RDF_RS00005 SM00382 ATPases associated with a variety of cellular activities RDF_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RDF_RS00010 SM00480 DNA polymerase III beta subunit RDF_RS00040 SM00487 DEAD-like helicases superfamily RDF_RS00040 SM00490 helicase superfamily c-terminal domain RDF_RS00040 SM00982 RDF_RS00040 RDF_RS00040 SM01058 CarD-like/TRCF domain RDF_RS00045 SM00363 S4 RNA-binding domain RDF_RS00065 SM00977 TilS substrate C-terminal domain RDF_RS00075 SM00382 ATPases associated with a variety of cellular activities RDF_RS00255 SM01400 RDF_RS00255 RDF_RS00290 SM01211 RDF_RS00290 RDF_RS00315 SM00798 AICARFT/IMPCHase bienzyme RDF_RS00315 SM00851 MGS-like domain RDF_RS00325 SM00257 Lysin motif RDF_RS00360 SM01130 RDF_RS00360 RDF_RS00380 SM01209 RDF_RS00380 RDF_RS00380 SM01210 RDF_RS00380 RDF_RS00385 SM01001 AIR carboxylase RDF_RS00400 SM00998 Adenylosuccinate lyase C-terminus RDF_RS00405 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS00410 SM00382 ATPases associated with a variety of cellular activities RDF_RS00415 SM00226 Low molecular weight phosphatase family RDF_RS00420 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. RDF_RS00435 SM00829 Enoylreductase RDF_RS00450 SM01403 RDF_RS00450 RDF_RS00470 SM01382 RDF_RS00470 RDF_RS00470 SM01383 RDF_RS00470 RDF_RS00485 SM00322 K homology RNA-binding domain RDF_RS00505 SM01374 RDF_RS00505 RDF_RS00510 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RDF_RS00565 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS00580 SM00662 RNA polymerases D RDF_RS00705 SM00855 Phosphoglycerate mutase family RDF_RS00715 SM00047 Lysozyme subfamily 2 RDF_RS00735 SM00271 DnaJ molecular chaperone homology domain RDF_RS00740 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS00800 SM00382 ATPases associated with a variety of cellular activities RDF_RS00805 SM00947 Carbonic anhydrase RDF_RS00830 SM00382 ATPases associated with a variety of cellular activities RDF_RS00845 SM00354 helix_turn _helix lactose operon repressor RDF_RS00855 SM00382 ATPases associated with a variety of cellular activities RDF_RS00860 SM00448 cheY-homologous receiver domain RDF_RS00860 SM00862 Transcriptional regulatory protein, C terminal RDF_RS00865 SM00387 Histidine kinase-like ATPases RDF_RS00865 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS00900 SM01120 RDF_RS00900 RDF_RS00900 SM01121 RDF_RS00900 RDF_RS00905 SM00244 prohibitin homologues RDF_RS00920 SM00382 ATPases associated with a variety of cellular activities RDF_RS00925 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS00950 SM00382 ATPases associated with a variety of cellular activities RDF_RS00980 SM00936 Penicillin-binding protein 5, C-terminal domain RDF_RS01000 SM00382 ATPases associated with a variety of cellular activities RDF_RS01005 SM00382 ATPases associated with a variety of cellular activities RDF_RS01040 SM00347 helix_turn_helix multiple antibiotic resistance protein RDF_RS01045 SM00382 ATPases associated with a variety of cellular activities RDF_RS01055 SM00892 DNA/RNA non-specific endonuclease RDF_RS01060 SM00363 S4 RNA-binding domain RDF_RS01075 SM00663 RNA polymerase I subunit A N-terminus RDF_RS01130 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS01190 SM00387 Histidine kinase-like ATPases RDF_RS01195 SM00448 cheY-homologous receiver domain RDF_RS01195 SM00850 LytTr DNA-binding domain RDF_RS01225 SM00382 ATPases associated with a variety of cellular activities RDF_RS01230 SM00382 ATPases associated with a variety of cellular activities RDF_RS01240 SM00642 Alpha-amylase domain RDF_RS01265 SM00861 Transketolase, pyrimidine binding domain RDF_RS01275 SM01387 RDF_RS01275 RDF_RS01280 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS01280 