locus-tag class description RDF_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RDF_RS00005 PF00308 Bacterial dnaA protein RDF_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RDF_RS00010 PF02767 DNA polymerase III beta subunit, central domain RDF_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RDF_RS00030 PF01926 50S ribosome-binding GTPase RDF_RS00030 PF06071 Protein of unknown function (DUF933) RDF_RS00035 PF01195 Peptidyl-tRNA hydrolase RDF_RS00040 PF00271 Helicase conserved C-terminal domain RDF_RS00040 PF00270 DEAD/DEAH box helicase RDF_RS00040 PF02559 CarD-like/TRCF domain RDF_RS00040 PF17757 UvrB interaction domain RDF_RS00040 PF03461 TRCF domain RDF_RS00045 PF01479 S4 domain RDF_RS00065 PF01171 PP-loop family RDF_RS00070 PF00156 Phosphoribosyl transferase domain RDF_RS00075 PF06480 FtsH Extracellular RDF_RS00075 PF00004 ATPase family associated with various cellular activities (AAA) RDF_RS00075 PF01434 Peptidase family M41 RDF_RS00075 PF17862 AAA+ lid domain RDF_RS00255 PF14572 Phosphoribosyl synthetase-associated domain RDF_RS00255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RDF_RS00260 PF00155 Aminotransferase class I and II RDF_RS00265 PF02565 Recombination protein O C terminal RDF_RS00265 PF11967 Recombination protein O N terminal RDF_RS00275 PF02504 Fatty acid synthesis protein RDF_RS00285 PF01259 SAICAR synthetase RDF_RS00290 PF02769 AIR synthase related protein, C-terminal domain RDF_RS00290 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RDF_RS00290 PF00586 AIR synthase related protein, N-terminal domain RDF_RS00295 PF13537 Glutamine amidotransferase domain RDF_RS00295 PF00156 Phosphoribosyl transferase domain RDF_RS00300 PF02769 AIR synthase related protein, C-terminal domain RDF_RS00300 PF00586 AIR synthase related protein, N-terminal domain RDF_RS00305 PF00551 Formyl transferase RDF_RS00315 PF02142 MGS-like domain RDF_RS00315 PF01808 AICARFT/IMPCHase bienzyme RDF_RS00320 PF01551 Peptidase family M23 RDF_RS00320 PF01476 LysM domain RDF_RS00330 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RDF_RS00340 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS00345 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS00360 PF00701 Dihydrodipicolinate synthetase family RDF_RS00365 PF00480 ROK family RDF_RS00370 PF05448 Acetyl xylan esterase (AXE1) RDF_RS00380 PF02843 Phosphoribosylglycinamide synthetase, C domain RDF_RS00380 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RDF_RS00380 PF02844 Phosphoribosylglycinamide synthetase, N domain RDF_RS00385 PF00731 AIR carboxylase RDF_RS00390 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RDF_RS00390 PF02222 ATP-grasp domain RDF_RS00400 PF10397 Adenylosuccinate lyase C-terminus RDF_RS00400 PF00206 Lyase RDF_RS00410 PF05491 RuvB C-terminal winged helix domain RDF_RS00410 PF17864 RuvB AAA lid domain RDF_RS00410 PF05496 Holliday junction DNA helicase RuvB P-loop domain RDF_RS00415 PF01451 Low molecular weight phosphotyrosine protein phosphatase RDF_RS00425 PF01757 Acyltransferase family RDF_RS00430 PF00465 Iron-containing alcohol dehydrogenase RDF_RS00430 PF00171 Aldehyde dehydrogenase family RDF_RS00435 PF08240 Alcohol dehydrogenase GroES-like domain RDF_RS00435 PF00107 Zinc-binding dehydrogenase RDF_RS00440 PF14821 Threonine synthase N terminus RDF_RS00440 PF00291 Pyridoxal-phosphate dependent enzyme RDF_RS00445 PF01554 MatE RDF_RS00450 PF00338 Ribosomal protein S10p/S20e RDF_RS00455 PF00297 Ribosomal protein L3 RDF_RS00460 PF00573 Ribosomal protein L4/L1 family RDF_RS00465 PF00276 Ribosomal protein L23 RDF_RS00470 PF00181 Ribosomal Proteins L2, RNA binding domain RDF_RS00470 PF03947 Ribosomal Proteins L2, C-terminal domain RDF_RS00475 PF00203 Ribosomal protein S19 RDF_RS00480 PF00237 Ribosomal protein L22p/L17e RDF_RS00485 PF00189 Ribosomal protein S3, C-terminal domain RDF_RS00485 PF07650 KH domain RDF_RS00490 PF00252 Ribosomal protein L16p/L10e RDF_RS00495 PF00831 Ribosomal L29 protein RDF_RS00500 PF00366 Ribosomal protein S17 RDF_RS00505 PF00238 Ribosomal protein L14p/L23e RDF_RS00510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RDF_RS00510 PF00467 KOW motif RDF_RS00515 PF00281 Ribosomal protein L5 RDF_RS00515 PF00673 ribosomal L5P family C-terminus RDF_RS00520 PF00253 Ribosomal protein S14p/S29e RDF_RS00525 PF00410 Ribosomal protein S8 RDF_RS00530 PF00347 Ribosomal protein L6 RDF_RS00535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RDF_RS00540 PF00333 Ribosomal protein S5, N-terminal domain RDF_RS00540 PF03719 Ribosomal protein S5, C-terminal domain RDF_RS00545 PF00327 Ribosomal protein L30p/L7e RDF_RS00550 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RDF_RS00555 PF00344 SecY translocase RDF_RS00565 PF01176 Translation initiation factor 1A / IF-1 RDF_RS00570 PF00416 Ribosomal protein S13/S18 RDF_RS00575 PF00411 Ribosomal protein S11 RDF_RS00580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RDF_RS00580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RDF_RS00580 PF01000 RNA polymerase Rpb3/RpoA insert domain RDF_RS00585 PF01196 Ribosomal protein L17 RDF_RS00695 PF11208 Protein of unknown function (DUF2992) RDF_RS00710 PF02557 D-alanyl-D-alanine carboxypeptidase RDF_RS00715 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS00715 PF13457 GW (Gly-Tryp) dipeptide domain RDF_RS00720 PF01628 HrcA protein C terminal domain RDF_RS00720 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RDF_RS00725 PF01025 GrpE RDF_RS00730 PF00012 Hsp70 protein RDF_RS00735 PF00684 DnaJ central domain RDF_RS00735 PF01556 DnaJ C terminal domain RDF_RS00735 PF00226 DnaJ domain RDF_RS00740 PF00392 Bacterial regulatory proteins, gntR family RDF_RS00740 PF00155 Aminotransferase class I and II RDF_RS00745 PF01416 tRNA pseudouridine synthase RDF_RS00750 PF08543 Phosphomethylpyrimidine kinase RDF_RS00755 PF07155 ECF-type riboflavin transporter, S component RDF_RS00760 PF04260 Protein of unknown function (DUF436) RDF_RS00765 PF00924 Mechanosensitive ion channel RDF_RS00770 PF05697 Bacterial trigger factor protein (TF) RDF_RS00770 PF05698 Bacterial trigger factor protein (TF) C-terminus RDF_RS00770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RDF_RS00775 PF05066 HB1, ASXL, restriction endonuclease HTH domain RDF_RS00780 PF06418 CTP synthase N-terminus RDF_RS00780 PF00117 Glutamine amidotransferase class-I RDF_RS00795 PF00692 dUTPase RDF_RS00800 PF18073 Rubredoxin metal binding domain RDF_RS00805 PF00484 Carbonic anhydrase RDF_RS00810 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS00810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RDF_RS00815 PF00749 tRNA synthetases class I (E and Q), catalytic domain RDF_RS00820 PF13407 Periplasmic binding protein domain RDF_RS00825 PF02653 Branched-chain amino acid transport system / permease component RDF_RS00830 PF00005 ABC transporter RDF_RS00835 PF05025 RbsD / FucU transport protein family RDF_RS00840 PF00294 pfkB family carbohydrate kinase RDF_RS00845 PF00356 Bacterial regulatory proteins, lacI family RDF_RS00850 PF02687 FtsX-like permease family RDF_RS00855 PF00005 ABC transporter RDF_RS00860 PF00486 Transcriptional regulatory protein, C terminal RDF_RS00860 PF00072 Response regulator receiver domain RDF_RS00865 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS00870 PF00764 Arginosuccinate synthase RDF_RS00875 PF14698 Argininosuccinate lyase C-terminal RDF_RS00875 PF00206 Lyase RDF_RS00880 PF01116 Fructose-bisphosphate aldolase class-II RDF_RS00885 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RDF_RS00885 PF00056 lactate/malate dehydrogenase, NAD binding domain RDF_RS00890 PF00830 Ribosomal L28 family RDF_RS00895 PF03780 Asp23 family, cell envelope-related function RDF_RS00900 PF13684 Dihydroxyacetone kinase family RDF_RS00900 PF02734 DAK2 domain RDF_RS00920 PF00005 ABC transporter RDF_RS00925 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS00935 PF02673 Bacitracin resistance protein BacA RDF_RS00940 PF05389 Negative regulator of genetic competence (MecA) RDF_RS00945 PF00953 Glycosyl transferase family 4 RDF_RS00950 PF00005 ABC transporter RDF_RS00955 PF01458 Uncharacterized protein family (UPF0051) RDF_RS00960 PF00266 Aminotransferase class-V RDF_RS00965 PF01592 NifU-like N terminal domain RDF_RS00970 PF01458 Uncharacterized protein family (UPF0051) RDF_RS00975 PF07943 Penicillin-binding protein 5, C-terminal domain RDF_RS00975 PF00768 D-alanyl-D-alanine carboxypeptidase RDF_RS00980 PF07943 Penicillin-binding protein 5, C-terminal domain RDF_RS00980 PF00768 D-alanyl-D-alanine carboxypeptidase RDF_RS00985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RDF_RS00990 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS00995 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS00995 PF12911 N-terminal TM domain of oligopeptide transport permease C RDF_RS01000 PF00005 ABC transporter RDF_RS01000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RDF_RS01005 PF00005 ABC transporter RDF_RS01005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RDF_RS01035 PF08544 GHMP kinases C terminal RDF_RS01035 PF00288 GHMP kinases N terminal domain RDF_RS01040 PF01047 MarR family RDF_RS01045 PF00005 ABC transporter RDF_RS01050 PF00950 ABC 3 transport family RDF_RS01060 PF00579 tRNA synthetases class I (W and Y) RDF_RS01060 PF01479 S4 domain RDF_RS01065 PF00905 Penicillin binding protein transpeptidase domain RDF_RS01065 PF00912 Transglycosylase RDF_RS01070 PF04561 RNA polymerase Rpb2, domain 2 RDF_RS01070 PF04563 RNA polymerase beta subunit RDF_RS01070 PF10385 RNA polymerase beta subunit external 1 domain RDF_RS01070 PF00562 RNA polymerase Rpb2, domain 6 RDF_RS01070 PF04560 RNA polymerase Rpb2, domain 7 RDF_RS01070 PF04565 RNA polymerase Rpb2, domain 3 RDF_RS01075 PF04997 RNA polymerase Rpb1, domain 1 RDF_RS01075 PF00623 RNA polymerase Rpb1, domain 2 RDF_RS01075 PF04983 RNA polymerase Rpb1, domain 3 RDF_RS01075 PF05000 RNA polymerase Rpb1, domain 4 RDF_RS01075 PF04998 RNA polymerase Rpb1, domain 5 RDF_RS01085 PF00437 Type II/IV secretion system protein RDF_RS01090 PF00482 Type II secretion system (T2SS), protein F RDF_RS01125 PF00871 Acetokinase family RDF_RS01145 PF03807 NADP oxidoreductase coenzyme F420-dependent RDF_RS01145 PF14748 Pyrroline-5-carboxylate reductase dimerisation RDF_RS01150 PF05343 M42 glutamyl aminopeptidase RDF_RS01165 PF00085 Thioredoxin RDF_RS01170 PF14794 Domain of unknown function (DUF4479) RDF_RS01170 PF01588 Putative tRNA binding domain RDF_RS01180 PF00436 Single-strand binding protein family RDF_RS01185 PF13419 Haloacid dehalogenase-like hydrolase RDF_RS01190 PF07694 5TMR of 5TMR-LYT RDF_RS01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS01190 PF06580 Histidine kinase RDF_RS01195 PF00072 Response regulator receiver domain RDF_RS01195 PF04397 LytTr DNA-binding domain RDF_RS01200 PF03788 LrgA family RDF_RS01205 PF04172 LrgB-like family RDF_RS01210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RDF_RS01215 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS01220 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS01220 PF12911 N-terminal TM domain of oligopeptide transport permease C RDF_RS01225 PF12558 ATP-binding cassette cobalt transporter RDF_RS01225 PF00005 ABC transporter RDF_RS01230 PF00005 ABC transporter RDF_RS01235 PF00367 phosphotransferase system, EIIB RDF_RS01235 PF02378 Phosphotransferase system, EIIC RDF_RS01240 PF16657 Maltogenic Amylase, C-terminal domain RDF_RS01240 PF00128 Alpha amylase, catalytic domain RDF_RS01245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RDF_RS01250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RDF_RS01255 PF03611 PTS system sugar-specific permease component RDF_RS01260 PF00456 Transketolase, thiamine diphosphate binding domain RDF_RS01265 PF02779 Transketolase, pyrimidine binding domain RDF_RS01265 PF02780 Transketolase, C-terminal domain RDF_RS01265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RDF_RS01270 PF00111 2Fe-2S iron-sulfur cluster binding domain RDF_RS01270 PF00970 Oxidoreductase FAD-binding domain RDF_RS01270 PF00175 Oxidoreductase NAD-binding domain RDF_RS01275 PF00312 Ribosomal protein S15 RDF_RS01280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RDF_RS01280 PF01138 3' exoribonuclease family, domain 1 RDF_RS01280 PF03725 3' exoribonuclease family, domain 2 RDF_RS01280 PF00013 KH domain RDF_RS01280 PF00575 S1 RNA binding domain RDF_RS01290 PF00132 Bacterial transferase hexapeptide (six repeats) RDF_RS01290 PF06426 Serine acetyltransferase, N-terminal RDF_RS01300 PF01406 tRNA synthetases class I (C) catalytic domain RDF_RS01300 PF09190 DALR domain RDF_RS01305 PF00636 Ribonuclease III domain RDF_RS01310 PF08032 RNA 2'-O ribose methyltransferase substrate binding RDF_RS01310 PF00588 SpoU rRNA Methylase family RDF_RS01320 PF02645 Uncharacterised protein, DegV family COG1307 RDF_RS01325 PF00572 Ribosomal protein L13 RDF_RS01330 PF00380 Ribosomal protein S9/S16 RDF_RS01335 PF00589 Phage integrase family RDF_RS01335 PF02899 Phage integrase, N-terminal SAM-like domain RDF_RS01370 PF02486 Replication initiation factor RDF_RS01380 PF01076 Plasmid recombination enzyme RDF_RS01440 PF01555 DNA methylase RDF_RS01445 PF04851 Type III restriction enzyme, res subunit RDF_RS01450 PF06013 Proteins of 100 residues with WXG RDF_RS01490 PF01381 Helix-turn-helix RDF_RS01495 PF07690 Major Facilitator Superfamily RDF_RS01500 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS01505 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RDF_RS01510 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS01515 PF00571 CBS domain RDF_RS01515 PF00005 ABC transporter RDF_RS01635 PF13673 Acetyltransferase (GNAT) domain RDF_RS01635 PF13302 Acetyltransferase (GNAT) domain RDF_RS01635 PF00117 Glutamine amidotransferase class-I RDF_RS01635 PF03352 Methyladenine glycosylase RDF_RS01635 PF00958 GMP synthase C terminal domain RDF_RS01650 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RDF_RS01660 PF00440 Bacterial regulatory proteins, tetR family RDF_RS01670 PF00005 ABC transporter RDF_RS01680 PF03551 Transcriptional regulator PadR-like family RDF_RS01690 PF01979 Amidohydrolase family RDF_RS01695 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family RDF_RS01700 PF02091 Glycyl-tRNA synthetase alpha subunit RDF_RS01705 PF02525 Flavodoxin-like fold RDF_RS01710 PF02092 Glycyl-tRNA synthetase beta subunit RDF_RS01710 PF05746 DALR anticodon binding domain RDF_RS01715 PF05979 Bacterial protein of unknown function (DUF896) RDF_RS01725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RDF_RS01725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RDF_RS01730 PF01266 FAD dependent oxidoreductase RDF_RS01730 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RDF_RS01735 PF00230 Major intrinsic protein RDF_RS01740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RDF_RS01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS01750 PF00456 Transketolase, thiamine diphosphate binding domain RDF_RS01750 PF02779 Transketolase, pyrimidine binding domain RDF_RS01750 PF02780 Transketolase, C-terminal domain RDF_RS01760 PF00005 ABC transporter RDF_RS01770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RDF_RS01770 PF00367 phosphotransferase system, EIIB RDF_RS01770 PF02378 Phosphotransferase system, EIIC RDF_RS01775 PF00696 Amino acid kinase family RDF_RS01780 PF00171 Aldehyde dehydrogenase family RDF_RS01785 PF01795 MraW methylase family RDF_RS01795 PF00905 Penicillin binding protein transpeptidase domain RDF_RS01795 PF03717 Penicillin-binding Protein dimerisation domain RDF_RS01795 PF03793 PASTA domain RDF_RS01800 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RDF_RS01800 PF00953 Glycosyl transferase family 4 RDF_RS01805 PF00270 DEAD/DEAH box helicase RDF_RS01805 PF00271 Helicase conserved C-terminal domain RDF_RS01810 PF00497 Bacterial extracellular solute-binding proteins, family 3 RDF_RS01815 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS01820 PF00005 ABC transporter RDF_RS01830 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS01835 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RDF_RS01835 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RDF_RS01835 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RDF_RS01840 PF02540 NAD synthase RDF_RS01845 PF03051 Peptidase C1-like family RDF_RS01850 PF00912 Transglycosylase RDF_RS01850 PF00905 Penicillin binding protein transpeptidase domain RDF_RS01855 PF03838 Recombination protein U RDF_RS01860 PF06908 YspA SLOG family RDF_RS01865 PF05103 DivIVA protein RDF_RS01870 PF02926 THUMP domain RDF_RS01870 PF01170 Putative RNA methylase family UPF0020 RDF_RS01875 PF18708 MapZ extracellular C-terminal domain 2 RDF_RS01875 PF18041 MapZ extracellular domain 1 RDF_RS01880 PF02664 S-Ribosylhomocysteinase (LuxS) RDF_RS01885 PF12072 Domain of unknown function (DUF3552) RDF_RS01885 PF01966 HD domain RDF_RS01885 PF00013 KH domain RDF_RS01890 PF00005 ABC transporter RDF_RS01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS01900 PF07730 Histidine kinase RDF_RS01905 PF00072 Response regulator receiver domain RDF_RS01905 PF00196 Bacterial regulatory proteins, luxR family RDF_RS01910 PF06736 Protein of unknown function (DUF1211) RDF_RS01915 PF00625 Guanylate kinase RDF_RS01920 PF01192 RNA polymerase Rpb6 RDF_RS01925 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RDF_RS01925 PF00271 Helicase conserved C-terminal domain RDF_RS01925 PF04851 Type III restriction enzyme, res subunit RDF_RS01925 PF18074 Primosomal protein N C-terminal domain RDF_RS01925 PF17764 3′ DNA-binding domain (3′BD) RDF_RS01930 PF00551 Formyl transferase RDF_RS01930 PF02911 Formyl transferase, C-terminal domain RDF_RS01935 PF01189 16S rRNA methyltransferase RsmB/F RDF_RS01935 PF01029 NusB family RDF_RS01945 PF00069 Protein kinase domain RDF_RS01945 PF03793 PASTA domain RDF_RS01955 PF07730 Histidine kinase RDF_RS01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS01955 PF00672 HAMP domain RDF_RS01960 PF00072 Response regulator receiver domain RDF_RS01960 PF00196 Bacterial regulatory proteins, luxR family RDF_RS01965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RDF_RS01970 PF00575 S1 RNA binding domain RDF_RS01975 PF04055 Radical SAM superfamily RDF_RS01980 PF08220 DeoR-like helix-turn-helix domain RDF_RS01980 PF00455 DeoR C terminal sensor domain RDF_RS01985 PF04198 Putative sugar-binding domain RDF_RS01985 PF13936 Helix-turn-helix domain RDF_RS01990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RDF_RS02000 PF02378 Phosphotransferase system, EIIC RDF_RS02005 PF01228 Glycine radical RDF_RS02005 PF02901 Pyruvate formate lyase-like RDF_RS02010 PF00923 Transaldolase/Fructose-6-phosphate aldolase RDF_RS02015 PF00465 Iron-containing alcohol dehydrogenase RDF_RS02020 PF00291 Pyridoxal-phosphate dependent enzyme RDF_RS02025 PF01205 Uncharacterized protein family UPF0029 RDF_RS02025 PF09186 Domain of unknown function (DUF1949) RDF_RS02030 PF04851 Type III restriction enzyme, res subunit RDF_RS02030 PF00271 Helicase conserved C-terminal domain RDF_RS02040 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RDF_RS02040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RDF_RS02070 PF13840 ACT domain RDF_RS02070 PF00696 Amino acid kinase family RDF_RS02075 PF13419 Haloacid dehalogenase-like hydrolase RDF_RS02080 PF00378 Enoyl-CoA hydratase/isomerase RDF_RS02090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RDF_RS02090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RDF_RS02095 PF00550 Phosphopantetheine attachment site RDF_RS02100 PF03060 Nitronate monooxygenase RDF_RS02105 PF00698 Acyl transferase domain RDF_RS02115 PF00109 Beta-ketoacyl synthase, N-terminal domain RDF_RS02115 PF02801 Beta-ketoacyl synthase, C-terminal domain RDF_RS02120 PF00364 Biotin-requiring enzyme RDF_RS02125 PF07977 FabA-like domain RDF_RS02130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RDF_RS02130 PF00289 Biotin carboxylase, N-terminal domain RDF_RS02130 PF02785 Biotin carboxylase C-terminal domain RDF_RS02135 PF17848 Acetyl-coA carboxylase zinc finger domain RDF_RS02135 PF01039 Carboxyl transferase domain RDF_RS02140 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RDF_RS02150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RDF_RS02150 PF02403 Seryl-tRNA synthetase N-terminal domain RDF_RS02165 PF03613 PTS system mannose/fructose/sorbose family IID component RDF_RS02170 PF03609 PTS system sorbose-specific iic component RDF_RS02175 PF03610 PTS system fructose IIA component RDF_RS02175 PF03830 PTS system sorbose subfamily IIB component RDF_RS02195 PF00860 Permease family RDF_RS02200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RDF_RS02205 PF13302 Acetyltransferase (GNAT) domain RDF_RS02210 PF03816 Cell envelope-related transcriptional attenuator domain RDF_RS02220 PF01230 HIT domain RDF_RS02235 PF00005 ABC transporter RDF_RS02240 PF05975 Bacterial ABC transporter protein EcsB RDF_RS02250 PF02390 Putative methyltransferase RDF_RS02260 PF17384 RimP C-terminal SH3 domain RDF_RS02260 PF02576 RimP N-terminal domain RDF_RS02265 PF00575 S1 RNA binding domain RDF_RS02265 PF08529 NusA N-terminal domain RDF_RS02265 PF13184 NusA-like KH domain RDF_RS02270 PF04296 Protein of unknown function (DUF448) RDF_RS02275 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RDF_RS02280 PF04760 Translation initiation factor IF-2, N-terminal region RDF_RS02280 PF00009 Elongation factor Tu GTP binding domain RDF_RS02280 PF11987 Translation-initiation factor 2 RDF_RS02285 PF02033 Ribosome-binding factor A RDF_RS02290 PF07859 alpha/beta hydrolase fold RDF_RS02295 PF03965 Penicillinase repressor RDF_RS02300 PF00403 Heavy-metal-associated domain RDF_RS02310 PF03458 UPF0126 domain RDF_RS02320 PF01367 5'-3' exonuclease, C-terminal SAM fold RDF_RS02320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RDF_RS02320 PF00476 DNA polymerase family A RDF_RS02325 PF13380 CoA binding domain RDF_RS02330 PF01475 Ferric uptake regulator family RDF_RS02340 PF00072 Response regulator receiver domain RDF_RS02340 PF00486 Transcriptional regulatory protein, C terminal RDF_RS02345 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS02345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS02355 PF01702 Queuine tRNA-ribosyltransferase RDF_RS02365 PF02632 BioY family RDF_RS02370 PF12706 Beta-lactamase superfamily domain RDF_RS02375 PF14437 MafB19-like deaminase RDF_RS02385 PF00342 Phosphoglucose isomerase RDF_RS02390 PF01812 5-formyltetrahydrofolate cyclo-ligase family RDF_RS02395 PF01694 Rhomboid family RDF_RS02400 PF02608 ABC transporter substrate-binding protein PnrA-like RDF_RS02405 PF00483 Nucleotidyl transferase RDF_RS02410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RDF_RS02410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RDF_RS02415 PF00825 Ribonuclease P RDF_RS02420 PF02096 60Kd inner membrane protein RDF_RS02470 PF04167 Protein of unknown function (DUF402) RDF_RS02475 PF02631 RecX family RDF_RS02480 PF05958 tRNA (Uracil-5-)-methyltransferase RDF_RS02480 PF01938 TRAM domain RDF_RS02490 PF13673 Acetyltransferase (GNAT) domain RDF_RS02495 PF06280 Fn3-like domain RDF_RS02495 PF02225 PA domain RDF_RS02495 PF00082 Subtilase family RDF_RS02500 PF01501 Glycosyl transferase family 8 RDF_RS02500 PF00535 Glycosyl transferase family 2 RDF_RS02505 PF00268 Ribonucleotide reductase, small chain RDF_RS02510 PF07972 NrdI Flavodoxin like RDF_RS02515 PF02867 Ribonucleotide reductase, barrel domain RDF_RS02515 PF08343 Ribonucleotide reductase N-terminal RDF_RS02515 PF00317 Ribonucleotide reductase, all-alpha domain RDF_RS02545 PF13411 MerR HTH family regulatory protein RDF_RS02555 PF00248 Aldo/keto reductase family RDF_RS02560 PF01545 Cation efflux family RDF_RS02570 PF12833 Helix-turn-helix domain RDF_RS02575 PF17480 AlphaC C-terminal RDF_RS02575 PF00746 LPXTG cell wall anchor motif RDF_RS02575 PF04650 YSIRK type signal peptide RDF_RS02575 PF08829 Alpha C protein N terminal RDF_RS02630 PF13302 Acetyltransferase (GNAT) domain RDF_RS02640 PF00133 tRNA synthetases class I (I, L, M and V) RDF_RS02640 PF10458 Valyl tRNA synthetase tRNA binding arm RDF_RS02640 PF08264 Anticodon-binding domain of tRNA RDF_RS02650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RDF_RS02650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RDF_RS02660 PF04237 YjbR RDF_RS02665 PF03590 Aspartate-ammonia ligase RDF_RS02685 PF01467 Cytidylyltransferase-like RDF_RS02690 PF05362 Lon protease (S16) C-terminal proteolytic domain RDF_RS02690 PF13180 PDZ domain RDF_RS02695 PF02872 5'-nucleotidase, C-terminal domain RDF_RS02700 PF06265 Protein of unknown function (DUF1027) RDF_RS02705 PF04055 Radical SAM superfamily RDF_RS02715 PF00005 ABC transporter RDF_RS02715 PF00664 ABC transporter transmembrane region RDF_RS02720 PF00005 ABC transporter RDF_RS02720 PF00664 ABC transporter transmembrane region RDF_RS02725 PF00117 Glutamine amidotransferase class-I RDF_RS02730 PF02632 BioY family RDF_RS02735 PF04055 Radical SAM superfamily RDF_RS02735 PF06968 Biotin and Thiamin Synthesis associated domain RDF_RS02745 PF02803 Thiolase, C-terminal domain RDF_RS02745 PF00108 Thiolase, N-terminal domain RDF_RS02755 PF00730 HhH-GPD superfamily base excision DNA repair protein RDF_RS02755 PF10576 Iron-sulfur binding domain of endonuclease III RDF_RS02755 PF00633 Helix-hairpin-helix motif RDF_RS02770 PF00480 ROK family RDF_RS02775 PF00581 Rhodanese-like domain RDF_RS02780 PF14492 Elongation Factor G, domain II RDF_RS02780 PF00009 Elongation factor Tu GTP binding domain RDF_RS02780 PF00679 Elongation factor G C-terminus RDF_RS02780 PF03144 Elongation factor Tu domain 2 RDF_RS02790 PF02875 Mur ligase family, glutamate ligase domain RDF_RS02790 PF08245 Mur ligase middle domain RDF_RS02795 PF03033 Glycosyltransferase family 28 N-terminal domain RDF_RS02795 PF04101 Glycosyltransferase family 28 C-terminal domain RDF_RS02800 PF08478 POTRA domain, FtsQ-type RDF_RS02805 PF11983 Membrane-attachment and polymerisation-promoting switch RDF_RS02805 PF02491 SHS2 domain inserted in FTSA RDF_RS02810 PF12327 FtsZ family, C-terminal domain RDF_RS02810 PF00091 Tubulin/FtsZ family, GTPase domain RDF_RS02815 PF01168 Alanine racemase, N-terminal domain RDF_RS02820 PF04472 Cell division protein SepF RDF_RS02825 PF02325 YGGT family RDF_RS02830 PF17774 Putative RNA-binding domain in YlmH RDF_RS02830 PF01479 S4 domain RDF_RS02835 PF05103 DivIVA protein RDF_RS02840 PF00133 tRNA synthetases class I (I, L, M and V) RDF_RS02840 PF08264 Anticodon-binding domain of tRNA RDF_RS02850 PF00293 NUDIX domain RDF_RS02855 PF07724 AAA domain (Cdc48 subfamily) RDF_RS02855 PF17871 AAA lid domain RDF_RS02855 PF00004 ATPase family associated with various cellular activities (AAA) RDF_RS02855 PF10431 C-terminal, D2-small domain, of ClpB protein RDF_RS02860 PF08796 Protein of unknown function (DUF1797) RDF_RS02865 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS02870 PF00005 ABC transporter RDF_RS02875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RDF_RS02875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RDF_RS02875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RDF_RS02875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RDF_RS02880 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RDF_RS02880 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RDF_RS02885 PF01256 Carbohydrate kinase RDF_RS02890 PF02601 Exonuclease VII, large subunit RDF_RS02890 PF13742 OB-fold nucleic acid binding domain RDF_RS02895 PF02609 Exonuclease VII small subunit RDF_RS02900 PF00348 Polyprenyl synthetase RDF_RS02905 PF01479 S4 domain RDF_RS02905 PF01728 FtsJ-like methyltransferase RDF_RS02910 PF02863 Arginine repressor, C-terminal domain RDF_RS02910 PF01316 Arginine repressor, DNA binding domain RDF_RS02915 PF13476 AAA domain RDF_RS02920 PF02645 Uncharacterised protein, DegV family COG1307 RDF_RS02925 PF13472 GDSL-like Lipase/Acylhydrolase family RDF_RS02935 PF00216 Bacterial DNA-binding protein RDF_RS02945 PF01180 Dihydroorotate dehydrogenase RDF_RS02955 PF02388 FemAB family RDF_RS02960 PF02388 FemAB family RDF_RS02970 PF01966 HD domain RDF_RS02980 PF00689 Cation transporting ATPase, C-terminus RDF_RS02980 PF00690 Cation transporter/ATPase, N-terminus RDF_RS02990 PF06874 Firmicute fructose-1,6-bisphosphatase RDF_RS02995 PF08331 Domain of unknown function (DUF1730) RDF_RS03000 PF03462 PCRF domain RDF_RS03000 PF00472 RF-1 domain RDF_RS03005 PF00005 ABC transporter RDF_RS03010 PF02687 FtsX-like permease family RDF_RS03010 PF18075 FtsX extracellular domain RDF_RS03020 PF00753 Metallo-beta-lactamase superfamily RDF_RS03030 PF00929 Exonuclease RDF_RS03030 PF04851 Type III restriction enzyme, res subunit RDF_RS03030 PF13307 Helicase C-terminal domain RDF_RS03035 PF00155 Aminotransferase class I and II RDF_RS03040 PF00152 tRNA synthetases class II (D, K and N) RDF_RS03040 PF01336 OB-fold nucleic acid binding domain RDF_RS03050 PF01156 Inosine-uridine preferring nucleoside hydrolase RDF_RS03060 PF03668 P-loop ATPase protein family RDF_RS03065 PF01933 Uncharacterised protein family UPF0052 RDF_RS03070 PF10298 WhiA N-terminal LAGLIDADG-like domain RDF_RS03070 PF14527 WhiA LAGLIDADG-like domain RDF_RS03070 PF02650 WhiA C-terminal HTH domain RDF_RS03075 PF03577 Peptidase family C69 RDF_RS03080 PF01297 Zinc-uptake complex component A periplasmic RDF_RS03080 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RDF_RS03085 PF01197 Ribosomal protein L31 RDF_RS03090 PF02272 DHHA1 domain RDF_RS03090 PF01368 DHH family RDF_RS03095 PF00962 Adenosine/AMP deaminase RDF_RS03100 PF00258 Flavodoxin RDF_RS03105 PF00793 DAHP synthetase I family RDF_RS03105 PF01817 Chorismate mutase type II RDF_RS03110 PF00654 Voltage gated chloride channel RDF_RS03115 PF01245 Ribosomal protein L19 RDF_RS03150 PF00005 ABC transporter RDF_RS03160 PF00072 Response regulator receiver domain RDF_RS03160 PF00486 Transcriptional regulatory protein, C terminal RDF_RS03165 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS03165 PF00672 HAMP domain RDF_RS03170 PF13683 Integrase core domain RDF_RS03170 PF01610 Transposase RDF_RS03175 PF05532 CsbD-like RDF_RS03180 PF01098 Cell cycle protein RDF_RS03190 PF00204 DNA gyrase B RDF_RS03190 PF00986 DNA gyrase B subunit, carboxyl terminus RDF_RS03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS03190 PF01751 Toprim domain RDF_RS03195 PF06160 Septation ring formation regulator, EzrA RDF_RS03215 PF00113 Enolase, C-terminal TIM barrel domain RDF_RS03215 PF03952 Enolase, N-terminal domain RDF_RS03225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RDF_RS03230 PF01202 Shikimate kinase RDF_RS03235 PF03816 Cell envelope-related transcriptional attenuator domain RDF_RS03240 PF05958 tRNA (Uracil-5-)-methyltransferase RDF_RS03250 PF00589 Phage integrase family RDF_RS03250 PF02920 DNA binding domain of tn916 integrase RDF_RS03255 PF09035 Excisionase from transposon Tn916 RDF_RS03280 PF00009 Elongation factor Tu GTP binding domain RDF_RS03280 PF14492 Elongation Factor G, domain II RDF_RS03280 PF03764 Elongation factor G, domain IV RDF_RS03280 PF00679 Elongation factor G C-terminus RDF_RS03290 PF00877 NlpC/P60 family RDF_RS03320 PF18106 Rolling Circle replication initiation protein N-terminal domain RDF_RS03320 PF02486 Replication initiation factor RDF_RS03335 PF06125 Bacterial protein of unknown function (DUF961) RDF_RS03345 PF04650 YSIRK type signal peptide RDF_RS03345 PF08829 Alpha C protein N terminal RDF_RS03345 PF00746 LPXTG cell wall anchor motif RDF_RS03345 PF17480 AlphaC C-terminal RDF_RS03345 PF08829 Alpha C protein N terminal RDF_RS03345 PF17480 AlphaC C-terminal RDF_RS03345 PF00746 LPXTG cell wall anchor motif RDF_RS03345 PF04650 YSIRK type signal peptide RDF_RS03365 PF01367 5'-3' exonuclease, C-terminal SAM fold RDF_RS03365 PF01612 3'-5' exonuclease RDF_RS03365 PF00476 DNA polymerase family A RDF_RS03365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RDF_RS03410 PF00438 S-adenosylmethionine synthetase, N-terminal domain RDF_RS03410 PF02773 S-adenosylmethionine synthetase, C-terminal domain RDF_RS03410 PF02772 S-adenosylmethionine synthetase, central domain RDF_RS03425 PF01555 DNA methylase RDF_RS03430 PF00145 C-5 cytosine-specific DNA methylase RDF_RS03470 PF00574 Clp protease RDF_RS03530 PF05105 Bacteriophage holin family RDF_RS03535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS03535 PF13457 GW (Gly-Tryp) dipeptide domain RDF_RS03540 PF07508 Recombinase RDF_RS03540 PF13408 Recombinase zinc beta ribbon domain RDF_RS03545 PF00239 Resolvase, N terminal domain RDF_RS03545 PF02796 Helix-turn-helix domain of resolvase RDF_RS03555 PF00211 Adenylate and Guanylate cyclase catalytic domain RDF_RS03555 PF00069 Protein kinase domain RDF_RS03565 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RDF_RS03585 PF00746 LPXTG cell wall anchor motif RDF_RS03585 PF04650 YSIRK type signal peptide RDF_RS03585 PF08829 Alpha C protein N terminal RDF_RS03585 PF17480 AlphaC C-terminal RDF_RS03590 PF13683 Integrase core domain RDF_RS03590 PF01610 Transposase RDF_RS03600 PF01430 Hsp33 protein RDF_RS03660 PF00144 Beta-lactamase RDF_RS03665 PF00005 ABC transporter RDF_RS03695 PF00550 Phosphopantetheine attachment site RDF_RS03700 PF07977 FabA-like domain RDF_RS03705 PF00005 ABC transporter RDF_RS03720 PF01571 Aminomethyltransferase folate-binding domain RDF_RS03720 PF08669 Glycine cleavage T-protein C-terminal barrel domain RDF_RS03725 PF02801 Beta-ketoacyl synthase, C-terminal domain RDF_RS03725 PF00109 Beta-ketoacyl synthase, N-terminal domain RDF_RS03745 PF06696 Streptococcal surface antigen repeat RDF_RS03745 PF16364 Cell surface antigen C-terminus RDF_RS03745 PF17998 Cell surface antigen I/II C2 terminal domain RDF_RS03745 PF18652 Adhesin P1 N-terminal domain RDF_RS03745 PF00746 LPXTG cell wall anchor motif RDF_RS03745 PF08363 Glucan-binding protein C RDF_RS03750 PF00082 Subtilase family RDF_RS03750 PF00746 LPXTG cell wall anchor motif RDF_RS03750 PF02225 PA domain RDF_RS03750 PF06280 Fn3-like domain RDF_RS03760 PF05649 Peptidase family M13 RDF_RS03760 PF01431 Peptidase family M13 RDF_RS03765 PF05649 Peptidase family M13 RDF_RS03765 PF01431 Peptidase family M13 RDF_RS03805 PF00005 ABC transporter RDF_RS03815 PF01223 DNA/RNA non-specific endonuclease RDF_RS03820 PF09335 SNARE associated Golgi protein RDF_RS03825 PF00005 ABC transporter RDF_RS03830 PF03649 Uncharacterised protein family (UPF0014) RDF_RS03840 PF03466 LysR substrate binding domain RDF_RS03840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RDF_RS03850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RDF_RS03850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RDF_RS03860 PF00294 pfkB family carbohydrate kinase RDF_RS03865 PF02837 Glycosyl hydrolases family 2, sugar binding domain RDF_RS03865 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RDF_RS03865 PF00703 Glycosyl hydrolases family 2 RDF_RS03870 PF00392 Bacterial regulatory proteins, gntR family RDF_RS03870 PF07729 FCD domain RDF_RS03875 PF01081 KDPG and KHG aldolase RDF_RS03880 PF02614 Glucuronate isomerase RDF_RS03885 PF03786 D-mannonate dehydratase (UxuA) RDF_RS03890 PF00106 short chain dehydrogenase RDF_RS03900 PF00933 Glycosyl hydrolase family 3 N terminal domain RDF_RS03905 PF01321 Creatinase/Prolidase N-terminal domain RDF_RS03905 PF00557 Metallopeptidase family M24 RDF_RS03910 PF00356 Bacterial regulatory proteins, lacI family RDF_RS03915 PF00128 Alpha amylase, catalytic domain RDF_RS03915 PF09154 Domain of unknown function (DUF1939) RDF_RS03920 PF13439 Glycosyltransferase Family 4 RDF_RS03920 PF00534 Glycosyl transferases group 1 RDF_RS03925 PF00534 Glycosyl transferases group 1 RDF_RS03925 PF13439 Glycosyltransferase Family 4 RDF_RS03930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RDF_RS03930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RDF_RS03930 PF02824 TGS domain RDF_RS03930 PF03129 Anticodon binding domain RDF_RS03935 PF00486 Transcriptional regulatory protein, C terminal RDF_RS03935 PF00072 Response regulator receiver domain RDF_RS03945 PF03413 Peptidase propeptide and YPEB domain RDF_RS03950 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS03955 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS03960 PF00497 Bacterial extracellular solute-binding proteins, family 3 RDF_RS03965 PF00005 ABC transporter RDF_RS03970 PF00072 Response regulator receiver domain RDF_RS03970 PF00486 Transcriptional regulatory protein, C terminal RDF_RS03975 PF13426 PAS domain RDF_RS03975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS03975 PF00672 HAMP domain RDF_RS03975 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS03980 PF00753 Metallo-beta-lactamase superfamily RDF_RS03985 PF04304 Protein of unknown function (DUF454) RDF_RS03990 PF00035 Double-stranded RNA binding motif RDF_RS03990 PF14622 Ribonuclease-III-like RDF_RS03995 PF02463 RecF/RecN/SMC N terminal domain RDF_RS03995 PF06470 SMC proteins Flexible Hinge Domain RDF_RS04010 PF00448 SRP54-type protein, GTPase domain RDF_RS04010 PF02881 SRP54-type protein, helical bundle domain RDF_RS04015 PF09323 Domain of unknown function (DUF1980) RDF_RS04020 PF03773 Predicted permease RDF_RS04035 PF09371 Tex-like protein N-terminal domain RDF_RS04035 PF00575 S1 RNA binding domain RDF_RS04035 PF16921 Tex protein YqgF-like domain RDF_RS04035 PF17674 HHH domain RDF_RS04040 PF10263 SprT-like family RDF_RS04045 PF04024 PspC domain RDF_RS04050 PF07475 HPr Serine kinase C-terminal domain RDF_RS04050 PF02603 HPr Serine kinase N terminus RDF_RS04055 PF01790 Prolipoprotein diacylglyceryl transferase RDF_RS04065 PF12732 YtxH-like protein RDF_RS04080 PF16325 Peptidase family U32 C-terminal domain RDF_RS04080 PF01136 Peptidase family U32 RDF_RS04085 PF02229 Transcriptional Coactivator p15 (PC4) RDF_RS04095 PF01566 Natural resistance-associated macrophage protein RDF_RS04100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RDF_RS04100 PF01872 RibD C-terminal domain RDF_RS04105 PF00677 Lumazine binding domain RDF_RS04110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RDF_RS04110 PF00925 GTP cyclohydrolase II RDF_RS04115 PF00885 6,7-dimethyl-8-ribityllumazine synthase RDF_RS04120 PF01336 OB-fold nucleic acid binding domain RDF_RS04120 PF00152 tRNA synthetases class II (D, K and N) RDF_RS04135 PF04073 Aminoacyl-tRNA editing domain RDF_RS04140 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RDF_RS04160 PF01432 Peptidase family M3 RDF_RS04160 PF08439 Oligopeptidase F RDF_RS04165 PF00311 Phosphoenolpyruvate carboxylase RDF_RS04170 PF01098 Cell cycle protein RDF_RS04175 PF03144 Elongation factor Tu domain 2 RDF_RS04175 PF00009 Elongation factor Tu GTP binding domain RDF_RS04175 PF03143 Elongation factor Tu C-terminal domain RDF_RS04180 PF00121 Triosephosphate isomerase RDF_RS04185 PF00300 Histidine phosphatase superfamily (branch 1) RDF_RS04190 PF00905 Penicillin binding protein transpeptidase domain RDF_RS04190 PF03717 Penicillin-binding Protein dimerisation domain RDF_RS04195 PF13662 Toprim domain RDF_RS04195 PF02132 RecR protein RDF_RS04200 PF07478 D-ala D-ala ligase C-terminus RDF_RS04200 PF01820 D-ala D-ala ligase N-terminus RDF_RS04205 PF01225 Mur ligase family, catalytic domain RDF_RS04205 PF08245 Mur ligase middle domain RDF_RS04205 PF02875 Mur ligase family, glutamate ligase domain RDF_RS04210 PF07690 Major Facilitator Superfamily RDF_RS04225 PF03144 Elongation factor Tu domain 2 RDF_RS04225 PF00009 Elongation factor Tu GTP binding domain RDF_RS04225 PF16658 Class II release factor RF3, C-terminal domain RDF_RS04230 PF08000 Bacterial PH domain RDF_RS04235 PF09383 NIL domain RDF_RS04235 PF00005 ABC transporter RDF_RS04240 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS04245 PF03180 NLPA lipoprotein RDF_RS04250 PF00271 Helicase conserved C-terminal domain RDF_RS04250 