PF00849 RNA pseudouridylate synthase AMD29_RS05620 PF01513 ATP-NAD kinase AMD29_RS05625 PF04607 Region found in RelA / SpoT proteins AMD29_RS05635 PF14572 Phosphoribosyl synthetase-associated domain AMD29_RS05635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD29_RS05640 PF00266 Aminotransferase class-V AMD29_RS05650 PF02629 CoA binding domain AMD29_RS05650 PF06971 Putative DNA-binding protein N-terminus AMD29_RS05655 PF04002 RadC-like JAB domain AMD29_RS05660 PF01594 AI-2E family transporter AMD29_RS05665 PF00232 Glycosyl hydrolase family 1 AMD29_RS05680 PF12852 Cupin AMD29_RS05680 PF12833 Helix-turn-helix domain AMD29_RS05685 PF00654 Voltage gated chloride channel AMD29_RS05690 PF13416 Bacterial extracellular solute-binding protein AMD29_RS05695 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS05705 PF08402 TOBE domain AMD29_RS05705 PF00005 ABC transporter AMD29_RS05710 PF01565 FAD binding domain AMD29_RS05710 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD29_RS05715 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD29_RS05720 PF02152 Dihydroneopterin aldolase AMD29_RS05725 PF00809 Pterin binding enzyme AMD29_RS05730 PF01227 GTP cyclohydrolase I AMD29_RS05735 PF02875 Mur ligase family, glutamate ligase domain AMD29_RS05735 PF08245 Mur ligase middle domain AMD29_RS05740 PF00892 EamA-like transporter family AMD29_RS05745 PF08544 GHMP kinases C terminal AMD29_RS05745 PF00288 GHMP kinases N terminal domain AMD29_RS05750 PF00742 Homoserine dehydrogenase AMD29_RS05750 PF03447 Homoserine dehydrogenase, NAD binding domain AMD29_RS05755 PF01522 Polysaccharide deacetylase AMD29_RS05760 PF02028 BCCT, betaine/carnitine/choline family transporter AMD29_RS05780 PF00171 Aldehyde dehydrogenase family AMD29_RS05785 PF03601 Conserved hypothetical protein 698 AMD29_RS05815 PF08534 Redoxin AMD29_RS05835 PF03780 Asp23 family, cell envelope-related function AMD29_RS05840 PF05532 CsbD-like AMD29_RS05845 PF03780 Asp23 family, cell envelope-related function AMD29_RS05860 PF04226 Transglycosylase associated protein AMD29_RS05870 PF13361 UvrD-like helicase C-terminal domain AMD29_RS05870 PF00580 UvrD/REP helicase N-terminal domain AMD29_RS05880 PF00860 Permease family AMD29_RS05885 PF01235 Sodium:alanine symporter family AMD29_RS05890 PF16916 Dimerisation domain of Zinc Transporter AMD29_RS05890 PF01545 Cation efflux family AMD29_RS05895 PF03788 LrgA family AMD29_RS05900 PF04172 LrgB-like family AMD29_RS05915 PF00575 S1 RNA binding domain AMD29_RS05935 PF01063 Amino-transferase class IV AMD29_RS05940 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD29_RS05940 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD29_RS05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS05945 PF00986 DNA gyrase B subunit, carboxyl terminus AMD29_RS05945 PF00204 DNA gyrase B AMD29_RS05945 PF01751 Toprim domain AMD29_RS05950 PF02660 Glycerol-3-phosphate acyltransferase AMD29_RS05965 PF03167 Uracil DNA glycosylase superfamily AMD29_RS05975 PF02348 Cytidylyltransferase AMD29_RS05975 PF13472 GDSL-like Lipase/Acylhydrolase family AMD29_RS05985 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD29_RS05990 PF03102 NeuB family AMD29_RS05990 PF08666 SAF domain AMD29_RS05995 PF01943 Polysaccharide biosynthesis protein AMD29_RS06005 PF01501 Glycosyl transferase family 8 AMD29_RS06005 PF00535 Glycosyl transferase family 2 AMD29_RS06010 PF01501 Glycosyl transferase family 8 AMD29_RS06010 PF00535 Glycosyl transferase family 2 AMD29_RS06025 PF03033 Glycosyltransferase family 28 N-terminal domain AMD29_RS06025 PF04101 Glycosyltransferase family 28 C-terminal domain AMD29_RS06030 PF02397 Bacterial sugar transferase AMD29_RS06035 PF13614 AAA domain AMD29_RS06040 PF02706 Chain length determinant protein AMD29_RS06050 PF03816 Cell envelope-related transcriptional attenuator domain AMD29_RS06055 PF03466 LysR substrate binding domain AMD29_RS06055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD29_RS06065 PF01048 Phosphorylase superfamily AMD29_RS06070 PF00654 Voltage gated chloride channel AMD29_RS06075 PF01048 Phosphorylase superfamily AMD29_RS06080 PF03960 ArsC family AMD29_RS06085 PF01676 Metalloenzyme superfamily AMD29_RS06090 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD29_RS06100 PF00756 Putative esterase AMD29_RS06105 PF17770 Ribonuclease J C-terminal domain AMD29_RS06105 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD29_RS06105 PF00753 Metallo-beta-lactamase superfamily AMD29_RS06110 PF00005 ABC transporter AMD29_RS06110 PF08402 TOBE domain AMD29_RS06125 PF05670 NFACT protein RNA binding domain AMD29_RS06130 PF03306 Alpha-acetolactate decarboxylase AMD29_RS06135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD29_RS06135 PF00205 Thiamine pyrophosphate enzyme, central domain AMD29_RS06135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD29_RS06145 PF01594 AI-2E family transporter AMD29_RS06155 PF00293 NUDIX domain AMD29_RS06395 PF08346 AntA/AntB antirepressor AMD29_RS06395 PF10548 P22AR C-terminal domain AMD29_RS06405 PF00717 Peptidase S24-like AMD29_RS06405 PF01381 Helix-turn-helix AMD29_RS06415 PF05154 TM2 domain AMD29_RS06425 PF02278 Polysaccharide lyase family 8, super-sandwich domain AMD29_RS06425 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AMD29_RS06425 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AMD29_RS06430 PF16363 GDP-mannose 4,6 dehydratase AMD29_RS06435 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD29_RS06440 PF00483 Nucleotidyl transferase AMD29_RS06445 PF01266 FAD dependent oxidoreductase AMD29_RS06450 PF01784 NIF3 (NGG1p interacting factor 3) AMD29_RS06455 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AMD29_RS06465 PF00156 Phosphoribosyl transferase domain AMD29_RS06475 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AMD29_RS06475 PF17768 RecJ OB domain AMD29_RS06475 PF02272 DHHA1 domain AMD29_RS06475 PF01368 DHH family AMD29_RS06480 PF00106 short chain dehydrogenase AMD29_RS06485 PF12706 Beta-lactamase superfamily domain AMD29_RS06485 PF00753 Metallo-beta-lactamase superfamily AMD29_RS06515 PF11852 Domain of unknown function (DUF3372) AMD29_RS06515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD29_RS06515 PF18494 Pullulanase Ins domain AMD29_RS06515 PF03714 Bacterial pullanase-associated domain AMD29_RS06515 PF17967 Pullulanase N2 domain AMD29_RS06525 PF03167 Uracil DNA glycosylase superfamily AMD29_RS06530 PF01546 Peptidase family