SM00322 K homology RNA-binding domain RDF_RS01300 SM00840 RDF_RS01300 RDF_RS01310 SM00967 RNA 2'-O ribose methyltransferase substrate binding RDF_RS01340 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS01430 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS01445 SM00487 DEAD-like helicases superfamily RDF_RS01490 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS01515 SM00116 Domain in cystathionine beta-synthase and other proteins. RDF_RS01515 SM00382 ATPases associated with a variety of cellular activities RDF_RS01625 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS01670 SM00382 ATPases associated with a variety of cellular activities RDF_RS01750 SM00861 Transketolase, pyrimidine binding domain RDF_RS01760 SM00382 ATPases associated with a variety of cellular activities RDF_RS01795 SM00740 RDF_RS01795 RDF_RS01805 SM00487 DEAD-like helicases superfamily RDF_RS01805 SM00490 helicase superfamily c-terminal domain RDF_RS01810 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS01820 SM00382 ATPases associated with a variety of cellular activities RDF_RS01870 SM00981 RDF_RS01870 RDF_RS01885 SM00322 K homology RNA-binding domain RDF_RS01885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RDF_RS01890 SM00382 ATPases associated with a variety of cellular activities RDF_RS01905 SM00421 helix_turn_helix, Lux Regulon RDF_RS01905 SM00448 cheY-homologous receiver domain RDF_RS01915 SM00072 Guanylate kinase homologues. RDF_RS01920 SM01409 RDF_RS01920 RDF_RS01925 SM00487 DEAD-like helicases superfamily RDF_RS01925 SM00490 helicase superfamily c-terminal domain RDF_RS01940 SM00331 Sigma factor PP2C-like phosphatases RDF_RS01940 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RDF_RS01945 SM00220 Serine/Threonine protein kinases, catalytic domain RDF_RS01945 SM00740 RDF_RS01945 RDF_RS01960 SM00421 helix_turn_helix, Lux Regulon RDF_RS01960 SM00448 cheY-homologous receiver domain RDF_RS01970 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS01980 SM00420 helix_turn_helix, Deoxyribose operon repressor RDF_RS01980 SM01134 RDF_RS01980 RDF_RS02030 SM00487 DEAD-like helicases superfamily RDF_RS02030 SM00490 helicase superfamily c-terminal domain RDF_RS02085 SM00347 helix_turn_helix multiple antibiotic resistance protein RDF_RS02105 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RDF_RS02110 SM00822 RDF_RS02110 RDF_RS02115 SM00825 Beta-ketoacyl synthase RDF_RS02130 SM00878 Biotin carboxylase C-terminal domain RDF_RS02235 SM00382 ATPases associated with a variety of cellular activities RDF_RS02265 SM00322 K homology RNA-binding domain RDF_RS02320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RDF_RS02320 SM00474 3'-5' exonuclease RDF_RS02320 SM00475 5'-3' exonuclease RDF_RS02320 SM00482 DNA polymerase A domain RDF_RS02325 SM00881 CoA binding domain RDF_RS02340 SM00448 cheY-homologous receiver domain RDF_RS02340 SM00862 Transcriptional regulatory protein, C terminal RDF_RS02345 SM00387 Histidine kinase-like ATPases RDF_RS02345 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS02370 SM00849 Metallo-beta-lactamase superfamily RDF_RS02425 SM00393 Putative single-stranded nucleic acids-binding domain RDF_RS02425 SM01245 RDF_RS02425 RDF_RS02530 SM00871 Bacterial transcription activator, effector binding domain RDF_RS02545 SM00422 helix_turn_helix, mercury resistance RDF_RS02570 SM00342 helix_turn_helix, arabinose operon control protein RDF_RS02715 SM00382 ATPases associated with a variety of cellular activities RDF_RS02720 SM00382 ATPases associated with a variety of cellular activities RDF_RS02735 SM00729 Elongator protein 3, MiaB family, Radical SAM RDF_RS02735 SM00876 Biotin and Thiamin Synthesis associated domain RDF_RS02755 SM00478 endonuclease III RDF_RS02775 SM00450 Rhodanese Homology Domain RDF_RS02780 SM00838 Elongation factor G C-terminus RDF_RS02805 SM00842 Cell division protein FtsA RDF_RS02810 SM00864 Tubulin/FtsZ family, GTPase domain RDF_RS02810 SM00865 Tubulin/FtsZ family, C-terminal domain RDF_RS02830 SM00363 S4 RNA-binding domain RDF_RS02855 SM00382 ATPases associated with a variety of cellular activities RDF_RS02855 SM01086 C-terminal, D2-small domain, of ClpB protein RDF_RS02870 SM00382 ATPases associated with a variety of cellular activities RDF_RS02905 SM00363 S4 RNA-binding domain RDF_RS02935 SM00411 bacterial (prokaryotic) histone like domain RDF_RS02970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RDF_RS02980 SM00831 Cation transporter/ATPase, N-terminus RDF_RS03000 SM00937 RDF_RS03000 RDF_RS03005 SM00382 ATPases associated with a variety of cellular activities RDF_RS03020 SM00849 Metallo-beta-lactamase superfamily RDF_RS03030 SM00479 RDF_RS03030 RDF_RS03030 SM00491 RDF_RS03030 RDF_RS03105 SM00830 Chorismate mutase type II RDF_RS03150 SM00382 ATPases associated with a variety of cellular activities RDF_RS03160 SM00448 cheY-homologous receiver domain RDF_RS03160 SM00862 Transcriptional regulatory protein, C terminal RDF_RS03190 SM00387 Histidine kinase-like ATPases RDF_RS03190 SM00433 TopoisomeraseII RDF_RS03215 SM01192 RDF_RS03215 RDF_RS03215 SM01193 RDF_RS03215 RDF_RS03220 SM00892 DNA/RNA non-specific endonuclease RDF_RS03270 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS03280 SM00889 Elongation factor G, domain IV RDF_RS03320 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS03365 SM00482 DNA polymerase A domain RDF_RS03385 SM00885 D5 N terminal like RDF_RS03385 SM00942 Primase C terminal 1 (PriCT-1) RDF_RS03390 SM00990 RDF_RS03390 RDF_RS03395 SM00487 DEAD-like helicases superfamily RDF_RS03425 SM00470 ParB-like nuclease domain RDF_RS03535 SM00047 Lysozyme subfamily 2 RDF_RS03535 SM00257 Lysin motif RDF_RS03540 SM00857 Resolvase, N terminal domain RDF_RS03545 SM00857 Resolvase, N terminal domain RDF_RS03555 SM00220 Serine/Threonine protein kinases, catalytic domain RDF_RS03605 SM00342 helix_turn_helix, arabinose operon control protein RDF_RS03630 SM00327 von Willebrand factor (vWF) type A domain RDF_RS03665 SM00382 ATPases associated with a variety of cellular activities RDF_RS03690 SM00822 RDF_RS03690 RDF_RS03705 SM00382 ATPases associated with a variety of cellular activities RDF_RS03725 SM00825 Beta-ketoacyl synthase RDF_RS03805 SM00382 ATPases associated with a variety of cellular activities RDF_RS03815 SM00892 DNA/RNA non-specific endonuclease RDF_RS03825 SM00382 ATPases associated with a variety of cellular activities RDF_RS03870 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS03870 SM00895 RDF_RS03870 RDF_RS03910 SM00354 helix_turn _helix lactose operon repressor RDF_RS03915 SM00642 Alpha-amylase domain RDF_RS03930 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RDF_RS03935 SM00448 cheY-homologous receiver domain RDF_RS03935 SM00862 Transcriptional regulatory protein, C terminal RDF_RS03960 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS03965 SM00382 ATPases associated with a variety of cellular activities RDF_RS03970 SM00448 cheY-homologous receiver domain RDF_RS03970 SM00862 Transcriptional regulatory protein, C terminal RDF_RS03975 SM00091 PAS domain RDF_RS03975 SM00387 Histidine kinase-like ATPases RDF_RS03975 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS03980 SM00849 Metallo-beta-lactamase superfamily RDF_RS03990 SM00358 Double-stranded RNA binding motif RDF_RS03990 SM00535 Ribonuclease III family RDF_RS03995 SM00968 SMC proteins Flexible Hinge Domain RDF_RS04010 SM00382 ATPases associated with a variety of cellular activities RDF_RS04010 SM00962 SRP54-type protein, GTPase domain RDF_RS04010 SM00963 SRP54-type protein, helical bundle domain RDF_RS04035 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS04035 SM00732 Likely ribonuclease with RNase H fold. RDF_RS04040 SM00731 SprT homologues. RDF_RS04130 SM00855 Phosphoglycerate mutase family RDF_RS04185 SM00855 Phosphoglycerate mutase family RDF_RS04195 SM00493 RDF_RS04195 RDF_RS04235 SM00382 ATPases associated with a variety of cellular activities RDF_RS04250 SM00487 DEAD-like helicases superfamily RDF_RS04250 SM00490 helicase superfamily c-terminal domain RDF_RS04265 SM00563 Phosphate acyltransferases RDF_RS04270 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RDF_RS04275 SM00849 Metallo-beta-lactamase superfamily RDF_RS04285 SM00354 helix_turn _helix lactose operon repressor RDF_RS04310 SM01061 CAT RNA binding domain RDF_RS04370 SM00363 S4 RNA-binding domain RDF_RS04410 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RDF_RS04435 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS04485 SM00487 DEAD-like helicases superfamily RDF_RS04485 SM00490 helicase superfamily c-terminal domain RDF_RS04500 SM00382 ATPases associated with a variety of cellular activities RDF_RS04545 SM00382 ATPases associated with a variety of cellular activities RDF_RS04585 SM00116 Domain in cystathionine beta-synthase and other proteins. RDF_RS04610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RDF_RS04610 SM00292 breast cancer carboxy-terminal domain RDF_RS04610 SM00532 Ligase N family RDF_RS04615 SM00046 Diacylglycerol kinase catalytic domain (presumed) RDF_RS04620 SM00642 Alpha-amylase domain RDF_RS04625 SM00642 Alpha-amylase domain RDF_RS04675 SM00382 ATPases associated with a variety of cellular activities RDF_RS04700 SM00892 DNA/RNA non-specific endonuclease RDF_RS04715 SM00873 B3/4 domain RDF_RS04715 SM00874 tRNA synthetase B5 domain RDF_RS04715 SM00896 Ferredoxin-fold anticodon binding domain RDF_RS04745 SM00382 ATPases associated with a variety of cellular activities RDF_RS04755 SM00861 Transketolase, pyrimidine binding domain RDF_RS04810 SM00729 Elongator protein 3, MiaB family, Radical SAM RDF_RS04855 SM00562 RDF_RS04855 RDF_RS04860 SM00838 Elongation factor G C-terminus RDF_RS04870 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RDF_RS04910 SM00382 ATPases associated with a variety of cellular activities RDF_RS04915 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS04920 SM00481 DNA polymerase alpha chain like domain RDF_RS04955 SM00382 ATPases associated with a variety of cellular activities RDF_RS04960 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS04990 SM00382 ATPases associated with a variety of cellular activities RDF_RS05015 SM00434 DNA Topoisomerase IV RDF_RS05105 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS05105 SM00866 RDF_RS05105 RDF_RS05135 SM00382 ATPases associated with a variety of cellular activities RDF_RS05145 SM00448 cheY-homologous receiver domain RDF_RS05145 SM00862 Transcriptional regulatory protein, C terminal RDF_RS05150 SM00387 Histidine kinase-like ATPases RDF_RS05175 SM00382 ATPases associated with a variety of cellular activities RDF_RS05175 SM00962 SRP54-type protein, GTPase domain RDF_RS05175 SM00963 SRP54-type protein, helical bundle domain RDF_RS05185 SM00387 Histidine kinase-like ATPases RDF_RS05185 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS05190 SM00448 cheY-homologous receiver domain RDF_RS05190 SM00862 Transcriptional regulatory protein, C terminal RDF_RS05205 SM00382 ATPases associated with a variety of cellular activities RDF_RS05210 SM00382 ATPases associated with a variety of cellular activities RDF_RS05250 SM00904 Riboflavin kinase RDF_RS05285 SM00382 ATPases associated with a variety of cellular activities RDF_RS05290 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RDF_RS05290 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RDF_RS05290 SM00493 RDF_RS05290 RDF_RS05305 SM00382 ATPases associated with a variety of cellular activities RDF_RS05320 SM01266 RDF_RS05320 RDF_RS05345 SM00448 cheY-homologous receiver domain RDF_RS05345 SM00850 LytTr DNA-binding domain RDF_RS05350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RDF_RS05490 SM00851 MGS-like domain RDF_RS05490 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RDF_RS05490 SM01209 RDF_RS05490 RDF_RS05495 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RDF_RS05515 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RDF_RS05525 SM00382 ATPases associated with a variety of cellular activities RDF_RS05535 SM00859 Semialdehyde dehydrogenase, NAD binding domain RDF_RS05545 SM00155 Phospholipase D. Active site motifs. RDF_RS05565 SM00506 Appr-1"-p processing enzyme RDF_RS05615 SM00382 ATPases associated with a variety of cellular activities RDF_RS05620 SM00382 ATPases associated with a variety of cellular activities RDF_RS05650 SM00937 RDF_RS05650 RDF_RS05695 SM01240 RDF_RS05695 RDF_RS05735 SM00954 Region found in RelA / SpoT proteins RDF_RS05740 SM01118 RDF_RS05740 RDF_RS05745 SM01400 RDF_RS05745 RDF_RS05760 SM00881 CoA binding domain RDF_RS05790 SM00342 helix_turn_helix, arabinose operon control protein RDF_RS05815 SM00382 ATPases associated with a variety of cellular activities RDF_RS05830 SM00905 Dihydroneopterin aldolase RDF_RS05895 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS05920 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS06030 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS06055 SM00434 DNA Topoisomerase IV RDF_RS06060 SM00387 Histidine kinase-like ATPases RDF_RS06060 SM00433 TopoisomeraseII RDF_RS06065 SM01207 RDF_RS06065 RDF_RS06070 SM00986 Uracil DNA glycosylase superfamily RDF_RS06070 SM00987 UreE urease accessory protein, C-terminal domain RDF_RS06095 SM00858 RDF_RS06095 RDF_RS06220 SM00849 Metallo-beta-lactamase superfamily RDF_RS06225 SM00382 ATPases associated with a variety of cellular activities RDF_RS06255 SM00028 Tetratricopeptide repeats RDF_RS06320 SM00728 Clostridial hydrophobic, with a conserved W residue, domain. RDF_RS06365 SM00642 Alpha-amylase domain RDF_RS06380 SM00986 Uracil DNA glycosylase superfamily RDF_RS06380 SM00987 UreE urease accessory protein, C-terminal domain RDF_RS06400 SM00465 GIY-YIG type nucleases (URI domain) RDF_RS06490 SM00479 RDF_RS06490 RDF_RS06490 SM00497 Intron encoded nuclease repeat motif RDF_RS06565 SM00382 ATPases associated with a variety of cellular activities RDF_RS06565 SM01086 C-terminal, D2-small domain, of ClpB protein RDF_RS06600 SM00382 ATPases associated with a variety of cellular activities RDF_RS06600 SM00994 ClpX C4-type zinc finger RDF_RS06600 SM01086 C-terminal, D2-small domain, of ClpB protein RDF_RS06640 SM00046 Diacylglycerol kinase catalytic domain (presumed) RDF_RS06675 SM00387 Histidine kinase-like ATPases RDF_RS06675 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS06680 SM00448 cheY-homologous receiver domain RDF_RS06680 SM00862 Transcriptional regulatory protein, C terminal RDF_RS06685 SM00954 Region found in RelA / SpoT proteins RDF_RS06690 SM00382 ATPases associated with a variety of cellular activities RDF_RS06695 SM00382 ATPases associated with a variety of cellular activities RDF_RS06700 SM00347 helix_turn_helix multiple antibiotic resistance protein RDF_RS06715 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RDF_RS06725 SM00382 ATPases associated with a variety of cellular activities RDF_RS06730 SM00382 ATPases