PF00270 DEAD/DEAH box helicase RDF_RS04255 PF01541 GIY-YIG catalytic domain RDF_RS04260 PF05175 Methyltransferase small domain RDF_RS04265 PF01553 Acyltransferase RDF_RS04270 PF10531 SLBB domain RDF_RS04275 PF03772 Competence protein RDF_RS04275 PF13567 Domain of unknown function (DUF4131) RDF_RS04275 PF00753 Metallo-beta-lactamase superfamily RDF_RS04285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RDF_RS04285 PF00356 Bacterial regulatory proteins, lacI family RDF_RS04290 PF00934 PE family RDF_RS04290 PF07859 alpha/beta hydrolase fold RDF_RS04295 PF01209 ubiE/COQ5 methyltransferase family RDF_RS04305 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RDF_RS04305 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RDF_RS04310 PF00874 PRD domain RDF_RS04310 PF03123 CAT RNA binding domain RDF_RS04315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RDF_RS04315 PF02378 Phosphotransferase system, EIIC RDF_RS04315 PF00367 phosphotransferase system, EIIB RDF_RS04320 PF00232 Glycosyl hydrolase family 1 RDF_RS04325 PF13556 PucR C-terminal helix-turn-helix domain RDF_RS04325 PF17853 GGDEF-like domain RDF_RS04325 PF05651 Putative sugar diacid recognition RDF_RS04330 PF02595 Glycerate kinase family RDF_RS04335 PF02447 GntP family permease RDF_RS04345 PF01047 MarR family RDF_RS04350 PF02547 Queuosine biosynthesis protein RDF_RS04360 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RDF_RS04365 PF13409 Glutathione S-transferase, N-terminal domain RDF_RS04370 PF00849 RNA pseudouridylate synthase RDF_RS04370 PF01479 S4 domain RDF_RS04385 PF08439 Oligopeptidase F RDF_RS04385 PF01432 Peptidase family M3 RDF_RS04395 PF01596 O-methyltransferase RDF_RS04400 PF13145 PPIC-type PPIASE domain RDF_RS04405 PF04525 LURP-one-related RDF_RS04410 PF02272 DHHA1 domain RDF_RS04410 PF01411 tRNA synthetases class II (A) RDF_RS04410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RDF_RS04420 PF01501 Glycosyl transferase family 8 RDF_RS04420 PF08437 Glycosyl transferase family 8 C-terminal RDF_RS04435 PF01381 Helix-turn-helix RDF_RS04445 PF09515 Thiamine transporter protein (Thia_YuaJ) RDF_RS04450 PF00268 Ribonucleotide reductase, small chain RDF_RS04455 PF02867 Ribonucleotide reductase, barrel domain RDF_RS04455 PF00317 Ribonucleotide reductase, all-alpha domain RDF_RS04455 PF08343 Ribonucleotide reductase N-terminal RDF_RS04460 PF00462 Glutaredoxin RDF_RS04465 PF00381 PTS HPr component phosphorylation site RDF_RS04470 PF00391 PEP-utilising enzyme, mobile domain RDF_RS04470 PF05524 PEP-utilising enzyme, N-terminal RDF_RS04470 PF02896 PEP-utilising enzyme, TIM barrel domain RDF_RS04475 PF00171 Aldehyde dehydrogenase family RDF_RS04480 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain RDF_RS04480 PF01522 Polysaccharide deacetylase RDF_RS04485 PF00271 Helicase conserved C-terminal domain RDF_RS04485 PF00270 DEAD/DEAH box helicase RDF_RS04490 PF00485 Phosphoribulokinase / Uridine kinase family RDF_RS04495 PF13185 GAF domain RDF_RS04500 PF12169 DNA polymerase III subunits gamma and tau domain III RDF_RS04510 PF02237 Biotin protein ligase C terminal domain RDF_RS04510 PF03099 Biotin/lipoate A/B protein ligase family RDF_RS04510 PF08279 HTH domain RDF_RS04515 PF02773 S-adenosylmethionine synthetase, C-terminal domain RDF_RS04515 PF02772 S-adenosylmethionine synthetase, central domain RDF_RS04515 PF00438 S-adenosylmethionine synthetase, N-terminal domain RDF_RS04525 PF08764 Staphylococcus aureus coagulase RDF_RS04525 PF04022 Staphylocoagulase repeat RDF_RS04540 PF09819 ABC-type cobalt transport system, permease component RDF_RS04545 PF00005 ABC transporter RDF_RS04555 PF03070 TENA/THI-4/PQQC family RDF_RS04560 PF08543 Phosphomethylpyrimidine kinase RDF_RS04565 PF02110 Hydroxyethylthiazole kinase family RDF_RS04570 PF02581 Thiamine monophosphate synthase RDF_RS04575 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RDF_RS04585 PF03061 Thioesterase superfamily RDF_RS04585 PF00571 CBS domain RDF_RS04585 PF00392 Bacterial regulatory proteins, gntR family RDF_RS04585 PF07085 DRTGG domain RDF_RS04590 PF00557 Metallopeptidase family M24 RDF_RS04600 PF04138 GtrA-like protein RDF_RS04605 PF06177 QueT transporter RDF_RS04610 PF01653 NAD-dependent DNA ligase adenylation domain RDF_RS04610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RDF_RS04610 PF00533 BRCA1 C Terminus (BRCT) domain RDF_RS04610 PF03120 NAD-dependent DNA ligase OB-fold domain RDF_RS04610 PF12826 Helix-hairpin-helix motif RDF_RS04615 PF00781 Diacylglycerol kinase catalytic domain RDF_RS04620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RDF_RS04620 PF17999 Pullulanase N1-terminal domain RDF_RS04620 PF00128 Alpha amylase, catalytic domain RDF_RS04625 PF00128 Alpha amylase, catalytic domain RDF_RS04625 PF02806 Alpha amylase, C-terminal all-beta domain RDF_RS04625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RDF_RS04630 PF00483 Nucleotidyl transferase RDF_RS04630 PF00132 Bacterial transferase hexapeptide (six repeats) RDF_RS04635 PF00483 Nucleotidyl transferase RDF_RS04640 PF08323 Starch synthase catalytic domain RDF_RS04640 PF00534 Glycosyl transferases group 1 RDF_RS04645 PF00137 ATP synthase subunit C RDF_RS04650 PF00119 ATP synthase A chain RDF_RS04655 PF00430 ATP synthase B/B' CF(0) RDF_RS04660 PF00213 ATP synthase delta (OSCP) subunit RDF_RS04665 PF00306 ATP synthase alpha/beta chain, C terminal domain RDF_RS04665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RDF_RS04665 PF02874 ATP synthase alpha/beta family, beta-barrel domain RDF_RS04670 PF00231 ATP synthase RDF_RS04675 PF02874 ATP synthase alpha/beta family, beta-barrel domain RDF_RS04675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RDF_RS04680 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RDF_RS04680 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RDF_RS04690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RDF_RS04700 PF01223 DNA/RNA non-specific endonuclease RDF_RS04705 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RDF_RS04705 PF01409 tRNA synthetases class II core domain (F) RDF_RS04710 PF13673 Acetyltransferase (GNAT) domain RDF_RS04715 PF03147 Ferredoxin-fold anticodon binding domain RDF_RS04715 PF03483 B3/4 domain RDF_RS04715 PF01588 Putative tRNA binding domain RDF_RS04715 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RDF_RS04715 PF03484 tRNA synthetase B5 domain RDF_RS04720 PF04228 Putative neutral zinc metallopeptidase RDF_RS04725 PF12705 PD-(D/E)XK nuclease superfamily RDF_RS04730 PF13361 UvrD-like helicase C-terminal domain RDF_RS04730 PF00580 UvrD/REP helicase N-terminal domain RDF_RS04730 PF12705 PD-(D/E)XK nuclease superfamily RDF_RS04740 PF10396 GTP-binding protein TrmE N-terminus RDF_RS04740 PF12631 MnmE helical domain RDF_RS04740 PF01926 50S ribosome-binding GTPase RDF_RS04745 PF16326 ABC transporter C-terminal domain RDF_RS04745 PF12848 ABC transporter RDF_RS04745 PF00005 ABC transporter RDF_RS04750 PF00676 Dehydrogenase E1 component RDF_RS04755 PF02779 Transketolase, pyrimidine binding domain RDF_RS04755 PF00364 Biotin-requiring enzyme RDF_RS04755 PF02780 Transketolase, C-terminal domain RDF_RS04760 PF02817 e3 binding domain RDF_RS04760 PF00364 Biotin-requiring enzyme RDF_RS04760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RDF_RS04765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RDF_RS04765 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS04770 PF10437 Bacterial lipoate protein ligase C-terminus RDF_RS04770 PF03099 Biotin/lipoate A/B protein ligase family RDF_RS04775 PF07685 CobB/CobQ-like glutamine amidotransferase domain RDF_RS04780 PF08353 Domain of unknown function (DUF1727) RDF_RS04780 PF08245 Mur ligase middle domain RDF_RS04785 PF02457 DisA bacterial checkpoint controller nucleotide-binding RDF_RS04795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RDF_RS04795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RDF_RS04795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RDF_RS04795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RDF_RS04810 PF06969 HemN C-terminal domain RDF_RS04810 PF04055 Radical SAM superfamily RDF_RS04820 PF13344 Haloacid dehalogenase-like hydrolase RDF_RS04830 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 RDF_RS04830 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 RDF_RS04830 PF13395 HNH endonuclease RDF_RS04830 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 RDF_RS04835 PF01867 CRISPR associated protein Cas1 RDF_RS04840 PF09827 CRISPR associated protein Cas2 RDF_RS04845 PF09711 CRISPR-associated protein (Cas_Csn2) RDF_RS04855 PF00334 Nucleoside diphosphate kinase RDF_RS04860 PF00679 Elongation factor G C-terminus RDF_RS04860 PF03144 Elongation factor Tu domain 2 RDF_RS04860 PF06421 GTP-binding protein LepA C-terminus RDF_RS04860 PF00009 Elongation factor Tu GTP binding domain RDF_RS04870 PF01966 HD domain RDF_RS04875 PF13673 Acetyltransferase (GNAT) domain RDF_RS04880 PF01641 SelR domain RDF_RS04895 PF00132 Bacterial transferase hexapeptide (six repeats) RDF_RS04910 PF00005 ABC transporter RDF_RS04915 PF00392 Bacterial regulatory proteins, gntR family RDF_RS04920 PF02811 PHP domain RDF_RS04920 PF01336 OB-fold nucleic acid binding domain RDF_RS04920 PF14579 Helix-hairpin-helix motif RDF_RS04920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RDF_RS04920 PF07733 Bacterial DNA polymerase III alpha NTPase domain RDF_RS04925 PF00365 Phosphofructokinase RDF_RS04930 PF02887 Pyruvate kinase, alpha/beta domain RDF_RS04930 PF00224 Pyruvate kinase, barrel domain RDF_RS04935 PF10502 Signal peptidase, peptidase S26 RDF_RS04940 PF01380 SIS domain RDF_RS04945 PF03831 PhnA domain RDF_RS04945 PF08274 PhnA Zinc-Ribbon RDF_RS04950 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS04955 PF00005 ABC transporter RDF_RS04965 PF01649 Ribosomal protein S20 RDF_RS04970 PF00485 Phosphoribulokinase / Uridine kinase family RDF_RS04975 PF05175 Methyltransferase small domain RDF_RS04980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RDF_RS04985 PF02608 ABC transporter substrate-binding protein PnrA-like RDF_RS04990 PF00005 ABC transporter RDF_RS04995 PF02653 Branched-chain amino acid transport system / permease component RDF_RS05000 PF02653 Branched-chain amino acid transport system / permease component RDF_RS05005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RDF_RS05005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS05010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RDF_RS05010 PF00056 lactate/malate dehydrogenase, NAD binding domain RDF_RS05015 PF00521 DNA gyrase/topoisomerase IV, subunit A RDF_RS05015 PF03989 DNA gyrase C-terminal domain, beta-propeller RDF_RS05020 PF04203 Sortase domain RDF_RS05025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RDF_RS05035 PF00999 Sodium/hydrogen exchanger family RDF_RS05100 PF00958 GMP synthase C terminal domain RDF_RS05100 PF02540 NAD synthase RDF_RS05100 PF00117 Glutamine amidotransferase class-I RDF_RS05105 PF07702 UTRA domain RDF_RS05105 PF00392 Bacterial regulatory proteins, gntR family RDF_RS05110 PF01134 Glucose inhibited division protein A RDF_RS05120 PF03180 NLPA lipoprotein RDF_RS05135 PF00005 ABC transporter RDF_RS05145 PF00072 Response regulator receiver domain RDF_RS05145 PF00486 Transcriptional regulatory protein, C terminal RDF_RS05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS05155 PF00589 Phage integrase family RDF_RS05155 PF13495 Phage integrase, N-terminal SAM-like domain RDF_RS05160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RDF_RS05175 PF02881 SRP54-type protein, helical bundle domain RDF_RS05175 PF02978 Signal peptide binding domain RDF_RS05175 PF00448 SRP54-type protein, GTPase domain RDF_RS05180 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RDF_RS05185 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS05190 PF00072 Response regulator receiver domain RDF_RS05190 PF00486 Transcriptional regulatory protein, C terminal RDF_RS05195 PF01433 Peptidase family M1 domain RDF_RS05195 PF11838 ERAP1-like C-terminal domain RDF_RS05200 PF01895 PhoU domain RDF_RS05205 PF00005 ABC transporter RDF_RS05210 PF00005 ABC transporter RDF_RS05215 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS05220 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS05225 PF12849 PBP superfamily domain RDF_RS05230 PF01189 16S rRNA methyltransferase RsmB/F RDF_RS05230 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RDF_RS05230 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RDF_RS05235 PF00459 Inositol monophosphatase family RDF_RS05240 PF05256 Uncharacterised protein family (UPF0223) RDF_RS05245 PF03960 ArsC family RDF_RS05250 PF01687 Riboflavin kinase RDF_RS05250 PF06574 FAD synthetase RDF_RS05255 PF01509 TruB family pseudouridylate synthase (N terminal domain) RDF_RS05255 PF16198 tRNA pseudouridylate synthase B C-terminal domain RDF_RS05285 PF00005 ABC transporter RDF_RS05290 PF01396 Topoisomerase DNA binding C4 zinc finger RDF_RS05290 PF01751 Toprim domain RDF_RS05290 PF01131 DNA topoisomerase RDF_RS05295 PF02481 DNA recombination-mediator protein A RDF_RS05295 PF18255 DNA processing protein A sterile alpha motif domain RDF_RS05300 PF01497 Periplasmic binding protein RDF_RS05305 PF00005 ABC transporter RDF_RS05310 PF01032 FecCD transport family