locus-tag	class	description
AMD29_RS00175	COG0436	Aminotransferase
AMD29_RS00195	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD29_RS00205	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMD29_RS00220	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMD29_RS00255	COG1175	transmembrane transport
AMD29_RS00260	COG0395	ABC-type sugar transport system, permease component
AMD29_RS00275	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMD29_RS00285	COG3458	cephalosporin-C deacetylase activity
AMD29_RS00300	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMD29_RS00315	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AMD29_RS00330	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMD29_RS00340	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMD29_RS00340	COG2755	lipolytic protein G-D-S-L family
AMD29_RS00345	COG1012	belongs to the aldehyde dehydrogenase family
AMD29_RS00345	COG1454	alcohol dehydrogenase
AMD29_RS00350	COG1064	alcohol dehydrogenase
AMD29_RS00360	COG0534	Mate efflux family protein
AMD29_RS00470	COG0201	protein transport
AMD29_RS00485	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AMD29_RS00495	COG0202	RNA polymerase activity
AMD29_RS00645	COG3561	AntA/AntB antirepressor
AMD29_RS00675	COG0556	nucleotide-excision repair
AMD29_RS00760	COG1783	phage Terminase large subunit
AMD29_RS00895	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD29_RS00910	COG0443	Heat shock 70 kDa protein
AMD29_RS00920	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMD29_RS00930	COG0351	phosphomethylpyrimidine kinase
AMD29_RS00935	COG4720	Psort location CytoplasmicMembrane, score
AMD29_RS00945	COG0668	transmembrane transport
AMD29_RS00975	COG0756	dUTP diphosphatase activity
AMD29_RS00990	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD29_RS01005	COG1879	ABC-type sugar transport system periplasmic component
AMD29_RS01010	COG1172	Belongs to the binding-protein-dependent transport system permease family
AMD29_RS01025	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AMD29_RS01030	COG1609	Transcriptional regulator
AMD29_RS01035	COG0577	efflux transmembrane transporter activity
AMD29_RS01040	COG1136	(ABC) transporter
AMD29_RS01045	COG0745	RESPONSE REGULATOR receiver
AMD29_RS01050	COG5002	protein histidine kinase activity
AMD29_RS01065	COG0191	fructose-bisphosphate aldolase activity
AMD29_RS01085	COG1461	Dihydroxyacetone kinase
AMD29_RS01125	COG1126	abc transporter atp-binding protein
AMD29_RS01130	COG0765	amino acid transport
AMD29_RS01150	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMD29_RS01160	COG0719	Fe-S assembly protein
AMD29_RS01165	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMD29_RS01175	COG0719	Fe-S assembly protein
AMD29_RS01180	COG1686	Belongs to the peptidase S11 family
AMD29_RS01185	COG1686	Belongs to the peptidase S11 family
AMD29_RS01190	COG4166	transmembrane transport
AMD29_RS01195	COG0601	transmembrane transport
AMD29_RS01200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD29_RS01205	COG0444	Belongs to the ABC transporter superfamily
AMD29_RS01210	COG4608	Belongs to the ABC transporter superfamily
AMD29_RS01250	COG1121	(ABC) transporter
AMD29_RS01255	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMD29_RS01270	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD29_RS01270	COG4499	WXG100 protein secretion system (Wss), protein YukC
AMD29_RS01290	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMD29_RS01295	COG1459	type II secretion system
AMD29_RS01350	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMD29_RS01355	COG1363	Peptidase, m42
AMD29_RS01370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AMD29_RS01375	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD29_RS01390	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD29_RS01410	COG1346	cytolysis
AMD29_RS01420	COG0601	transmembrane transport
AMD29_RS01425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD29_RS01430	COG1122	ATPase activity
AMD29_RS01440	COG1263	PTS System
AMD29_RS01440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMD29_RS01445	COG0366	Alpha amylase catalytic
AMD29_RS01450	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD29_RS01465	COG3959	Transketolase, thiamine diphosphate binding domain
AMD29_RS01470	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMD29_RS01475	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMD29_RS01495	COG1045	serine acetyltransferase
AMD29_RS01510	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
AMD29_RS01530	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMD29_RS01540	COG4974	Belongs to the 'phage' integrase family
AMD29_RS01645	COG1396	sequence-specific DNA binding
AMD29_RS01650	COG2814	Major facilitator Superfamily
AMD29_RS01660	COG1732	Glycine betaine
AMD29_RS01795	COG0519	Catalyzes the synthesis of GMP from XMP
AMD29_RS01840	COG1695	Transcriptional regulator
AMD29_RS01855	COG1755	Isoprenylcysteine carboxyl methyltransferase
AMD29_RS01895	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD29_RS01900	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMD29_RS01920	COG1131	(ABC) transporter
AMD29_RS01930	COG2190	(PTS) system
AMD29_RS01930	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMD29_RS01930	COG1263	PTS System
AMD29_RS01935	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMD29_RS01955	COG0768	penicillin binding
AMD29_RS01965	COG0513	Belongs to the DEAD box helicase family
AMD29_RS01980	COG1126	abc transporter atp-binding protein
AMD29_RS01990	COG0492	ferredoxin-NADP+ reductase activity
AMD29_RS01995	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AMD29_RS02005	COG3579	cysteine-type endopeptidase activity
AMD29_RS02010	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD29_RS02035	COG0116	Belongs to the methyltransferase superfamily
AMD29_RS02045	COG1854	S-ribosylhomocysteine lyase activity
AMD29_RS02050	COG1418	mRNA catabolic process
AMD29_RS02050	COG4372	Transposase
AMD29_RS02055	COG1131	(ABC) transporter
AMD29_RS02065	COG4585	Histidine kinase
AMD29_RS02070	COG2197	response regulator