M20/M25/M40 AMD29_RS06535 PF00881 Nitroreductase family AMD29_RS06540 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD29_RS06545 PF01541 GIY-YIG catalytic domain AMD29_RS06545 PF08459 UvrC Helix-hairpin-helix N-terminal AMD29_RS06545 PF02151 UvrB/uvrC motif AMD29_RS06550 PF02677 Epoxyqueuosine reductase QueH AMD29_RS06555 PF01554 MatE AMD29_RS06590 PF13276 HTH-like domain AMD29_RS06590 PF00665 Integrase core domain AMD29_RS06590 PF13333 Integrase core domain AMD29_RS06600 PF01610 Transposase AMD29_RS06600 PF13683 Integrase core domain AMD29_RS06610 PF01297 Zinc-uptake complex component A periplasmic AMD29_RS06615 PF00082 Subtilase family AMD29_RS06615 PF02225 PA domain AMD29_RS06615 PF06280 Fn3-like domain AMD29_RS06635 PF14579 Helix-hairpin-helix motif AMD29_RS06635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD29_RS06635 PF00929 Exonuclease AMD29_RS06635 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD29_RS06635 PF11490 DNA polymerase III polC-type N-terminus II AMD29_RS06635 PF02811 PHP domain AMD29_RS06645 PF13495 Phage integrase, N-terminal SAM-like domain AMD29_RS06645 PF00589 Phage integrase family AMD29_RS06700 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD29_RS06700 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD29_RS06705 PF00466 Ribosomal protein L10 AMD29_RS06710 PF00004 ATPase family associated with various cellular activities (AAA) AMD29_RS06710 PF17871 AAA lid domain AMD29_RS06710 PF07724 AAA domain (Cdc48 subfamily) AMD29_RS06710 PF10431 C-terminal, D2-small domain, of ClpB protein AMD29_RS06715 PF02574 Homocysteine S-methyltransferase AMD29_RS06720 PF00324 Amino acid permease AMD29_RS06740 PF01926 50S ribosome-binding GTPase AMD29_RS06745 PF07724 AAA domain (Cdc48 subfamily) AMD29_RS06745 PF10431 C-terminal, D2-small domain, of ClpB protein AMD29_RS06745 PF06689 ClpX C4-type zinc finger AMD29_RS06755 PF00186 Dihydrofolate reductase AMD29_RS06760 PF00303 Thymidylate synthase AMD29_RS06765 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AMD29_RS06765 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AMD29_RS06770 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AMD29_RS06780 PF03006 Haemolysin-III related AMD29_RS06785 PF00781 Diacylglycerol kinase catalytic domain AMD29_RS06800 PF01070 FMN-dependent dehydrogenase AMD29_RS06805 PF00288 GHMP kinases N terminal domain AMD29_RS06805 PF08544 GHMP kinases C terminal AMD29_RS06815 PF00288 GHMP kinases N terminal domain AMD29_RS06815 PF08544 GHMP kinases C terminal AMD29_RS06815 PF10509 Galactokinase galactose-binding signature AMD29_RS06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS06820 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS06825 PF00072 Response regulator receiver domain AMD29_RS06825 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS06830 PF04607 Region found in RelA / SpoT proteins AMD29_RS06835 PF00005 ABC transporter AMD29_RS06835 PF00664 ABC transporter transmembrane region AMD29_RS06840 PF00005 ABC transporter AMD29_RS06840 PF00664 ABC transporter transmembrane region AMD29_RS06850 PF00149 Calcineurin-like phosphoesterase AMD29_RS06850 PF17936 Bacterial Ig domain AMD29_RS06850 PF02872 5'-nucleotidase, C-terminal domain AMD29_RS06855 PF01327 Polypeptide deformylase AMD29_RS06860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD29_RS06860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD29_RS06870 PF00005 ABC transporter AMD29_RS06870 PF00664 ABC transporter transmembrane region AMD29_RS06875 PF00664 ABC transporter transmembrane region AMD29_RS06875 PF00005 ABC transporter AMD29_RS06885 PF16326 ABC transporter C-terminal domain AMD29_RS06885 PF12848 ABC transporter AMD29_RS06885 PF00005 ABC transporter AMD29_RS06890 PF01743 Poly A polymerase head domain AMD29_RS06890 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD29_RS06890 PF13735 tRNA nucleotidyltransferase domain 2 putative AMD29_RS06895 PF02645 Uncharacterised protein, DegV family COG1307 AMD29_RS06915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS06915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS06920 PF00294 pfkB family carbohydrate kinase AMD29_RS06925 PF08220 DeoR-like helix-turn-helix domain AMD29_RS06925 PF00455 DeoR C terminal sensor domain AMD29_RS06940 PF02558 Ketopantoate reductase PanE/ApbA AMD29_RS06940 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD29_RS06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS06955 PF01746 tRNA (Guanine-1)-methyltransferase AMD29_RS06960 PF01782 RimM N-terminal domain AMD29_RS06960 PF05239 PRC-barrel domain AMD29_RS06985 PF00886 Ribosomal protein S16 AMD29_RS06990 PF02687 FtsX-like permease family AMD29_RS06990 PF12704 MacB-like periplasmic core domain AMD29_RS06995 PF00005 ABC transporter AMD29_RS07000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD29_RS07005 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD29_RS07005 PF02142 MGS-like domain AMD29_RS07005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD29_RS07010 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD29_RS07010 PF00117 Glutamine amidotransferase class-I AMD29_RS07015 PF00156 Phosphoribosyl transferase domain AMD29_RS07020 PF01479 S4 domain AMD29_RS07020 PF00849 RNA pseudouridylate synthase AMD29_RS07025 PF01252 Signal peptidase (SPase) II AMD29_RS07030 PF03466 LysR substrate binding domain AMD29_RS07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD29_RS07035 PF01016 Ribosomal L27 protein AMD29_RS07045 PF00829 Ribosomal prokaryotic L21 protein AMD29_RS07055 PF02926 THUMP domain AMD29_RS07055 PF02568 Thiamine biosynthesis protein (ThiI) AMD29_RS07060 PF00266 Aminotransferase class-V AMD29_RS07070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD29_RS07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS07075 PF06133 Control of competence regulator ComK, YlbF/YmcA AMD29_RS07080 PF01264 Chorismate synthase AMD29_RS07085 PF01761 3-dehydroquinate synthase AMD29_RS07090 PF01487 Type I 3-dehydroquinase AMD29_RS07095 PF10672 S-adenosylmethionine-dependent methyltransferase AMD29_RS07095 PF17785 PUA-like domain AMD29_RS07100 PF00884 Sulfatase AMD29_RS07105 PF00453 Ribosomal protein L20 AMD29_RS07110 PF01632 Ribosomal protein L35 AMD29_RS07115 PF05198 Translation initiation factor IF-3, N-terminal domain AMD29_RS07115 PF00707 Translation initiation factor IF-3, C-terminal domain AMD29_RS07120 PF02224 Cytidylate kinase AMD29_RS07140 PF07687 