locus-tag	class	description
RDF_RS00010	COG0592	DNA-directed DNA polymerase activity
RDF_RS00030	COG0012	GTP binding
RDF_RS00040	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
RDF_RS00045	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
RDF_RS00075	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
RDF_RS00260	COG0436	Aminotransferase
RDF_RS00275	COG0416	fatty acid biosynthetic process
RDF_RS00285	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
RDF_RS00290	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
RDF_RS00300	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
RDF_RS00305	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
RDF_RS00315	COG0138	bifunctional purine biosynthesis protein purh
RDF_RS00330	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
RDF_RS00340	COG1175	transmembrane transport
RDF_RS00345	COG0395	ABC-type sugar transport system, permease component
RDF_RS00360	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
RDF_RS00370	COG3458	cephalosporin-C deacetylase activity
RDF_RS00385	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
RDF_RS00400	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
RDF_RS00415	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
RDF_RS00425	COG2755	lipolytic protein G-D-S-L family
RDF_RS00425	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
RDF_RS00430	COG1454	alcohol dehydrogenase
RDF_RS00430	COG1012	belongs to the aldehyde dehydrogenase family
RDF_RS00435	COG1064	alcohol dehydrogenase
RDF_RS00445	COG0534	Mate efflux family protein
RDF_RS00555	COG0201	protein transport
RDF_RS00560	COG0563	adenylate kinase activity
RDF_RS00570	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
RDF_RS00580	COG0202	RNA polymerase activity
RDF_RS00715	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS00730	COG0443	Heat shock 70 kDa protein
RDF_RS00740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RDF_RS00750	COG0351	phosphomethylpyrimidine kinase
RDF_RS00755	COG4720	Psort location CytoplasmicMembrane, score
RDF_RS00765	COG0668	transmembrane transport
RDF_RS00795	COG0756	dUTP diphosphatase activity
RDF_RS00810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RDF_RS00820	COG1879	ABC-type sugar transport system periplasmic component
RDF_RS00825	COG1172	Belongs to the binding-protein-dependent transport system permease family
RDF_RS00840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RDF_RS00845	COG1609	Transcriptional regulator
RDF_RS00850	COG0577	efflux transmembrane transporter activity
RDF_RS00855	COG1136	(ABC) transporter
RDF_RS00860	COG0745	RESPONSE REGULATOR receiver
RDF_RS00865	COG5002	protein histidine kinase activity
RDF_RS00880	COG0191	fructose-bisphosphate aldolase activity
RDF_RS00900	COG1461	Dihydroxyacetone kinase
RDF_RS00920	COG1126	abc transporter atp-binding protein
RDF_RS00925	COG0765	amino acid transport
RDF_RS00945	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
RDF_RS00955	COG0719	Fe-S assembly protein
RDF_RS00960	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
RDF_RS00970	COG0719	Fe-S assembly protein
RDF_RS00975	COG1686	Belongs to the peptidase S11 family
RDF_RS00980	COG1686	Belongs to the peptidase S11 family
RDF_RS00985	COG4166	transmembrane transport
RDF_RS00990	COG0601	transmembrane transport
RDF_RS00995	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RDF_RS01000	COG0444	Belongs to the ABC transporter superfamily
RDF_RS01005	COG4608	Belongs to the ABC transporter superfamily
RDF_RS01045	COG1121	(ABC) transporter
RDF_RS01050	COG1108	ABC-type Mn2 Zn2 transport systems permease components
RDF_RS01065	COG4499	WXG100 protein secretion system (Wss), protein YukC
RDF_RS01065	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RDF_RS01085	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
RDF_RS01090	COG1459	type II secretion system
RDF_RS01145	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
RDF_RS01150	COG1363	Peptidase, m42
RDF_RS01165	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
RDF_RS01170	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RDF_RS01185	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RDF_RS01205	COG1346	cytolysis
RDF_RS01215	COG0601	transmembrane transport
RDF_RS01220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RDF_RS01225	COG1122	ATPase activity
RDF_RS01230	COG1124	(ABC) transporter
RDF_RS01235	COG1263	PTS System
RDF_RS01235	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS01240	COG0366	Alpha amylase catalytic
RDF_RS01245	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RDF_RS01260	COG3959	Transketolase, thiamine diphosphate binding domain
RDF_RS01265	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
RDF_RS01270	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
RDF_RS01290	COG1045	serine acetyltransferase
RDF_RS01305	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
RDF_RS01325	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
RDF_RS01335	COG4974	Belongs to the 'phage' integrase family
RDF_RS01415	COG1674	ftsk spoiiie
RDF_RS01440	COG2189	Belongs to the N(4) N(6)-methyltransferase family
RDF_RS01445	COG3421	Type III restriction
RDF_RS01490	COG1396	sequence-specific DNA binding
RDF_RS01495	COG2814	Major facilitator Superfamily
RDF_RS01505	COG1732	Glycine betaine
RDF_RS01635	COG0519	Catalyzes the synthesis of GMP from XMP
RDF_RS01680	COG1695	Transcriptional regulator
RDF_RS01695	COG1755	Isoprenylcysteine carboxyl methyltransferase
RDF_RS01735	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RDF_RS01740	COG0446	pyridine nucleotide-disulphide oxidoreductase
RDF_RS01760	COG1131	(ABC) transporter
RDF_RS01770	COG2190	(PTS) system
RDF_RS01770	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS01770	COG1263	PTS System
RDF_RS01775	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
RDF_RS01795	COG0768	penicillin binding
RDF_RS01805	COG0513	Belongs to the DEAD box helicase family