AMD29_RS02080	COG0194	GDP metabolic process
AMD29_RS02090	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMD29_RS02095	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AMD29_RS02100	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMD29_RS02100	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD29_RS02110	COG0515	serine threonine protein kinase
AMD29_RS02110	COG2815	serine threonine protein kinase
AMD29_RS02120	COG4585	Histidine kinase
AMD29_RS02125	COG2197	response regulator
AMD29_RS02135	COG1098	S1 RNA binding domain
AMD29_RS02140	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AMD29_RS02145	COG1349	DNA-binding transcription factor activity
AMD29_RS02155	COG1447	Phosphotransferase system cellobiose-specific component IIA
AMD29_RS02165	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AMD29_RS02170	COG1882	Formate acetyltransferase
AMD29_RS02190	COG1739	Uncharacterized protein family UPF0029
AMD29_RS02195	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
AMD29_RS02200	COG1040	competence protein
AMD29_RS02235	COG0527	aspartate kinase activity
AMD29_RS02240	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AMD29_RS02245	COG1024	Enoyl-CoA hydratase
AMD29_RS02255	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AMD29_RS02265	COG2070	2-Nitropropane dioxygenase
AMD29_RS02270	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMD29_RS02275	COG1028	Short-chain dehydrogenase reductase Sdr
AMD29_RS02280	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMD29_RS02295	COG0439	Biotin carboxylase
AMD29_RS02315	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMD29_RS02330	COG3716	PTS system mannose fructose sorbose family IID component
AMD29_RS02335	COG3715	PTS system
AMD29_RS02345	COG0561	phosphatase activity
AMD29_RS02360	COG2252	PERMEase
AMD29_RS02365	COG0802	atpase or kinase
AMD29_RS02375	COG1316	TRANSCRIPTIONal
AMD29_RS02385	COG0537	adenosine 5'-monophosphoramidase activity
AMD29_RS02400	COG1131	(ABC) transporter
AMD29_RS02405	COG4473	ABC transporter
AMD29_RS02415	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMD29_RS02430	COG0195	Participates in both transcription termination and antitermination
AMD29_RS02435	COG2740	Nucleic-acid-binding protein implicated in transcription termination
AMD29_RS02445	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMD29_RS02450	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMD29_RS02475	COG2860	membrane
AMD29_RS02485	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD29_RS02485	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AMD29_RS02490	COG1832	CoA-binding protein
AMD29_RS02510	COG5002	protein histidine kinase activity
AMD29_RS02530	COG1268	BioY protein
AMD29_RS02535	COG1234	tRNA 3'-trailer cleavage
AMD29_RS02550	COG0166	Belongs to the GPI family
AMD29_RS02555	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMD29_RS02560	COG0705	Rhomboid family
AMD29_RS02560	COG0457	Tetratricopeptide repeat
AMD29_RS02565	COG1744	ABC transporter substrate-binding protein PnrA-like
AMD29_RS02570	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMD29_RS02585	COG0706	membrane insertase activity
AMD29_RS02645	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMD29_RS02655	COG2153	protein acetylation
AMD29_RS02665	COG1216	Glycosyl transferase, family 2
AMD29_RS02665	COG1442	glycosyl transferase family 8
AMD29_RS02700	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMD29_RS02710	COG0789	Transcriptional regulator
AMD29_RS02720	COG0656	L-ascorbic acid biosynthetic process
AMD29_RS02765	COG2226	methyltransferase
AMD29_RS02775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD29_RS02780	COG3414	Phosphotransferase system galactitol-specific IIB component
AMD29_RS02785	COG3775	system Galactitol-specific IIC component
AMD29_RS02790	COG0235	Class ii aldolase
AMD29_RS02800	COG3775	system Galactitol-specific IIC component
AMD29_RS02805	COG3414	Phosphotransferase system galactitol-specific IIB component
AMD29_RS02810	COG2207	Transcriptional regulator
AMD29_RS02830	COG1175	transmembrane transport
AMD29_RS02845	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AMD29_RS02855	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMD29_RS02860	COG2017	converts alpha-aldose to the beta-anomer
AMD29_RS02920	COG1518	maintenance of DNA repeat elements
AMD29_RS02925	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
AMD29_RS02930	COG0673	inositol 2-dehydrogenase activity
AMD29_RS02940	COG2315	Protein conserved in bacteria
AMD29_RS02955	COG0742	ribosomal rna small subunit methyltransferase
AMD29_RS02970	COG3480	Lon protease (S16) C-terminal proteolytic domain
AMD29_RS02975	COG0737	Belongs to the 5'-nucleotidase family
AMD29_RS02980	COG4470	Protein conserved in bacteria
AMD29_RS02995	COG1132	(ABC) transporter
AMD29_RS03000	COG1132	(ABC) transporter
AMD29_RS03005	COG0512	Glutamine amidotransferase of anthranilate synthase
AMD29_RS03010	COG1268	BioY protein
AMD29_RS03015	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMD29_RS03035	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMD29_RS03050	COG1940	carbohydrate kinase activity
AMD29_RS03055	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMD29_RS03060	COG1217	gtp-binding protein TYPA
AMD29_RS03070	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMD29_RS03095	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AMD29_RS03105	COG0762	integral membrane protein
AMD29_RS03110	COG2302	S4 RNA-binding domain
AMD29_RS03115	COG3599	regulation of cell shape
AMD29_RS03130	COG0494	nUDIX hydrolase
AMD29_RS03135	COG0542	response to heat
AMD29_RS03140	COG4703	Protein of unknown function (DUF1797)
AMD29_RS03145	COG0765	amino acid transport
AMD29_RS03150	COG1126	abc transporter atp-binding protein
AMD29_RS03155	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD29_RS03165	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMD29_RS03170	COG1570	exodeoxyribonuclease VII activity
AMD29_RS03175	COG1722	exodeoxyribonuclease VII activity
AMD29_RS03185	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AMD29_RS03190	COG1438	arginine binding