RDF_RS05315 PF01032 FecCD transport family RDF_RS05320 PF14602 Hexapeptide repeat of succinyl-transferase RDF_RS05320 PF12464 Maltose acetyltransferase RDF_RS05325 PF01351 Ribonuclease HII RDF_RS05330 PF01926 50S ribosome-binding GTPase RDF_RS05335 PF03734 L,D-transpeptidase catalytic domain RDF_RS05340 PF02554 Carbon starvation protein CstA RDF_RS05345 PF00072 Response regulator receiver domain RDF_RS05345 PF04397 LytTr DNA-binding domain RDF_RS05350 PF06580 Histidine kinase RDF_RS05350 PF07694 5TMR of 5TMR-LYT RDF_RS05350 PF13492 GAF domain RDF_RS05350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS05375 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS05375 PF05257 CHAP domain RDF_RS05445 PF01580 FtsK/SpoIIIE family RDF_RS05445 PF12538 DNA transporter RDF_RS05450 PF10140 WXG100 protein secretion system (Wss), protein YukC RDF_RS05470 PF06013 Proteins of 100 residues with WXG RDF_RS05475 PF06013 Proteins of 100 residues with WXG RDF_RS05490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RDF_RS05490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RDF_RS05490 PF02142 MGS-like domain RDF_RS05495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RDF_RS05495 PF00117 Glutamine amidotransferase class-I RDF_RS05500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RDF_RS05500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RDF_RS05505 PF01979 Amidohydrolase family RDF_RS05510 PF00156 Phosphoribosyl transferase domain RDF_RS05515 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RDF_RS05525 PF00005 ABC transporter RDF_RS05525 PF12848 ABC transporter RDF_RS05535 PF02774 Semialdehyde dehydrogenase, dimerisation domain RDF_RS05535 PF01118 Semialdehyde dehydrogenase, NAD binding domain RDF_RS05545 PF13091 PLD-like domain RDF_RS05550 PF01268 Formate--tetrahydrofolate ligase RDF_RS05555 PF03099 Biotin/lipoate A/B protein ligase family RDF_RS05555 PF10437 Bacterial lipoate protein ligase C-terminus RDF_RS05565 PF01661 Macro domain RDF_RS05570 PF01597 Glycine cleavage H-protein RDF_RS05580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RDF_RS05585 PF03099 Biotin/lipoate A/B protein ligase family RDF_RS05595 PF02441 Flavoprotein RDF_RS05600 PF12822 ECF transporter, substrate-specific component RDF_RS05605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RDF_RS05605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RDF_RS05605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RDF_RS05605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RDF_RS05615 PF00664 ABC transporter transmembrane region RDF_RS05615 PF00005 ABC transporter RDF_RS05620 PF00664 ABC transporter transmembrane region RDF_RS05620 PF00005 ABC transporter RDF_RS05635 PF00464 Serine hydroxymethyltransferase RDF_RS05645 PF05175 Methyltransferase small domain RDF_RS05650 PF00472 RF-1 domain RDF_RS05650 PF03462 PCRF domain RDF_RS05655 PF00265 Thymidine kinase RDF_RS05660 PF01361 Tautomerase enzyme RDF_RS05665 PF02424 ApbE family RDF_RS05670 PF03358 NADPH-dependent FMN reductase RDF_RS05670 PF04205 FMN-binding domain RDF_RS05670 PF00890 FAD binding domain RDF_RS05675 PF03358 NADPH-dependent FMN reductase RDF_RS05675 PF04205 FMN-binding domain RDF_RS05675 PF00890 FAD binding domain RDF_RS05685 PF00860 Permease family RDF_RS05690 PF00156 Phosphoribosyl transferase domain RDF_RS05695 PF00478 IMP dehydrogenase / GMP reductase domain RDF_RS05700 PF07690 Major Facilitator Superfamily RDF_RS05710 PF02705 K+ potassium transporter RDF_RS05715 PF00106 short chain dehydrogenase RDF_RS05720 PF01515 Phosphate acetyl/butaryl transferase RDF_RS05725 PF00849 RNA pseudouridylate synthase RDF_RS05730 PF01513 ATP-NAD kinase RDF_RS05735 PF04607 Region found in RelA / SpoT proteins RDF_RS05745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RDF_RS05745 PF14572 Phosphoribosyl synthetase-associated domain RDF_RS05750 PF00266 Aminotransferase class-V RDF_RS05760 PF02629 CoA binding domain RDF_RS05760 PF06971 Putative DNA-binding protein N-terminus RDF_RS05765 PF04002 RadC-like JAB domain RDF_RS05770 PF01594 AI-2E family transporter RDF_RS05775 PF00232 Glycosyl hydrolase family 1 RDF_RS05790 PF12852 Cupin RDF_RS05790 PF12833 Helix-turn-helix domain RDF_RS05795 PF00654 Voltage gated chloride channel RDF_RS05800 PF13416 Bacterial extracellular solute-binding protein RDF_RS05805 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS05810 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS05815 PF08402 TOBE domain RDF_RS05815 PF00005 ABC transporter RDF_RS05820 PF01565 FAD binding domain RDF_RS05820 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RDF_RS05825 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RDF_RS05830 PF02152 Dihydroneopterin aldolase RDF_RS05835 PF00809 Pterin binding enzyme RDF_RS05840 PF01227 GTP cyclohydrolase I RDF_RS05845 PF02875 Mur ligase family, glutamate ligase domain RDF_RS05845 PF08245 Mur ligase middle domain RDF_RS05850 PF00892 EamA-like transporter family RDF_RS05855 PF00288 GHMP kinases N terminal domain RDF_RS05855 PF08544 GHMP kinases C terminal RDF_RS05860 PF03447 Homoserine dehydrogenase, NAD binding domain RDF_RS05860 PF00742 Homoserine dehydrogenase RDF_RS05865 PF01522 Polysaccharide deacetylase RDF_RS05870 PF02028 BCCT, betaine/carnitine/choline family transporter RDF_RS05875 PF00171 Aldehyde dehydrogenase family RDF_RS05880 PF03601 Conserved hypothetical protein 698 RDF_RS05905 PF08534 Redoxin RDF_RS05925 PF03780 Asp23 family, cell envelope-related function RDF_RS05930 PF05532 CsbD-like RDF_RS05935 PF03780 Asp23 family, cell envelope-related function RDF_RS05950 PF04226 Transglycosylase associated protein RDF_RS05960 PF00580 UvrD/REP helicase N-terminal domain RDF_RS05960 PF13361 UvrD-like helicase C-terminal domain RDF_RS05970 PF00860 Permease family RDF_RS05975 PF01235 Sodium:alanine symporter family RDF_RS05980 PF01545 Cation efflux family RDF_RS05980 PF16916 Dimerisation domain of Zinc Transporter RDF_RS05985 PF03788 LrgA family RDF_RS05990 PF04172 LrgB-like family RDF_RS06020 PF00589 Phage integrase family RDF_RS06020 PF02899 Phage integrase, N-terminal SAM-like domain RDF_RS06030 PF00575 S1 RNA binding domain RDF_RS06050 PF01063 Amino-transferase class IV RDF_RS06055 PF03989 DNA gyrase C-terminal domain, beta-propeller RDF_RS06055 PF00521 DNA gyrase/topoisomerase IV, subunit A RDF_RS06060 PF00204 DNA gyrase B RDF_RS06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS06060 PF00986 DNA gyrase B subunit, carboxyl terminus RDF_RS06060 PF01751 Toprim domain RDF_RS06065 PF02660 Glycerol-3-phosphate acyltransferase RDF_RS06070 PF03167 Uracil DNA glycosylase superfamily RDF_RS06080 PF02348 Cytidylyltransferase RDF_RS06080 PF13472 GDSL-like Lipase/Acylhydrolase family RDF_RS06090 PF02350 UDP-N-acetylglucosamine 2-epimerase RDF_RS06095 PF03102 NeuB family RDF_RS06095 PF08666 SAF domain RDF_RS06100 PF01943 Polysaccharide biosynthesis protein RDF_RS06110 PF01501 Glycosyl transferase family 8 RDF_RS06110 PF00535 Glycosyl transferase family 2 RDF_RS06115 PF00535 Glycosyl transferase family 2 RDF_RS06120 PF00535 Glycosyl transferase family 2 RDF_RS06135 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RDF_RS06135 PF04101 Glycosyltransferase family 28 C-terminal domain RDF_RS06140 PF03033 Glycosyltransferase family 28 N-terminal domain RDF_RS06140 PF04101 Glycosyltransferase family 28 C-terminal domain RDF_RS06145 PF02397 Bacterial sugar transferase RDF_RS06150 PF13614 AAA domain RDF_RS06155 PF02706 Chain length determinant protein RDF_RS06165 PF03816 Cell envelope-related transcriptional attenuator domain RDF_RS06170 PF03466 LysR substrate binding domain RDF_RS06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RDF_RS06180 PF01048 Phosphorylase superfamily RDF_RS06185 PF00654 Voltage gated chloride channel RDF_RS06190 PF01048 Phosphorylase superfamily RDF_RS06195 PF03960 ArsC family RDF_RS06200 PF01676 Metalloenzyme superfamily RDF_RS06205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RDF_RS06220 PF17770 Ribonuclease J C-terminal domain RDF_RS06220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RDF_RS06220 PF00753 Metallo-beta-lactamase superfamily RDF_RS06225 PF08402 TOBE domain RDF_RS06225 PF00005 ABC transporter RDF_RS06240 PF05670 NFACT protein RNA binding domain RDF_RS06245 PF03306 Alpha-acetolactate decarboxylase RDF_RS06250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RDF_RS06250 PF00205 Thiamine pyrophosphate enzyme, central domain RDF_RS06250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RDF_RS06260 PF01594 AI-2E family transporter RDF_RS06270 PF00293 NUDIX domain RDF_RS06275 PF02278 Polysaccharide lyase family 8, super-sandwich domain RDF_RS06275 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RDF_RS06275 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RDF_RS06280 PF16363 GDP-mannose 4,6 dehydratase RDF_RS06285 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RDF_RS06290 PF00483 Nucleotidyl transferase RDF_RS06295 PF01266 FAD dependent oxidoreductase RDF_RS06300 PF01784 NIF3 (NGG1p interacting factor 3) RDF_RS06305 PF04816 tRNA (adenine(22)-N(1))-methyltransferase RDF_RS06315 PF00156 Phosphoribosyl transferase domain RDF_RS06320 PF02435 Levansucrase/Invertase RDF_RS06325 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RDF_RS06325 PF01368 DHH family RDF_RS06325 PF17768 RecJ OB domain RDF_RS06325 PF02272 DHHA1 domain RDF_RS06330 PF00106 short chain dehydrogenase RDF_RS06335 PF12706 Beta-lactamase superfamily domain RDF_RS06335 PF00753 Metallo-beta-lactamase superfamily RDF_RS06345 PF16360 GTP-binding GTPase Middle Region RDF_RS06345 PF13167 GTP-binding GTPase N-terminal RDF_RS06345 PF01926 50S ribosome-binding GTPase RDF_RS06365 PF17967 Pullulanase N2 domain RDF_RS06365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RDF_RS06365 PF11852 Domain of unknown function (DUF3372) RDF_RS06365 PF03714 Bacterial pullanase-associated domain RDF_RS06365 PF18494 Pullulanase Ins domain RDF_RS06380 PF03167 Uracil DNA glycosylase superfamily RDF_RS06385 PF01546 Peptidase family M20/M25/M40 RDF_RS06390 PF00881 Nitroreductase family RDF_RS06395 PF03009 Glycerophosphoryl diester phosphodiesterase family RDF_RS06400 PF08459 UvrC Helix-hairpin-helix N-terminal RDF_RS06400 PF02151 UvrB/uvrC motif RDF_RS06400 PF01541 GIY-YIG catalytic domain RDF_RS06405 PF02677 Epoxyqueuosine reductase QueH RDF_RS06410 PF01554 MatE RDF_RS06445 PF13333 Integrase core domain RDF_RS06445 PF00665 Integrase core domain RDF_RS06445 PF13276 HTH-like domain RDF_RS06455 PF01610 Transposase RDF_RS06455 PF13683 Integrase core domain RDF_RS06465 PF01297 Zinc-uptake complex component A periplasmic RDF_RS06490 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RDF_RS06490 PF07733 Bacterial DNA polymerase III alpha NTPase domain RDF_RS06490 PF02811 PHP domain RDF_RS06490 PF11490 DNA polymerase III polC-type N-terminus II RDF_RS06490 PF14579 Helix-hairpin-helix motif RDF_RS06490 PF00929 Exonuclease RDF_RS06500 PF00589 Phage integrase family RDF_RS06500 PF13495 Phage integrase, N-terminal SAM-like domain RDF_RS06555 PF16320 Ribosomal protein L7/L12 dimerisation domain RDF_RS06555 PF00542 Ribosomal protein L7/L12 C-terminal domain RDF_RS06560 PF00466 Ribosomal protein L10 RDF_RS06565 PF17871 AAA lid domain RDF_RS06565 PF10431 C-terminal, D2-small domain, of ClpB protein RDF_RS06565 PF07724 AAA domain (Cdc48 subfamily) RDF_RS06565 PF00004 ATPase family associated with various cellular activities (AAA) RDF_RS06570 PF02574 Homocysteine S-methyltransferase RDF_RS06575 PF00324 Amino acid permease RDF_RS06595 PF01926 50S ribosome-binding GTPase RDF_RS06600 PF07724 AAA domain (Cdc48 subfamily) RDF_RS06600 PF10431 C-terminal, D2-small domain, of ClpB protein RDF_RS06600 PF06689 ClpX C4-type zinc finger RDF_RS06610 PF00186 Dihydrofolate reductase RDF_RS06615 PF00303 Thymidylate synthase RDF_RS06620 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal RDF_RS06620 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal RDF_RS06625 PF00368 Hydroxymethylglutaryl-coenzyme A reductase RDF_RS06635 PF03006 Haemolysin-III related RDF_RS06640 PF00781 Diacylglycerol kinase catalytic domain RDF_RS06655 PF01070 FMN-dependent dehydrogenase RDF_RS06660 PF08544 GHMP kinases C terminal RDF_RS06660 PF00288 GHMP kinases N terminal domain RDF_RS06670 PF10509 Galactokinase galactose-binding signature RDF_RS06670 PF00288 GHMP kinases N terminal domain RDF_RS06670 PF08544 GHMP kinases C terminal RDF_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS06675 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS06680 PF00072 Response regulator receiver domain RDF_RS06680 PF00486 Transcriptional regulatory protein, C terminal RDF_RS06685 PF04607 Region found in RelA / SpoT proteins RDF_RS06690 PF00005 ABC transporter RDF_RS06690 PF00664 ABC transporter transmembrane region RDF_RS06695 PF00005 ABC transporter RDF_RS06695 PF00664 ABC transporter transmembrane region RDF_RS06705 PF17936 Bacterial Ig domain RDF_RS06705 PF02872 5'-nucleotidase, C-terminal domain RDF_RS06705 PF00149 Calcineurin-like phosphoesterase RDF_RS06710 PF01327 Polypeptide deformylase RDF_RS06715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RDF_RS06715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RDF_RS06725 PF00005 ABC transporter RDF_RS06725 PF00664 ABC transporter transmembrane region RDF_RS06730 PF00664 ABC transporter transmembrane region RDF_RS06730 PF00005 ABC transporter RDF_RS06740 PF12848 ABC transporter RDF_RS06740 PF16326 ABC transporter C-terminal domain RDF_RS06740 PF00005 ABC transporter RDF_RS06745 PF12627 Probable RNA and SrmB- binding site of polymerase A RDF_RS06745 PF13735 tRNA nucleotidyltransferase domain 2 putative RDF_RS06745 PF01743 Poly A polymerase head domain RDF_RS06750 PF02645 Uncharacterised protein, DegV family COG1307 RDF_RS06770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RDF_RS06770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RDF_RS06775 PF00294 pfkB family carbohydrate kinase RDF_RS06780 PF08220 DeoR-like helix-turn-helix domain RDF_RS06780 PF00455 DeoR C terminal sensor domain RDF_RS06785 PF01476 LysM domain RDF_RS06785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS06795 PF02558 Ketopantoate reductase PanE/ApbA RDF_RS06795 PF08546 Ketopantoate reductase PanE/ApbA C terminal RDF_RS06805 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS06810 PF01746 tRNA (Guanine-1)-methyltransferase RDF_RS06815 PF05239 PRC-barrel domain RDF_RS06815 PF01782 RimM N-terminal domain RDF_RS06840 PF00886 Ribosomal protein S16 RDF_RS06845 PF12704 MacB-like periplasmic core domain RDF_RS06845 PF02687 FtsX-like permease family RDF_RS06850 PF00005 ABC transporter RDF_RS06855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RDF_RS06860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RDF_RS06860 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RDF_RS06860 PF02142 MGS-like domain RDF_RS06865 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RDF_RS06865 PF00117 Glutamine amidotransferase class-I RDF_RS06870 PF00156 Phosphoribosyl transferase domain RDF_RS06875 PF00849 RNA pseudouridylate synthase RDF_RS06875 PF01479 S4 domain RDF_RS06880 PF01252 Signal peptidase (SPase) II RDF_RS06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RDF_RS06885 PF03466 LysR substrate binding domain RDF_RS06890 PF01016 Ribosomal L27 protein RDF_RS06900 PF00829 Ribosomal prokaryotic L21 protein RDF_RS06910 PF02926 THUMP domain RDF_RS06910 PF02568 Thiamine biosynthesis protein (ThiI) RDF_RS06915 PF00266 Aminotransferase class-V RDF_RS06925 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS06925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RDF_RS06930 PF06133 Control of competence regulator ComK, YlbF/YmcA RDF_RS06935 PF01264 Chorismate synthase RDF_RS06940 PF01761 3-dehydroquinate synthase RDF_RS06945 PF01487 Type I 3-dehydroquinase RDF_RS06950 PF10672 S-adenosylmethionine-dependent methyltransferase RDF_RS06950 PF17785 PUA-like domain RDF_RS06955 PF00884 Sulfatase RDF_RS06960 PF00453 Ribosomal protein L20 RDF_RS06965 PF01632 Ribosomal protein L35 RDF_RS06970 PF00707 Translation initiation factor IF-3, C-terminal domain RDF_RS06970 PF05198 Translation initiation factor IF-3, N-terminal domain RDF_RS06975 PF02224 Cytidylate kinase RDF_RS06995 PF07687 Peptidase dimerisation domain RDF_RS06995 PF01546 Peptidase family M20/M25/M40 RDF_RS07000 PF01943 Polysaccharide biosynthesis protein RDF_RS07000 PF14667 Polysaccharide biosynthesis C-terminal domain RDF_RS07005 PF02875 Mur ligase family, glutamate ligase domain RDF_RS07005 PF08245 Mur ligase middle domain RDF_RS07010 PF00005 ABC transporter RDF_RS07015 PF01497 Periplasmic binding protein RDF_RS07020 PF01032 FecCD transport family RDF_RS07025 PF01032 FecCD transport family RDF_RS07035 PF01368 DHH family RDF_RS07035 PF02833 DHHA2 domain RDF_RS07040 PF04055 Radical SAM superfamily RDF_RS07045 PF01595 Cyclin M transmembrane N-terminal domain RDF_RS07045 PF03471 Transporter associated domain RDF_RS07045 PF00571 CBS domain RDF_RS07050 PF06962 Putative rRNA methylase RDF_RS07055 PF04055 Radical SAM superfamily RDF_RS07055 PF16199 Radical_SAM C-terminal domain RDF_RS07060 PF01569 PAP2 superfamily RDF_RS07065 PF12822 ECF transporter, substrate-specific component RDF_RS07100 PF00534 Glycosyl transferases group 1 RDF_RS07100 PF08323 Starch synthase catalytic domain RDF_RS07105 PF00535 Glycosyl transferase family 2 RDF_RS07110 PF14667 Polysaccharide biosynthesis C-terminal domain RDF_RS07110 PF01943 Polysaccharide biosynthesis protein RDF_RS07120 PF00535 Glycosyl transferase family 2 RDF_RS07125 PF00535 Glycosyl transferase family 2 RDF_RS07135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RDF_RS07140 PF04991 LicD family RDF_RS07155 PF00535 Glycosyl transferase family 2 RDF_RS07160 PF00535 Glycosyl transferase family 2 RDF_RS07170 PF04321 RmlD substrate binding domain RDF_RS07175 PF01883 Iron-sulfur cluster assembly protein RDF_RS07180 PF04545 Sigma-70, region 4 RDF_RS07180 PF04539 Sigma-70 region 3 RDF_RS07180 PF03979 Sigma-70 factor, region 1.1 RDF_RS07180 PF04542 Sigma-70 region 2 RDF_RS07180 PF00140 Sigma-70 factor, region 1.2 RDF_RS07185 PF08275 DNA primase catalytic core, N-terminal domain RDF_RS07185 PF01807 CHC2 zinc finger RDF_RS07185 PF10410 DnaB-helicase binding domain of primase RDF_RS07190 PF01741 Large-conductance mechanosensitive channel, MscL RDF_RS07195 PF01165 Ribosomal protein S21 RDF_RS07205 PF00497 Bacterial extracellular solute-binding proteins, family 3 RDF_RS07210 PF00909 Ammonium Transporter Family RDF_RS07220 PF12368 Rhodanase C-terminal RDF_RS07220 PF00581 Rhodanese-like domain RDF_RS07220 PF17773 UPF0176 acylphosphatase like domain RDF_RS07230 PF07690 Major Facilitator Superfamily RDF_RS07235 PF00343 Carbohydrate phosphorylase RDF_RS07240 PF02446 4-alpha-glucanotransferase RDF_RS07245 PF00356 Bacterial regulatory proteins, lacI family RDF_RS07245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RDF_RS07255 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS07260 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS07265 PF00854 POT family RDF_RS07270 PF00293 NUDIX domain RDF_RS07270 PF13344 Haloacid dehalogenase-like hydrolase RDF_RS07285 PF00534 Glycosyl transferases group 1 RDF_RS07290 PF07517 SecA DEAD-like domain RDF_RS07290 PF01043 SecA preprotein cross-linking domain RDF_RS07290 PF07516 SecA Wing and Scaffold domain RDF_RS07300 PF16929 Accessory Sec system GspB-transporter RDF_RS07305 PF16993 Accessory Sec system protein Asp1 RDF_RS07310 PF00344 SecY translocase RDF_RS07315 PF01501 Glycosyl transferase family 8 RDF_RS07315 PF08759 Glycosyltransferase GT-D fold RDF_RS07320 PF00535 Glycosyl transferase family 2 RDF_RS07320 PF01501 Glycosyl transferase family 8 RDF_RS07325 PF01501 Glycosyl transferase family 8 RDF_RS07325 PF08759 Glycosyltransferase GT-D fold RDF_RS07330 PF00535 Glycosyl transferase family 2 RDF_RS07330 PF01501 Glycosyl transferase family 8 RDF_RS07335 PF08759 Glycosyltransferase GT-D fold RDF_RS07335 PF01501 Glycosyl transferase family 8 RDF_RS07360 PF17757 UvrB interaction domain RDF_RS07360 PF02151 UvrB/uvrC motif RDF_RS07360 PF00271 Helicase conserved C-terminal domain RDF_RS07360 PF12344 Ultra-violet resistance protein B RDF_RS07360 PF04851 Type III restriction enzyme, res subunit RDF_RS07370 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS07375 PF00005 ABC transporter RDF_RS07390 PF01018 GTP1/OBG RDF_RS07390 PF01926 50S ribosome-binding GTPase RDF_RS07390 PF09269 Domain of unknown function (DUF1967) RDF_RS07400 PF02073 Thermophilic metalloprotease (M29) RDF_RS07410 PF01425 Amidase RDF_RS07415 PF00849 RNA pseudouridylate synthase RDF_RS07415 PF01479 S4 domain RDF_RS07420 PF00248 Aldo/keto reductase family RDF_RS07425 PF00881 Nitroreductase family RDF_RS07430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RDF_RS07435 PF00535 Glycosyl transferase family 2 RDF_RS07440 PF00324 Amino acid permease RDF_RS07445 PF01668 SmpB protein RDF_RS07450 PF17876 Cold shock domain RDF_RS07450 PF08206 Ribonuclease B OB domain RDF_RS07450 PF00773 RNB domain RDF_RS07450 PF00575 S1 RNA binding domain RDF_RS07460 PF00083 Sugar (and other) transporter RDF_RS07460 PF07690 Major Facilitator Superfamily RDF_RS07470 PF13732 Domain of unknown function (DUF4162) RDF_RS07470 PF00005 ABC transporter RDF_RS07475 PF01121 Dephospho-CoA kinase RDF_RS07480 PF06827 Zinc finger found in FPG and IleRS RDF_RS07480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RDF_RS07480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RDF_RS07485 PF01381 Helix-turn-helix RDF_RS07515 PF01926 50S ribosome-binding GTPase RDF_RS07515 PF07650 KH domain RDF_RS07520 PF01219 Prokaryotic diacylglycerol kinase RDF_RS07525 PF02130 Uncharacterized protein family UPF0054 RDF_RS07535 PF13344 Haloacid dehalogenase-like hydrolase RDF_RS07535 PF00293 NUDIX domain RDF_RS07545 PF02562 PhoH-like protein RDF_RS07550 PF06100 MCRA family RDF_RS07555 PF06855 YozE SAM-like fold RDF_RS07560 PF01625 Peptide methionine sulfoxide reductase RDF_RS07570 PF01765 Ribosome recycling factor RDF_RS07575 PF00696 Amino acid kinase family RDF_RS07580 PF00005 ABC transporter RDF_RS07585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RDF_RS07585 PF00005 ABC transporter RDF_RS07590 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS07590 PF12911 N-terminal TM domain of oligopeptide transport permease C RDF_RS07595 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS07600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RDF_RS07605 PF00687 Ribosomal protein L1p/L10e family RDF_RS07610 PF00298 Ribosomal protein L11, RNA binding domain RDF_RS07610 PF03946 Ribosomal protein L11, N-terminal domain RDF_RS07615 PF07690 Major Facilitator Superfamily RDF_RS07620 PF07687 Peptidase dimerisation domain RDF_RS07620 PF01546 Peptidase family M20/M25/M40 RDF_RS07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RDF_RS07625 PF03466 LysR substrate binding domain RDF_RS07635 PF00425 chorismate binding enzyme RDF_RS07635 PF04715 Anthranilate synthase component I, N terminal region RDF_RS07640 PF09397 Ftsk gamma domain RDF_RS07640 PF01580 FtsK/SpoIIIE family RDF_RS07640 PF17854 FtsK alpha domain RDF_RS07645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RDF_RS07650 PF00950 ABC 3 transport family RDF_RS07655 PF00005 ABC transporter RDF_RS07660 PF01297 Zinc-uptake complex component A periplasmic RDF_RS07670 PF01048 Phosphorylase superfamily RDF_RS07680 PF00293 NUDIX domain RDF_RS07685 PF00132 Bacterial transferase hexapeptide (six repeats) RDF_RS07685 PF14602 Hexapeptide repeat of succinyl-transferase RDF_RS07685 PF12804 MobA-like NTP transferase domain RDF_RS07700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RDF_RS07700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RDF_RS07730 PF00535 Glycosyl transferase family 2 RDF_RS07755 PF05525 Branched-chain amino acid transport protein RDF_RS07760 PF09334 tRNA synthetases class I (M) RDF_RS07760 PF01588 Putative tRNA binding domain RDF_RS07765 PF03848 Tellurite resistance protein TehB RDF_RS07765 PF09313 Domain of unknown function (DUF1971) RDF_RS07775 PF02378 Phosphotransferase system, EIIC RDF_RS07785 PF03372 Endonuclease/Exonuclease/phosphatase family RDF_RS07790 PF03960 ArsC family RDF_RS07795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RDF_RS07795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RDF_RS07800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RDF_RS07800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RDF_RS07810 PF00266 Aminotransferase class-V RDF_RS07815 PF03932 CutC family RDF_RS07820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RDF_RS07825 PF06156 Initiation control protein YabA RDF_RS07830 PF09115 DNA polymerase III, delta subunit, C terminal RDF_RS07835 PF02223 Thymidylate kinase RDF_RS07840 PF00571 CBS domain RDF_RS07845 PF00005 ABC transporter RDF_RS07850 PF00005 ABC transporter RDF_RS07850 PF12399 Branched-chain amino acid ATP-binding cassette transporter RDF_RS07855 PF11862 Domain of unknown function (DUF3382) RDF_RS07855 PF02653 Branched-chain amino acid transport system / permease component RDF_RS07860 PF02653 Branched-chain amino acid transport system / permease component RDF_RS07865 PF13458 Periplasmic binding protein RDF_RS07870 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) RDF_RS07875 PF00574 Clp protease RDF_RS07885 PF00155 Aminotransferase class I and II RDF_RS07890 PF00588 SpoU rRNA Methylase family RDF_RS07895 PF13520 Amino acid permease RDF_RS07900 PF02254 TrkA-N domain RDF_RS07900 PF02080 TrkA-C domain RDF_RS07905 PF02386 Cation transport protein RDF_RS07910 PF01809 Putative membrane protein insertion efficiency factor RDF_RS07915 PF00849 RNA pseudouridylate synthase RDF_RS07915 PF01479 S4 domain RDF_RS07920 PF04079 Segregation and condensation complex subunit ScpB RDF_RS07925 PF02616 Segregation and condensation protein ScpA RDF_RS07930 PF00589 Phage integrase family RDF_RS07945 PF01725 Ham1 family RDF_RS07950 PF01177 Asp/Glu/Hydantoin racemase RDF_RS07955 PF03672 Uncharacterised protein family (UPF0154) RDF_RS07965 PF02829 3H domain RDF_RS07965 PF08279 HTH domain RDF_RS07970 PF01027 Inhibitor of apoptosis-promoting Bax1 RDF_RS07980 PF00588 SpoU rRNA Methylase family RDF_RS07980 PF08032 RNA 2'-O ribose methyltransferase substrate binding RDF_RS07985 PF00708 Acylphosphatase RDF_RS07990 PF02096 60Kd inner membrane protein RDF_RS07995 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS08000 PF00497 Bacterial extracellular solute-binding proteins, family 3 RDF_RS08005 PF01425 Amidase RDF_RS08010 PF03449 Transcription elongation factor, N-terminal RDF_RS08010 PF01272 Transcription elongation factor, GreA/GreB, C-term RDF_RS08015 PF02618 YceG-like family RDF_RS08025 PF01225 Mur ligase family, catalytic domain RDF_RS08025 PF08245 Mur ligase middle domain RDF_RS08025 PF02875 Mur ligase family, glutamate ligase domain RDF_RS08035 PF00271 Helicase conserved C-terminal domain RDF_RS08035 PF00176 SNF2 family N-terminal domain RDF_RS08035 PF04434 SWIM zinc finger RDF_RS08040 PF01926 50S ribosome-binding GTPase RDF_RS08040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RDF_RS08045 PF07319 Primosomal protein DnaI N-terminus RDF_RS08045 PF01695 IstB-like ATP binding protein RDF_RS08055 PF03477 ATP cone domain RDF_RS08060 PF18719 ArlS sensor domain RDF_RS08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS08060 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS08065 PF00072 Response regulator receiver domain RDF_RS08065 PF00486 Transcriptional regulatory protein, C terminal RDF_RS08075 PF01435 Peptidase family M48 RDF_RS08080 PF04011 LemA family RDF_RS08085 PF02527 rRNA small subunit methyltransferase G RDF_RS08090 PF02386 Cation transport protein RDF_RS08095 PF02254 TrkA-N domain RDF_RS08095 PF02080 TrkA-C domain RDF_RS08105 PF00005 ABC transporter RDF_RS08105 PF12558 ATP-binding cassette cobalt transporter RDF_RS08110 PF07155 ECF-type riboflavin transporter, S component RDF_RS08115 PF00375 Sodium:dicarboxylate symporter family RDF_RS08120 PF05525 Branched-chain amino acid transport protein RDF_RS08125 PF13823 Alcohol dehydrogenase GroES-associated RDF_RS08125 PF08240 Alcohol dehydrogenase GroES-like domain RDF_RS08125 PF00107 Zinc-binding dehydrogenase RDF_RS08130 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS08135 PF00005 ABC transporter RDF_RS08135 PF09383 NIL domain RDF_RS08140 PF07687 Peptidase dimerisation domain RDF_RS08140 PF01546 Peptidase family M20/M25/M40 RDF_RS08145 PF03180 NLPA lipoprotein RDF_RS08150 PF00497 Bacterial extracellular solute-binding proteins, family 3 RDF_RS08155 PF07722 Peptidase C26 RDF_RS08160 PF01709 Transcriptional regulator RDF_RS08165 PF02733 Dak1 domain RDF_RS08170 PF00440 Bacterial regulatory proteins, tetR family RDF_RS08170 PF14278 Transcriptional regulator C-terminal region RDF_RS08175 PF02733 Dak1 domain RDF_RS08180 PF02734 DAK2 domain RDF_RS08185 PF03610 PTS system fructose IIA component RDF_RS08190 PF00230 Major intrinsic protein RDF_RS08200 PF07739 TipAS antibiotic-recognition domain RDF_RS08200 PF13411 MerR HTH family regulatory protein RDF_RS08205 PF05636 HIGH Nucleotidyl Transferase RDF_RS08215 PF13649 Methyltransferase domain RDF_RS08230 PF01966 HD domain RDF_RS08235 PF01467 Cytidylyltransferase-like RDF_RS08240 PF01985 CRS1 / YhbY (CRM) domain RDF_RS08245 PF01926 50S ribosome-binding GTPase RDF_RS08260 PF02934 GatB/GatE catalytic domain RDF_RS08260 PF02637 GatB domain RDF_RS08265 PF01425 Amidase RDF_RS08270 PF02686 Glu-tRNAGln amidotransferase C subunit RDF_RS08275 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RDF_RS08275 PF02896 PEP-utilising enzyme, TIM barrel domain RDF_RS08275 PF00391 PEP-utilising enzyme, mobile domain RDF_RS08280 PF03618 Kinase/pyrophosphorylase RDF_RS08285 PF00571 CBS domain RDF_RS08285 PF08279 HTH domain RDF_RS08290 PF00378 Enoyl-CoA hydratase/isomerase RDF_RS08290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RDF_RS08290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RDF_RS08295 PF00857 Isochorismatase family RDF_RS08300 PF06018 CodY GAF-like domain RDF_RS08300 PF08222 CodY helix-turn-helix domain RDF_RS08305 PF00155 Aminotransferase class I and II RDF_RS08310 PF00582 Universal stress protein family RDF_RS08320 PF00710 Asparaginase, N-terminal RDF_RS08320 PF17763 Glutaminase/Asparaginase C-terminal domain RDF_RS08325 PF08501 Shikimate dehydrogenase substrate binding domain RDF_RS08325 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RDF_RS08330 PF00248 Aldo/keto reductase family RDF_RS08335 PF00271 Helicase conserved C-terminal domain RDF_RS08335 PF17191 RecG wedge domain RDF_RS08335 PF00270 DEAD/DEAH box helicase RDF_RS08340 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS08340 PF05257 CHAP domain RDF_RS08345 PF01168 Alanine racemase, N-terminal domain RDF_RS08345 PF00842 Alanine racemase, C-terminal domain RDF_RS08350 PF01648 4'-phosphopantetheinyl transferase superfamily RDF_RS08355 PF00793 DAHP synthetase I family RDF_RS08360 PF07516 SecA Wing and Scaffold domain RDF_RS08360 PF07517 SecA DEAD-like domain RDF_RS08360 PF01043 SecA preprotein cross-linking domain RDF_RS08360 PF02810 SEC-C motif RDF_RS08365 PF01238 Phosphomannose isomerase type I RDF_RS08370 PF00480 ROK family RDF_RS08375 PF00367 phosphotransferase system, EIIB RDF_RS08375 PF02378 Phosphotransferase system, EIIC RDF_RS08375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RDF_RS08380 PF08244 Glycosyl hydrolases family 32 C terminal RDF_RS08380 PF00251 Glycosyl hydrolases family 32 N-terminal domain RDF_RS08385 PF00356 Bacterial regulatory proteins, lacI family RDF_RS08390 PF01029 NusB family RDF_RS08395 PF03780 Asp23 family, cell envelope-related function RDF_RS08400 PF09285 Elongation factor P, C-terminal RDF_RS08400 PF01132 Elongation factor P (EF-P) OB domain RDF_RS08400 PF08207 Elongation factor P (EF-P) KOW-like domain RDF_RS08415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RDF_RS08420 PF01321 Creatinase/Prolidase N-terminal domain RDF_RS08420 PF00557 Metallopeptidase family M24 RDF_RS08430 PF07690 Major Facilitator Superfamily RDF_RS08435 PF00005 ABC transporter RDF_RS08435 PF17755 UvrA DNA-binding domain RDF_RS08435 PF17760 UvrA interaction domain RDF_RS08450 PF01084 Ribosomal protein S18 RDF_RS08455 PF00436 Single-strand binding protein family RDF_RS08460 PF01250 Ribosomal protein S6 RDF_RS08465 PF14815 NUDIX domain RDF_RS08465 PF00730 HhH-GPD superfamily base excision DNA repair protein RDF_RS08470 PF01381 Helix-turn-helix RDF_RS08475 PF00085 Thioredoxin RDF_RS08485 PF00488 MutS domain V RDF_RS08485 PF01713 Smr domain RDF_RS08500 PF01351 Ribonuclease HII RDF_RS08500 PF11858 Domain of unknown function (DUF3378) RDF_RS08505 PF10502 Signal peptidase, peptidase S26 RDF_RS08510 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RDF_RS08510 PF13538 UvrD-like helicase C-terminal domain RDF_RS08510 PF14490 Helix-hairpin-helix containing domain RDF_RS08520 PF11799 impB/mucB/samB family C-terminal domain RDF_RS08520 PF11798 IMS family HHH motif RDF_RS08520 PF00817 impB/mucB/samB family RDF_RS08525 PF01228 Glycine radical RDF_RS08525 PF02901 Pyruvate formate lyase-like RDF_RS08535 PF00144 Beta-lactamase RDF_RS08550 PF00230 Major intrinsic protein RDF_RS08560 PF07690 Major Facilitator Superfamily RDF_RS08565 PF13545 Crp-like helix-turn-helix domain RDF_RS08570 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RDF_RS08570 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RDF_RS08570 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal RDF_RS08580 PF00348 Polyprenyl synthetase RDF_RS08585 PF00005 ABC transporter RDF_RS08585 PF00664 ABC transporter transmembrane region RDF_RS08590 PF00664 ABC transporter transmembrane region RDF_RS08590 PF00005 ABC transporter RDF_RS08595 PF02322 Cytochrome bd terminal oxidase subunit II RDF_RS08600 PF01654 Cytochrome bd terminal oxidase subunit I RDF_RS08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS08620 PF12161 HsdM N-terminal domain RDF_RS08620 PF02384 N-6 DNA Methylase RDF_RS08630 PF02779 Transketolase, pyrimidine binding domain RDF_RS08630 PF02780 Transketolase, C-terminal domain RDF_RS08630 PF00456 Transketolase, thiamine diphosphate binding domain RDF_RS08635 PF00923 Transaldolase/Fructose-6-phosphate aldolase RDF_RS08640 PF00834 Ribulose-phosphate 3 epimerase family RDF_RS08645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RDF_RS08650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RDF_RS08655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RDF_RS08660 PF08279 HTH domain RDF_RS08660 PF05043 Mga helix-turn-helix domain RDF_RS08660 PF00874 PRD domain RDF_RS08660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RDF_RS08675 PF03466 LysR substrate binding domain RDF_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RDF_RS08680 PF00106 short chain dehydrogenase RDF_RS08690 PF00248 Aldo/keto reductase family RDF_RS08695 PF04229 GrpB protein RDF_RS08700 PF02567 Phenazine biosynthesis-like protein RDF_RS08710 PF02575 YbaB/EbfC DNA-binding family RDF_RS08720 PF07739 TipAS antibiotic-recognition domain RDF_RS08720 PF13411 MerR HTH family regulatory protein RDF_RS08730 PF04394 Protein of unknown function, DUF536 RDF_RS08730 PF08279 HTH domain RDF_RS08745 PF00253 Ribosomal protein S14p/S29e RDF_RS08755 PF00814 Glycoprotease family RDF_RS08760 PF00583 Acetyltransferase (GNAT) family RDF_RS08765 PF00814 Glycoprotease family RDF_RS08770 PF07288 Protein of unknown function (DUF1447) RDF_RS08775 PF00753 Metallo-beta-lactamase superfamily RDF_RS08775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RDF_RS08775 PF17770 Ribonuclease J C-terminal domain RDF_RS08780 PF01476 LysM domain RDF_RS08780 PF05257 CHAP domain RDF_RS08785 PF00120 Glutamine synthetase, catalytic domain RDF_RS08785 PF03951 Glutamine synthetase, beta-Grasp domain RDF_RS08790 PF13411 MerR HTH family regulatory protein RDF_RS08800 PF00162 Phosphoglycerate kinase RDF_RS08805 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RDF_RS08810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RDF_RS08810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RDF_RS08815 PF03144 Elongation factor Tu domain 2 RDF_RS08815 PF03764 Elongation factor G, domain IV RDF_RS08815 PF14492 Elongation Factor G, domain II RDF_RS08815 PF00009 Elongation factor Tu GTP binding domain RDF_RS08815 PF00679 Elongation factor G C-terminus RDF_RS08820 PF00177 Ribosomal protein S7p/S5e RDF_RS08825 PF00164 Ribosomal protein S12/S23 RDF_RS08830 PF09182 Bacterial purine repressor, N-terminal RDF_RS08830 PF00156 Phosphoribosyl transferase domain RDF_RS08835 PF01966 HD domain RDF_RS08835 PF01336 OB-fold nucleic acid binding domain RDF_RS08840 PF02646 RmuC family RDF_RS08850 PF00834 Ribulose-phosphate 3 epimerase family RDF_RS08855 PF16745 RsgA N-terminal domain RDF_RS08855 PF03193 RsgA GTPase RDF_RS08860 PF08241 Methyltransferase domain RDF_RS08865 PF00398 Ribosomal RNA adenine dimethylase RDF_RS08875 PF13331 Domain of unknown function (DUF4093) RDF_RS08880 PF01026 TatD related DNase RDF_RS08905 PF04914 DltD protein RDF_RS08910 PF00550 Phosphopantetheine attachment site RDF_RS08915 PF03062 MBOAT, membrane-bound O-acyltransferase family RDF_RS08920 PF00501 AMP-binding enzyme RDF_RS08920 PF13193 AMP-binding enzyme C-terminal domain RDF_RS08930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS08930 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS08935 PF00072 Response regulator receiver domain RDF_RS08935 PF00486 Transcriptional regulatory protein, C terminal RDF_RS08940 PF00468 Ribosomal protein L34 RDF_RS08945 PF07670 Nucleoside recognition RDF_RS08950 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS08955 PF00005 ABC transporter RDF_RS08955 PF00571 CBS domain RDF_RS08960 PF09363 XFP C-terminal domain RDF_RS08960 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RDF_RS08960 PF09364 XFP N-terminal domain RDF_RS08980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RDF_RS08980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RDF_RS08990 PF03611 PTS system sugar-specific permease component RDF_RS08995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RDF_RS08995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RDF_RS09005 PF00356 Bacterial regulatory proteins, lacI family RDF_RS09010 PF00923 Transaldolase/Fructose-6-phosphate aldolase RDF_RS09015 PF00596 Class II Aldolase and Adducin N-terminal domain RDF_RS09020 PF01261 Xylose isomerase-like TIM barrel RDF_RS09025 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RDF_RS09030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RDF_RS09035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RDF_RS09040 PF03611 PTS system sugar-specific permease component RDF_RS09055 PF00709 Adenylosuccinate synthetase RDF_RS09080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RDF_RS09080 PF18419 ATP-grasp-like domain RDF_RS09080 PF04262 Glutamate-cysteine ligase RDF_RS09095 PF01430 Hsp33 protein RDF_RS09100 PF01207 Dihydrouridine synthase (Dus) RDF_RS09105 PF01712 Deoxynucleoside kinase RDF_RS09115 PF10431 C-terminal, D2-small domain, of ClpB protein RDF_RS09115 PF17871 AAA lid domain RDF_RS09115 PF07724 AAA domain (Cdc48 subfamily) RDF_RS09115 PF00004 ATPase family associated with various cellular activities (AAA) RDF_RS09115 PF02861 Clp amino terminal domain, pathogenicity island component RDF_RS09120 PF17727 CtsR C-terminal dimerization domain RDF_RS09120 PF05848 CtsR N-terminal HTH domain RDF_RS09130 PF00889 Elongation factor TS RDF_RS09135 PF00318 Ribosomal protein S2 RDF_RS09140 PF00578 AhpC/TSA family RDF_RS09145 PF13192 Thioredoxin domain RDF_RS09145 PF07992 Pyridine nucleotide-disulphide oxidoreductase RDF_RS09155 PF00999 Sodium/hydrogen exchanger family RDF_RS09165 PF02016 LD-carboxypeptidase N-terminal domain RDF_RS09165 PF17676 LD-carboxypeptidase C-terminal domain RDF_RS09170 PF05649 Peptidase family M13 RDF_RS09170 PF01431 Peptidase family M13 RDF_RS09190 PF01327 Polypeptide deformylase RDF_RS09195 PF00356 Bacterial regulatory proteins, lacI family RDF_RS09205 PF03613 PTS system mannose/fructose/sorbose family IID component RDF_RS09210 PF03609 PTS system sorbose-specific iic component RDF_RS09215 PF03830 PTS system sorbose subfamily IIB component RDF_RS09220 PF07470 Glycosyl Hydrolase Family 88 RDF_RS09225 PF03830 PTS system sorbose subfamily IIB component RDF_RS09225 PF03610 PTS system fructose IIA component RDF_RS09260 PF14480 DNA polymerase III polC-type N-terminus I RDF_RS09260 PF02811 PHP domain RDF_RS09260 PF00929 Exonuclease RDF_RS09260 PF11490 DNA polymerase III polC-type N-terminus II RDF_RS09260 PF07733 Bacterial DNA polymerase III alpha NTPase domain RDF_RS09260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RDF_RS09260 PF14579 Helix-hairpin-helix motif RDF_RS09265 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RDF_RS09265 PF01476 LysM domain RDF_RS09270 PF04073 Aminoacyl-tRNA editing domain RDF_RS09270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RDF_RS09270 PF03129 Anticodon binding domain RDF_RS09275 PF02163 Peptidase family M50 RDF_RS09275 PF13180 PDZ domain RDF_RS09285 PF01255 Putative undecaprenyl diphosphate synthase RDF_RS09290 PF02699 Preprotein translocase subunit RDF_RS09300 PF00390 Malic enzyme, N-terminal domain RDF_RS09300 PF03949 Malic enzyme, NAD binding domain RDF_RS09305 PF03390 2-hydroxycarboxylate transporter family RDF_RS09310 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RDF_RS09310 PF17203 Single cache domain 3 RDF_RS09310 PF00989 PAS fold RDF_RS09310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS09315 PF00072 Response regulator receiver domain RDF_RS09320 PF16363 GDP-mannose 4,6 dehydratase RDF_RS09325 PF00128 Alpha amylase, catalytic domain RDF_RS09330 PF00005 ABC transporter RDF_RS09330 PF17912 MalK OB fold domain RDF_RS09330 PF03459 TOBE domain RDF_RS09335 PF13556 PucR C-terminal helix-turn-helix domain RDF_RS09340 PF01263 Aldose 1-epimerase RDF_RS09345 PF01791 DeoC/LacD family aldolase RDF_RS09350 PF00294 pfkB family carbohydrate kinase RDF_RS09355 PF02502 Ribose/Galactose Isomerase RDF_RS09360 PF02502 Ribose/Galactose Isomerase RDF_RS09365 PF04650 YSIRK type signal peptide RDF_RS09365 PF13088 BNR repeat-like domain RDF_RS09365 PF02973 Sialidase, N-terminal domain RDF_RS09385 PF00455 DeoR C terminal sensor domain RDF_RS09385 PF08220 DeoR-like helix-turn-helix domain RDF_RS09400 PF02580 D-Tyr-tRNA(Tyr) deacylase RDF_RS09405 PF02824 TGS domain RDF_RS09405 PF13291 ACT domain RDF_RS09405 PF04607 Region found in RelA / SpoT proteins RDF_RS09410 PF00149 Calcineurin-like phosphoesterase RDF_RS09410 PF02872 5'-nucleotidase, C-terminal domain RDF_RS09415 PF07972 NrdI Flavodoxin like RDF_RS09420 PF05343 M42 glutamyl aminopeptidase RDF_RS09440 PF00072 Response regulator receiver domain RDF_RS09440 PF12833 Helix-turn-helix domain RDF_RS09445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS09445 PF06580 Histidine kinase RDF_RS09450 PF03613 PTS system mannose/fructose/sorbose family IID component RDF_RS09455 PF03609 PTS system sorbose-specific iic component RDF_RS09460 PF03830 PTS system sorbose subfamily IIB component RDF_RS09470 PF00842 Alanine racemase, C-terminal domain RDF_RS09470 PF01168 Alanine racemase, N-terminal domain RDF_RS09470 PF01757 Acyltransferase family RDF_RS09480 PF00005 ABC transporter RDF_RS09480 PF13732 Domain of unknown function (DUF4162) RDF_RS09485 PF00005 ABC transporter RDF_RS09485 PF03412 Peptidase C39 family RDF_RS09485 PF00664 ABC transporter transmembrane region RDF_RS09490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS09490 PF00989 PAS fold RDF_RS09490 PF17203 Single cache domain 3 RDF_RS09490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RDF_RS09495 PF00072 Response regulator receiver domain RDF_RS09495 PF04397 LytTr DNA-binding domain RDF_RS09500 PF03372 Endonuclease/Exonuclease/phosphatase family RDF_RS09505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RDF_RS09505 PF00367 phosphotransferase system, EIIB RDF_RS09505 PF02378 Phosphotransferase system, EIIC RDF_RS09510 PF16736 Single Cache-like RDF_RS09510 PF00989 PAS fold RDF_RS09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS09510 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS09515 PF00072 Response regulator receiver domain RDF_RS09515 PF00486 Transcriptional regulatory protein, C terminal RDF_RS09520 PF01895 PhoU domain RDF_RS09525 PF00005 ABC transporter RDF_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS09535 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS09540 PF12849 PBP superfamily domain RDF_RS09550 PF04452 RNA methyltransferase RDF_RS09565 PF13411 MerR HTH family regulatory protein RDF_RS09565 PF07739 TipAS antibiotic-recognition domain RDF_RS09575 PF00293 NUDIX domain RDF_RS09600 PF00583 Acetyltransferase (GNAT) family RDF_RS09605 PF16193 AAA C-terminal domain RDF_RS09605 PF05496 Holliday junction DNA helicase RuvB P-loop domain RDF_RS09605 PF12002 MgsA AAA+ ATPase C terminal RDF_RS09655 PF06013 Proteins of 100 residues with WXG RDF_RS09685 PF04439 Streptomycin adenylyltransferase RDF_RS09715 PF00005 ABC transporter RDF_RS09725 PF01381 Helix-turn-helix RDF_RS09735 PF03819 MazG nucleotide pyrophosphohydrolase domain RDF_RS09740 PF03641 Possible lysine decarboxylase RDF_RS09750 PF00581 Rhodanese-like domain RDF_RS09755 PF07373 CAMP factor (Cfa) RDF_RS09765 PF00465 Iron-containing alcohol dehydrogenase RDF_RS09775 PF02574 Homocysteine S-methyltransferase RDF_RS09775 PF02219 Methylenetetrahydrofolate reductase RDF_RS09780 PF08267 Cobalamin-independent synthase, N-terminal domain RDF_RS09780 PF01717 Cobalamin-independent synthase, Catalytic domain RDF_RS09790 PF03591 AzlC protein RDF_RS09795 PF00082 Subtilase family RDF_RS09795 PF02225 PA domain RDF_RS09795 PF06280 Fn3-like domain RDF_RS09800 PF00486 Transcriptional regulatory protein, C terminal RDF_RS09800 PF00072 Response regulator receiver domain RDF_RS09805 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS09805 PF00672 HAMP domain RDF_RS09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS09815 PF09334 tRNA synthetases class I (M) RDF_RS09815 PF13603 Leucyl-tRNA synthetase, Domain 2 RDF_RS09815 PF08264 Anticodon-binding domain of tRNA RDF_RS09815 PF00133 tRNA synthetases class I (I, L, M and V) RDF_RS09820 PF07690 Major Facilitator Superfamily RDF_RS09825 PF01734 Patatin-like phospholipase RDF_RS09830 PF02357 Transcription termination factor nusG RDF_RS09830 PF00467 KOW motif RDF_RS09845 PF00912 Transglycosylase RDF_RS09845 PF00905 Penicillin binding protein transpeptidase domain RDF_RS09850 PF01479 S4 domain RDF_RS09850 PF00849 RNA pseudouridylate synthase RDF_RS09860 PF01676 Metalloenzyme superfamily RDF_RS09865 PF01791 DeoC/LacD family aldolase RDF_RS09870 PF01773 Na+ dependent nucleoside transporter N-terminus RDF_RS09870 PF07662 Na+ dependent nucleoside transporter C-terminus RDF_RS09870 PF07670 Nucleoside recognition RDF_RS09875 PF01048 Phosphorylase superfamily RDF_RS09890 PF00118 TCP-1/cpn60 chaperonin family RDF_RS09895 PF00166 Chaperonin 10 Kd subunit RDF_RS09900 PF00005 ABC transporter RDF_RS09905 PF02653 Branched-chain amino acid transport system / permease component RDF_RS09920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RDF_RS09925 PF03883 Peroxide stress protein YaaA RDF_RS09940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RDF_RS09950 PF13597 Anaerobic ribonucleoside-triphosphate reductase RDF_RS09950 PF03477 ATP cone domain RDF_RS09965 PF06949 Protein of unknown function (DUF1292) RDF_RS09970 PF03652 Holliday junction resolvase RDF_RS09975 PF06135 IreB regulatory phosphoprotein RDF_RS09980 PF03960 ArsC family RDF_RS09985 PF00154 recA bacterial DNA recombination protein RDF_RS09990 PF02464 Competence-damaged protein RDF_RS09990 PF00994 Probable molybdopterin binding domain RDF_RS09990 PF18146 Damage-inducible protein CinA KH domain RDF_RS09995 PF03352 Methyladenine glycosylase RDF_RS10000 PF01330 RuvA N terminal domain RDF_RS10000 PF07499 RuvA, C-terminal domain RDF_RS10010 PF08676 MutL C terminal dimerisation domain RDF_RS10010 PF01119 DNA mismatch repair protein, C-terminal domain RDF_RS10015 PF00313 'Cold-shock' DNA-binding domain RDF_RS10020 PF05192 MutS domain III RDF_RS10020 PF00488 MutS domain V RDF_RS10020 PF05190 MutS family domain IV RDF_RS10020 PF05188 MutS domain II RDF_RS10020 PF01624 MutS domain I RDF_RS10025 PF01316 Arginine repressor, DNA binding domain RDF_RS10025 PF02863 Arginine repressor, C-terminal domain RDF_RS10030 PF05746 DALR anticodon binding domain RDF_RS10030 PF00750 tRNA synthetases class I (R) RDF_RS10030 PF03485 Arginyl tRNA synthetase N terminal domain RDF_RS10040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RDF_RS10040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RDF_RS10045 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RDF_RS10045 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RDF_RS10050 PF00152 tRNA synthetases class II (D, K and N) RDF_RS10050 PF01336 OB-fold nucleic acid binding domain RDF_RS10050 PF02938 GAD domain RDF_RS10055 PF13393 Histidyl-tRNA synthetase RDF_RS10055 PF03129 Anticodon binding domain RDF_RS10060 PF01783 Ribosomal L32p protein family RDF_RS10065 PF00471 Ribosomal protein L33 RDF_RS10075 PF01022 Bacterial regulatory protein, arsR family RDF_RS10120 PF00589 Phage integrase family RDF_RS10120 PF02899 Phage integrase, N-terminal SAM-like domain RDF_RS10140 PF00486 Transcriptional regulatory protein, C terminal RDF_RS10140 PF00072 Response regulator receiver domain RDF_RS10145 PF18719 ArlS sensor domain RDF_RS10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS10145 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS10150 PF03606 C4-dicarboxylate anaerobic carrier RDF_RS10155 PF00696 Amino acid kinase family RDF_RS10160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RDF_RS10160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RDF_RS10165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RDF_RS10165 PF00989 PAS fold RDF_RS10165 PF00512 His Kinase A (phospho-acceptor) domain RDF_RS10170 PF08664 YcbB domain RDF_RS10170 PF00072 Response regulator receiver domain RDF_RS10175 PF00005 ABC transporter RDF_RS10175 PF00571 CBS domain RDF_RS10180 PF00528 Binding-protein-dependent transport system inner membrane component RDF_RS10185 PF09924 Uncharacterised conserved protein (DUF2156) RDF_RS10185 PF03706 Lysylphosphatidylglycerol synthase TM region RDF_RS10190 PF00561 alpha/beta hydrolase fold RDF_RS10195 PF06993 Protein of unknown function (DUF1304) RDF_RS10200 PF01061 ABC-2 type transporter RDF_RS10315 PF14659 Phage integrase, N-terminal SAM-like domain RDF_RS10315 PF00589 Phage integrase family RDF_RS10320 PF01479 S4 domain RDF_RS10320 PF00163 Ribosomal protein S4/S9 N-terminal domain RDF_RS10330 PF00772 DnaB-like helicase N terminal domain RDF_RS10330 PF03796 DnaB-like helicase C terminal domain RDF_RS10335 PF01281 Ribosomal protein L9, N-terminal domain RDF_RS10335 PF03948 Ribosomal protein L9, C-terminal domain RDF_RS10340 PF02272 DHHA1 domain RDF_RS10340 PF01368 DHH family RDF_RS10345 PF01134 Glucose inhibited division protein A RDF_RS10345 PF13932 GidA associated domain RDF_RS10350 PF01914 MarC family integral membrane protein RDF_RS10360 PF03315 Serine dehydratase beta chain RDF_RS10360 PF01842 ACT domain RDF_RS10365 PF03313 Serine dehydratase alpha chain RDF_RS10370 PF06737 Transglycosylase-like domain RDF_RS10375 PF01476 LysM domain RDF_RS10375 PF05257 CHAP domain RDF_RS10380 PF02361 Cobalt transport protein RDF_RS10385 PF00005 ABC transporter RDF_RS10390 PF00005 ABC transporter RDF_RS10395 PF01066 CDP-alcohol phosphatidyltransferase RDF_RS10400 PF05193 Peptidase M16 inactive domain RDF_RS10400 PF00675 Insulinase (Peptidase family M16) RDF_RS10405 PF05193 Peptidase M16 inactive domain RDF_RS10415 PF02463 RecF/RecN/SMC N terminal domain RDF_RS10420 PF06800 Sugar transport protein RDF_RS10430 PF00571 CBS domain RDF_RS10430 PF00478 IMP dehydrogenase / GMP reductase domain RDF_RS10435 PF02863 Arginine repressor, C-terminal domain RDF_RS10435 PF01316 Arginine repressor, DNA binding domain RDF_RS10440 PF00027 Cyclic nucleotide-binding domain RDF_RS10440 PF13545 Crp-like helix-turn-helix domain RDF_RS10455 PF13673 Acetyltransferase (GNAT) domain RDF_RS10460 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RDF_RS10460 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RDF_RS10465 PF13520 Amino acid permease RDF_RS10470 PF00696 Amino acid kinase family RDF_RS10475 PF00579 tRNA synthetases class I (W and Y) RDF_RS10485 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RDF_RS10485 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RDF_RS10490 PF00005 ABC transporter RDF_RS10490 PF12848 ABC transporter RDF_RS10495 PF09586 Bacterial membrane protein YfhO RDF_RS10515 PF02590 Predicted SPOUT methyltransferase RDF_RS10520 PF13180 PDZ domain RDF_RS10525 PF17762 HTH domain found in ParB protein RDF_RS10525 PF02195 ParB-like nuclease domain