Peptidase dimerisation domain AMD29_RS07140 PF01546 Peptidase family M20/M25/M40 AMD29_RS07145 PF14667 Polysaccharide biosynthesis C-terminal domain AMD29_RS07145 PF01943 Polysaccharide biosynthesis protein AMD29_RS07150 PF08245 Mur ligase middle domain AMD29_RS07150 PF02875 Mur ligase family, glutamate ligase domain AMD29_RS07155 PF00005 ABC transporter AMD29_RS07160 PF01497 Periplasmic binding protein AMD29_RS07165 PF01032 FecCD transport family AMD29_RS07170 PF01032 FecCD transport family AMD29_RS07180 PF01368 DHH family AMD29_RS07180 PF02833 DHHA2 domain AMD29_RS07185 PF04055 Radical SAM superfamily AMD29_RS07190 PF01595 Cyclin M transmembrane N-terminal domain AMD29_RS07190 PF00571 CBS domain AMD29_RS07190 PF03471 Transporter associated domain AMD29_RS07195 PF06962 Putative rRNA methylase AMD29_RS07200 PF04055 Radical SAM superfamily AMD29_RS07200 PF16199 Radical_SAM C-terminal domain AMD29_RS07205 PF01569 PAP2 superfamily AMD29_RS07210 PF12822 ECF transporter, substrate-specific component AMD29_RS07245 PF08323 Starch synthase catalytic domain AMD29_RS07245 PF00534 Glycosyl transferases group 1 AMD29_RS07250 PF00535 Glycosyl transferase family 2 AMD29_RS07255 PF01943 Polysaccharide biosynthesis protein AMD29_RS07255 PF14667 Polysaccharide biosynthesis C-terminal domain AMD29_RS07265 PF00535 Glycosyl transferase family 2 AMD29_RS07270 PF00535 Glycosyl transferase family 2 AMD29_RS07270 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AMD29_RS07280 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD29_RS07285 PF04991 LicD family AMD29_RS07300 PF00535 Glycosyl transferase family 2 AMD29_RS07305 PF00535 Glycosyl transferase family 2 AMD29_RS07315 PF04321 RmlD substrate binding domain AMD29_RS07320 PF01883 Iron-sulfur cluster assembly protein AMD29_RS07325 PF04545 Sigma-70, region 4 AMD29_RS07325 PF04539 Sigma-70 region 3 AMD29_RS07325 PF00140 Sigma-70 factor, region 1.2 AMD29_RS07325 PF03979 Sigma-70 factor, region 1.1 AMD29_RS07325 PF04542 Sigma-70 region 2 AMD29_RS07330 PF10410 DnaB-helicase binding domain of primase AMD29_RS07330 PF08275 DNA primase catalytic core, N-terminal domain AMD29_RS07330 PF01807 CHC2 zinc finger AMD29_RS07335 PF01741 Large-conductance mechanosensitive channel, MscL AMD29_RS07340 PF01165 Ribosomal protein S21 AMD29_RS07350 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD29_RS07355 PF00909 Ammonium Transporter Family AMD29_RS07365 PF12368 Rhodanase C-terminal AMD29_RS07365 PF00581 Rhodanese-like domain AMD29_RS07365 PF17773 UPF0176 acylphosphatase like domain AMD29_RS07375 PF07690 Major Facilitator Superfamily AMD29_RS07380 PF00343 Carbohydrate phosphorylase AMD29_RS07385 PF02446 4-alpha-glucanotransferase AMD29_RS07390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMD29_RS07390 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS07400 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS07405 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS07410 PF00854 POT family AMD29_RS07415 PF13344 Haloacid dehalogenase-like hydrolase AMD29_RS07415 PF00293 NUDIX domain AMD29_RS07430 PF00534 Glycosyl transferases group 1 AMD29_RS07435 PF07516 SecA Wing and Scaffold domain AMD29_RS07435 PF07517 SecA DEAD-like domain AMD29_RS07435 PF01043 SecA preprotein cross-linking domain AMD29_RS07445 PF16929 Accessory Sec system GspB-transporter AMD29_RS07450 PF16993 Accessory Sec system protein Asp1 AMD29_RS07455 PF00344 SecY translocase AMD29_RS07460 PF01501 Glycosyl transferase family 8 AMD29_RS07460 PF08759 Glycosyltransferase GT-D fold AMD29_RS07465 PF00535 Glycosyl transferase family 2 AMD29_RS07465 PF01501 Glycosyl transferase family 8 AMD29_RS07470 PF01501 Glycosyl transferase family 8 AMD29_RS07470 PF08759 Glycosyltransferase GT-D fold AMD29_RS07475 PF01501 Glycosyl transferase family 8 AMD29_RS07475 PF00535 Glycosyl transferase family 2 AMD29_RS07480 PF08759 Glycosyltransferase GT-D fold AMD29_RS07480 PF01501 Glycosyl transferase family 8 AMD29_RS07505 PF04851 Type III restriction enzyme, res subunit AMD29_RS07505 PF17757 UvrB interaction domain AMD29_RS07505 PF02151 UvrB/uvrC motif AMD29_RS07505 PF12344 Ultra-violet resistance protein B AMD29_RS07505 PF00271 Helicase conserved C-terminal domain AMD29_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS07520 PF00005 ABC transporter AMD29_RS07535 PF09269 Domain of unknown function (DUF1967) AMD29_RS07535 PF01018 GTP1/OBG AMD29_RS07535 PF01926 50S ribosome-binding GTPase AMD29_RS07545 PF02073 Thermophilic metalloprotease (M29) AMD29_RS07555 PF01425 Amidase AMD29_RS07560 PF01479 S4 domain AMD29_RS07560 PF00849 RNA pseudouridylate synthase AMD29_RS07565 PF00248 Aldo/keto reductase family AMD29_RS07570 PF00881 Nitroreductase family AMD29_RS07575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD29_RS07580 PF00535 Glycosyl transferase family 2 AMD29_RS07585 PF00324 Amino acid permease AMD29_RS07590 PF01668 SmpB protein AMD29_RS07595 PF17876 Cold shock domain AMD29_RS07595 PF00575 S1 RNA binding domain AMD29_RS07595 PF00773 RNB domain AMD29_RS07595 PF08206 Ribonuclease B OB domain AMD29_RS07605 PF07690 Major Facilitator Superfamily AMD29_RS07605 PF00083 Sugar (and other) transporter AMD29_RS07615 PF13732 Domain of unknown function (DUF4162) AMD29_RS07615 PF00005 ABC transporter AMD29_RS07620 PF01121 Dephospho-CoA kinase AMD29_RS07625 PF06827 Zinc finger found in FPG and IleRS AMD29_RS07625 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD29_RS07625 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD29_RS07630 PF01381 Helix-turn-helix AMD29_RS07665 PF01926 50S ribosome-binding GTPase AMD29_RS07665 PF07650 KH domain AMD29_RS07670 PF01219 Prokaryotic diacylglycerol kinase AMD29_RS07675 PF02130 Uncharacterized protein family UPF0054 AMD29_RS07685 PF13344 Haloacid dehalogenase-like hydrolase AMD29_RS07685 PF00293 NUDIX domain AMD29_RS07695 PF02562 PhoH-like protein AMD29_RS07700 PF06100 MCRA family AMD29_RS07705 PF06855 YozE SAM-like fold AMD29_RS07710 PF01625 Peptide methionine sulfoxide reductase AMD29_RS07720 PF01765 Ribosome recycling factor AMD29_RS07725 PF00696 Amino acid kinase family AMD29_RS07730 PF00005 ABC transporter AMD29_RS07735 PF00005 ABC transporter AMD29_RS07735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD29_RS07740 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD29_RS07740 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS07745 