AMD29_RS03195	COG0497	DNA recombination
AMD29_RS03200	COG1307	EDD domain protein, DegV family
AMD29_RS03205	COG2755	lipolytic protein G-D-S-L family
AMD29_RS03250	COG1078	dGTPase activity
AMD29_RS03275	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AMD29_RS03285	COG2884	Cell division ATP-binding protein ftsE
AMD29_RS03290	COG2177	Part of the ABC transporter FtsEX involved in
AMD29_RS03310	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMD29_RS03310	COG1199	ATP-dependent helicase activity
AMD29_RS03315	COG0436	Aminotransferase
AMD29_RS03320	COG0017	Asparaginyl-tRNA synthetase
AMD29_RS03340	COG1660	Displays ATPase and GTPase activities
AMD29_RS03365	COG0254	rRNA binding
AMD29_RS03370	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AMD29_RS03375	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AMD29_RS03380	COG0716	FMN binding
AMD29_RS03385	COG1605	Chorismate mutase
AMD29_RS03385	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AMD29_RS03390	COG0038	chloride channel
AMD29_RS03395	COG0335	large ribosomal subunit rRNA binding
AMD29_RS03430	COG1136	(ABC) transporter
AMD29_RS03445	COG5002	protein histidine kinase activity
AMD29_RS03460	COG0772	Belongs to the SEDS family
AMD29_RS03480	COG0560	Phosphoserine phosphatase
AMD29_RS03495	COG0148	phosphopyruvate hydratase activity
AMD29_RS03515	COG1316	TRANSCRIPTIONal
AMD29_RS03530	COG3700	Belongs to the class B bacterial acid phosphatase family
AMD29_RS03630	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AMD29_RS03635	COG4555	ABC transporter
AMD29_RS03660	COG1028	Short-chain dehydrogenase reductase Sdr
AMD29_RS03665	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD29_RS03670	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMD29_RS03690	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMD29_RS03695	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMD29_RS03715	COG3064	Membrane
AMD29_RS03715	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMD29_RS03730	COG3590	peptidase
AMD29_RS03735	COG3590	peptidase
AMD29_RS03780	COG1136	(ABC) transporter
AMD29_RS03795	COG0586	Pfam SNARE associated Golgi protein
AMD29_RS03800	COG4619	ABC transporter
AMD29_RS03805	COG0390	transport system, permease component
AMD29_RS03815	COG0583	DNA-binding transcription factor activity
AMD29_RS03830	COG2211	Major facilitator Superfamily
AMD29_RS03840	COG3250	beta-galactosidase activity
AMD29_RS03845	COG2186	Transcriptional regulator
AMD29_RS03850	COG0800	Aldolase
AMD29_RS03865	COG1028	Short-chain dehydrogenase reductase Sdr
AMD29_RS03885	COG1609	Transcriptional regulator
AMD29_RS03900	COG0438	transferase activity, transferring glycosyl groups
AMD29_RS03925	COG0765	amino acid transport
AMD29_RS03930	COG0765	amino acid transport
AMD29_RS03935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMD29_RS03940	COG1126	abc transporter atp-binding protein
AMD29_RS03945	COG0745	RESPONSE REGULATOR receiver
AMD29_RS03950	COG5002	protein histidine kinase activity
AMD29_RS03955	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMD29_RS03960	COG2832	Protein of unknown function (DUF454)
AMD29_RS03970	COG1196	nuclear chromosome segregation
AMD29_RS03975	COG0561	phosphatase activity
AMD29_RS03980	COG0561	phosphatase activity
AMD29_RS03985	COG0552	protein localization to endoplasmic reticulum
AMD29_RS03990	COG3689	TIGRFAM TIGR03943 family protein
AMD29_RS03995	COG0701	Predicted permease
AMD29_RS04010	COG2183	response to ionizing radiation
AMD29_RS04015	COG3091	SprT-like family
AMD29_RS04020	COG1983	PspC domain protein
AMD29_RS04055	COG0826	peptidase U32
AMD29_RS04060	COG4443	Transcriptional Coactivator p15 (PC4)
AMD29_RS04070	COG1914	H( )-stimulated, divalent metal cation uptake system
AMD29_RS04085	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMD29_RS04085	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMD29_RS04110	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AMD29_RS04135	COG1164	Oligoendopeptidase f
AMD29_RS04145	COG0772	Belongs to the SEDS family
AMD29_RS04165	COG0768	penicillin binding
AMD29_RS04180	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMD29_RS04185	COG2223	nitrite transmembrane transporter activity
AMD29_RS04215	COG2011	ABC-type metal ion transport system permease component
AMD29_RS04220	COG1464	Belongs to the NlpA lipoprotein family
AMD29_RS04225	COG0513	Belongs to the DEAD box helicase family
AMD29_RS04235	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AMD29_RS04240	COG0204	Acyl-transferase
AMD29_RS04245	COG1596	polysaccharide export
AMD29_RS04245	COG1555	photosystem II stabilization
AMD29_RS04250	COG2333	competence protein COMEC
AMD29_RS04250	COG0658	competence protein
AMD29_RS04255	COG0561	phosphatase activity
AMD29_RS04260	COG1609	Transcriptional regulator
AMD29_RS04265	COG0657	acetylesterase activity
AMD29_RS04270	COG2226	methyltransferase
AMD29_RS04280	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMD29_RS04285	COG3711	transcriptional antiterminator
AMD29_RS04290	COG1263	PTS System
AMD29_RS04290	COG2190	(PTS) system
AMD29_RS04290	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMD29_RS04300	COG3835	regulator
AMD29_RS04305	COG1929	Belongs to the glycerate kinase type-1 family
AMD29_RS04310	COG2610	gluconate transmembrane transporter activity
AMD29_RS04320	COG1846	Transcriptional regulator
AMD29_RS04335	COG0363	glucosamine-6-phosphate deaminase activity
AMD29_RS04340	COG0435	Glutathione S-transferase
AMD29_RS04345	COG1187	pseudouridine synthase activity
AMD29_RS04365	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMD29_RS04370	COG4122	O-methyltransferase activity
AMD29_RS04380	COG4894	glucomannan catabolic process
AMD29_RS04395	COG1442	glycosyl transferase family 8
AMD29_RS04410	COG1476	TRANSCRIPTIONal
AMD29_RS04425	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD29_RS04430	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMD29_RS04435	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMD29_RS04450	COG1012	belongs to the aldehyde dehydrogenase family
AMD29_RS04455	COG0726	polysaccharide deacetylase