associated with a variety of cellular activities RDF_RS06740 SM00382 ATPases associated with a variety of cellular activities RDF_RS06780 SM00420 helix_turn_helix, Deoxyribose operon repressor RDF_RS06780 SM01134 RDF_RS06780 RDF_RS06790 SM00287 Bacterial SH3 domain homologues RDF_RS06850 SM00382 ATPases associated with a variety of cellular activities RDF_RS06860 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RDF_RS06865 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RDF_RS06875 SM00363 S4 RNA-binding domain RDF_RS06905 SM00854 Bacterial capsule synthesis protein PGA_cap RDF_RS06910 SM00981 RDF_RS06910 RDF_RS06980 SM00257 Lysin motif RDF_RS07010 SM00382 ATPases associated with a variety of cellular activities RDF_RS07035 SM01131 RDF_RS07035 RDF_RS07045 SM01091 Transporter associated domain RDF_RS07055 SM00729 Elongator protein 3, MiaB family, Radical SAM RDF_RS07060 SM00014 Acid phosphatase homologues RDF_RS07185 SM00400 zinc finger RDF_RS07185 SM00493 RDF_RS07185 RDF_RS07205 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS07205 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RDF_RS07220 SM00450 Rhodanese Homology Domain RDF_RS07245 SM00354 helix_turn _helix lactose operon repressor RDF_RS07290 SM00957 SecA DEAD-like domain RDF_RS07290 SM00958 SecA preprotein cross-linking domain RDF_RS07360 SM00487 DEAD-like helicases superfamily RDF_RS07360 SM00490 helicase superfamily c-terminal domain RDF_RS07370 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS07370 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RDF_RS07375 SM00382 ATPases associated with a variety of cellular activities RDF_RS07415 SM00363 S4 RNA-binding domain RDF_RS07450 SM00316 Ribosomal protein S1-like RNA-binding domain RDF_RS07450 SM00955 RDF_RS07450 RDF_RS07470 SM00382 ATPases associated with a variety of cellular activities RDF_RS07480 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RDF_RS07480 SM01232 RDF_RS07480 RDF_RS07485 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS07490 SM00460 Transglutaminase/protease-like homologues RDF_RS07580 SM00382 ATPases associated with a variety of cellular activities RDF_RS07585 SM00382 ATPases associated with a variety of cellular activities RDF_RS07610 SM00649 Ribosomal protein L11/L12 RDF_RS07640 SM00382 ATPases associated with a variety of cellular activities RDF_RS07640 SM00843 RDF_RS07640 RDF_RS07655 SM00382 ATPases associated with a variety of cellular activities RDF_RS07665 SM00529 Helix-turn-helix diphteria tox regulatory element RDF_RS07665 SM00899 RDF_RS07665 RDF_RS07705 SM01022 RDF_RS07705 RDF_RS07840 SM00116 Domain in cystathionine beta-synthase and other proteins. RDF_RS07845 SM00382 ATPases associated with a variety of cellular activities RDF_RS07850 SM00382 ATPases associated with a variety of cellular activities RDF_RS07910 SM01234 RDF_RS07910 RDF_RS07915 SM00363 S4 RNA-binding domain RDF_RS07980 SM00967 RNA 2'-O ribose methyltransferase substrate binding RDF_RS08000 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS08035 SM00487 DEAD-like helicases superfamily RDF_RS08035 SM00490 helicase superfamily c-terminal domain RDF_RS08060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RDF_RS08060 SM00387 Histidine kinase-like ATPases RDF_RS08060 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS08065 SM00448 cheY-homologous receiver domain RDF_RS08065 SM00862 Transcriptional regulatory protein, C terminal RDF_RS08105 SM00382 ATPases associated with a variety of cellular activities RDF_RS08125 SM00829 Enoylreductase RDF_RS08135 SM00382 ATPases associated with a variety of cellular activities RDF_RS08135 SM00930 RDF_RS08135 RDF_RS08150 SM00062 Bacterial periplasmic substrate-binding proteins RDF_RS08180 SM01120 RDF_RS08180 RDF_RS08200 SM00422 helix_turn_helix, mercury resistance RDF_RS08230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RDF_RS08240 SM01103 RDF_RS08240 RDF_RS08260 SM00845 GatB domain RDF_RS08285 SM00116 Domain in cystathionine beta-synthase and other proteins. RDF_RS08320 SM00870 RDF_RS08320 RDF_RS08335 SM00487 DEAD-like helicases superfamily RDF_RS08335 SM00490 helicase superfamily c-terminal domain RDF_RS08345 SM01005 Alanine racemase, C-terminal domain RDF_RS08360 SM00957 SecA DEAD-like domain RDF_RS08360 SM00958 SecA preprotein cross-linking domain RDF_RS08380 SM00640 Glycosyl hydrolases family 32 RDF_RS08385 SM00354 helix_turn _helix lactose operon repressor RDF_RS08400 SM00841 Elongation factor P, C-terminal RDF_RS08400 SM01185 RDF_RS08400 RDF_RS08435 SM00382 ATPases associated with a variety of cellular activities RDF_RS08465 SM00478 endonuclease III RDF_RS08470 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS08480 SM00014 Acid phosphatase homologues RDF_RS08485 SM00463 Small MutS-related domain RDF_RS08485 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RDF_RS08485 SM00534 ATPase domain of DNA mismatch repair MUTS family RDF_RS08510 SM00382 ATPases associated with a variety of cellular activities RDF_RS08565 SM00419 helix_turn_helix, cAMP Regulatory protein RDF_RS08570 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RDF_RS08570 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal RDF_RS08585 SM00382 ATPases associated with a variety of cellular activities RDF_RS08590 SM00382 ATPases associated with a variety of cellular activities RDF_RS08630 SM00861 Transketolase, pyrimidine binding domain RDF_RS08720 SM00422 helix_turn_helix, mercury resistance RDF_RS08725 SM00479 RDF_RS08725 RDF_RS08775 SM00849 Metallo-beta-lactamase superfamily RDF_RS08785 SM01230 RDF_RS08785 RDF_RS08790 SM00422 helix_turn_helix, mercury resistance RDF_RS08810 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RDF_RS08815 SM00838 Elongation factor G C-terminus RDF_RS08815 SM00889 Elongation factor G, domain IV RDF_RS08845 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RDF_RS08865 SM00650 Ribosomal RNA adenine dimethylases RDF_RS08875 SM00493 RDF_RS08875 RDF_RS08930 SM00387 Histidine kinase-like ATPases RDF_RS08930 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS08935 SM00448 cheY-homologous receiver domain RDF_RS08935 SM00862 Transcriptional regulatory protein, C terminal RDF_RS08955 SM00382 ATPases associated with a variety of cellular activities RDF_RS09005 SM00354 helix_turn _helix lactose operon repressor RDF_RS09015 SM01007 Class II Aldolase and Adducin N-terminal domain RDF_RS09025 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RDF_RS09055 SM00788 Adenylosuccinate synthetase RDF_RS09115 SM00382 ATPases associated with a variety of cellular activities RDF_RS09115 SM01086 C-terminal, D2-small domain, of ClpB protein RDF_RS09185 SM00100 Cyclic nucleotide-monophosphate binding domain RDF_RS09195 SM00354 helix_turn _helix lactose operon repressor RDF_RS09255 SM00347 helix_turn_helix multiple antibiotic resistance protein RDF_RS09260 SM00479 RDF_RS09260 RDF_RS09260 SM00481 DNA polymerase alpha chain like domain RDF_RS09265 SM00047 Lysozyme subfamily 2 RDF_RS09290 SM01323 RDF_RS09290 RDF_RS09300 SM00919 Malic enzyme, NAD binding domain RDF_RS09300 SM01274 RDF_RS09300 RDF_RS09315 SM00448 cheY-homologous receiver domain RDF_RS09325 SM00642 Alpha-amylase domain RDF_RS09330 SM00382 ATPases associated with a variety of cellular activities RDF_RS09345 SM01133 RDF_RS09345 RDF_RS09385 SM00420 helix_turn_helix, Deoxyribose operon repressor RDF_RS09385 SM01134 RDF_RS09385 RDF_RS09405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RDF_RS09405 SM00954 Region found in RelA / SpoT proteins RDF_RS09440 SM00342 helix_turn_helix, arabinose operon control protein RDF_RS09440 SM00448 cheY-homologous receiver domain RDF_RS09495 SM00448 cheY-homologous receiver domain RDF_RS09495 SM00850 LytTr DNA-binding domain RDF_RS09510 SM00387 Histidine kinase-like ATPases RDF_RS09510 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS09515 SM00448 cheY-homologous receiver domain RDF_RS09515 SM00862 Transcriptional regulatory protein, C terminal RDF_RS09525 SM00382 ATPases associated with a variety of cellular activities RDF_RS09565 SM00422 helix_turn_helix, mercury resistance RDF_RS09595 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS09605 SM00382 ATPases associated with a variety of cellular activities RDF_RS09715 SM00382 ATPases associated with a variety of cellular activities RDF_RS09725 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS09730 SM00014 Acid phosphatase homologues RDF_RS09750 SM00450 Rhodanese Homology Domain RDF_RS09800 SM00448 cheY-homologous receiver domain RDF_RS09800 SM00862 Transcriptional regulatory protein, C terminal RDF_RS09805 SM00387 Histidine kinase-like ATPases RDF_RS09805 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS09830 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RDF_RS09830 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RDF_RS09865 SM01133 RDF_RS09865 RDF_RS09880 SM00345 helix_turn_helix gluconate operon transcriptional repressor RDF_RS09895 SM00883 Chaperonin 10 Kd subunit RDF_RS09900 SM00382 ATPases associated with a variety of cellular activities RDF_RS09970 SM00732 Likely ribonuclease with RNase H fold. RDF_RS09985 SM00382 ATPases associated with a variety of cellular activities RDF_RS09990 SM00852 Probable molybdopterin binding domain RDF_RS10000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RDF_RS10010 SM00853 MutL C terminal dimerisation domain RDF_RS10010 SM01340 RDF_RS10010 RDF_RS10015 SM00357 Cold shock protein domain RDF_RS10020 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RDF_RS10020 SM00534 ATPase domain of DNA mismatch repair MUTS family RDF_RS10030 SM00836 DALR anticodon binding domain RDF_RS10030 SM01016 Arginyl tRNA synthetase N terminal dom RDF_RS10075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RDF_RS10140 SM00448 cheY-homologous receiver domain RDF_RS10140 SM00862 Transcriptional regulatory protein, C terminal RDF_RS10145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RDF_RS10145 SM00387 Histidine kinase-like ATPases RDF_RS10145 SM00388 His Kinase A (phosphoacceptor) domain RDF_RS10165 SM00387 Histidine kinase-like ATPases RDF_RS10170 SM00448 cheY-homologous receiver domain RDF_RS10175 SM00382 ATPases associated with a variety of cellular activities RDF_RS10255 SM00942 Primase C terminal 1 (PriCT-1) RDF_RS10290 SM01040 BRO family, N-terminal domain RDF_RS10295 SM01040 BRO family, N-terminal domain RDF_RS10305 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS10320 SM00363 S4 RNA-binding domain RDF_RS10320 SM01390 RDF_RS10320 RDF_RS10345 SM01228 RDF_RS10345 RDF_RS10375 SM00257 Lysin motif RDF_RS10385 SM00382 ATPases associated with a variety of cellular activities RDF_RS10390 SM00382 ATPases associated with a variety of cellular activities RDF_RS10425 SM00530 Helix-turn-helix XRE-family like proteins RDF_RS10430 SM00116 Domain in cystathionine beta-synthase and other proteins. RDF_RS10430 SM01240 RDF_RS10430 RDF_RS10440 SM00419 helix_turn_helix, cAMP Regulatory protein RDF_RS10445 SM00873 B3/4 domain RDF_RS10490 SM00382 ATPases associated with a variety of cellular activities RDF_RS10520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RDF_RS10525 SM00470 ParB-like nuclease domain