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS07750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD29_RS07755 PF00687 Ribosomal protein L1p/L10e family AMD29_RS07760 PF00298 Ribosomal protein L11, RNA binding domain AMD29_RS07760 PF03946 Ribosomal protein L11, N-terminal domain AMD29_RS07765 PF07690 Major Facilitator Superfamily AMD29_RS07770 PF01546 Peptidase family M20/M25/M40 AMD29_RS07770 PF07687 Peptidase dimerisation domain AMD29_RS07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD29_RS07775 PF03466 LysR substrate binding domain AMD29_RS07780 PF00425 chorismate binding enzyme AMD29_RS07780 PF04715 Anthranilate synthase component I, N terminal region AMD29_RS07785 PF09397 Ftsk gamma domain AMD29_RS07785 PF17854 FtsK alpha domain AMD29_RS07785 PF01580 FtsK/SpoIIIE family AMD29_RS07790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD29_RS07795 PF00950 ABC 3 transport family AMD29_RS07800 PF00005 ABC transporter AMD29_RS07805 PF01297 Zinc-uptake complex component A periplasmic AMD29_RS07815 PF01048 Phosphorylase superfamily AMD29_RS07825 PF00293 NUDIX domain AMD29_RS07830 PF14602 Hexapeptide repeat of succinyl-transferase AMD29_RS07830 PF12804 MobA-like NTP transferase domain AMD29_RS07830 PF00132 Bacterial transferase hexapeptide (six repeats) AMD29_RS07845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD29_RS07845 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD29_RS07885 PF00535 Glycosyl transferase family 2 AMD29_RS07910 PF05525 Branched-chain amino acid transport protein AMD29_RS07915 PF09334 tRNA synthetases class I (M) AMD29_RS07915 PF01588 Putative tRNA binding domain AMD29_RS07920 PF03848 Tellurite resistance protein TehB AMD29_RS07920 PF09313 Domain of unknown function (DUF1971) AMD29_RS07930 PF02378 Phosphotransferase system, EIIC AMD29_RS07940 PF03372 Endonuclease/Exonuclease/phosphatase family AMD29_RS07945 PF03960 ArsC family AMD29_RS07950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD29_RS07950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD29_RS07955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD29_RS07955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD29_RS07965 PF00266 Aminotransferase class-V AMD29_RS07970 PF03932 CutC family AMD29_RS07975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD29_RS07980 PF06156 Initiation control protein YabA AMD29_RS07985 PF09115 DNA polymerase III, delta subunit, C terminal AMD29_RS07990 PF02223 Thymidylate kinase AMD29_RS07995 PF00571 CBS domain AMD29_RS08000 PF00005 ABC transporter AMD29_RS08005 PF00005 ABC transporter AMD29_RS08005 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMD29_RS08010 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS08010 PF11862 Domain of unknown function (DUF3382) AMD29_RS08015 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS08020 PF13458 Periplasmic binding protein AMD29_RS08025 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AMD29_RS08030 PF00574 Clp protease AMD29_RS08040 PF00155 Aminotransferase class I and II AMD29_RS08045 PF00588 SpoU rRNA Methylase family AMD29_RS08050 PF13520 Amino acid permease AMD29_RS08055 PF02254 TrkA-N domain AMD29_RS08055 PF02080 TrkA-C domain AMD29_RS08060 PF02386 Cation transport protein AMD29_RS08065 PF01809 Putative membrane protein insertion efficiency factor AMD29_RS08070 PF00849 RNA pseudouridylate synthase AMD29_RS08070 PF01479 S4 domain AMD29_RS08075 PF04079 Segregation and condensation complex subunit ScpB AMD29_RS08080 PF02616 Segregation and condensation protein ScpA AMD29_RS08085 PF00589 Phage integrase family AMD29_RS08100 PF01725 Ham1 family AMD29_RS08105 PF01177 Asp/Glu/Hydantoin racemase AMD29_RS08110 PF03672 Uncharacterised protein family (UPF0154) AMD29_RS08120 PF08279 HTH domain AMD29_RS08120 PF02829 3H domain AMD29_RS08125 PF01027 Inhibitor of apoptosis-promoting Bax1 AMD29_RS08135 PF00588 SpoU rRNA Methylase family AMD29_RS08135 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD29_RS08140 PF00708 Acylphosphatase AMD29_RS08145 PF02096 60Kd inner membrane protein AMD29_RS08150 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS08155 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD29_RS08160 PF01425 Amidase AMD29_RS08165 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD29_RS08165 PF03449 Transcription elongation factor, N-terminal AMD29_RS08170 PF02618 YceG-like family AMD29_RS08180 PF02875 Mur ligase family, glutamate ligase domain AMD29_RS08180 PF08245 Mur ligase middle domain AMD29_RS08180 PF01225 Mur ligase family, catalytic domain AMD29_RS08190 PF00271 Helicase conserved C-terminal domain AMD29_RS08190 PF00176 SNF2 family N-terminal domain AMD29_RS08190 PF04434 SWIM zinc finger AMD29_RS08195 PF01926 50S ribosome-binding GTPase AMD29_RS08195 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD29_RS08200 PF01695 IstB-like ATP binding protein AMD29_RS08200 PF07319 Primosomal protein DnaI N-terminus AMD29_RS08210 PF03477 ATP cone domain AMD29_RS08215 PF18719 ArlS sensor domain AMD29_RS08215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS08215 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS08220 PF00072 Response regulator receiver domain AMD29_RS08220 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS08230 PF01435 Peptidase family M48 AMD29_RS08235 PF04011 LemA family AMD29_RS08240 PF02527 rRNA small subunit methyltransferase G AMD29_RS08245 PF02386 Cation transport protein AMD29_RS08250 PF02254 TrkA-N domain AMD29_RS08250 PF02080 TrkA-C domain AMD29_RS08260 PF12558 ATP-binding cassette cobalt transporter AMD29_RS08260 PF00005 ABC transporter AMD29_RS08265 PF07155 ECF-type riboflavin transporter, S component AMD29_RS08270 PF00375 Sodium:dicarboxylate symporter family AMD29_RS08275 PF05525 Branched-chain amino acid transport protein AMD29_RS08280 PF13823 Alcohol dehydrogenase GroES-associated AMD29_RS08280 PF00107 Zinc-binding dehydrogenase AMD29_RS08280 PF08240 Alcohol dehydrogenase GroES-like domain AMD29_RS08285 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS08290 PF09383 NIL domain AMD29_RS08290 PF00005 ABC transporter AMD29_RS08295 PF07687 Peptidase dimerisation domain AMD29_RS08295 PF01546 Peptidase family M20/M25/M40 AMD29_RS08300 PF03180 NLPA lipoprotein AMD29_RS08305 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD29_RS08310 PF07722 Peptidase C26 AMD29_RS08315 PF01709 Transcriptional regulator AMD29_RS08320 PF02733 Dak1 domain AMD29_RS08325 PF14278 Transcriptional regulator C-terminal region AMD29_RS08325 PF00440 Bacterial regulatory proteins, tetR family AMD29_RS08330 PF02733 Dak1 domain AMD29_RS08335 PF02734 DAK2 domain AMD29_RS08340 PF03610 PTS system fructose IIA component AMD29_RS08345 PF00230 Major intrinsic protein AMD29_RS08355 PF07739 TipAS antibiotic-recognition domain AMD29_RS08355 PF13411 MerR HTH family regulatory protein AMD29_RS08360 PF05636 HIGH Nucleotidyl Transferase AMD29_RS08370 PF13649 Methyltransferase domain AMD29_RS08385 PF01966 HD domain AMD29_RS08390 PF01467 Cytidylyltransferase-like AMD29_RS08395 PF01985 CRS1 / YhbY (CRM) domain AMD29_RS08400 PF01926 50S ribosome-binding GTPase AMD29_RS08415 PF02934 GatB/GatE catalytic domain AMD29_RS08415 PF02637 GatB domain AMD29_RS08420 PF01425 Amidase AMD29_RS08425 PF02686 Glu-tRNAGln amidotransferase C subunit AMD29_RS08430 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD29_RS08430 PF00391 PEP-utilising enzyme, mobile domain AMD29_RS08430 PF02896 PEP-utilising enzyme, TIM barrel domain AMD29_RS08435 PF03618 Kinase/pyrophosphorylase AMD29_RS08440 PF08279 HTH domain AMD29_RS08440 PF00571 CBS domain AMD29_RS08445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD29_RS08445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD29_RS08445 PF00378 Enoyl-CoA hydratase/isomerase AMD29_RS08450 PF00857 Isochorismatase family AMD29_RS08455 PF08222 CodY helix-turn-helix domain AMD29_RS08455 PF06018 CodY GAF-like domain AMD29_RS08460 PF00155 Aminotransferase class I and II AMD29_RS08465 PF00582 Universal stress protein family AMD29_RS08475 PF00710 Asparaginase, N-terminal AMD29_RS08475 PF17763 Glutaminase/Asparaginase C-terminal domain AMD29_RS08480 PF08501 Shikimate dehydrogenase substrate binding domain AMD29_RS08480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD29_RS08485 PF00248 Aldo/keto reductase family AMD29_RS08490 PF00270 DEAD/DEAH box helicase AMD29_RS08490 PF17191 RecG wedge domain AMD29_RS08490 PF00271 Helicase conserved C-terminal domain AMD29_RS08495 PF05257 CHAP domain AMD29_RS08495 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD29_RS08500 PF01168 Alanine racemase, N-terminal domain AMD29_RS08500 PF00842 Alanine racemase, C-terminal domain AMD29_RS08505 PF01648 4'-phosphopantetheinyl transferase superfamily AMD29_RS08510 PF00793 DAHP synthetase I family AMD29_RS08515 PF02810 SEC-C motif AMD29_RS08515 PF07516 SecA Wing and Scaffold domain AMD29_RS08515 PF07517 SecA DEAD-like domain AMD29_RS08515 PF01043 SecA preprotein cross-linking domain AMD29_RS08520 PF01238 Phosphomannose isomerase type I AMD29_RS08525 PF00480 ROK family AMD29_RS08530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD29_RS08530 PF00367 phosphotransferase system, EIIB AMD29_RS08530 PF02378 Phosphotransferase system, EIIC AMD29_RS08535 PF08244 Glycosyl hydrolases family 32 C terminal AMD29_RS08535 PF00251 Glycosyl hydrolases family 32 N-terminal domain AMD29_RS08540 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS08545 PF01029 NusB family AMD29_RS08550 PF03780 Asp23 family, cell envelope-related function AMD29_RS08555 PF08207 Elongation factor P (EF-P) KOW-like domain AMD29_RS08555 PF01132 Elongation factor P (EF-P) OB domain AMD29_RS08555 PF09285 Elongation factor P, C-terminal AMD29_RS08575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD29_RS08590 PF07690 Major Facilitator Superfamily AMD29_RS08595 PF17755 UvrA DNA-binding domain AMD29_RS08595 PF17760 UvrA interaction domain AMD29_RS08595 PF00005 ABC transporter AMD29_RS08610 PF01084 Ribosomal protein S18 AMD29_RS08615 PF00436 Single-strand binding protein family AMD29_RS08620 PF01250 Ribosomal protein S6 AMD29_RS08625 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD29_RS08625 PF14815 NUDIX domain AMD29_RS08630 PF01381 Helix-turn-helix AMD29_RS08635 PF00085 Thioredoxin AMD29_RS08645 PF01713 Smr domain AMD29_RS08645 PF00488 MutS domain V AMD29_RS08660 PF01351 Ribonuclease HII AMD29_RS08660 PF11858 Domain of unknown function (DUF3378) AMD29_RS08665 PF10502 Signal peptidase, peptidase S26 AMD29_RS08670 PF13538 UvrD-like helicase C-terminal domain AMD29_RS08670 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AMD29_RS08670 PF14490 Helix-hairpin-helix containing domain AMD29_RS08680 PF11799 impB/mucB/samB family C-terminal domain AMD29_RS08680 PF11798 IMS family HHH motif AMD29_RS08680 PF00817 impB/mucB/samB family AMD29_RS08685 PF01228 Glycine radical AMD29_RS08685 PF02901 Pyruvate formate lyase-like AMD29_RS08690 PF01243 Pyridoxamine 5'-phosphate oxidase AMD29_RS08695 PF00144 Beta-lactamase AMD29_RS08710 PF00230 Major intrinsic protein AMD29_RS08720 PF07690 Major Facilitator Superfamily AMD29_RS08725 PF13545 Crp-like helix-turn-helix domain AMD29_RS08730 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD29_RS08730 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal AMD29_RS08730 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD29_RS08740 PF00348 Polyprenyl synthetase AMD29_RS08745 PF00664 ABC transporter transmembrane region AMD29_RS08745 PF00005 ABC transporter AMD29_RS08750 PF00664 ABC transporter transmembrane region AMD29_RS08750 PF00005 ABC transporter AMD29_RS08755 PF02322 Cytochrome bd terminal oxidase subunit II AMD29_RS08760 PF01654 Cytochrome bd terminal oxidase subunit I AMD29_RS08765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS08780 PF12161 HsdM N-terminal domain AMD29_RS08780 PF02384 N-6 DNA Methylase AMD29_RS08790 PF00456 Transketolase, thiamine diphosphate binding domain AMD29_RS08790 PF02780 Transketolase, C-terminal domain AMD29_RS08790 PF02779 Transketolase, pyrimidine binding domain AMD29_RS08800 PF00834 Ribulose-phosphate 3 epimerase family AMD29_RS08805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS08810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS08815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS08820 PF05043 Mga helix-turn-helix domain AMD29_RS08820 PF08279 HTH domain AMD29_RS08820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS08820 PF00874 PRD domain AMD29_RS08835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD29_RS08835 PF03466 LysR substrate binding domain AMD29_RS08840 PF00106 short chain dehydrogenase AMD29_RS08850 PF00248 Aldo/keto reductase family AMD29_RS08855 PF04229 GrpB protein AMD29_RS08860 PF02567 Phenazine biosynthesis-like protein AMD29_RS08870 PF02575 YbaB/EbfC DNA-binding family AMD29_RS08880 PF07739 TipAS antibiotic-recognition domain AMD29_RS08880 PF13411 MerR HTH family regulatory protein AMD29_RS08890 PF04394 Protein of unknown function, DUF536 AMD29_RS08890 PF08279 HTH domain AMD29_RS08905 PF00253 Ribosomal protein S14p/S29e AMD29_RS08915 PF00814 Glycoprotease family AMD29_RS08920 PF00583 Acetyltransferase (GNAT) family AMD29_RS08925 PF00814 Glycoprotease family AMD29_RS08930 PF07288 Protein of unknown function (DUF1447) AMD29_RS08935 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD29_RS08935 PF17770 Ribonuclease J C-terminal domain AMD29_RS08935 PF00753 Metallo-beta-lactamase superfamily AMD29_RS08940 PF01476 LysM domain AMD29_RS08940 PF05257 CHAP domain AMD29_RS08945 PF00120 Glutamine synthetase, catalytic domain AMD29_RS08945 PF03951 Glutamine synthetase, beta-Grasp domain AMD29_RS08950 PF13411 MerR HTH family regulatory protein AMD29_RS08960 PF00162 Phosphoglycerate kinase AMD29_RS08965 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD29_RS08970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD29_RS08970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD29_RS08975 PF14492 Elongation Factor G, domain II AMD29_RS08975 PF00679 Elongation factor G C-terminus AMD29_RS08975 PF00009 Elongation factor Tu GTP binding domain AMD29_RS08975 PF03144 Elongation factor Tu domain 2 AMD29_RS08975 PF03764 Elongation factor G, domain IV AMD29_RS08980 PF00177 Ribosomal protein S7p/S5e AMD29_RS08985 PF00164 Ribosomal protein S12/S23 AMD29_RS08990 PF00156 Phosphoribosyl transferase domain AMD29_RS08990 PF09182 Bacterial purine repressor, N-terminal AMD29_RS08995 PF01336 OB-fold nucleic acid binding domain AMD29_RS08995 PF01966 HD domain AMD29_RS09000 PF02646 RmuC family AMD29_RS09010 PF00834 Ribulose-phosphate 3 epimerase family AMD29_RS09015 PF03193 RsgA GTPase AMD29_RS09015 PF16745 RsgA N-terminal domain AMD29_RS09020 PF08241 Methyltransferase domain AMD29_RS09025 PF00398 Ribosomal RNA adenine dimethylase AMD29_RS09035 PF13331 Domain of unknown function (DUF4093) AMD29_RS09040 PF01026 TatD related DNase AMD29_RS09065 PF04914 DltD protein AMD29_RS09070 PF00550 Phosphopantetheine attachment site AMD29_RS09075 PF03062 MBOAT, membrane-bound O-acyltransferase family AMD29_RS09080 PF00501 AMP-binding enzyme AMD29_RS09080 PF13193 AMP-binding enzyme C-terminal domain AMD29_RS09090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09090 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS09095 PF00072 Response regulator receiver domain AMD29_RS09095 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS09100 PF00468 Ribosomal protein L34 AMD29_RS09105 PF07670 Nucleoside recognition AMD29_RS09110 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS09115 PF00005 ABC transporter AMD29_RS09115 PF00571 CBS domain AMD29_RS09120 PF09363 XFP C-terminal domain AMD29_RS09120 PF09364 XFP N-terminal domain AMD29_RS09120 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMD29_RS09140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD29_RS09140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD29_RS09150 PF03611 PTS system sugar-specific permease component AMD29_RS09155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD29_RS09155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD29_RS09165 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS09170 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD29_RS09175 PF00596 Class II Aldolase and Adducin N-terminal domain AMD29_RS09180 PF01261 Xylose isomerase-like TIM barrel AMD29_RS09185 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD29_RS09190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD29_RS09195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD29_RS09200 PF03611 PTS system sugar-specific permease component AMD29_RS09215 PF00709 Adenylosuccinate synthetase AMD29_RS09230 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD29_RS09230 PF18419 ATP-grasp-like domain AMD29_RS09230 PF04262 Glutamate-cysteine ligase AMD29_RS09245 PF01430 Hsp33 protein AMD29_RS09250 PF01207 Dihydrouridine synthase (Dus) AMD29_RS09255 PF01712 Deoxynucleoside kinase AMD29_RS09265 PF07724 AAA domain (Cdc48 subfamily) AMD29_RS09265 PF17871 AAA lid domain AMD29_RS09265 PF00004 ATPase family associated with various cellular activities (AAA) AMD29_RS09265 PF02861 Clp amino terminal domain, pathogenicity island component AMD29_RS09265 PF10431 C-terminal, D2-small domain, of ClpB protein AMD29_RS09270 PF05848 CtsR N-terminal HTH domain AMD29_RS09270 PF17727 CtsR C-terminal dimerization domain AMD29_RS09280 PF00889 Elongation factor TS AMD29_RS09285 PF00318 Ribosomal protein S2 AMD29_RS09290 PF00578 AhpC/TSA family AMD29_RS09295 PF13192 Thioredoxin domain AMD29_RS09295 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD29_RS09305 PF00999 Sodium/hydrogen exchanger family AMD29_RS09315 PF02016 LD-carboxypeptidase N-terminal domain AMD29_RS09315 PF17676 LD-carboxypeptidase C-terminal domain AMD29_RS09320 PF01431 Peptidase family M13 AMD29_RS09320 PF05649 Peptidase family M13 AMD29_RS09340 PF01327 Polypeptide deformylase AMD29_RS09345 PF00356 Bacterial regulatory proteins, lacI family AMD29_RS09370 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD29_RS09370 PF11490 DNA polymerase III polC-type N-terminus II AMD29_RS09370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD29_RS09370 PF14579 Helix-hairpin-helix motif AMD29_RS09370 PF02811 PHP domain AMD29_RS09370 PF14480 DNA polymerase III polC-type N-terminus I AMD29_RS09370 PF00929 Exonuclease AMD29_RS09375 PF01476 LysM domain AMD29_RS09375 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD29_RS09380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD29_RS09380 PF04073 Aminoacyl-tRNA editing domain AMD29_RS09380 PF03129 Anticodon binding domain AMD29_RS09385 PF02163 Peptidase family M50 AMD29_RS09385 PF13180 PDZ domain AMD29_RS09395 PF01255 Putative undecaprenyl diphosphate synthase AMD29_RS09400 PF02699 Preprotein translocase subunit AMD29_RS09410 PF00390 Malic enzyme, N-terminal domain AMD29_RS09410 PF03949 Malic enzyme, NAD binding domain AMD29_RS09415 PF03390 2-hydroxycarboxylate transporter family AMD29_RS09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09420 PF00989 PAS fold AMD29_RS09420 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMD29_RS09420 PF17203 Single cache domain 3 AMD29_RS09425 PF00072 Response regulator receiver domain AMD29_RS09430 PF16363 GDP-mannose 4,6 dehydratase AMD29_RS09435 PF00128 Alpha amylase, catalytic domain AMD29_RS09440 PF00005 ABC transporter AMD29_RS09440 PF03459 TOBE domain AMD29_RS09440 PF17912 MalK OB fold domain AMD29_RS09445 PF13556 PucR C-terminal helix-turn-helix domain AMD29_RS09450 PF01263 Aldose 1-epimerase AMD29_RS09455 PF01791 DeoC/LacD family aldolase AMD29_RS09460 PF00294 pfkB family carbohydrate kinase AMD29_RS09465 PF02502 Ribose/Galactose Isomerase AMD29_RS09470 PF02502 Ribose/Galactose Isomerase AMD29_RS09475 PF02973 Sialidase, N-terminal domain AMD29_RS09475 PF13088 BNR repeat-like domain AMD29_RS09475 PF04650 YSIRK type signal peptide AMD29_RS09500 PF00455 DeoR C terminal sensor domain AMD29_RS09500 PF08220 DeoR-like helix-turn-helix domain AMD29_RS09515 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD29_RS09520 PF04607 Region found in RelA / SpoT proteins AMD29_RS09520 PF02824 TGS domain AMD29_RS09520 PF13291 ACT domain AMD29_RS09525 PF00149 Calcineurin-like phosphoesterase AMD29_RS09525 PF02872 5'-nucleotidase, C-terminal domain AMD29_RS09530 PF07972 NrdI Flavodoxin like AMD29_RS09535 PF05343 M42 glutamyl aminopeptidase AMD29_RS09555 PF12833 Helix-turn-helix domain AMD29_RS09555 PF00072 Response regulator receiver domain AMD29_RS09560 PF06580 Histidine kinase AMD29_RS09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09565 PF03613 PTS system mannose/fructose/sorbose family IID component AMD29_RS09570 PF03609 PTS system sorbose-specific iic component AMD29_RS09575 PF03830 PTS system sorbose subfamily IIB component AMD29_RS09585 PF01757 Acyltransferase family AMD29_RS09585 PF00842 Alanine racemase, C-terminal domain AMD29_RS09585 PF01168 Alanine racemase, N-terminal domain AMD29_RS09600 PF00005 ABC transporter AMD29_RS09600 PF13732 Domain of unknown function (DUF4162) AMD29_RS09610 PF03412 Peptidase C39 family AMD29_RS09610 PF00664 ABC transporter transmembrane region AMD29_RS09610 PF00005 ABC transporter AMD29_RS09615 PF17203 Single cache domain 3 AMD29_RS09615 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMD29_RS09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09615 PF00989 PAS fold AMD29_RS09625 PF03372 Endonuclease/Exonuclease/phosphatase family AMD29_RS09630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD29_RS09630 PF00367 phosphotransferase system, EIIB AMD29_RS09630 PF02378 Phosphotransferase system, EIIC AMD29_RS09635 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS09635 PF16736 Single Cache-like AMD29_RS09635 PF00989 PAS fold AMD29_RS09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09640 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS09640 PF00072 Response regulator receiver domain AMD29_RS09645 PF01895 PhoU domain AMD29_RS09650 PF00005 ABC transporter AMD29_RS09655 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS09660 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS09665 PF12849 PBP superfamily domain AMD29_RS09675 PF04452 RNA methyltransferase AMD29_RS09690 PF13411 MerR HTH family regulatory protein AMD29_RS09690 PF07739 TipAS antibiotic-recognition domain AMD29_RS09700 PF00293 NUDIX domain AMD29_RS09715 PF00583 Acetyltransferase (GNAT) family AMD29_RS09720 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD29_RS09720 PF12002 MgsA AAA+ ATPase C terminal AMD29_RS09720 PF16193 AAA C-terminal domain AMD29_RS09745 PF00589 Phage integrase family AMD29_RS09755 PF02486 Replication initiation factor AMD29_RS09755 PF18106 Rolling Circle replication initiation protein N-terminal domain AMD29_RS09770 PF13280 WYL domain AMD29_RS09770 PF08279 HTH domain AMD29_RS09775 PF01965 DJ-1/PfpI family AMD29_RS09810 PF06013 Proteins of 100 residues with WXG AMD29_RS09850 PF00005 ABC transporter AMD29_RS09855 PF04439 Streptomycin adenylyltransferase AMD29_RS09885 PF00005 ABC transporter AMD29_RS09895 PF01381 Helix-turn-helix AMD29_RS09905 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD29_RS09910 PF03641 Possible lysine decarboxylase AMD29_RS09920 PF00581 Rhodanese-like domain AMD29_RS09925 PF07373 CAMP factor (Cfa) AMD29_RS09935 PF00465 Iron-containing alcohol dehydrogenase AMD29_RS09945 PF02219 Methylenetetrahydrofolate reductase AMD29_RS09945 PF02574 Homocysteine S-methyltransferase AMD29_RS09950 PF01717 Cobalamin-independent synthase, Catalytic domain AMD29_RS09950 PF08267 Cobalamin-independent synthase, N-terminal domain AMD29_RS09960 PF03591 AzlC protein AMD29_RS09975 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS09975 PF00672 HAMP domain AMD29_RS09985 PF08264 Anticodon-binding domain of tRNA AMD29_RS09985 PF00133 tRNA synthetases class I (I, L, M and V) AMD29_RS09985 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD29_RS09985 PF09334 tRNA synthetases class I (M) AMD29_RS09990 PF07690 Major Facilitator Superfamily AMD29_RS09995 PF01734 Patatin-like phospholipase AMD29_RS10010 PF01734 Patatin-like phospholipase AMD29_RS10015 PF02357 Transcription termination factor nusG AMD29_RS10015 PF00467 KOW motif AMD29_RS10020 PF01378 B domain AMD29_RS10020 PF00746 LPXTG cell wall anchor motif AMD29_RS10020 PF17573 GA-like domain AMD29_RS10030 PF00905 Penicillin binding protein transpeptidase domain AMD29_RS10030 PF00912 Transglycosylase AMD29_RS10035 PF00849 RNA pseudouridylate synthase AMD29_RS10035 PF01479 S4 domain AMD29_RS10045 PF01676 Metalloenzyme superfamily AMD29_RS10050 PF01791 DeoC/LacD family aldolase AMD29_RS10055 PF01773 Na+ dependent nucleoside transporter N-terminus AMD29_RS10055 PF07662 Na+ dependent nucleoside transporter C-terminus AMD29_RS10055 PF07670 Nucleoside recognition AMD29_RS10060 PF01048 Phosphorylase superfamily AMD29_RS10075 PF00118 TCP-1/cpn60 chaperonin family AMD29_RS10080 PF00166 Chaperonin 10 Kd subunit AMD29_RS10085 PF00005 ABC transporter AMD29_RS10090 PF02653 Branched-chain amino acid transport system / permease component AMD29_RS10105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD29_RS10110 PF03883 Peroxide stress protein YaaA AMD29_RS10125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD29_RS10135 PF03477 ATP cone domain AMD29_RS10135 PF13597 Anaerobic ribonucleoside-triphosphate reductase AMD29_RS10150 PF06949 Protein of unknown function (DUF1292) AMD29_RS10155 PF03652 Holliday junction resolvase AMD29_RS10160 PF06135 IreB regulatory phosphoprotein AMD29_RS10165 PF03960 ArsC family AMD29_RS10170 PF00154 recA bacterial DNA recombination protein AMD29_RS10175 PF00994 Probable molybdopterin binding domain AMD29_RS10175 PF18146 Damage-inducible protein CinA KH domain AMD29_RS10175 PF02464 Competence-damaged protein AMD29_RS10180 PF03352 Methyladenine glycosylase AMD29_RS10185 PF07499 RuvA, C-terminal domain AMD29_RS10185 PF01330 RuvA N terminal domain AMD29_RS10195 PF01119 DNA mismatch repair protein, C-terminal domain AMD29_RS10195 PF08676 MutL C terminal dimerisation domain AMD29_RS10200 PF00313 'Cold-shock' DNA-binding domain AMD29_RS10205 PF05192 MutS domain III AMD29_RS10205 PF00488 MutS domain V AMD29_RS10205 PF05190 MutS family domain IV AMD29_RS10205 PF01624 MutS domain I AMD29_RS10205 PF05188 MutS domain II AMD29_RS10210 PF02863 Arginine repressor, C-terminal domain AMD29_RS10210 PF01316 Arginine repressor, DNA binding domain AMD29_RS10215 PF00750 tRNA synthetases class I (R) AMD29_RS10215 PF03485 Arginyl tRNA synthetase N terminal domain AMD29_RS10215 PF05746 DALR anticodon binding domain AMD29_RS10225 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AMD29_RS10225 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AMD29_RS10230 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AMD29_RS10230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AMD29_RS10235 PF02938 GAD domain AMD29_RS10235 PF01336 OB-fold nucleic acid binding domain AMD29_RS10235 PF00152 tRNA synthetases class II (D, K and N) AMD29_RS10240 PF03129 Anticodon binding domain AMD29_RS10240 PF13393 Histidyl-tRNA synthetase AMD29_RS10245 PF01783 Ribosomal L32p protein family AMD29_RS10250 PF00471 Ribosomal protein L33 AMD29_RS10305 PF00589 Phage integrase family AMD29_RS10305 PF14659 Phage integrase, N-terminal SAM-like domain AMD29_RS10315 PF01022 Bacterial regulatory protein, arsR family AMD29_RS10380 PF00486 Transcriptional regulatory protein, C terminal AMD29_RS10380 PF00072 Response regulator receiver domain AMD29_RS10385 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS10385 PF18719 ArlS sensor domain AMD29_RS10390 PF03606 C4-dicarboxylate anaerobic carrier AMD29_RS10395 PF00696 Amino acid kinase family AMD29_RS10400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD29_RS10400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD29_RS10405 PF00512 His Kinase A (phospho-acceptor) domain AMD29_RS10405 PF00989 PAS fold AMD29_RS10405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD29_RS10410 PF08664 YcbB domain AMD29_RS10410 PF00072 Response regulator receiver domain AMD29_RS10415 PF00571 CBS domain AMD29_RS10415 PF00005 ABC transporter AMD29_RS10420 PF00528 Binding-protein-dependent transport system inner membrane component AMD29_RS10425 PF09924 Uncharacterised conserved protein (DUF2156) AMD29_RS10425 PF03706 Lysylphosphatidylglycerol synthase TM region AMD29_RS10430 PF00561 alpha/beta hydrolase fold AMD29_RS10435 PF06993 Protein of unknown function (DUF1304) AMD29_RS10440 PF01061 ABC-2 type transporter AMD29_RS10535 PF05154 TM2 domain AMD29_RS10555 PF14659 Phage integrase, N-terminal SAM-like domain AMD29_RS10555 PF00589 Phage integrase family AMD29_RS10560 PF01479 S4 domain AMD29_RS10560 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD29_RS10570 PF00772 DnaB-like helicase N terminal domain AMD29_RS10570 PF03796 DnaB-like helicase C terminal domain AMD29_RS10575 PF01281 Ribosomal protein L9, N-terminal domain AMD29_RS10575 PF03948 Ribosomal protein L9, C-terminal domain AMD29_RS10580 PF02272 DHHA1 domain AMD29_RS10580 PF01368 DHH family AMD29_RS10585 PF01134 Glucose inhibited division protein A AMD29_RS10585 PF13932 GidA associated domain AMD29_RS10590 PF01914 MarC family integral membrane protein AMD29_RS10600 PF01842 ACT domain AMD29_RS10600 PF03315 Serine dehydratase beta chain AMD29_RS10605 PF03313 Serine dehydratase alpha chain AMD29_RS10610 PF06737 Transglycosylase-like domain AMD29_RS10615 PF05257 CHAP domain AMD29_RS10615 PF01476 LysM domain AMD29_RS10620 PF02361 Cobalt transport protein AMD29_RS10625 PF00005 ABC transporter AMD29_RS10630 PF00005 ABC transporter AMD29_RS10635 PF01066 CDP-alcohol phosphatidyltransferase AMD29_RS10640 PF05193 Peptidase M16 inactive domain AMD29_RS10640 PF00675 Insulinase (Peptidase family M16) AMD29_RS10645 PF05193 Peptidase M16 inactive domain AMD29_RS10655 PF02463 RecF/RecN/SMC N terminal domain AMD29_RS10660 PF06800 Sugar transport protein AMD29_RS10670 PF00571 CBS domain AMD29_RS10670 PF00478 IMP dehydrogenase / GMP reductase domain AMD29_RS10675 PF02863 Arginine repressor, C-terminal domain AMD29_RS10675 PF01316 Arginine repressor, DNA binding domain AMD29_RS10680 PF00027 Cyclic nucleotide-binding domain AMD29_RS10680 PF13545 Crp-like helix-turn-helix domain AMD29_RS10695 PF13673 Acetyltransferase (GNAT) domain AMD29_RS10700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD29_RS10700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD29_RS10705 PF13520 Amino acid permease AMD29_RS10710 PF00696 Amino acid kinase family AMD29_RS10715 PF00579 tRNA synthetases class I (W and Y) AMD29_RS10725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AMD29_RS10725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AMD29_RS10730 PF12848 ABC transporter AMD29_RS10730 PF00005 ABC transporter AMD29_RS10735 PF09586 Bacterial membrane protein YfhO AMD29_RS10755 PF02590 Predicted SPOUT methyltransferase AMD29_RS10760 PF13180 PDZ domain AMD29_RS10765 PF02195 ParB-like nuclease domain AMD29_RS10765 PF17762 HTH domain found in ParB protein AMD29_RS10770 PF08299 Bacterial dnaA protein helix-turn-helix AMD29_RS10770 PF00308 Bacterial dnaA protein AMD29_RS10775 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD29_RS10775 PF02767 DNA polymerase III beta subunit, central domain AMD29_RS10775 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD29_RS10780 PF00781 Diacylglycerol kinase catalytic domain AMD29_RS10790 PF06071 Protein of unknown function (DUF933) AMD29_RS10790 PF01926 50S ribosome-binding GTPase AMD29_RS10795 PF01195 Peptidyl-tRNA hydrolase AMD29_RS10800 PF02559 CarD-like/TRCF domain AMD29_RS10800 PF00270 DEAD/DEAH box helicase AMD29_RS10800 PF00271 Helicase conserved C-terminal domain AMD29_RS10800 PF03461 TRCF domain AMD29_RS10800 PF17757 UvrB interaction domain AMD29_RS10805 PF01479 S4 domain AMD29_RS10825 PF01171 PP-loop family AMD29_RS10830 PF00156 Phosphoribosyl transferase domain AMD29_RS10835 PF17862 AAA+ lid domain AMD29_RS10835 PF06480 FtsH Extracellular AMD29_RS10835 PF01434 Peptidase family M41 AMD29_RS10835 PF00004 ATPase family associated with various cellular activities (AAA)