AMD29_RS04470	COG1956	GAF domain-containing protein
AMD29_RS04475	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMD29_RS04485	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AMD29_RS04485	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AMD29_RS04515	COG4721	ABC-type cobalt transport system, permease component
AMD29_RS04520	COG1122	ATPase activity
AMD29_RS04530	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AMD29_RS04560	COG4109	DRTGG domain
AMD29_RS04565	COG0024	Methionine aminopeptidase
AMD29_RS04575	COG2246	polysaccharide biosynthetic process
AMD29_RS04580	COG4708	membrane
AMD29_RS04590	COG1597	lipid kinase activity
AMD29_RS04595	COG1523	belongs to the glycosyl hydrolase 13 family
AMD29_RS04610	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AMD29_RS04690	COG0072	phenylalanine-tRNA ligase activity
AMD29_RS04690	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD29_RS04695	COG2321	neutral zinc metallopeptidase
AMD29_RS04720	COG0488	(ABC) transporter
AMD29_RS04725	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMD29_RS04730	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMD29_RS04730	COG0022	dehydrogenase e1 component
AMD29_RS04735	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMD29_RS04745	COG0095	Lipoate-protein ligase
AMD29_RS04750	COG3442	glutamine amidotransferase
AMD29_RS04755	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMD29_RS04760	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AMD29_RS04785	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMD29_RS04795	COG0647	UMP catabolic process
AMD29_RS04805	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
AMD29_RS04810	COG1518	maintenance of DNA repeat elements
AMD29_RS04815	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
AMD29_RS04835	COG0481	GTPase activity
AMD29_RS04845	COG1418	mRNA catabolic process
AMD29_RS04850	COG0456	acetyltransferase
AMD29_RS04860	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AMD29_RS04890	COG1131	(ABC) transporter
AMD29_RS04895	COG1725	Transcriptional regulator
AMD29_RS04905	COG0205	6-phosphofructokinase activity
AMD29_RS04910	COG0469	pyruvate kinase activity
AMD29_RS04920	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMD29_RS04925	COG2824	Alkylphosphonate utilization operon protein PhnA
AMD29_RS04930	COG0765	amino acid transport
AMD29_RS04935	COG1126	abc transporter atp-binding protein
AMD29_RS04950	COG1072	(Pantothenic acid kinase))
AMD29_RS04955	COG2813	Specifically methylates the guanine in position
AMD29_RS04965	COG1744	ABC transporter substrate-binding protein PnrA-like
AMD29_RS04970	COG3845	ABC transporter
AMD29_RS04975	COG4603	Belongs to the binding-protein-dependent transport system permease family
AMD29_RS04980	COG1079	Belongs to the binding-protein-dependent transport system permease family
AMD29_RS05000	COG3764	Sortase (surface protein transpeptidase)
AMD29_RS05005	COG0346	lactoylglutathione lyase activity
AMD29_RS05035	COG2188	Transcriptional regulator
AMD29_RS05050	COG1464	Belongs to the NlpA lipoprotein family
AMD29_RS05065	COG1136	(ABC) transporter
AMD29_RS05075	COG0745	RESPONSE REGULATOR receiver
AMD29_RS05080	COG5002	protein histidine kinase activity
AMD29_RS05085	COG4974	Belongs to the 'phage' integrase family
AMD29_RS05090	COG4166	transmembrane transport
AMD29_RS05105	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMD29_RS05110	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
AMD29_RS05115	COG5002	protein histidine kinase activity
AMD29_RS05120	COG0745	RESPONSE REGULATOR receiver
AMD29_RS05130	COG0704	Plays a role in the regulation of phosphate uptake
AMD29_RS05135	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMD29_RS05140	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMD29_RS05145	COG0581	inorganic phosphate transmembrane transporter activity
AMD29_RS05150	COG0573	inorganic phosphate transmembrane transporter activity
AMD29_RS05160	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMD29_RS05160	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
AMD29_RS05165	COG0483	inositol monophosphate 1-phosphatase activity
AMD29_RS05180	COG0196	riboflavin kinase activity
AMD29_RS05185	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMD29_RS05215	COG1136	(ABC) transporter
AMD29_RS05220	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMD29_RS05225	COG0758	DNA mediated transformation
AMD29_RS05230	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AMD29_RS05235	COG4604	ABC transporter, ATP-binding protein
AMD29_RS05240	COG4605	iron ion homeostasis
AMD29_RS05245	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMD29_RS05250	COG0110	maltose O-acetyltransferase activity
AMD29_RS05260	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AMD29_RS05265	COG1376	ErfK ybiS ycfS ynhG family protein
AMD29_RS05270	COG1966	Carbon starvation protein
AMD29_RS05275	COG3279	Response regulator of the LytR AlgR family
AMD29_RS05280	COG3275	phosphorelay sensor kinase activity
AMD29_RS05385	COG0505	Belongs to the CarA family
AMD29_RS05395	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMD29_RS05415	COG0488	(ABC) transporter
AMD29_RS05435	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMD29_RS05475	COG0095	Lipoate-protein ligase
AMD29_RS05485	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMD29_RS05490	COG4684	Psort location CytoplasmicMembrane, score
AMD29_RS05495	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMD29_RS05505	COG1132	(ABC) transporter
AMD29_RS05535	COG2890	protein-(glutamine-N5) methyltransferase activity
AMD29_RS05550	COG1942	4-Oxalocrotonate Tautomerase
AMD29_RS05565	COG1053	succinate dehydrogenase
AMD29_RS05565	COG3976	FMN-binding domain protein
AMD29_RS05565	COG0431	NADPH-dependent FMN reductase
AMD29_RS05575	COG2233	PERMEase
AMD29_RS05590	COG0477	Major facilitator Superfamily
AMD29_RS05605	COG4221	oxidoreductase activity
AMD29_RS05610	COG0280	phosphate acetyltransferase
AMD29_RS05615	COG0564	pseudouridine synthase activity