RDF_RS01820	COG1126	abc transporter atp-binding protein
RDF_RS01830	COG0492	ferredoxin-NADP+ reductase activity
RDF_RS01835	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
RDF_RS01845	COG3579	cysteine-type endopeptidase activity
RDF_RS01850	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RDF_RS01870	COG0116	Belongs to the methyltransferase superfamily
RDF_RS01880	COG1854	S-ribosylhomocysteine lyase activity
RDF_RS01885	COG1418	mRNA catabolic process
RDF_RS01885	COG4372	Transposase
RDF_RS01890	COG1131	(ABC) transporter
RDF_RS01900	COG4585	Histidine kinase
RDF_RS01905	COG2197	response regulator
RDF_RS01915	COG0194	GDP metabolic process
RDF_RS01925	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
RDF_RS01930	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
RDF_RS01935	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RDF_RS01935	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RDF_RS01945	COG2815	serine threonine protein kinase
RDF_RS01945	COG0515	serine threonine protein kinase
RDF_RS01955	COG4585	Histidine kinase
RDF_RS01960	COG2197	response regulator
RDF_RS01970	COG1098	S1 RNA binding domain
RDF_RS01975	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RDF_RS01980	COG1349	DNA-binding transcription factor activity
RDF_RS01990	COG1447	Phosphotransferase system cellobiose-specific component IIA
RDF_RS02000	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
RDF_RS02005	COG1882	Formate acetyltransferase
RDF_RS02025	COG1739	Uncharacterized protein family UPF0029
RDF_RS02030	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
RDF_RS02035	COG1040	competence protein
RDF_RS02070	COG0527	aspartate kinase activity
RDF_RS02075	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RDF_RS02080	COG1024	Enoyl-CoA hydratase
RDF_RS02090	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
RDF_RS02100	COG2070	2-Nitropropane dioxygenase
RDF_RS02105	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
RDF_RS02110	COG1028	Short-chain dehydrogenase reductase Sdr
RDF_RS02115	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
RDF_RS02130	COG0439	Biotin carboxylase
RDF_RS02150	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
RDF_RS02165	COG3716	PTS system mannose fructose sorbose family IID component
RDF_RS02170	COG3715	PTS system
RDF_RS02180	COG0561	phosphatase activity
RDF_RS02195	COG2252	PERMEase
RDF_RS02200	COG0802	atpase or kinase
RDF_RS02210	COG1316	TRANSCRIPTIONal
RDF_RS02220	COG0537	adenosine 5'-monophosphoramidase activity
RDF_RS02235	COG1131	(ABC) transporter
RDF_RS02240	COG4473	ABC transporter
RDF_RS02250	COG0220	tRNA (guanine-N7-)-methyltransferase activity
RDF_RS02265	COG0195	Participates in both transcription termination and antitermination
RDF_RS02270	COG2740	Nucleic-acid-binding protein implicated in transcription termination
RDF_RS02280	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
RDF_RS02285	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
RDF_RS02310	COG2860	membrane
RDF_RS02320	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RDF_RS02320	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RDF_RS02325	COG1832	CoA-binding protein
RDF_RS02345	COG5002	protein histidine kinase activity
RDF_RS02365	COG1268	BioY protein
RDF_RS02370	COG1234	tRNA 3'-trailer cleavage
RDF_RS02385	COG0166	Belongs to the GPI family
RDF_RS02390	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
RDF_RS02395	COG0705	Rhomboid family
RDF_RS02395	COG0457	Tetratricopeptide repeat
RDF_RS02400	COG1744	ABC transporter substrate-binding protein PnrA-like
RDF_RS02405	COG1210	Utp--glucose-1-phosphate uridylyltransferase
RDF_RS02490	COG2153	protein acetylation
RDF_RS02500	COG1216	Glycosyl transferase, family 2
RDF_RS02500	COG1442	glycosyl transferase family 8
RDF_RS02545	COG0789	Transcriptional regulator
RDF_RS02555	COG0656	L-ascorbic acid biosynthetic process
RDF_RS02630	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RDF_RS02640	COG0525	valine-tRNA ligase activity
RDF_RS02650	COG0673	inositol 2-dehydrogenase activity
RDF_RS02660	COG2315	Protein conserved in bacteria
RDF_RS02665	COG2502	aspartate--ammonia ligase
RDF_RS02675	COG0742	ribosomal rna small subunit methyltransferase
RDF_RS02685	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
RDF_RS02690	COG3480	Lon protease (S16) C-terminal proteolytic domain
RDF_RS02695	COG0737	Belongs to the 5'-nucleotidase family
RDF_RS02700	COG4470	Protein conserved in bacteria
RDF_RS02715	COG1132	(ABC) transporter
RDF_RS02720	COG1132	(ABC) transporter
RDF_RS02725	COG0512	Glutamine amidotransferase of anthranilate synthase
RDF_RS02730	COG1268	BioY protein
RDF_RS02735	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
RDF_RS02755	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
RDF_RS02770	COG1940	carbohydrate kinase activity
RDF_RS02775	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
RDF_RS02780	COG1217	gtp-binding protein TYPA
RDF_RS02815	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
RDF_RS02825	COG0762	integral membrane protein
RDF_RS02830	COG2302	S4 RNA-binding domain
RDF_RS02835	COG3599	regulation of cell shape
RDF_RS02850	COG0494	nUDIX hydrolase
RDF_RS02855	COG0542	response to heat
RDF_RS02860	COG4703	Protein of unknown function (DUF1797)
RDF_RS02865	COG0765	amino acid transport
RDF_RS02870	COG1126	abc transporter atp-binding protein
RDF_RS02875	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
RDF_RS02885	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
RDF_RS02895	COG1722	exodeoxyribonuclease VII activity
RDF_RS02905	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
RDF_RS02910	COG1438	arginine binding
RDF_RS02915	COG0497	DNA recombination
RDF_RS02920	COG1307	EDD domain protein, DegV family
RDF_RS02925	COG2755	lipolytic protein G-D-S-L family
RDF_RS02970	COG1078	dGTPase activity
RDF_RS02995	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
RDF_RS03005	COG2884	Cell division ATP-binding protein ftsE
RDF_RS03010	COG2177	Part of the ABC transporter FtsEX involved in
RDF_RS03030	COG1199	ATP-dependent helicase activity
RDF_RS03030	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
RDF_RS03035	COG0436	Aminotransferase
RDF_RS03040	COG0017	Asparaginyl-tRNA synthetase
RDF_RS03060	COG1660	Displays ATPase and GTPase activities
RDF_RS03085	COG0254	rRNA binding
RDF_RS03090	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
RDF_RS03095	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
RDF_RS03100	COG0716	FMN binding
RDF_RS03105	COG1605	Chorismate mutase
RDF_RS03105	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
RDF_RS03110	COG0038	chloride channel
RDF_RS03115	COG0335	large ribosomal subunit rRNA binding
RDF_RS03150	COG1136	(ABC) transporter
RDF_RS03165	COG5002	protein histidine kinase activity
RDF_RS03180	COG0772	Belongs to the SEDS family
RDF_RS03200	COG0560	Phosphoserine phosphatase
RDF_RS03215	COG0148	phosphopyruvate hydratase activity
RDF_RS03235	COG1316	TRANSCRIPTIONal
RDF_RS03290	COG0791	NLP P60 protein
RDF_RS03290	COG0741	lytic transglycosylase activity
RDF_RS03320	COG2946	Replication initiation factor
RDF_RS03325	COG1674	ftsk spoiiie
RDF_RS03365	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RDF_RS03365	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RDF_RS03410	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
RDF_RS03430	COG0270	DNA (cytosine-5-)-methyltransferase activity
RDF_RS03470	COG0740	serine-type endopeptidase activity
RDF_RS03535	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS03540	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
RDF_RS03565	COG3700	Belongs to the class B bacterial acid phosphatase family
RDF_RS03660	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
RDF_RS03665	COG4555	ABC transporter
RDF_RS03690	COG1028	Short-chain dehydrogenase reductase Sdr
RDF_RS03695	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
RDF_RS03700	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
RDF_RS03720	COG0404	The glycine cleavage system catalyzes the degradation of glycine
RDF_RS03725	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
RDF_RS03745	COG3064	Membrane
RDF_RS03745	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
RDF_RS03760	COG3590	peptidase
RDF_RS03765	COG3590	peptidase
RDF_RS03805	COG1136	(ABC) transporter
RDF_RS03820	COG0586	Pfam SNARE associated Golgi protein
RDF_RS03825	COG4619	ABC transporter
RDF_RS03830	COG0390	transport system, permease component
RDF_RS03840	COG0583	DNA-binding transcription factor activity
RDF_RS03850	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
RDF_RS03855	COG2211	Major facilitator Superfamily
RDF_RS03865	COG3250	beta-galactosidase activity
RDF_RS03870	COG2186	Transcriptional regulator
RDF_RS03875	COG0800	Aldolase
RDF_RS03880	COG1904	glucuronate isomerase
RDF_RS03885	COG1312	Catalyzes the dehydration of D-mannonate
RDF_RS03890	COG1028	Short-chain dehydrogenase reductase Sdr
RDF_RS03910	COG1609	Transcriptional regulator
RDF_RS03925	COG0438	transferase activity, transferring glycosyl groups
RDF_RS03930	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
RDF_RS03950	COG0765	amino acid transport
RDF_RS03955	COG0765	amino acid transport
RDF_RS03960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RDF_RS03965	COG1126	abc transporter atp-binding protein
RDF_RS03970	COG0745	RESPONSE REGULATOR receiver
RDF_RS03975	COG5002	protein histidine kinase activity
RDF_RS03980	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
RDF_RS03985	COG2832	Protein of unknown function (DUF454)
RDF_RS03995	COG1196	nuclear chromosome segregation
RDF_RS04000	COG0561	phosphatase activity
RDF_RS04005	COG0561	phosphatase activity
RDF_RS04010	COG0552	protein localization to endoplasmic reticulum
RDF_RS04015	COG3689	TIGRFAM TIGR03943 family protein
RDF_RS04020	COG0701	Predicted permease
RDF_RS04035	COG2183	response to ionizing radiation
RDF_RS04040	COG3091	SprT-like family
RDF_RS04045	COG1983	PspC domain protein
RDF_RS04080	COG0826	peptidase U32
RDF_RS04085	COG4443	Transcriptional Coactivator p15 (PC4)
RDF_RS04095	COG1914	H( )-stimulated, divalent metal cation uptake system
RDF_RS04110	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
RDF_RS04110	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
RDF_RS04135	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
RDF_RS04160	COG1164	Oligoendopeptidase f
RDF_RS04170	COG0772	Belongs to the SEDS family
RDF_RS04190	COG0768	penicillin binding
RDF_RS04205	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
RDF_RS04210	COG2223	nitrite transmembrane transporter activity
RDF_RS04235	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
RDF_RS04240	COG2011	ABC-type metal ion transport system permease component
RDF_RS04245	COG1464	Belongs to the NlpA lipoprotein family
RDF_RS04250	COG0513	Belongs to the DEAD box helicase family
RDF_RS04260	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
RDF_RS04265	COG0204	Acyl-transferase
RDF_RS04270	COG1596	polysaccharide export
RDF_RS04270	COG1555	photosystem II stabilization
RDF_RS04275	COG0658	competence protein
RDF_RS04275	COG2333	competence protein COMEC
RDF_RS04280	COG0561	phosphatase activity
RDF_RS04285	COG1609	Transcriptional regulator
RDF_RS04290	COG0657	acetylesterase activity
RDF_RS04295	COG2226	methyltransferase
RDF_RS04305	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
RDF_RS04310	COG3711	transcriptional antiterminator
RDF_RS04315	COG1263	PTS System
RDF_RS04315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS04315	COG2190	(PTS) system
RDF_RS04325	COG3835	regulator
RDF_RS04330	COG1929	Belongs to the glycerate kinase type-1 family
RDF_RS04335	COG2610	gluconate transmembrane transporter activity
RDF_RS04345	COG1846	Transcriptional regulator
RDF_RS04360	COG0363	glucosamine-6-phosphate deaminase activity
RDF_RS04365	COG0435	Glutathione S-transferase
RDF_RS04370	COG1187	pseudouridine synthase activity
RDF_RS04390	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
RDF_RS04395	COG4122	O-methyltransferase activity
RDF_RS04405	COG4894	glucomannan catabolic process
RDF_RS04420	COG1442	glycosyl transferase family 8
RDF_RS04435	COG1476	TRANSCRIPTIONal
RDF_RS04450	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RDF_RS04455	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RDF_RS04460	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
RDF_RS04475	COG1012	belongs to the aldehyde dehydrogenase family
RDF_RS04480	COG0726	polysaccharide deacetylase
RDF_RS04495	COG1956	GAF domain-containing protein
RDF_RS04500	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
RDF_RS04510	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
RDF_RS04510	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
RDF_RS04540	COG4721	ABC-type cobalt transport system, permease component
RDF_RS04545	COG1122	ATPase activity
RDF_RS04555	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
RDF_RS04585	COG4109	DRTGG domain
RDF_RS04590	COG0024	Methionine aminopeptidase
RDF_RS04600	COG2246	polysaccharide biosynthetic process
RDF_RS04605	COG4708	membrane
RDF_RS04615	COG1597	lipid kinase activity
RDF_RS04620	COG1523	belongs to the glycosyl hydrolase 13 family
RDF_RS04635	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
RDF_RS04715	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RDF_RS04715	COG0072	phenylalanine-tRNA ligase activity
RDF_RS04720	COG2321	neutral zinc metallopeptidase
RDF_RS04745	COG0488	(ABC) transporter
RDF_RS04750	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
RDF_RS04755	COG0022	dehydrogenase e1 component
RDF_RS04755	COG0508	dehydrogenase complex catalyzes the overall conversion of
RDF_RS04760	COG0508	dehydrogenase complex catalyzes the overall conversion of
RDF_RS04770	COG0095	Lipoate-protein ligase
RDF_RS04775	COG3442	glutamine amidotransferase
RDF_RS04780	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
RDF_RS04785	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
RDF_RS04810	COG0635	Involved in the biosynthesis of porphyrin-containing compound
RDF_RS04820	COG0647	UMP catabolic process
RDF_RS04830	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
RDF_RS04835	COG1518	maintenance of DNA repeat elements
RDF_RS04840	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
RDF_RS04860	COG0481	GTPase activity
RDF_RS04870	COG1418	mRNA catabolic process
RDF_RS04875	COG0456	acetyltransferase
RDF_RS04910	COG1131	(ABC) transporter
RDF_RS04915	COG1725	Transcriptional regulator
RDF_RS04925	COG0205	6-phosphofructokinase activity
RDF_RS04930	COG0469	pyruvate kinase activity
RDF_RS04940	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
RDF_RS04945	COG2824	Alkylphosphonate utilization operon protein PhnA
RDF_RS04950	COG0765	amino acid transport
RDF_RS04955	COG1126	abc transporter atp-binding protein
RDF_RS04970	COG1072	(Pantothenic acid kinase))
RDF_RS04975	COG2813	Specifically methylates the guanine in position
RDF_RS04985	COG1744	ABC transporter substrate-binding protein PnrA-like
RDF_RS04990	COG3845	ABC transporter
RDF_RS04995	COG4603	Belongs to the binding-protein-dependent transport system permease family
RDF_RS05000	COG1079	Belongs to the binding-protein-dependent transport system permease family
RDF_RS05020	COG3764	Sortase (surface protein transpeptidase)
RDF_RS05025	COG0346	lactoylglutathione lyase activity
RDF_RS05105	COG2188	Transcriptional regulator
RDF_RS05120	COG1464	Belongs to the NlpA lipoprotein family
RDF_RS05135	COG1136	(ABC) transporter
RDF_RS05145	COG0745	RESPONSE REGULATOR receiver
RDF_RS05150	COG5002	protein histidine kinase activity
RDF_RS05155	COG4974	Belongs to the 'phage' integrase family
RDF_RS05160	COG4166	transmembrane transport
RDF_RS05175	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
RDF_RS05180	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
RDF_RS05185	COG5002	protein histidine kinase activity
RDF_RS05190	COG0745	RESPONSE REGULATOR receiver
RDF_RS05200	COG0704	Plays a role in the regulation of phosphate uptake
RDF_RS05205	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
RDF_RS05210	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
RDF_RS05215	COG0581	inorganic phosphate transmembrane transporter activity
RDF_RS05220	COG0573	inorganic phosphate transmembrane transporter activity
RDF_RS05230	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
RDF_RS05230	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RDF_RS05235	COG0483	inositol monophosphate 1-phosphatase activity
RDF_RS05250	COG0196	riboflavin kinase activity
RDF_RS05255	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
RDF_RS05285	COG1136	(ABC) transporter
RDF_RS05290	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
RDF_RS05295	COG0758	DNA mediated transformation
RDF_RS05300	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
RDF_RS05305	COG4604	ABC transporter, ATP-binding protein
RDF_RS05310	COG4605	iron ion homeostasis
RDF_RS05315	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RDF_RS05320	COG0110	maltose O-acetyltransferase activity
RDF_RS05330	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
RDF_RS05335	COG1376	ErfK ybiS ycfS ynhG family protein
RDF_RS05340	COG1966	Carbon starvation protein
RDF_RS05345	COG3279	Response regulator of the LytR AlgR family
RDF_RS05350	COG3275	phosphorelay sensor kinase activity
RDF_RS05375	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS05375	COG3942	CHAP domain
RDF_RS05495	COG0505	Belongs to the CarA family
RDF_RS05525	COG0488	(ABC) transporter
RDF_RS05535	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
RDF_RS05545	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
RDF_RS05550	COG2759	Belongs to the formate--tetrahydrofolate ligase family
RDF_RS05585	COG0095	Lipoate-protein ligase
RDF_RS05595	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
RDF_RS05600	COG4684	Psort location CytoplasmicMembrane, score
RDF_RS05605	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
RDF_RS05615	COG1132	(ABC) transporter
RDF_RS05635	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
RDF_RS05645	COG2890	protein-(glutamine-N5) methyltransferase activity
RDF_RS05650	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
RDF_RS05660	COG1942	4-Oxalocrotonate Tautomerase
RDF_RS05675	COG3976	FMN-binding domain protein
RDF_RS05675	COG0431	NADPH-dependent FMN reductase
RDF_RS05675	COG1053	succinate dehydrogenase
RDF_RS05685	COG2233	PERMEase
RDF_RS05695	COG0516	GMP reductase activity
RDF_RS05700	COG0477	Major facilitator Superfamily
RDF_RS05715	COG4221	oxidoreductase activity
RDF_RS05720	COG0280	phosphate acetyltransferase
RDF_RS05725	COG0564	pseudouridine synthase activity
RDF_RS05730	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
RDF_RS05735	COG2357	RelA SpoT domain protein
RDF_RS05750	COG1104	cysteine desulfurase activity
RDF_RS05760	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
RDF_RS05765	COG2003	Belongs to the UPF0758 family
RDF_RS05770	COG0628	permease
RDF_RS05775	COG2723	6-phospho-beta-galactosidase activity
RDF_RS05785	COG0561	phosphatase activity
RDF_RS05795	COG0038	chloride channel
RDF_RS05805	COG1177	transmembrane transport
RDF_RS05810	COG1176	ABC-type spermidine putrescine transport system, permease component I
RDF_RS05820	COG0812	UDP-N-acetylmuramate dehydrogenase activity
RDF_RS05825	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
RDF_RS05845	COG0285	dihydrofolate synthase activity
RDF_RS05850	COG2962	Rard protein
RDF_RS05865	COG0726	polysaccharide deacetylase
RDF_RS05870	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
RDF_RS05875	COG1012	belongs to the aldehyde dehydrogenase family
RDF_RS05950	COG2261	transglycosylase associated protein
RDF_RS05975	COG1115	amino acid carrier protein
RDF_RS05980	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
RDF_RS05990	COG1346	cytolysis
RDF_RS06020	COG4974	Belongs to the 'phage' integrase family
RDF_RS06030	COG0539	negative regulation of cytoplasmic translation
RDF_RS06050	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
RDF_RS06060	COG0187	DNA topoisomerase II activity
RDF_RS06065	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
RDF_RS06070	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
RDF_RS06080	COG2755	lipolytic protein G-D-S-L family
RDF_RS06080	COG1083	cytidylyl-transferase
RDF_RS06095	COG2089	acid synthase
RDF_RS06110	COG1442	glycosyl transferase family 8
RDF_RS06110	COG1216	Glycosyl transferase, family 2
RDF_RS06115	COG1215	transferase activity, transferring glycosyl groups
RDF_RS06120	COG0463	Glycosyl transferase, family 2
RDF_RS06140	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
RDF_RS06165	COG1316	TRANSCRIPTIONal
RDF_RS06190	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
RDF_RS06225	COG3842	ATPase activity
RDF_RS06240	COG1293	RNA-binding protein homologous to eukaryotic snRNP
RDF_RS06245	COG3527	Alpha-acetolactate decarboxylase
RDF_RS06250	COG0028	Belongs to the TPP enzyme family
RDF_RS06255	COG0457	Tetratricopeptide repeat
RDF_RS06260	COG0628	permease
RDF_RS06270	COG1051	belongs to the nudix hydrolase family
RDF_RS06275	COG5492	domain, Protein
RDF_RS06280	COG1088	dTDP-glucose 4,6-dehydratase activity
RDF_RS06290	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
RDF_RS06295	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RDF_RS06305	COG2384	SAM-dependent methyltransferase
RDF_RS06320	COG1621	beta-fructofuranosidase activity
RDF_RS06325	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
RDF_RS06325	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
RDF_RS06330	COG0300	oxidoreductase activity
RDF_RS06345	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
RDF_RS06380	COG1573	uracil-dna glycosylase
RDF_RS06385	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
RDF_RS06395	COG0584	glycerophosphoryl diester phosphodiesterase
RDF_RS06410	COG0534	Mate efflux family protein
RDF_RS06445	COG2801	Transposase and inactivated derivatives
RDF_RS06465	COG0803	Belongs to the bacterial solute-binding protein 9 family
RDF_RS06490	COG2176	DNA-directed DNA polymerase activity
RDF_RS06500	COG4974	Belongs to the 'phage' integrase family
RDF_RS06530	COG1674	ftsk spoiiie
RDF_RS06570	COG2040	homocysteine
RDF_RS06575	COG0833	amino acid
RDF_RS06610	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
RDF_RS06620	COG3425	synthase
RDF_RS06635	COG1272	protein, Hemolysin III
RDF_RS06680	COG0745	RESPONSE REGULATOR receiver
RDF_RS06685	COG2357	RelA SpoT domain protein
RDF_RS06690	COG1132	(ABC) transporter
RDF_RS06705	COG0737	Belongs to the 5'-nucleotidase family
RDF_RS06710	COG0242	peptide deformylase activity
RDF_RS06715	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
RDF_RS06725	COG1132	(ABC) transporter
RDF_RS06740	COG0488	(ABC) transporter
RDF_RS06770	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RDF_RS06770	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RDF_RS06770	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RDF_RS06775	COG1105	Belongs to the carbohydrate kinase PfkB family
RDF_RS06780	COG1349	DNA-binding transcription factor activity
RDF_RS06785	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS06785	COG1388	LysM domain
RDF_RS06835	COG1837	Belongs to the UPF0109 family
RDF_RS06840	COG0228	four-way junction DNA binding
RDF_RS06845	COG0577	efflux transmembrane transporter activity
RDF_RS06850	COG1136	(ABC) transporter
RDF_RS06855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RDF_RS06865	COG0505	Belongs to the CarA family
RDF_RS06875	COG0564	pseudouridine synthase activity
RDF_RS06885	COG0583	DNA-binding transcription factor activity
RDF_RS06890	COG0211	Belongs to the bacterial ribosomal protein bL27 family
RDF_RS06910	COG0301	tRNA thio-modification
RDF_RS06915	COG1104	cysteine desulfurase activity
RDF_RS06925	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RDF_RS06950	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
RDF_RS06955	COG1368	sulfuric ester hydrolase activity
RDF_RS06960	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
RDF_RS06970	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
RDF_RS07000	COG2244	polysaccharide biosynthetic process
RDF_RS07010	COG1120	ATPase activity
RDF_RS07015	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
RDF_RS07020	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RDF_RS07025	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RDF_RS07040	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RDF_RS07045	COG1253	flavin adenine dinucleotide binding
RDF_RS07050	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
RDF_RS07055	COG1242	4 iron, 4 sulfur cluster binding
RDF_RS07060	COG0671	phosphoesterase, PA-phosphatase related
RDF_RS07065	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
RDF_RS07100	COG0297	glycogen (starch) synthase activity
RDF_RS07140	COG3475	LICD family
RDF_RS07155	COG0463	Glycosyl transferase, family 2
RDF_RS07160	COG1215	transferase activity, transferring glycosyl groups
RDF_RS07170	COG1091	dTDP-4-dehydrorhamnose reductase activity
RDF_RS07175	COG2151	metal-sulfur cluster biosynthetic enzyme
RDF_RS07180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
RDF_RS07185	COG0358	DNA primase activity
RDF_RS07190	COG1970	mechanosensitive ion channel activity
RDF_RS07205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RDF_RS07210	COG0004	ammonium transporteR
RDF_RS07220	COG1054	Belongs to the UPF0176 family
RDF_RS07230	COG2271	Major facilitator Superfamily
RDF_RS07235	COG0058	SHG alpha-glucan phosphorylase activity
RDF_RS07240	COG1640	4-alpha-glucanotransferase
RDF_RS07245	COG1609	Transcriptional regulator
RDF_RS07255	COG1175	transmembrane transport
RDF_RS07260	COG3833	ABC-type maltose transport systems, permease component
RDF_RS07265	COG3104	oligopeptide transport
RDF_RS07285	COG0438	transferase activity, transferring glycosyl groups
RDF_RS07315	COG1442	glycosyl transferase family 8
RDF_RS07320	COG1216	Glycosyl transferase, family 2
RDF_RS07320	COG1442	glycosyl transferase family 8
RDF_RS07325	COG1442	glycosyl transferase family 8
RDF_RS07330	COG1216	Glycosyl transferase, family 2
RDF_RS07330	COG1442	glycosyl transferase family 8
RDF_RS07335	COG1442	glycosyl transferase family 8
RDF_RS07370	COG0765	amino acid transport
RDF_RS07375	COG1126	abc transporter atp-binding protein
RDF_RS07400	COG2309	aminopeptidase activity
RDF_RS07415	COG1187	pseudouridine synthase activity
RDF_RS07420	COG0656	L-ascorbic acid biosynthetic process
RDF_RS07425	COG0778	Nitroreductase
RDF_RS07430	COG0346	lactoylglutathione lyase activity
RDF_RS07435	COG0463	Glycosyl transferase, family 2
RDF_RS07440	COG1113	amino acid transport
RDF_RS07445	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
RDF_RS07450	COG0557	exoribonuclease II activity
RDF_RS07460	COG2814	Major facilitator Superfamily
RDF_RS07470	COG1131	(ABC) transporter
RDF_RS07480	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
RDF_RS07485	COG1396	sequence-specific DNA binding
RDF_RS07520	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
RDF_RS07525	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
RDF_RS07545	COG1702	phosphate starvation-inducible protein PhoH
RDF_RS07570	COG0233	cytoplasmic translational termination
RDF_RS07585	COG0444	Belongs to the ABC transporter superfamily
RDF_RS07590	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RDF_RS07595	COG0601	transmembrane transport
RDF_RS07600	COG0747	negative chemotaxis
RDF_RS07605	COG0081	regulation of translation
RDF_RS07610	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
RDF_RS07620	COG1473	amidohydrolase
RDF_RS07625	COG0583	DNA-binding transcription factor activity
RDF_RS07635	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
RDF_RS07640	COG1674	ftsk spoiiie
RDF_RS07645	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
RDF_RS07670	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
RDF_RS07700	COG0673	inositol 2-dehydrogenase activity
RDF_RS07710	COG1028	Short-chain dehydrogenase reductase Sdr
RDF_RS07755	COG1114	Component of the transport system for branched-chain amino acids
RDF_RS07760	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RDF_RS07760	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RDF_RS07775	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
RDF_RS07785	COG0708	Exodeoxyribonuclease III
RDF_RS07790	COG1393	Belongs to the ArsC family
RDF_RS07795	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
RDF_RS07800	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
RDF_RS07810	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
RDF_RS07830	COG0470	DNA polymerase III
RDF_RS07840	COG0517	IMP dehydrogenase activity
RDF_RS07880	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
RDF_RS07885	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
RDF_RS07895	COG0531	amino acid
RDF_RS07900	COG0569	domain protein
RDF_RS07905	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RDF_RS07915	COG1187	pseudouridine synthase activity
RDF_RS07950	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
RDF_RS07965	COG1827	regulation of RNA biosynthetic process
RDF_RS07980	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
RDF_RS07985	COG1254	Belongs to the acylphosphatase family
RDF_RS07995	COG0765	amino acid transport
RDF_RS08000	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RDF_RS08015	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
RDF_RS08045	COG1484	DNA-dependent DNA replication
RDF_RS08060	COG5002	protein histidine kinase activity
RDF_RS08065	COG0745	RESPONSE REGULATOR receiver
RDF_RS08080	COG1704	LemA family
RDF_RS08085	COG0357	Ribosomal RNA small subunit methyltransferase G
RDF_RS08090	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RDF_RS08095	COG0569	domain protein
RDF_RS08120	COG1114	Component of the transport system for branched-chain amino acids
RDF_RS08125	COG1063	alcohol dehydrogenase
RDF_RS08150	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RDF_RS08155	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
RDF_RS08160	COG0217	transcriptional regulatory protein
RDF_RS08165	COG2376	Dihydroxyacetone kinase
RDF_RS08170	COG1309	transcriptional regulator
RDF_RS08175	COG2376	Dihydroxyacetone kinase
RDF_RS08180	COG1461	Dihydroxyacetone kinase
RDF_RS08185	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
RDF_RS08190	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RDF_RS08200	COG0789	Transcriptional regulator
RDF_RS08215	COG2226	methyltransferase
RDF_RS08220	COG0799	negative regulation of ribosome biogenesis
RDF_RS08230	COG1713	HD superfamily hydrolase involved in NAD metabolism
RDF_RS08235	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
RDF_RS08240	COG1534	Rna-binding protein
RDF_RS08245	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
RDF_RS08250	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
RDF_RS08275	COG0574	Belongs to the PEP-utilizing enzyme family
RDF_RS08275	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
RDF_RS08285	COG0517	IMP dehydrogenase activity
RDF_RS08295	COG1335	isochorismatase
RDF_RS08300	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
RDF_RS08305	COG0436	Aminotransferase
RDF_RS08310	COG0589	response to stress
RDF_RS08315	COG0561	phosphatase activity
RDF_RS08320	COG0252	asparaginase activity
RDF_RS08330	COG4989	oxidoreductase activity
RDF_RS08335	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
RDF_RS08340	COG3942	CHAP domain
RDF_RS08340	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS08350	COG0736	holo-[acyl-carrier-protein] synthase activity
RDF_RS08355	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
RDF_RS08365	COG1482	cell wall glycoprotein biosynthetic process
RDF_RS08370	COG1940	carbohydrate kinase activity
RDF_RS08375	COG2190	(PTS) system
RDF_RS08375	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS08375	COG1263	PTS System
RDF_RS08380	COG1621	beta-fructofuranosidase activity
RDF_RS08385	COG1609	Transcriptional regulator
RDF_RS08390	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RDF_RS08400	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
RDF_RS08415	COG2131	deaminase
RDF_RS08420	COG0006	proline dipeptidase activity
RDF_RS08430	COG2814	Major facilitator Superfamily
RDF_RS08455	COG0629	single-stranded DNA binding
RDF_RS08460	COG0360	Binds together with S18 to 16S ribosomal RNA
RDF_RS08465	COG1194	a g-specific adenine glycosylase
RDF_RS08475	COG3118	belongs to the thioredoxin family
RDF_RS08500	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
RDF_RS08505	COG0681	Belongs to the peptidase S26 family
RDF_RS08510	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
RDF_RS08525	COG1882	Formate acetyltransferase
RDF_RS08535	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
RDF_RS08550	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RDF_RS08560	COG2814	Major facilitator Superfamily
RDF_RS08565	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
RDF_RS08580	COG0142	geranyltranstransferase activity
RDF_RS08585	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
RDF_RS08590	COG4988	ABC transporter
RDF_RS08595	COG1294	oxidase, subunit
RDF_RS08600	COG1271	oxidase subunit
RDF_RS08605	COG1252	NADH dehydrogenase
RDF_RS08640	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
RDF_RS08645	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RDF_RS08645	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
RDF_RS08645	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RDF_RS08650	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RDF_RS08655	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RDF_RS08660	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RDF_RS08660	COG3711	transcriptional antiterminator
RDF_RS08680	COG4221	oxidoreductase activity
RDF_RS08690	COG0656	L-ascorbic acid biosynthetic process
RDF_RS08695	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
RDF_RS08710	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
RDF_RS08715	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
RDF_RS08720	COG0789	Transcriptional regulator
RDF_RS08735	COG2081	HI0933 family
RDF_RS08760	COG0456	acetyltransferase
RDF_RS08765	COG1214	PFAM Peptidase M22, glycoprotease
RDF_RS08780	COG3942	CHAP domain
RDF_RS08785	COG0174	glutamine synthetase
RDF_RS08790	COG0789	Transcriptional regulator
RDF_RS08805	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
RDF_RS08830	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
RDF_RS08855	COG1162	GTPase activity
RDF_RS08880	COG0084	hydrolase, TatD family'
RDF_RS08905	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
RDF_RS08910	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
RDF_RS08915	COG1696	Membrane protein involved in D-alanine export
RDF_RS08935	COG0745	RESPONSE REGULATOR receiver
RDF_RS08945	COG3314	Sporulation integral membrane protein YlbJ
RDF_RS08955	COG4175	Glycine betaine
RDF_RS08955	COG3448	diguanylate cyclase activity
RDF_RS08960	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
RDF_RS08980	COG1070	Carbohydrate kinase
RDF_RS08990	COG3775	system Galactitol-specific IIC component
RDF_RS08995	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
RDF_RS09005	COG1609	Transcriptional regulator
RDF_RS09100	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
RDF_RS09105	COG1428	Deoxynucleoside kinase
RDF_RS09115	COG0542	response to heat
RDF_RS09120	COG4463	regulation of RNA biosynthetic process
RDF_RS09130	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
RDF_RS09140	COG0450	alkyl hydroperoxide reductase
RDF_RS09155	COG0025	NhaP-type Na H and K H
RDF_RS09165	COG1619	proteins homologs of microcin C7 resistance protein MccF
RDF_RS09170	COG3590	peptidase
RDF_RS09195	COG1609	Transcriptional regulator
RDF_RS09205	COG3716	PTS system mannose fructose sorbose family IID component
RDF_RS09210	COG3715	PTS system
RDF_RS09215	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS09220	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
RDF_RS09230	COG1028	Short-chain dehydrogenase reductase Sdr
RDF_RS09260	COG2176	DNA-directed DNA polymerase activity
RDF_RS09265	COG1388	LysM domain
RDF_RS09265	COG1705	Flagellar rod assembly protein muramidase FlgJ
RDF_RS09280	COG4589	Belongs to the CDS family
RDF_RS09285	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
RDF_RS09290	COG1862	Preprotein translocase
RDF_RS09305	COG3493	citrate carrier protein
RDF_RS09310	COG3290	protein histidine kinase activity
RDF_RS09315	COG4565	transcriptional regulatory protein
RDF_RS09320	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
RDF_RS09330	COG3842	ATPase activity
RDF_RS09400	COG1490	D-aminoacyl-tRNA deacylase activity
RDF_RS09410	COG0737	Belongs to the 5'-nucleotidase family
RDF_RS09420	COG1363	Peptidase, m42
RDF_RS09440	COG2207	Transcriptional regulator
RDF_RS09440	COG4753	response regulator
RDF_RS09445	COG2972	Histidine kinase
RDF_RS09450	COG3716	PTS system mannose fructose sorbose family IID component
RDF_RS09455	COG3715	PTS system
RDF_RS09480	COG1131	(ABC) transporter
RDF_RS09485	COG2274	protein secretion by the type I secretion system
RDF_RS09490	COG3290	protein histidine kinase activity
RDF_RS09495	COG3279	Response regulator of the LytR AlgR family
RDF_RS09505	COG1263	PTS System
RDF_RS09505	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RDF_RS09505	COG2190	(PTS) system
RDF_RS09510	COG5002	protein histidine kinase activity
RDF_RS09515	COG0745	RESPONSE REGULATOR receiver
RDF_RS09525	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
RDF_RS09530	COG0581	inorganic phosphate transmembrane transporter activity
RDF_RS09535	COG0573	inorganic phosphate transmembrane transporter activity
RDF_RS09550	COG1385	rRNA (uridine-N3-)-methyltransferase activity
RDF_RS09565	COG0789	Transcriptional regulator
RDF_RS09600	COG0456	acetyltransferase
RDF_RS09605	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
RDF_RS09715	COG1131	(ABC) transporter
RDF_RS09725	COG1396	sequence-specific DNA binding
RDF_RS09735	COG1694	Mazg nucleotide pyrophosphohydrolase
RDF_RS09750	COG2897	thiosulfate sulfurtransferase activity
RDF_RS09765	COG0371	Dehydrogenase
RDF_RS09775	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
RDF_RS09775	COG0646	methionine synthase
RDF_RS09790	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
RDF_RS09800	COG0745	RESPONSE REGULATOR receiver
RDF_RS09805	COG2770	Histidine kinase
RDF_RS09805	COG2205	protein histidine kinase activity
RDF_RS09820	COG2814	Major facilitator Superfamily
RDF_RS09825	COG4667	esterase of the alpha-beta hydrolase superfamily
RDF_RS09845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RDF_RS09850	COG0564	pseudouridine synthase activity
RDF_RS09870	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RDF_RS09875	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
RDF_RS09895	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
RDF_RS09900	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
RDF_RS09900	COG1116	anion transmembrane transporter activity
RDF_RS09905	COG4120	Belongs to the binding-protein-dependent transport system permease family
RDF_RS09915	COG0561	phosphatase activity
RDF_RS09920	COG2514	catechol 2,3-dioxygenase activity
RDF_RS09930	COG0602	queuosine metabolic process
RDF_RS09950	COG1328	CTP reductase activity
RDF_RS09970	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
RDF_RS09980	COG1393	Belongs to the ArsC family
RDF_RS09985	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
RDF_RS09995	COG2818	Glycosylase
RDF_RS10040	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
RDF_RS10045	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
RDF_RS10065	COG0267	Belongs to the bacterial ribosomal protein bL33 family
RDF_RS10120	COG4974	Belongs to the 'phage' integrase family
RDF_RS10140	COG0745	RESPONSE REGULATOR receiver
RDF_RS10145	COG5002	protein histidine kinase activity
RDF_RS10150	COG1288	antiporter activity
RDF_RS10160	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
RDF_RS10165	COG3852	Histidine kinase
RDF_RS10170	COG0784	Response regulator, receiver
RDF_RS10175	COG0517	IMP dehydrogenase activity
RDF_RS10175	COG1125	glycine betaine transport
RDF_RS10180	COG1174	glycine betaine transport
RDF_RS10185	COG0392	lysyltransferase activity
RDF_RS10185	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
RDF_RS10195	COG3759	membrane
RDF_RS10315	COG0582	viral genome integration into host DNA
RDF_RS10330	COG0305	Participates in initiation and elongation during chromosome replication
RDF_RS10350	COG2095	MarC family integral membrane protein
RDF_RS10355	COG0482	sulfurtransferase activity
RDF_RS10360	COG1760	l-serine dehydratase
RDF_RS10365	COG1760	l-serine dehydratase
RDF_RS10370	COG0741	lytic transglycosylase activity
RDF_RS10395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
RDF_RS10400	COG0612	Peptidase, M16
RDF_RS10405	COG0612	Peptidase, M16
RDF_RS10410	COG2501	S4 domain
RDF_RS10430	COG0517	IMP dehydrogenase activity
RDF_RS10430	COG0516	GMP reductase activity
RDF_RS10440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
RDF_RS10455	COG0454	-acetyltransferase
RDF_RS10470	COG0549	Belongs to the carbamate kinase family
RDF_RS10485	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
RDF_RS10490	COG0488	(ABC) transporter
RDF_RS10495	COG4485	Bacterial membrane protein, YfhO
RDF_RS10515	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
RDF_RS10520	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
RDF_RS10525	COG1475	DNA binding