AMD29_RS05620	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMD29_RS05625	COG2357	RelA SpoT domain protein
AMD29_RS05640	COG1104	cysteine desulfurase activity
AMD29_RS05650	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
AMD29_RS05655	COG2003	Belongs to the UPF0758 family
AMD29_RS05660	COG0628	permease
AMD29_RS05665	COG2723	6-phospho-beta-galactosidase activity
AMD29_RS05675	COG0561	phosphatase activity
AMD29_RS05685	COG0038	chloride channel
AMD29_RS05695	COG1177	transmembrane transport
AMD29_RS05700	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMD29_RS05710	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMD29_RS05715	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AMD29_RS05735	COG0285	dihydrofolate synthase activity
AMD29_RS05740	COG2962	Rard protein
AMD29_RS05755	COG0726	polysaccharide deacetylase
AMD29_RS05760	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMD29_RS05780	COG1012	belongs to the aldehyde dehydrogenase family
AMD29_RS05860	COG2261	transglycosylase associated protein
AMD29_RS05885	COG1115	amino acid carrier protein
AMD29_RS05890	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AMD29_RS05900	COG1346	cytolysis
AMD29_RS05915	COG0539	negative regulation of cytoplasmic translation
AMD29_RS05935	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMD29_RS05945	COG0187	DNA topoisomerase II activity
AMD29_RS05950	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMD29_RS05965	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMD29_RS05975	COG1083	cytidylyl-transferase
AMD29_RS05975	COG2755	lipolytic protein G-D-S-L family
AMD29_RS05990	COG2089	acid synthase
AMD29_RS06005	COG1216	Glycosyl transferase, family 2
AMD29_RS06005	COG1442	glycosyl transferase family 8
AMD29_RS06010	COG1216	Glycosyl transferase, family 2
AMD29_RS06010	COG1442	glycosyl transferase family 8
AMD29_RS06025	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMD29_RS06050	COG1316	TRANSCRIPTIONal
AMD29_RS06075	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AMD29_RS06090	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMD29_RS06110	COG3842	ATPase activity
AMD29_RS06125	COG1293	RNA-binding protein homologous to eukaryotic snRNP
AMD29_RS06130	COG3527	Alpha-acetolactate decarboxylase
AMD29_RS06135	COG0028	Belongs to the TPP enzyme family
AMD29_RS06140	COG0457	Tetratricopeptide repeat
AMD29_RS06145	COG0628	permease
AMD29_RS06155	COG1051	belongs to the nudix hydrolase family
AMD29_RS06395	COG3561	AntA/AntB antirepressor
AMD29_RS06405	COG2932	Transcriptional regulator
AMD29_RS06415	COG2314	TM2 domain
AMD29_RS06425	COG5492	domain, Protein
AMD29_RS06430	COG1088	dTDP-glucose 4,6-dehydratase activity
AMD29_RS06440	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AMD29_RS06445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMD29_RS06455	COG2384	SAM-dependent methyltransferase
AMD29_RS06475	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AMD29_RS06475	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMD29_RS06480	COG0300	oxidoreductase activity
AMD29_RS06525	COG1573	uracil-dna glycosylase
AMD29_RS06530	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMD29_RS06540	COG0584	glycerophosphoryl diester phosphodiesterase
AMD29_RS06545	COG0322	excinuclease ABC activity
AMD29_RS06555	COG0534	Mate efflux family protein
AMD29_RS06590	COG2801	Transposase and inactivated derivatives
AMD29_RS06610	COG0803	Belongs to the bacterial solute-binding protein 9 family
AMD29_RS06635	COG2176	DNA-directed DNA polymerase activity
AMD29_RS06645	COG4974	Belongs to the 'phage' integrase family
AMD29_RS06675	COG1674	ftsk spoiiie
AMD29_RS06715	COG2040	homocysteine
AMD29_RS06720	COG0833	amino acid
AMD29_RS06755	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AMD29_RS06765	COG3425	synthase
AMD29_RS06780	COG1272	protein, Hemolysin III
AMD29_RS06825	COG0745	RESPONSE REGULATOR receiver
AMD29_RS06830	COG2357	RelA SpoT domain protein
AMD29_RS06835	COG1132	(ABC) transporter
AMD29_RS06850	COG0737	Belongs to the 5'-nucleotidase family
AMD29_RS06855	COG0242	peptide deformylase activity
AMD29_RS06860	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AMD29_RS06870	COG1132	(ABC) transporter
AMD29_RS06885	COG0488	(ABC) transporter
AMD29_RS06915	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD29_RS06915	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD29_RS06915	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD29_RS06920	COG1105	Belongs to the carbohydrate kinase PfkB family
AMD29_RS06925	COG1349	DNA-binding transcription factor activity
AMD29_RS06980	COG1837	Belongs to the UPF0109 family
AMD29_RS06985	COG0228	four-way junction DNA binding
AMD29_RS06990	COG0577	efflux transmembrane transporter activity
AMD29_RS06995	COG1136	(ABC) transporter
AMD29_RS07000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMD29_RS07010	COG0505	Belongs to the CarA family
AMD29_RS07020	COG0564	pseudouridine synthase activity
AMD29_RS07030	COG0583	DNA-binding transcription factor activity
AMD29_RS07035	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMD29_RS07055	COG0301	tRNA thio-modification
AMD29_RS07060	COG1104	cysteine desulfurase activity
AMD29_RS07070	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMD29_RS07075	COG3679	Belongs to the UPF0342 family
AMD29_RS07080	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMD29_RS07095	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMD29_RS07100	COG1368	sulfuric ester hydrolase activity
AMD29_RS07105	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMD29_RS07115	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMD29_RS07120	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMD29_RS07145	COG2244	polysaccharide biosynthetic process
AMD29_RS07150	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMD29_RS07155	COG1120	ATPase activity
AMD29_RS07160	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AMD29_RS07165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMD29_RS07170	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMD29_RS07185	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AMD29_RS07190	COG1253	flavin adenine dinucleotide binding
AMD29_RS07195	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
AMD29_RS07200	COG1242	4 iron, 4 sulfur cluster binding
AMD29_RS07205	COG0671	phosphoesterase, PA-phosphatase related
AMD29_RS07210	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
AMD29_RS07245	COG0297	glycogen (starch) synthase activity
AMD29_RS07285	COG3475	LICD family
AMD29_RS07300	COG0463	Glycosyl transferase, family 2
AMD29_RS07305	COG1215	transferase activity, transferring glycosyl groups
AMD29_RS07315	COG1091	dTDP-4-dehydrorhamnose reductase activity
AMD29_RS07320	COG2151	metal-sulfur cluster biosynthetic enzyme
AMD29_RS07325	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMD29_RS07330	COG0358	DNA primase activity
AMD29_RS07335	COG1970	mechanosensitive ion channel activity
AMD29_RS07350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMD29_RS07355	COG0004	ammonium transporteR
AMD29_RS07365	COG1054	Belongs to the UPF0176 family
AMD29_RS07375	COG2271	Major facilitator Superfamily
AMD29_RS07380	COG0058	SHG alpha-glucan phosphorylase activity
AMD29_RS07385	COG1640	4-alpha-glucanotransferase
AMD29_RS07390	COG1609	Transcriptional regulator
AMD29_RS07400	COG1175	transmembrane transport
AMD29_RS07405	COG3833	ABC-type maltose transport systems, permease component
AMD29_RS07410	COG3104	oligopeptide transport
AMD29_RS07430	COG0438	transferase activity, transferring glycosyl groups
AMD29_RS07435	COG0653	protein targeting
AMD29_RS07455	COG0201	protein transport
AMD29_RS07460	COG1442	glycosyl transferase family 8
AMD29_RS07465	COG1442	glycosyl transferase family 8
AMD29_RS07465	COG1216	Glycosyl transferase, family 2
AMD29_RS07470	COG1442	glycosyl transferase family 8
AMD29_RS07475	COG1216	Glycosyl transferase, family 2
AMD29_RS07475	COG1442	glycosyl transferase family 8
AMD29_RS07480	COG1442	glycosyl transferase family 8
AMD29_RS07515	COG0765	amino acid transport
AMD29_RS07520	COG1126	abc transporter atp-binding protein
AMD29_RS07545	COG2309	aminopeptidase activity
AMD29_RS07555	COG0154	amidase activity
AMD29_RS07560	COG1187	pseudouridine synthase activity
AMD29_RS07565	COG0656	L-ascorbic acid biosynthetic process
AMD29_RS07570	COG0778	Nitroreductase
AMD29_RS07575	COG0346	lactoylglutathione lyase activity
AMD29_RS07580	COG0463	Glycosyl transferase, family 2
AMD29_RS07585	COG1113	amino acid transport
AMD29_RS07590	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMD29_RS07595	COG0557	exoribonuclease II activity
AMD29_RS07605	COG2814	Major facilitator Superfamily
AMD29_RS07615	COG1131	(ABC) transporter
AMD29_RS07620	COG0237	dephospho-CoA kinase activity
AMD29_RS07625	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMD29_RS07630	COG1396	sequence-specific DNA binding
AMD29_RS07670	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMD29_RS07675	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMD29_RS07695	COG1702	phosphate starvation-inducible protein PhoH
AMD29_RS07710	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMD29_RS07720	COG0233	cytoplasmic translational termination
AMD29_RS07735	COG0444	Belongs to the ABC transporter superfamily
AMD29_RS07740	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AMD29_RS07745	COG0601	transmembrane transport
AMD29_RS07750	COG0747	negative chemotaxis
AMD29_RS07755	COG0081	regulation of translation
AMD29_RS07760	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMD29_RS07770	COG1473	amidohydrolase
AMD29_RS07775	COG0583	DNA-binding transcription factor activity
AMD29_RS07780	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMD29_RS07785	COG1674	ftsk spoiiie
AMD29_RS07790	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMD29_RS07815	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMD29_RS07845	COG0673	inositol 2-dehydrogenase activity
AMD29_RS07860	COG1028	Short-chain dehydrogenase reductase Sdr
AMD29_RS07910	COG1114	Component of the transport system for branched-chain amino acids
AMD29_RS07915	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD29_RS07915	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMD29_RS07930	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AMD29_RS07940	COG0708	Exodeoxyribonuclease III
AMD29_RS07945	COG1393	Belongs to the ArsC family
AMD29_RS07950	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AMD29_RS07955	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMD29_RS07965	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMD29_RS07985	COG0470	DNA polymerase III
AMD29_RS07995	COG0517	IMP dehydrogenase activity
AMD29_RS08035	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMD29_RS08040	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AMD29_RS08050	COG0531	amino acid
AMD29_RS08055	COG0569	domain protein
AMD29_RS08070	COG1187	pseudouridine synthase activity
AMD29_RS08080	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AMD29_RS08085	COG0582	viral genome integration into host DNA
AMD29_RS08105	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AMD29_RS08120	COG1827	regulation of RNA biosynthetic process
AMD29_RS08135	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMD29_RS08140	COG1254	Belongs to the acylphosphatase family
AMD29_RS08145	COG0706	membrane insertase activity
AMD29_RS08150	COG0765	amino acid transport
AMD29_RS08155	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMD29_RS08170	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMD29_RS08180	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMD29_RS08200	COG1484	DNA-dependent DNA replication
AMD29_RS08215	COG5002	protein histidine kinase activity
AMD29_RS08220	COG0745	RESPONSE REGULATOR receiver
AMD29_RS08230	COG0501	Belongs to the peptidase M48B family
AMD29_RS08235	COG1704	LemA family
AMD29_RS08240	COG0357	Ribosomal RNA small subunit methyltransferase G
AMD29_RS08245	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMD29_RS08250	COG0569	domain protein
AMD29_RS08260	COG1122	ATPase activity
AMD29_RS08270	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
AMD29_RS08275	COG1114	Component of the transport system for branched-chain amino acids
AMD29_RS08280	COG1063	alcohol dehydrogenase
AMD29_RS08305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMD29_RS08310	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AMD29_RS08315	COG0217	transcriptional regulatory protein
AMD29_RS08320	COG2376	Dihydroxyacetone kinase
AMD29_RS08325	COG1309	transcriptional regulator
AMD29_RS08330	COG2376	Dihydroxyacetone kinase
AMD29_RS08335	COG1461	Dihydroxyacetone kinase
AMD29_RS08340	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
AMD29_RS08345	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD29_RS08355	COG0789	Transcriptional regulator
AMD29_RS08370	COG2226	methyltransferase
AMD29_RS08375	COG0799	negative regulation of ribosome biogenesis
AMD29_RS08385	COG1713	HD superfamily hydrolase involved in NAD metabolism
AMD29_RS08390	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMD29_RS08395	COG1534	Rna-binding protein
AMD29_RS08400	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AMD29_RS08405	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
AMD29_RS08430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMD29_RS08430	COG0574	Belongs to the PEP-utilizing enzyme family
AMD29_RS08440	COG0517	IMP dehydrogenase activity
AMD29_RS08450	COG1335	isochorismatase
AMD29_RS08455	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
AMD29_RS08460	COG0436	Aminotransferase
AMD29_RS08465	COG0589	response to stress
AMD29_RS08470	COG0561	phosphatase activity
AMD29_RS08475	COG0252	asparaginase activity
AMD29_RS08485	COG4989	oxidoreductase activity
AMD29_RS08490	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMD29_RS08495	COG3942	CHAP domain
AMD29_RS08495	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD29_RS08505	COG0736	holo-[acyl-carrier-protein] synthase activity
AMD29_RS08510	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AMD29_RS08520	COG1482	cell wall glycoprotein biosynthetic process
AMD29_RS08525	COG1940	carbohydrate kinase activity
AMD29_RS08530	COG2190	(PTS) system
AMD29_RS08530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMD29_RS08530	COG1263	PTS System
AMD29_RS08535	COG1621	beta-fructofuranosidase activity
AMD29_RS08540	COG1609	Transcriptional regulator
AMD29_RS08545	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMD29_RS08555	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMD29_RS08575	COG2131	deaminase
AMD29_RS08590	COG2814	Major facilitator Superfamily
AMD29_RS08615	COG0629	single-stranded DNA binding
AMD29_RS08620	COG0360	Binds together with S18 to 16S ribosomal RNA
AMD29_RS08625	COG1194	a g-specific adenine glycosylase
AMD29_RS08635	COG3118	belongs to the thioredoxin family
AMD29_RS08665	COG0681	Belongs to the peptidase S26 family
AMD29_RS08670	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMD29_RS08685	COG1882	Formate acetyltransferase
AMD29_RS08690	COG3576	pyridoxamine 5-phosphate
AMD29_RS08695	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AMD29_RS08710	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AMD29_RS08720	COG2814	Major facilitator Superfamily
AMD29_RS08725	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD29_RS08740	COG0142	geranyltranstransferase activity
AMD29_RS08745	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AMD29_RS08750	COG4988	ABC transporter
AMD29_RS08755	COG1294	oxidase, subunit
AMD29_RS08760	COG1271	oxidase subunit
AMD29_RS08765	COG1252	NADH dehydrogenase
AMD29_RS08800	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMD29_RS08805	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AMD29_RS08805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD29_RS08805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD29_RS08810	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD29_RS08815	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AMD29_RS08820	COG3711	transcriptional antiterminator
AMD29_RS08820	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMD29_RS08840	COG4221	oxidoreductase activity
AMD29_RS08850	COG0656	L-ascorbic acid biosynthetic process
AMD29_RS08855	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AMD29_RS08870	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMD29_RS08875	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMD29_RS08880	COG0789	Transcriptional regulator
AMD29_RS08895	COG2081	HI0933 family
AMD29_RS08920	COG0456	acetyltransferase
AMD29_RS08925	COG1214	PFAM Peptidase M22, glycoprotease
AMD29_RS08940	COG3942	CHAP domain
AMD29_RS08945	COG0174	glutamine synthetase
AMD29_RS08950	COG0789	Transcriptional regulator
AMD29_RS08965	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
AMD29_RS08990	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMD29_RS09015	COG1162	GTPase activity
AMD29_RS09040	COG0084	hydrolase, TatD family'
AMD29_RS09065	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
AMD29_RS09070	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMD29_RS09075	COG1696	Membrane protein involved in D-alanine export
AMD29_RS09095	COG0745	RESPONSE REGULATOR receiver
AMD29_RS09105	COG3314	Sporulation integral membrane protein YlbJ
AMD29_RS09115	COG4175	Glycine betaine
AMD29_RS09115	COG3448	diguanylate cyclase activity
AMD29_RS09120	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
AMD29_RS09140	COG1070	Carbohydrate kinase
AMD29_RS09150	COG3775	system Galactitol-specific IIC component
AMD29_RS09155	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMD29_RS09165	COG1609	Transcriptional regulator
AMD29_RS09250	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMD29_RS09255	COG1428	Deoxynucleoside kinase
AMD29_RS09265	COG0542	response to heat
AMD29_RS09270	COG4463	regulation of RNA biosynthetic process
AMD29_RS09280	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMD29_RS09290	COG0450	alkyl hydroperoxide reductase
AMD29_RS09305	COG0025	NhaP-type Na H and K H
AMD29_RS09315	COG1619	proteins homologs of microcin C7 resistance protein MccF
AMD29_RS09320	COG3590	peptidase
AMD29_RS09345	COG1609	Transcriptional regulator
AMD29_RS09370	COG2176	DNA-directed DNA polymerase activity
AMD29_RS09375	COG1705	Flagellar rod assembly protein muramidase FlgJ
AMD29_RS09375	COG1388	LysM domain
AMD29_RS09390	COG4589	Belongs to the CDS family
AMD29_RS09395	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMD29_RS09400	COG1862	Preprotein translocase
AMD29_RS09415	COG3493	citrate carrier protein
AMD29_RS09420	COG3290	protein histidine kinase activity
AMD29_RS09425	COG4565	transcriptional regulatory protein
AMD29_RS09430	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMD29_RS09440	COG3842	ATPase activity
AMD29_RS09525	COG0737	Belongs to the 5'-nucleotidase family
AMD29_RS09535	COG1363	Peptidase, m42
AMD29_RS09555	COG2207	Transcriptional regulator
AMD29_RS09555	COG4753	response regulator
AMD29_RS09560	COG2972	Histidine kinase
AMD29_RS09565	COG3716	PTS system mannose fructose sorbose family IID component
AMD29_RS09570	COG3715	PTS system
AMD29_RS09600	COG1131	(ABC) transporter
AMD29_RS09610	COG2274	protein secretion by the type I secretion system
AMD29_RS09615	COG3290	protein histidine kinase activity
AMD29_RS09630	COG1263	PTS System
AMD29_RS09630	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AMD29_RS09630	COG2190	(PTS) system
AMD29_RS09635	COG5002	protein histidine kinase activity
AMD29_RS09640	COG0745	RESPONSE REGULATOR receiver
AMD29_RS09655	COG0581	inorganic phosphate transmembrane transporter activity
AMD29_RS09660	COG0573	inorganic phosphate transmembrane transporter activity
AMD29_RS09675	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMD29_RS09690	COG0789	Transcriptional regulator
AMD29_RS09700	COG0494	nUDIX hydrolase
AMD29_RS09715	COG0456	acetyltransferase
AMD29_RS09720	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMD29_RS09745	COG0582	viral genome integration into host DNA
AMD29_RS09755	COG2946	Replication initiation factor
AMD29_RS09770	COG2378	regulation of single-species biofilm formation
AMD29_RS09775	COG0693	protein deglycase activity
AMD29_RS09850	COG1131	(ABC) transporter
AMD29_RS09885	COG1131	(ABC) transporter
AMD29_RS09895	COG1396	sequence-specific DNA binding
AMD29_RS09905	COG1694	Mazg nucleotide pyrophosphohydrolase
AMD29_RS09910	COG1611	Belongs to the LOG family
AMD29_RS09920	COG2897	thiosulfate sulfurtransferase activity
AMD29_RS09935	COG0371	Dehydrogenase
AMD29_RS09945	COG0646	methionine synthase
AMD29_RS09945	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AMD29_RS09960	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMD29_RS09975	COG2770	Histidine kinase
AMD29_RS09975	COG2205	protein histidine kinase activity
AMD29_RS09990	COG2814	Major facilitator Superfamily
AMD29_RS09995	COG4667	esterase of the alpha-beta hydrolase superfamily
AMD29_RS10010	COG4667	esterase of the alpha-beta hydrolase superfamily
AMD29_RS10030	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMD29_RS10035	COG0564	pseudouridine synthase activity
AMD29_RS10055	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AMD29_RS10060	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
AMD29_RS10080	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMD29_RS10085	COG1116	anion transmembrane transporter activity
AMD29_RS10085	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMD29_RS10090	COG4120	Belongs to the binding-protein-dependent transport system permease family
AMD29_RS10100	COG0561	phosphatase activity
AMD29_RS10105	COG2514	catechol 2,3-dioxygenase activity
AMD29_RS10115	COG0602	queuosine metabolic process
AMD29_RS10135	COG1328	CTP reductase activity
AMD29_RS10155	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMD29_RS10165	COG1393	Belongs to the ArsC family
AMD29_RS10170	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMD29_RS10180	COG2818	Glycosylase
AMD29_RS10225	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AMD29_RS10230	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AMD29_RS10250	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMD29_RS10305	COG0582	viral genome integration into host DNA
AMD29_RS10380	COG0745	RESPONSE REGULATOR receiver
AMD29_RS10385	COG5002	protein histidine kinase activity
AMD29_RS10390	COG1288	antiporter activity
AMD29_RS10400	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMD29_RS10405	COG3852	Histidine kinase
AMD29_RS10410	COG0784	Response regulator, receiver
AMD29_RS10415	COG0517	IMP dehydrogenase activity
AMD29_RS10415	COG1125	glycine betaine transport
AMD29_RS10420	COG1174	glycine betaine transport
AMD29_RS10425	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AMD29_RS10425	COG0392	lysyltransferase activity
AMD29_RS10435	COG3759	membrane
AMD29_RS10535	COG2314	TM2 domain
AMD29_RS10555	COG0582	viral genome integration into host DNA
AMD29_RS10570	COG0305	Participates in initiation and elongation during chromosome replication
AMD29_RS10590	COG2095	MarC family integral membrane protein
AMD29_RS10595	COG0482	sulfurtransferase activity
AMD29_RS10600	COG1760	l-serine dehydratase
AMD29_RS10605	COG1760	l-serine dehydratase
AMD29_RS10610	COG0741	lytic transglycosylase activity
AMD29_RS10635	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMD29_RS10640	COG0612	Peptidase, M16
AMD29_RS10645	COG0612	Peptidase, M16
AMD29_RS10650	COG2501	S4 domain
AMD29_RS10670	COG0517	IMP dehydrogenase activity
AMD29_RS10670	COG0516	GMP reductase activity
AMD29_RS10680	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMD29_RS10695	COG0454	-acetyltransferase
AMD29_RS10710	COG0549	Belongs to the carbamate kinase family
AMD29_RS10725	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AMD29_RS10730	COG0488	(ABC) transporter
AMD29_RS10735	COG4485	Bacterial membrane protein, YfhO
AMD29_RS10755	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMD29_RS10760	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMD29_RS10765	COG1475	DNA binding
AMD29_RS10775	COG0592	DNA-directed DNA polymerase activity
AMD29_RS10780	COG1597	lipid kinase activity
AMD29_RS10790	COG0012	GTP binding
AMD29_RS10800	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMD29_RS10805	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AMD29_RS10835	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins