locus-tag class description DY328_RS00010 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS00010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS00015 PF00486 Transcriptional regulatory protein, C terminal DY328_RS00015 PF00072 Response regulator receiver domain DY328_RS00020 PF04607 Region found in RelA / SpoT proteins DY328_RS00025 PF00664 ABC transporter transmembrane region DY328_RS00025 PF00005 ABC transporter DY328_RS00040 PF00149 Calcineurin-like phosphoesterase DY328_RS00040 PF17936 Bacterial Ig domain DY328_RS00040 PF02872 5'-nucleotidase, C-terminal domain DY328_RS00045 PF01327 Polypeptide deformylase DY328_RS00050 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DY328_RS00050 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DY328_RS00060 PF00005 ABC transporter DY328_RS00060 PF00664 ABC transporter transmembrane region DY328_RS00065 PF00005 ABC transporter DY328_RS00065 PF00664 ABC transporter transmembrane region DY328_RS00075 PF00005 ABC transporter DY328_RS00075 PF16326 ABC transporter C-terminal domain DY328_RS00075 PF12848 ABC transporter DY328_RS00080 PF13735 tRNA nucleotidyltransferase domain 2 putative DY328_RS00080 PF01743 Poly A polymerase head domain DY328_RS00080 PF12627 Probable RNA and SrmB- binding site of polymerase A DY328_RS00085 PF02645 Uncharacterised protein, DegV family COG1307 DY328_RS00105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DY328_RS00105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DY328_RS00110 PF00294 pfkB family carbohydrate kinase DY328_RS00115 PF08220 DeoR-like helix-turn-helix domain DY328_RS00115 PF00455 DeoR C terminal sensor domain DY328_RS00120 PF01476 LysM domain DY328_RS00120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DY328_RS00130 PF08546 Ketopantoate reductase PanE/ApbA C terminal DY328_RS00130 PF02558 Ketopantoate reductase PanE/ApbA DY328_RS00140 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS00145 PF01746 tRNA (Guanine-1)-methyltransferase DY328_RS00150 PF01782 RimM N-terminal domain DY328_RS00150 PF05239 PRC-barrel domain DY328_RS00175 PF00886 Ribosomal protein S16 DY328_RS00180 PF12704 MacB-like periplasmic core domain DY328_RS00180 PF02687 FtsX-like permease family DY328_RS00185 PF00005 ABC transporter DY328_RS00190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DY328_RS00195 PF02142 MGS-like domain DY328_RS00195 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DY328_RS00195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DY328_RS00200 PF00117 Glutamine amidotransferase class-I DY328_RS00200 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DY328_RS00205 PF00156 Phosphoribosyl transferase domain DY328_RS00210 PF01479 S4 domain DY328_RS00210 PF00849 RNA pseudouridylate synthase DY328_RS00215 PF01252 Signal peptidase (SPase) II DY328_RS00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DY328_RS00220 PF03466 LysR substrate binding domain DY328_RS00225 PF01016 Ribosomal L27 protein DY328_RS00235 PF00829 Ribosomal prokaryotic L21 protein DY328_RS00245 PF02926 THUMP domain DY328_RS00245 PF02568 Thiamine biosynthesis protein (ThiI) DY328_RS00250 PF00266 Aminotransferase class-V DY328_RS00260 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS00260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS00265 PF06133 Control of competence regulator ComK, YlbF/YmcA DY328_RS00270 PF01264 Chorismate synthase DY328_RS00275 PF01761 3-dehydroquinate synthase DY328_RS00280 PF01487 Type I 3-dehydroquinase DY328_RS00285 PF17785 PUA-like domain DY328_RS00285 PF10672 S-adenosylmethionine-dependent methyltransferase DY328_RS00290 PF00884 Sulfatase DY328_RS00295 PF00453 Ribosomal protein L20 DY328_RS00300 PF01632 Ribosomal protein L35 DY328_RS00305 PF00707 Translation initiation factor IF-3, C-terminal domain DY328_RS00305 PF05198 Translation initiation factor IF-3, N-terminal domain DY328_RS00310 PF02224 Cytidylate kinase DY328_RS00330 PF01546 Peptidase family M20/M25/M40 DY328_RS00330 PF07687 Peptidase dimerisation domain DY328_RS00335 PF01943 Polysaccharide biosynthesis protein DY328_RS00335 PF14667 Polysaccharide biosynthesis C-terminal domain DY328_RS00340 PF02875 Mur ligase family, glutamate ligase domain DY328_RS00340 PF08245 Mur ligase middle domain DY328_RS00345 PF00005 ABC transporter DY328_RS00350 PF01497 Periplasmic binding protein DY328_RS00355 PF01032 FecCD transport family DY328_RS00360 PF01032 FecCD transport family DY328_RS00370 PF02833 DHHA2 domain DY328_RS00370 PF01368 DHH family DY328_RS00375 PF04055 Radical SAM superfamily DY328_RS00380 PF00571 CBS domain DY328_RS00380 PF01595 Cyclin M transmembrane N-terminal domain DY328_RS00380 PF03471 Transporter associated domain DY328_RS00385 PF06962 Putative rRNA methylase DY328_RS00390 PF16199 Radical_SAM C-terminal domain DY328_RS00390 PF04055 Radical SAM superfamily DY328_RS00395 PF01569 PAP2 superfamily DY328_RS00400 PF12822 ECF transporter, substrate-specific component DY328_RS00440 PF00534 Glycosyl transferases group 1 DY328_RS00440 PF08323 Starch synthase catalytic domain DY328_RS00445 PF00535 Glycosyl transferase family 2 DY328_RS00450 PF01943 Polysaccharide biosynthesis protein DY328_RS00450 PF14667 Polysaccharide biosynthesis C-terminal domain DY328_RS00465 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DY328_RS00465 PF00535 Glycosyl transferase family 2 DY328_RS00475 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DY328_RS00480 PF04991 LicD family DY328_RS00495 PF00535 Glycosyl transferase family 2 DY328_RS00500 PF00535 Glycosyl transferase family 2 DY328_RS00510 PF04321 RmlD substrate binding domain DY328_RS00515 PF01883 Iron-sulfur cluster assembly protein DY328_RS00520 PF04542 Sigma-70 region 2 DY328_RS00520 PF04545 Sigma-70, region 4 DY328_RS00520 PF00140 Sigma-70 factor, region 1.2 DY328_RS00520 PF03979 Sigma-70 factor, region 1.1 DY328_RS00520 PF04539 Sigma-70 region 3 DY328_RS00525 PF08275 DNA primase catalytic core, N-terminal domain DY328_RS00525 PF10410 DnaB-helicase binding domain of primase DY328_RS00525 PF01807 CHC2 zinc finger DY328_RS00530 PF01741 Large-conductance mechanosensitive channel, MscL DY328_RS00535 PF01165 Ribosomal protein S21 DY328_RS00545 PF00497 Bacterial extracellular solute-binding proteins, family 3 DY328_RS00550 PF00909 Ammonium Transporter Family DY328_RS00560 PF00581 Rhodanese-like domain DY328_RS00560 PF12368 Rhodanase C-terminal DY328_RS00560 PF17773 UPF0176 acylphosphatase like domain DY328_RS00570 PF07690 Major Facilitator Superfamily DY328_RS00580 PF00343 Carbohydrate phosphorylase DY328_RS00585 PF02446 4-alpha-glucanotransferase DY328_RS00590 PF00356 Bacterial regulatory proteins, lacI family DY328_RS00590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DY328_RS00600 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS00605 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS00610 PF00854 POT family DY328_RS00630 PF00534 Glycosyl transferases group 1 DY328_RS00635 PF07517 SecA DEAD-like domain DY328_RS00635 PF07516 SecA Wing and Scaffold domain DY328_RS00635 PF01043 SecA preprotein cross-linking domain DY328_RS00645 PF16929 Accessory Sec system GspB-transporter DY328_RS00650 PF16993 Accessory Sec system protein Asp1 DY328_RS00660 PF13610 DDE domain DY328_RS00680 PF12848 ABC transporter DY328_RS00680 PF00005 ABC transporter DY328_RS00700 PF13427 Domain of unknown function (DUF4111) DY328_RS00700 PF01909 Nucleotidyltransferase domain DY328_RS00705 PF00156 Phosphoribosyl transferase domain DY328_RS00710 PF04439 Streptomycin adenylyltransferase DY328_RS00715 PF01131 DNA topoisomerase DY328_RS00715 PF01751 Toprim domain DY328_RS00720 PF01348 Type II intron maturase DY328_RS00720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DY328_RS00725 PF01751 Toprim domain DY328_RS00725 PF01131 DNA topoisomerase DY328_RS00735 PF13610 DDE domain DY328_RS00750 PF01076 Plasmid recombination enzyme DY328_RS00755 PF00302 Chloramphenicol acetyltransferase DY328_RS00760 PF02486 Replication initiation factor DY328_RS00770 PF07690 Major Facilitator Superfamily DY328_RS00775 PF13610 DDE domain DY328_RS00780 PF02151 UvrB/uvrC motif DY328_RS00780 PF12344 Ultra-violet resistance protein B DY328_RS00780 PF04851 Type III restriction enzyme, res subunit DY328_RS00780 PF17757 UvrB interaction domain DY328_RS00780 PF00271 Helicase conserved C-terminal domain DY328_RS00790 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS00795 PF00005 ABC transporter DY328_RS00810 PF01926 50S ribosome-binding GTPase DY328_RS00810 PF01018 GTP1/OBG DY328_RS00810 PF09269 Domain of unknown function (DUF1967) DY328_RS00820 PF02073 Thermophilic metalloprotease (M29) DY328_RS00830 PF01425 Amidase DY328_RS00835 PF01479 S4 domain DY328_RS00835 PF00849 RNA pseudouridylate synthase DY328_RS00840 PF00248 Aldo/keto reductase family DY328_RS00850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DY328_RS00855 PF00535 Glycosyl transferase family 2 DY328_RS00860 PF00324 Amino acid permease DY328_RS00865 PF01668 SmpB protein DY328_RS00870 PF17876 Cold shock domain DY328_RS00870 PF08206 Ribonuclease B OB domain DY328_RS00870 PF00773 RNB domain DY328_RS00870 PF00575 S1 RNA binding domain DY328_RS00880 PF00471 Ribosomal protein L33 DY328_RS00885 PF07690 Major Facilitator Superfamily DY328_RS00885 PF00083 Sugar (and other) transporter DY328_RS00895 PF00005 ABC transporter DY328_RS00895 PF13732 Domain of unknown function (DUF4162) DY328_RS00900 PF01121 Dephospho-CoA kinase DY328_RS00905 PF06827 Zinc finger found in FPG and IleRS DY328_RS00905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DY328_RS00905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DY328_RS00910 PF01381 Helix-turn-helix DY328_RS00960 PF07650 KH domain DY328_RS00960 PF01926 50S ribosome-binding GTPase DY328_RS00965 PF01219 Prokaryotic diacylglycerol kinase DY328_RS00970 PF02130 Uncharacterized protein family UPF0054 DY328_RS00990 PF13344 Haloacid dehalogenase-like hydrolase DY328_RS00990 PF00293 NUDIX domain DY328_RS01000 PF02562 PhoH-like protein DY328_RS01005 PF06100 MCRA family DY328_RS01010 PF06855 YozE SAM-like fold DY328_RS01015 PF01625 Peptide methionine sulfoxide reductase DY328_RS01025 PF01765 Ribosome recycling factor DY328_RS01030 PF00696 Amino acid kinase family DY328_RS01035 PF00005 ABC transporter DY328_RS01040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DY328_RS01040 PF00005 ABC transporter DY328_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS01045 PF12911 N-terminal TM domain of oligopeptide transport permease C DY328_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS01055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DY328_RS01060 PF00687 Ribosomal protein L1p/L10e family DY328_RS01065 PF03946 Ribosomal protein L11, N-terminal domain DY328_RS01065 PF00298 Ribosomal protein L11, RNA binding domain DY328_RS01075 PF07690 Major Facilitator Superfamily DY328_RS01080 PF07687 Peptidase dimerisation domain DY328_RS01080 PF01546 Peptidase family M20/M25/M40 DY328_RS01085 PF03466 LysR substrate binding domain DY328_RS01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DY328_RS01105 PF00425 chorismate binding enzyme DY328_RS01105 PF04715 Anthranilate synthase component I, N terminal region DY328_RS01110 PF17854 FtsK alpha domain DY328_RS01110 PF01580 FtsK/SpoIIIE family DY328_RS01110 PF09397 Ftsk gamma domain DY328_RS01115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DY328_RS01120 PF00950 ABC 3 transport family DY328_RS01125 PF00005 ABC transporter DY328_RS01130 PF01297 Zinc-uptake complex component A periplasmic DY328_RS01140 PF01048 Phosphorylase superfamily DY328_RS01150 PF00293 NUDIX domain DY328_RS01155 PF00132 Bacterial transferase hexapeptide (six repeats) DY328_RS01155 PF14602 Hexapeptide repeat of succinyl-transferase DY328_RS01155 PF12804 MobA-like NTP transferase domain DY328_RS01175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DY328_RS01175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DY328_RS01210 PF00535 Glycosyl transferase family 2 DY328_RS01245 PF05525 Branched-chain amino acid transport protein DY328_RS01250 PF09334 tRNA synthetases class I (M) DY328_RS01250 PF01588 Putative tRNA binding domain DY328_RS01255 PF09313 Domain of unknown function (DUF1971) DY328_RS01255 PF03848 Tellurite resistance protein TehB DY328_RS01270 PF02378 Phosphotransferase system, EIIC DY328_RS01280 PF03372 Endonuclease/Exonuclease/phosphatase family DY328_RS01285 PF03960 ArsC family DY328_RS01290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DY328_RS01290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DY328_RS01295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DY328_RS01295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DY328_RS01310 PF03932 CutC family DY328_RS01325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DY328_RS01330 PF06156 Initiation control protein YabA DY328_RS01335 PF09115 DNA polymerase III, delta subunit, C terminal DY328_RS01340 PF02223 Thymidylate kinase DY328_RS01350 PF00571 CBS domain DY328_RS01355 PF00005 ABC transporter DY328_RS01360 PF00005 ABC transporter DY328_RS01360 PF12399 Branched-chain amino acid ATP-binding cassette transporter DY328_RS01365 PF11862 Domain of unknown function (DUF3382) DY328_RS01365 PF02653 Branched-chain amino acid transport system / permease component DY328_RS01370 PF02653 Branched-chain amino acid transport system / permease component DY328_RS01375 PF13458 Periplasmic binding protein DY328_RS01380 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DY328_RS01385 PF00574 Clp protease DY328_RS01395 PF00155 Aminotransferase class I and II DY328_RS01400 PF00588 SpoU rRNA Methylase family DY328_RS01405 PF13520 Amino acid permease DY328_RS01410 PF02080 TrkA-C domain DY328_RS01410 PF02254 TrkA-N domain DY328_RS01415 PF02386 Cation transport protein DY328_RS01420 PF01809 Putative membrane protein insertion efficiency factor DY328_RS01425 PF00849 RNA pseudouridylate synthase DY328_RS01425 PF01479 S4 domain DY328_RS01430 PF04079 Segregation and condensation complex subunit ScpB DY328_RS01435 PF02616 Segregation and condensation protein ScpA DY328_RS01440 PF00589 Phage integrase family DY328_RS01455 PF01725 Ham1 family DY328_RS01460 PF01177 Asp/Glu/Hydantoin racemase DY328_RS01465 PF03672 Uncharacterised protein family (UPF0154) DY328_RS01475 PF08279 HTH domain DY328_RS01475 PF02829 3H domain DY328_RS01480 PF01027 Inhibitor of apoptosis-promoting Bax1 DY328_RS01490 PF00588 SpoU rRNA Methylase family DY328_RS01490 PF08032 RNA 2'-O ribose methyltransferase substrate binding DY328_RS01495 PF00708 Acylphosphatase DY328_RS01500 PF02096 60Kd inner membrane protein DY328_RS01505 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS01510 PF00497 Bacterial extracellular solute-binding proteins, family 3 DY328_RS01515 PF01425 Amidase DY328_RS01520 PF03449 Transcription elongation factor, N-terminal DY328_RS01520 PF01272 Transcription elongation factor, GreA/GreB, C-term DY328_RS01525 PF02618 YceG-like family DY328_RS01535 PF01225 Mur ligase family, catalytic domain DY328_RS01535 PF02875 Mur ligase family, glutamate ligase domain DY328_RS01535 PF08245 Mur ligase middle domain DY328_RS01550 PF00176 SNF2 family N-terminal domain DY328_RS01550 PF04434 SWIM zinc finger DY328_RS01550 PF00271 Helicase conserved C-terminal domain DY328_RS01555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DY328_RS01555 PF01926 50S ribosome-binding GTPase DY328_RS01560 PF07319 Primosomal protein DnaI N-terminus DY328_RS01560 PF01695 IstB-like ATP binding protein DY328_RS01570 PF03477 ATP cone domain DY328_RS01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS01575 PF18719 ArlS sensor domain DY328_RS01575 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS01580 PF00072 Response regulator receiver domain DY328_RS01580 PF00486 Transcriptional regulatory protein, C terminal DY328_RS01590 PF01435 Peptidase family M48 DY328_RS01595 PF04011 LemA family DY328_RS01600 PF02527 rRNA small subunit methyltransferase G DY328_RS01605 PF02386 Cation transport protein DY328_RS01610 PF02080 TrkA-C domain DY328_RS01610 PF02254 TrkA-N domain DY328_RS01620 PF12558 ATP-binding cassette cobalt transporter DY328_RS01620 PF00005 ABC transporter DY328_RS01625 PF07155 ECF-type riboflavin transporter, S component DY328_RS01630 PF00375 Sodium:dicarboxylate symporter family DY328_RS01635 PF05525 Branched-chain amino acid transport protein DY328_RS01640 PF08240 Alcohol dehydrogenase GroES-like domain DY328_RS01640 PF13823 Alcohol dehydrogenase GroES-associated DY328_RS01640 PF00107 Zinc-binding dehydrogenase DY328_RS01645 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS01650 PF09383 NIL domain DY328_RS01650 PF00005 ABC transporter DY328_RS01655 PF01546 Peptidase family M20/M25/M40 DY328_RS01655 PF07687 Peptidase dimerisation domain DY328_RS01660 PF03180 NLPA lipoprotein DY328_RS01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 DY328_RS01670 PF07722 Peptidase C26 DY328_RS01680 PF01709 Transcriptional regulator DY328_RS01690 PF02733 Dak1 domain DY328_RS01695 PF00440 Bacterial regulatory proteins, tetR family DY328_RS01695 PF14278 Transcriptional regulator C-terminal region DY328_RS01705 PF02733 Dak1 domain DY328_RS01710 PF02734 DAK2 domain DY328_RS01715 PF03610 PTS system fructose IIA component DY328_RS01720 PF00230 Major intrinsic protein DY328_RS01730 PF07739 TipAS antibiotic-recognition domain DY328_RS01730 PF13411 MerR HTH family regulatory protein DY328_RS01735 PF05636 HIGH Nucleotidyl Transferase DY328_RS01745 PF13649 Methyltransferase domain DY328_RS01760 PF01966 HD domain DY328_RS01765 PF01467 Cytidylyltransferase-like DY328_RS01770 PF01985 CRS1 / YhbY (CRM) domain DY328_RS01775 PF01926 50S ribosome-binding GTPase DY328_RS01790 PF02637 GatB domain DY328_RS01790 PF02934 GatB/GatE catalytic domain DY328_RS01795 PF01425 Amidase DY328_RS01800 PF02686 Glu-tRNAGln amidotransferase C subunit DY328_RS01805 PF00391 PEP-utilising enzyme, mobile domain DY328_RS01805 PF02896 PEP-utilising enzyme, TIM barrel domain DY328_RS01805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DY328_RS01810 PF03618 Kinase/pyrophosphorylase DY328_RS01815 PF00571 CBS domain DY328_RS01815 PF08279 HTH domain DY328_RS01820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DY328_RS01820 PF00378 Enoyl-CoA hydratase/isomerase DY328_RS01820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DY328_RS01825 PF00857 Isochorismatase family DY328_RS01830 PF06018 CodY GAF-like domain DY328_RS01830 PF08222 CodY helix-turn-helix domain DY328_RS01835 PF00155 Aminotransferase class I and II DY328_RS01840 PF00582 Universal stress protein family DY328_RS01850 PF00710 Asparaginase, N-terminal DY328_RS01850 PF17763 Glutaminase/Asparaginase C-terminal domain DY328_RS01855 PF08501 Shikimate dehydrogenase substrate binding domain DY328_RS01855 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DY328_RS01860 PF00248 Aldo/keto reductase family DY328_RS01865 PF00270 DEAD/DEAH box helicase DY328_RS01865 PF17191 RecG wedge domain DY328_RS01865 PF00271 Helicase conserved C-terminal domain DY328_RS01870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DY328_RS01870 PF05257 CHAP domain DY328_RS01875 PF01168 Alanine racemase, N-terminal domain DY328_RS01875 PF00842 Alanine racemase, C-terminal domain DY328_RS01880 PF01648 4'-phosphopantetheinyl transferase superfamily DY328_RS01885 PF00793 DAHP synthetase I family DY328_RS01890 PF02810 SEC-C motif DY328_RS01890 PF07516 SecA Wing and Scaffold domain DY328_RS01890 PF01043 SecA preprotein cross-linking domain DY328_RS01890 PF07517 SecA DEAD-like domain DY328_RS01895 PF01609 Transposase DDE domain DY328_RS01895 PF13808 DDE_Tnp_1-associated DY328_RS01900 PF01238 Phosphomannose isomerase type I DY328_RS01905 PF00480 ROK family DY328_RS01910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DY328_RS01910 PF00367 phosphotransferase system, EIIB DY328_RS01910 PF02378 Phosphotransferase system, EIIC DY328_RS01915 PF00251 Glycosyl hydrolases family 32 N-terminal domain DY328_RS01915 PF08244 Glycosyl hydrolases family 32 C terminal DY328_RS01920 PF00356 Bacterial regulatory proteins, lacI family DY328_RS01925 PF01029 NusB family DY328_RS01930 PF03780 Asp23 family, cell envelope-related function DY328_RS01935 PF09285 Elongation factor P, C-terminal DY328_RS01935 PF08207 Elongation factor P (EF-P) KOW-like domain DY328_RS01935 PF01132 Elongation factor P (EF-P) OB domain DY328_RS01990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DY328_RS02005 PF07690 Major Facilitator Superfamily DY328_RS02015 PF00005 ABC transporter DY328_RS02015 PF17755 UvrA DNA-binding domain DY328_RS02015 PF17760 UvrA interaction domain DY328_RS02030 PF01084 Ribosomal protein S18 DY328_RS02035 PF00436 Single-strand binding protein family DY328_RS02040 PF01250 Ribosomal protein S6 DY328_RS02045 PF14815 NUDIX domain DY328_RS02045 PF00730 HhH-GPD superfamily base excision DNA repair protein DY328_RS02050 PF01381 Helix-turn-helix DY328_RS02055 PF00085 Thioredoxin DY328_RS02065 PF00488 MutS domain V DY328_RS02065 PF01713 Smr domain DY328_RS02080 PF01351 Ribonuclease HII DY328_RS02080 PF11858 Domain of unknown function (DUF3378) DY328_RS02085 PF10502 Signal peptidase, peptidase S26 DY328_RS02090 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DY328_RS02090 PF13538 UvrD-like helicase C-terminal domain DY328_RS02090 PF14490 Helix-hairpin-helix containing domain DY328_RS02100 PF00817 impB/mucB/samB family DY328_RS02100 PF11798 IMS family HHH motif DY328_RS02100 PF11799 impB/mucB/samB family C-terminal domain DY328_RS02105 PF01228 Glycine radical DY328_RS02105 PF02901 Pyruvate formate lyase-like DY328_RS02110 PF01243 Pyridoxamine 5'-phosphate oxidase DY328_RS02115 PF00144 Beta-lactamase DY328_RS02130 PF00230 Major intrinsic protein DY328_RS02140 PF07690 Major Facilitator Superfamily DY328_RS02145 PF13545 Crp-like helix-turn-helix domain DY328_RS02150 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal DY328_RS02150 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DY328_RS02150 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DY328_RS02160 PF00348 Polyprenyl synthetase DY328_RS02165 PF00005 ABC transporter DY328_RS02165 PF00664 ABC transporter transmembrane region DY328_RS02170 PF00005 ABC transporter DY328_RS02170 PF00664 ABC transporter transmembrane region DY328_RS02175 PF02322 Cytochrome bd terminal oxidase subunit II DY328_RS02180 PF01654 Cytochrome bd terminal oxidase subunit I DY328_RS02185 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS02210 PF02575 YbaB/EbfC DNA-binding family DY328_RS02220 PF07739 TipAS antibiotic-recognition domain DY328_RS02220 PF13411 MerR HTH family regulatory protein DY328_RS02230 PF08279 HTH domain DY328_RS02230 PF04394 Protein of unknown function, DUF536 DY328_RS02245 PF00253 Ribosomal protein S14p/S29e DY328_RS02260 PF00814 Glycoprotease family DY328_RS02265 PF00583 Acetyltransferase (GNAT) family DY328_RS02270 PF00814 Glycoprotease family DY328_RS02275 PF07288 Protein of unknown function (DUF1447) DY328_RS02280 PF17770 Ribonuclease J C-terminal domain DY328_RS02280 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DY328_RS02280 PF00753 Metallo-beta-lactamase superfamily DY328_RS02285 PF01476 LysM domain DY328_RS02285 PF05257 CHAP domain DY328_RS02290 PF03951 Glutamine synthetase, beta-Grasp domain DY328_RS02290 PF00120 Glutamine synthetase, catalytic domain DY328_RS02295 PF13411 MerR HTH family regulatory protein DY328_RS02305 PF00162 Phosphoglycerate kinase DY328_RS02310 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DY328_RS02315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DY328_RS02315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DY328_RS02320 PF03144 Elongation factor Tu domain 2 DY328_RS02320 PF00009 Elongation factor Tu GTP binding domain DY328_RS02320 PF03764 Elongation factor G, domain IV DY328_RS02320 PF00679 Elongation factor G C-terminus DY328_RS02320 PF14492 Elongation Factor G, domain II DY328_RS02325 PF00177 Ribosomal protein S7p/S5e DY328_RS02330 PF00164 Ribosomal protein S12/S23 DY328_RS02340 PF00156 Phosphoribosyl transferase domain DY328_RS02340 PF09182 Bacterial purine repressor, N-terminal DY328_RS02345 PF01966 HD domain DY328_RS02345 PF01336 OB-fold nucleic acid binding domain DY328_RS02350 PF02646 RmuC family DY328_RS02360 PF00834 Ribulose-phosphate 3 epimerase family DY328_RS02365 PF03193 RsgA GTPase DY328_RS02365 PF16745 RsgA N-terminal domain DY328_RS02370 PF08241 Methyltransferase domain DY328_RS02375 PF00398 Ribosomal RNA adenine dimethylase DY328_RS02385 PF13331 Domain of unknown function (DUF4093) DY328_RS02390 PF01026 TatD related DNase DY328_RS02415 PF04914 DltD protein DY328_RS02420 PF00550 Phosphopantetheine attachment site DY328_RS02425 PF03062 MBOAT, membrane-bound O-acyltransferase family DY328_RS02430 PF00501 AMP-binding enzyme DY328_RS02430 PF13193 AMP-binding enzyme C-terminal domain DY328_RS02440 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS02440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS02445 PF00486 Transcriptional regulatory protein, C terminal DY328_RS02445 PF00072 Response regulator receiver domain DY328_RS02450 PF00468 Ribosomal protein L34 DY328_RS02460 PF01609 Transposase DDE domain DY328_RS02460 PF13808 DDE_Tnp_1-associated DY328_RS02465 PF07670 Nucleoside recognition DY328_RS02475 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS02480 PF00571 CBS domain DY328_RS02480 PF00005 ABC transporter DY328_RS02490 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DY328_RS02490 PF09363 XFP C-terminal domain DY328_RS02490 PF09364 XFP N-terminal domain DY328_RS02520 PF03611 PTS system sugar-specific permease component DY328_RS02525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DY328_RS02525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DY328_RS02535 PF00356 Bacterial regulatory proteins, lacI family DY328_RS02540 PF00923 Transaldolase/Fructose-6-phosphate aldolase DY328_RS02545 PF00596 Class II Aldolase and Adducin N-terminal domain DY328_RS02550 PF01261 Xylose isomerase-like TIM barrel DY328_RS02555 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DY328_RS02560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DY328_RS02565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DY328_RS02570 PF03611 PTS system sugar-specific permease component DY328_RS02585 PF00709 Adenylosuccinate synthetase DY328_RS02600 PF04262 Glutamate-cysteine ligase DY328_RS02600 PF18419 ATP-grasp-like domain DY328_RS02600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DY328_RS02615 PF01430 Hsp33 protein DY328_RS02620 PF01207 Dihydrouridine synthase (Dus) DY328_RS02625 PF01712 Deoxynucleoside kinase DY328_RS02635 PF00004 ATPase family associated with various cellular activities (AAA) DY328_RS02635 PF02861 Clp amino terminal domain, pathogenicity island component DY328_RS02635 PF17871 AAA lid domain DY328_RS02635 PF07724 AAA domain (Cdc48 subfamily) DY328_RS02635 PF10431 C-terminal, D2-small domain, of ClpB protein DY328_RS02640 PF05848 CtsR N-terminal HTH domain DY328_RS02640 PF17727 CtsR C-terminal dimerization domain DY328_RS02650 PF00889 Elongation factor TS DY328_RS02655 PF00318 Ribosomal protein S2 DY328_RS02660 PF00578 AhpC/TSA family DY328_RS02665 PF13192 Thioredoxin domain DY328_RS02665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS02675 PF00999 Sodium/hydrogen exchanger family DY328_RS02685 PF02016 LD-carboxypeptidase N-terminal domain DY328_RS02685 PF17676 LD-carboxypeptidase C-terminal domain DY328_RS02690 PF01431 Peptidase family M13 DY328_RS02690 PF05649 Peptidase family M13 DY328_RS02695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DY328_RS02695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DY328_RS02715 PF01327 Polypeptide deformylase DY328_RS02720 PF00356 Bacterial regulatory proteins, lacI family DY328_RS02730 PF03613 PTS system mannose/fructose/sorbose family IID component DY328_RS02735 PF03609 PTS system sorbose-specific iic component DY328_RS02740 PF03830 PTS system sorbose subfamily IIB component DY328_RS02745 PF07470 Glycosyl Hydrolase Family 88 DY328_RS02750 PF03830 PTS system sorbose subfamily IIB component DY328_RS02750 PF03610 PTS system fructose IIA component DY328_RS02800 PF11490 DNA polymerase III polC-type N-terminus II DY328_RS02800 PF07733 Bacterial DNA polymerase III alpha NTPase domain DY328_RS02800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DY328_RS02800 PF02811 PHP domain DY328_RS02800 PF14579 Helix-hairpin-helix motif DY328_RS02800 PF00929 Exonuclease DY328_RS02800 PF14480 DNA polymerase III polC-type N-terminus I DY328_RS02805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DY328_RS02805 PF01476 LysM domain DY328_RS02810 PF03129 Anticodon binding domain DY328_RS02810 PF04073 Aminoacyl-tRNA editing domain DY328_RS02810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DY328_RS02815 PF02163 Peptidase family M50 DY328_RS02815 PF13180 PDZ domain DY328_RS02825 PF01255 Putative undecaprenyl diphosphate synthase DY328_RS02830 PF02699 Preprotein translocase subunit DY328_RS02845 PF00390 Malic enzyme, N-terminal domain DY328_RS02845 PF03949 Malic enzyme, NAD binding domain DY328_RS02850 PF03390 2-hydroxycarboxylate transporter family DY328_RS02855 PF00989 PAS fold DY328_RS02855 PF17203 Single cache domain 3 DY328_RS02855 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DY328_RS02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS02860 PF00072 Response regulator receiver domain DY328_RS02865 PF16363 GDP-mannose 4,6 dehydratase DY328_RS02870 PF00128 Alpha amylase, catalytic domain DY328_RS02875 PF03459 TOBE domain DY328_RS02875 PF17912 MalK OB fold domain DY328_RS02875 PF00005 ABC transporter DY328_RS02880 PF13556 PucR C-terminal helix-turn-helix domain DY328_RS02885 PF01263 Aldose 1-epimerase DY328_RS02890 PF01791 DeoC/LacD family aldolase DY328_RS02895 PF00294 pfkB family carbohydrate kinase DY328_RS02900 PF02502 Ribose/Galactose Isomerase DY328_RS02905 PF02502 Ribose/Galactose Isomerase DY328_RS02910 PF04650 YSIRK type signal peptide DY328_RS02910 PF02973 Sialidase, N-terminal domain DY328_RS02910 PF13088 BNR repeat-like domain DY328_RS02930 PF00455 DeoR C terminal sensor domain DY328_RS02930 PF08220 DeoR-like helix-turn-helix domain DY328_RS02945 PF02580 D-Tyr-tRNA(Tyr) deacylase DY328_RS02950 PF13291 ACT domain DY328_RS02950 PF02824 TGS domain DY328_RS02950 PF04607 Region found in RelA / SpoT proteins DY328_RS02955 PF02872 5'-nucleotidase, C-terminal domain DY328_RS02955 PF00149 Calcineurin-like phosphoesterase DY328_RS02960 PF07972 NrdI Flavodoxin like DY328_RS02965 PF05343 M42 glutamyl aminopeptidase DY328_RS02980 PF00072 Response regulator receiver domain DY328_RS02980 PF12833 Helix-turn-helix domain DY328_RS02990 PF03613 PTS system mannose/fructose/sorbose family IID component DY328_RS02995 PF03609 PTS system sorbose-specific iic component DY328_RS03000 PF03830 PTS system sorbose subfamily IIB component DY328_RS03010 PF01757 Acyltransferase family DY328_RS03010 PF01168 Alanine racemase, N-terminal domain DY328_RS03010 PF00842 Alanine racemase, C-terminal domain DY328_RS03025 PF00005 ABC transporter DY328_RS03025 PF13732 Domain of unknown function (DUF4162) DY328_RS03035 PF00072 Response regulator receiver domain DY328_RS03035 PF04397 LytTr DNA-binding domain DY328_RS03040 PF03372 Endonuclease/Exonuclease/phosphatase family DY328_RS03045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DY328_RS03045 PF00367 phosphotransferase system, EIIB DY328_RS03045 PF02378 Phosphotransferase system, EIIC DY328_RS03050 PF00989 PAS fold DY328_RS03050 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS03050 PF16736 Single Cache-like DY328_RS03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS03055 PF00486 Transcriptional regulatory protein, C terminal DY328_RS03055 PF00072 Response regulator receiver domain DY328_RS03060 PF01895 PhoU domain DY328_RS03065 PF00005 ABC transporter DY328_RS03070 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS03075 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS03080 PF12849 PBP superfamily domain DY328_RS03090 PF04452 RNA methyltransferase DY328_RS03105 PF13411 MerR HTH family regulatory protein DY328_RS03105 PF07739 TipAS antibiotic-recognition domain DY328_RS03115 PF00293 NUDIX domain DY328_RS03130 PF00583 Acetyltransferase (GNAT) family DY328_RS03135 PF16193 AAA C-terminal domain DY328_RS03135 PF12002 MgsA AAA+ ATPase C terminal DY328_RS03135 PF05496 Holliday junction DNA helicase RuvB P-loop domain DY328_RS03150 PF14659 Phage integrase, N-terminal SAM-like domain DY328_RS03150 PF00589 Phage integrase family DY328_RS03215 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DY328_RS03275 PF18652 Adhesin P1 N-terminal domain DY328_RS03275 PF00746 LPXTG cell wall anchor motif DY328_RS03275 PF08363 Glucan-binding protein C DY328_RS03275 PF17998 Cell surface antigen I/II C2 terminal domain DY328_RS03275 PF16364 Cell surface antigen C-terminus DY328_RS03275 PF06696 Streptococcal surface antigen repeat DY328_RS03285 PF00403 Heavy-metal-associated domain DY328_RS03285 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS03285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS03290 PF13411 MerR HTH family regulatory protein DY328_RS03295 PF01566 Natural resistance-associated macrophage protein DY328_RS03305 PF00005 ABC transporter DY328_RS03315 PF04439 Streptomycin adenylyltransferase DY328_RS03345 PF00005 ABC transporter DY328_RS03355 PF01381 Helix-turn-helix DY328_RS03365 PF03819 MazG nucleotide pyrophosphohydrolase domain DY328_RS03370 PF03641 Possible lysine decarboxylase DY328_RS03385 PF07373 CAMP factor (Cfa) DY328_RS03400 PF00465 Iron-containing alcohol dehydrogenase DY328_RS03410 PF02574 Homocysteine S-methyltransferase DY328_RS03410 PF02219 Methylenetetrahydrofolate reductase DY328_RS03415 PF01717 Cobalamin-independent synthase, Catalytic domain DY328_RS03415 PF08267 Cobalamin-independent synthase, N-terminal domain DY328_RS03425 PF03591 AzlC protein DY328_RS03435 PF00082 Subtilase family DY328_RS03435 PF06280 Fn3-like domain DY328_RS03435 PF02225 PA domain DY328_RS03440 PF00072 Response regulator receiver domain DY328_RS03440 PF00486 Transcriptional regulatory protein, C terminal DY328_RS03445 PF00672 HAMP domain DY328_RS03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS03445 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS03455 PF13603 Leucyl-tRNA synthetase, Domain 2 DY328_RS03455 PF09334 tRNA synthetases class I (M) DY328_RS03455 PF08264 Anticodon-binding domain of tRNA DY328_RS03455 PF00133 tRNA synthetases class I (I, L, M and V) DY328_RS03460 PF07690 Major Facilitator Superfamily DY328_RS03465 PF01734 Patatin-like phospholipase DY328_RS03470 PF01501 Glycosyl transferase family 8 DY328_RS03475 PF01501 Glycosyl transferase family 8 DY328_RS03480 PF02357 Transcription termination factor nusG DY328_RS03480 PF00467 KOW motif DY328_RS03485 PF00746 LPXTG cell wall anchor motif DY328_RS03485 PF17573 GA-like domain DY328_RS03485 PF01378 B domain DY328_RS03495 PF00471 Ribosomal protein L33 DY328_RS03500 PF00905 Penicillin binding protein transpeptidase domain DY328_RS03500 PF00912 Transglycosylase DY328_RS03505 PF01479 S4 domain DY328_RS03505 PF00849 RNA pseudouridylate synthase DY328_RS03515 PF01676 Metalloenzyme superfamily DY328_RS03520 PF01791 DeoC/LacD family aldolase DY328_RS03525 PF07670 Nucleoside recognition DY328_RS03525 PF01773 Na+ dependent nucleoside transporter N-terminus DY328_RS03525 PF07662 Na+ dependent nucleoside transporter C-terminus DY328_RS03530 PF01048 Phosphorylase superfamily DY328_RS03545 PF00118 TCP-1/cpn60 chaperonin family DY328_RS03550 PF00166 Chaperonin 10 Kd subunit DY328_RS03555 PF00005 ABC transporter DY328_RS03570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DY328_RS03575 PF03883 Peroxide stress protein YaaA DY328_RS03590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DY328_RS03600 PF13597 Anaerobic ribonucleoside-triphosphate reductase DY328_RS03600 PF03477 ATP cone domain DY328_RS03615 PF06949 Protein of unknown function (DUF1292) DY328_RS03620 PF03652 Holliday junction resolvase DY328_RS03625 PF06135 IreB regulatory phosphoprotein DY328_RS03630 PF03960 ArsC family DY328_RS03635 PF00154 recA bacterial DNA recombination protein DY328_RS03645 PF03352 Methyladenine glycosylase DY328_RS03650 PF07499 RuvA, C-terminal domain DY328_RS03650 PF01330 RuvA N terminal domain DY328_RS03660 PF01119 DNA mismatch repair protein, C-terminal domain DY328_RS03660 PF08676 MutL C terminal dimerisation domain DY328_RS03670 PF00313 'Cold-shock' DNA-binding domain DY328_RS03675 PF05188 MutS domain II DY328_RS03675 PF00488 MutS domain V DY328_RS03675 PF01624 MutS domain I DY328_RS03675 PF05192 MutS domain III DY328_RS03675 PF05190 MutS family domain IV DY328_RS03680 PF02863 Arginine repressor, C-terminal domain DY328_RS03680 PF01316 Arginine repressor, DNA binding domain DY328_RS03685 PF05746 DALR anticodon binding domain DY328_RS03685 PF03485 Arginyl tRNA synthetase N terminal domain DY328_RS03685 PF00750 tRNA synthetases class I (R) DY328_RS03695 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DY328_RS03695 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DY328_RS03700 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DY328_RS03700 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DY328_RS03705 PF00152 tRNA synthetases class II (D, K and N) DY328_RS03705 PF02938 GAD domain DY328_RS03705 PF01336 OB-fold nucleic acid binding domain DY328_RS03710 PF03129 Anticodon binding domain DY328_RS03710 PF13393 Histidyl-tRNA synthetase DY328_RS03715 PF01783 Ribosomal L32p protein family DY328_RS03720 PF00471 Ribosomal protein L33 DY328_RS03730 PF00486 Transcriptional regulatory protein, C terminal DY328_RS03730 PF00072 Response regulator receiver domain DY328_RS03735 PF18719 ArlS sensor domain DY328_RS03735 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS03740 PF03606 C4-dicarboxylate anaerobic carrier DY328_RS03745 PF00696 Amino acid kinase family DY328_RS03750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DY328_RS03750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DY328_RS03755 PF00989 PAS fold DY328_RS03755 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS03760 PF00072 Response regulator receiver domain DY328_RS03760 PF08664 YcbB domain DY328_RS03765 PF00005 ABC transporter DY328_RS03765 PF00571 CBS domain DY328_RS03770 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS03775 PF09924 Uncharacterised conserved protein (DUF2156) DY328_RS03775 PF03706 Lysylphosphatidylglycerol synthase TM region DY328_RS03780 PF00561 alpha/beta hydrolase fold DY328_RS03785 PF06993 Protein of unknown function (DUF1304) DY328_RS03790 PF01061 ABC-2 type transporter DY328_RS03895 PF01381 Helix-turn-helix DY328_RS03900 PF05154 TM2 domain DY328_RS03910 PF00589 Phage integrase family DY328_RS03910 PF14659 Phage integrase, N-terminal SAM-like domain DY328_RS03915 PF00163 Ribosomal protein S4/S9 N-terminal domain DY328_RS03915 PF01479 S4 domain DY328_RS03925 PF03796 DnaB-like helicase C terminal domain DY328_RS03925 PF00772 DnaB-like helicase N terminal domain DY328_RS03930 PF01281 Ribosomal protein L9, N-terminal domain DY328_RS03930 PF03948 Ribosomal protein L9, C-terminal domain DY328_RS03935 PF01368 DHH family DY328_RS03935 PF02272 DHHA1 domain DY328_RS03940 PF01134 Glucose inhibited division protein A DY328_RS03940 PF13932 GidA associated domain DY328_RS03945 PF01914 MarC family integral membrane protein DY328_RS03955 PF03315 Serine dehydratase beta chain DY328_RS03955 PF01842 ACT domain DY328_RS03960 PF03313 Serine dehydratase alpha chain DY328_RS03965 PF06737 Transglycosylase-like domain DY328_RS03970 PF05257 CHAP domain DY328_RS03970 PF01476 LysM domain DY328_RS03975 PF02361 Cobalt transport protein DY328_RS03980 PF00005 ABC transporter DY328_RS03985 PF00005 ABC transporter DY328_RS03990 PF01066 CDP-alcohol phosphatidyltransferase DY328_RS03995 PF00675 Insulinase (Peptidase family M16) DY328_RS03995 PF05193 Peptidase M16 inactive domain DY328_RS04000 PF05193 Peptidase M16 inactive domain DY328_RS04010 PF02463 RecF/RecN/SMC N terminal domain DY328_RS04015 PF06800 Sugar transport protein DY328_RS04025 PF00478 IMP dehydrogenase / GMP reductase domain DY328_RS04025 PF00571 CBS domain DY328_RS04030 PF02863 Arginine repressor, C-terminal domain DY328_RS04030 PF01316 Arginine repressor, DNA binding domain DY328_RS04035 PF13545 Crp-like helix-turn-helix domain DY328_RS04035 PF00027 Cyclic nucleotide-binding domain DY328_RS04050 PF13673 Acetyltransferase (GNAT) domain DY328_RS04055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DY328_RS04055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DY328_RS04060 PF13520 Amino acid permease DY328_RS04065 PF00696 Amino acid kinase family DY328_RS04070 PF00579 tRNA synthetases class I (W and Y) DY328_RS04080 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DY328_RS04080 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DY328_RS04085 PF00005 ABC transporter DY328_RS04085 PF12848 ABC transporter DY328_RS04090 PF09586 Bacterial membrane protein YfhO DY328_RS04110 PF02590 Predicted SPOUT methyltransferase DY328_RS04115 PF13180 PDZ domain DY328_RS04120 PF02195 ParB-like nuclease domain DY328_RS04120 PF17762 HTH domain found in ParB protein DY328_RS04125 PF00308 Bacterial dnaA protein DY328_RS04125 PF08299 Bacterial dnaA protein helix-turn-helix DY328_RS04130 PF02768 DNA polymerase III beta subunit, C-terminal domain DY328_RS04130 PF02767 DNA polymerase III beta subunit, central domain DY328_RS04130 PF00712 DNA polymerase III beta subunit, N-terminal domain DY328_RS04135 PF00781 Diacylglycerol kinase catalytic domain DY328_RS04150 PF01926 50S ribosome-binding GTPase DY328_RS04150 PF06071 Protein of unknown function (DUF933) DY328_RS04155 PF01195 Peptidyl-tRNA hydrolase DY328_RS04160 PF00271 Helicase conserved C-terminal domain DY328_RS04160 PF00270 DEAD/DEAH box helicase DY328_RS04160 PF03461 TRCF domain DY328_RS04160 PF17757 UvrB interaction domain DY328_RS04160 PF02559 CarD-like/TRCF domain DY328_RS04170 PF01479 S4 domain DY328_RS04190 PF01171 PP-loop family DY328_RS04195 PF00156 Phosphoribosyl transferase domain DY328_RS04200 PF00004 ATPase family associated with various cellular activities (AAA) DY328_RS04200 PF17862 AAA+ lid domain DY328_RS04200 PF06480 FtsH Extracellular DY328_RS04200 PF01434 Peptidase family M41 DY328_RS04380 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DY328_RS04380 PF14572 Phosphoribosyl synthetase-associated domain DY328_RS04385 PF00155 Aminotransferase class I and II DY328_RS04390 PF11967 Recombination protein O N terminal DY328_RS04390 PF02565 Recombination protein O C terminal DY328_RS04400 PF02504 Fatty acid synthesis protein DY328_RS04405 PF00550 Phosphopantetheine attachment site DY328_RS04410 PF01259 SAICAR synthetase DY328_RS04415 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DY328_RS04415 PF00586 AIR synthase related protein, N-terminal domain DY328_RS04415 PF02769 AIR synthase related protein, C-terminal domain DY328_RS04420 PF13537 Glutamine amidotransferase domain DY328_RS04420 PF00156 Phosphoribosyl transferase domain DY328_RS04425 PF02769 AIR synthase related protein, C-terminal domain DY328_RS04425 PF00586 AIR synthase related protein, N-terminal domain DY328_RS04430 PF00551 Formyl transferase DY328_RS04440 PF02142 MGS-like domain DY328_RS04440 PF01808 AICARFT/IMPCHase bienzyme DY328_RS04445 PF01551 Peptidase family M23 DY328_RS04445 PF01476 LysM domain DY328_RS04455 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DY328_RS04465 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS04470 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS04485 PF00701 Dihydrodipicolinate synthetase family DY328_RS04490 PF00480 ROK family DY328_RS04495 PF05448 Acetyl xylan esterase (AXE1) DY328_RS04505 PF02844 Phosphoribosylglycinamide synthetase, N domain DY328_RS04505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DY328_RS04505 PF02843 Phosphoribosylglycinamide synthetase, C domain DY328_RS04510 PF00731 AIR carboxylase DY328_RS04515 PF02222 ATP-grasp domain DY328_RS04515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DY328_RS04525 PF00206 Lyase DY328_RS04525 PF10397 Adenylosuccinate lyase C-terminus DY328_RS04535 PF17864 RuvB AAA lid domain DY328_RS04535 PF05496 Holliday junction DNA helicase RuvB P-loop domain DY328_RS04535 PF05491 RuvB C-terminal winged helix domain DY328_RS04540 PF01451 Low molecular weight phosphotyrosine protein phosphatase DY328_RS04550 PF01757 Acyltransferase family DY328_RS04555 PF00171 Aldehyde dehydrogenase family DY328_RS04555 PF00465 Iron-containing alcohol dehydrogenase DY328_RS04560 PF08240 Alcohol dehydrogenase GroES-like domain DY328_RS04560 PF00107 Zinc-binding dehydrogenase DY328_RS04565 PF14821 Threonine synthase N terminus DY328_RS04565 PF00291 Pyridoxal-phosphate dependent enzyme DY328_RS04570 PF01554 MatE DY328_RS04575 PF00338 Ribosomal protein S10p/S20e DY328_RS04580 PF00297 Ribosomal protein L3 DY328_RS04585 PF00573 Ribosomal protein L4/L1 family DY328_RS04590 PF00276 Ribosomal protein L23 DY328_RS04595 PF03947 Ribosomal Proteins L2, C-terminal domain DY328_RS04595 PF00181 Ribosomal Proteins L2, RNA binding domain DY328_RS04600 PF00203 Ribosomal protein S19 DY328_RS04605 PF00237 Ribosomal protein L22p/L17e DY328_RS04610 PF00189 Ribosomal protein S3, C-terminal domain DY328_RS04610 PF07650 KH domain DY328_RS04615 PF00252 Ribosomal protein L16p/L10e DY328_RS04620 PF00831 Ribosomal L29 protein DY328_RS04625 PF00366 Ribosomal protein S17 DY328_RS04630 PF00238 Ribosomal protein L14p/L23e DY328_RS04635 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DY328_RS04635 PF00467 KOW motif DY328_RS04640 PF00673 ribosomal L5P family C-terminus DY328_RS04640 PF00281 Ribosomal protein L5 DY328_RS04645 PF00253 Ribosomal protein S14p/S29e DY328_RS04650 PF00410 Ribosomal protein S8 DY328_RS04655 PF00347 Ribosomal protein L6 DY328_RS04660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DY328_RS04665 PF00333 Ribosomal protein S5, N-terminal domain DY328_RS04665 PF03719 Ribosomal protein S5, C-terminal domain DY328_RS04670 PF00327 Ribosomal protein L30p/L7e DY328_RS04675 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DY328_RS04680 PF00344 SecY translocase DY328_RS04690 PF01176 Translation initiation factor 1A / IF-1 DY328_RS04695 PF00444 Ribosomal protein L36 DY328_RS04700 PF00416 Ribosomal protein S13/S18 DY328_RS04705 PF00411 Ribosomal protein S11 DY328_RS04710 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DY328_RS04710 PF01000 RNA polymerase Rpb3/RpoA insert domain DY328_RS04710 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DY328_RS04715 PF01196 Ribosomal protein L17 DY328_RS04835 PF11208 Protein of unknown function (DUF2992) DY328_RS04850 PF02557 D-alanyl-D-alanine carboxypeptidase DY328_RS04855 PF13457 GW (Gly-Tryp) dipeptide domain DY328_RS04855 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DY328_RS04860 PF01628 HrcA protein C terminal domain DY328_RS04860 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DY328_RS04865 PF01025 GrpE DY328_RS04870 PF00012 Hsp70 protein DY328_RS04875 PF00684 DnaJ central domain DY328_RS04875 PF01556 DnaJ C terminal domain DY328_RS04875 PF00226 DnaJ domain DY328_RS04880 PF00155 Aminotransferase class I and II DY328_RS04880 PF00392 Bacterial regulatory proteins, gntR family DY328_RS04885 PF01416 tRNA pseudouridine synthase DY328_RS04890 PF08543 Phosphomethylpyrimidine kinase DY328_RS04895 PF07155 ECF-type riboflavin transporter, S component DY328_RS04900 PF04260 Protein of unknown function (DUF436) DY328_RS04905 PF00924 Mechanosensitive ion channel DY328_RS04910 PF05697 Bacterial trigger factor protein (TF) DY328_RS04910 PF05698 Bacterial trigger factor protein (TF) C-terminus DY328_RS04910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DY328_RS04915 PF05066 HB1, ASXL, restriction endonuclease HTH domain DY328_RS04920 PF00117 Glutamine amidotransferase class-I DY328_RS04920 PF06418 CTP synthase N-terminus DY328_RS04935 PF00692 dUTPase DY328_RS04940 PF18073 Rubredoxin metal binding domain DY328_RS04945 PF00484 Carbonic anhydrase DY328_RS04950 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS04950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS04955 PF00749 tRNA synthetases class I (E and Q), catalytic domain DY328_RS04960 PF13407 Periplasmic binding protein domain DY328_RS04965 PF02653 Branched-chain amino acid transport system / permease component DY328_RS04970 PF00005 ABC transporter DY328_RS04975 PF05025 RbsD / FucU transport protein family DY328_RS04980 PF00294 pfkB family carbohydrate kinase DY328_RS04985 PF00356 Bacterial regulatory proteins, lacI family DY328_RS04995 PF02687 FtsX-like permease family DY328_RS05000 PF00005 ABC transporter DY328_RS05005 PF00072 Response regulator receiver domain DY328_RS05005 PF00486 Transcriptional regulatory protein, C terminal DY328_RS05010 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS05010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS05015 PF00764 Arginosuccinate synthase DY328_RS05020 PF14698 Argininosuccinate lyase C-terminal DY328_RS05020 PF00206 Lyase DY328_RS05025 PF01116 Fructose-bisphosphate aldolase class-II DY328_RS05030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DY328_RS05030 PF00056 lactate/malate dehydrogenase, NAD binding domain DY328_RS05035 PF00830 Ribosomal L28 family DY328_RS05040 PF03780 Asp23 family, cell envelope-related function DY328_RS05045 PF02734 DAK2 domain DY328_RS05045 PF13684 Dihydroxyacetone kinase family DY328_RS05065 PF00005 ABC transporter DY328_RS05070 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05080 PF02673 Bacitracin resistance protein BacA DY328_RS05085 PF05389 Negative regulator of genetic competence (MecA) DY328_RS05090 PF00953 Glycosyl transferase family 4 DY328_RS05095 PF00005 ABC transporter DY328_RS05100 PF01458 Uncharacterized protein family (UPF0051) DY328_RS05105 PF00266 Aminotransferase class-V DY328_RS05110 PF01592 NifU-like N terminal domain DY328_RS05115 PF01458 Uncharacterized protein family (UPF0051) DY328_RS05120 PF00768 D-alanyl-D-alanine carboxypeptidase DY328_RS05120 PF07943 Penicillin-binding protein 5, C-terminal domain DY328_RS05125 PF07943 Penicillin-binding protein 5, C-terminal domain DY328_RS05125 PF00768 D-alanyl-D-alanine carboxypeptidase DY328_RS05130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DY328_RS05135 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05140 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05140 PF12911 N-terminal TM domain of oligopeptide transport permease C DY328_RS05145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DY328_RS05145 PF00005 ABC transporter DY328_RS05150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DY328_RS05150 PF00005 ABC transporter DY328_RS05180 PF08544 GHMP kinases C terminal DY328_RS05180 PF00288 GHMP kinases N terminal domain DY328_RS05185 PF01047 MarR family DY328_RS05190 PF00005 ABC transporter DY328_RS05195 PF00950 ABC 3 transport family DY328_RS05205 PF01479 S4 domain DY328_RS05205 PF00579 tRNA synthetases class I (W and Y) DY328_RS05210 PF00912 Transglycosylase DY328_RS05210 PF00905 Penicillin binding protein transpeptidase domain DY328_RS05215 PF04560 RNA polymerase Rpb2, domain 7 DY328_RS05215 PF00562 RNA polymerase Rpb2, domain 6 DY328_RS05215 PF10385 RNA polymerase beta subunit external 1 domain DY328_RS05215 PF04565 RNA polymerase Rpb2, domain 3 DY328_RS05215 PF04561 RNA polymerase Rpb2, domain 2 DY328_RS05215 PF04563 RNA polymerase beta subunit DY328_RS05220 PF04998 RNA polymerase Rpb1, domain 5 DY328_RS05220 PF04997 RNA polymerase Rpb1, domain 1 DY328_RS05220 PF00623 RNA polymerase Rpb1, domain 2 DY328_RS05220 PF05000 RNA polymerase Rpb1, domain 4 DY328_RS05220 PF04983 RNA polymerase Rpb1, domain 3 DY328_RS05240 PF00482 Type II secretion system (T2SS), protein F DY328_RS05260 PF00871 Acetokinase family DY328_RS05285 PF03807 NADP oxidoreductase coenzyme F420-dependent DY328_RS05285 PF14748 Pyrroline-5-carboxylate reductase dimerisation DY328_RS05290 PF05343 M42 glutamyl aminopeptidase DY328_RS05305 PF00085 Thioredoxin DY328_RS05310 PF14794 Domain of unknown function (DUF4479) DY328_RS05310 PF01588 Putative tRNA binding domain DY328_RS05320 PF00436 Single-strand binding protein family DY328_RS05325 PF13419 Haloacid dehalogenase-like hydrolase DY328_RS05330 PF06580 Histidine kinase DY328_RS05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS05330 PF07694 5TMR of 5TMR-LYT DY328_RS05335 PF04397 LytTr DNA-binding domain DY328_RS05335 PF00072 Response regulator receiver domain DY328_RS05340 PF03788 LrgA family DY328_RS05345 PF04172 LrgB-like family DY328_RS05355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DY328_RS05360 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05365 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05365 PF12911 N-terminal TM domain of oligopeptide transport permease C DY328_RS05370 PF00005 ABC transporter DY328_RS05370 PF12558 ATP-binding cassette cobalt transporter DY328_RS05375 PF00005 ABC transporter DY328_RS05380 PF02378 Phosphotransferase system, EIIC DY328_RS05380 PF00367 phosphotransferase system, EIIB DY328_RS05385 PF16657 Maltogenic Amylase, C-terminal domain DY328_RS05385 PF00128 Alpha amylase, catalytic domain DY328_RS05390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DY328_RS05395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DY328_RS05400 PF03611 PTS system sugar-specific permease component DY328_RS05405 PF00456 Transketolase, thiamine diphosphate binding domain DY328_RS05410 PF02780 Transketolase, C-terminal domain DY328_RS05410 PF02779 Transketolase, pyrimidine binding domain DY328_RS05410 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DY328_RS05415 PF00970 Oxidoreductase FAD-binding domain DY328_RS05415 PF00111 2Fe-2S iron-sulfur cluster binding domain DY328_RS05415 PF00175 Oxidoreductase NAD-binding domain DY328_RS05420 PF00312 Ribosomal protein S15 DY328_RS05425 PF00575 S1 RNA binding domain DY328_RS05425 PF00013 KH domain DY328_RS05425 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DY328_RS05425 PF01138 3' exoribonuclease family, domain 1 DY328_RS05425 PF03725 3' exoribonuclease family, domain 2 DY328_RS05435 PF00132 Bacterial transferase hexapeptide (six repeats) DY328_RS05435 PF06426 Serine acetyltransferase, N-terminal DY328_RS05445 PF01406 tRNA synthetases class I (C) catalytic domain DY328_RS05445 PF09190 DALR domain DY328_RS05450 PF00636 Ribonuclease III domain DY328_RS05455 PF00588 SpoU rRNA Methylase family DY328_RS05455 PF08032 RNA 2'-O ribose methyltransferase substrate binding DY328_RS05465 PF02645 Uncharacterised protein, DegV family COG1307 DY328_RS05480 PF00572 Ribosomal protein L13 DY328_RS05485 PF00380 Ribosomal protein S9/S16 DY328_RS05490 PF00589 Phage integrase family DY328_RS05490 PF02899 Phage integrase, N-terminal SAM-like domain DY328_RS05510 PF05257 CHAP domain DY328_RS05510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DY328_RS05600 PF01381 Helix-turn-helix DY328_RS05615 PF00145 C-5 cytosine-specific DNA methylase DY328_RS05645 PF00589 Phage integrase family DY328_RS05645 PF02899 Phage integrase, N-terminal SAM-like domain DY328_RS05680 PF02486 Replication initiation factor DY328_RS05690 PF01076 Plasmid recombination enzyme DY328_RS05710 PF06013 Proteins of 100 residues with WXG DY328_RS05755 PF01381 Helix-turn-helix DY328_RS05760 PF07690 Major Facilitator Superfamily DY328_RS05765 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05770 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DY328_RS05775 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS05780 PF00571 CBS domain DY328_RS05780 PF00005 ABC transporter DY328_RS05865 PF00589 Phage integrase family DY328_RS05865 PF14659 Phage integrase, N-terminal SAM-like domain DY328_RS05895 PF00893 Small Multidrug Resistance protein DY328_RS05945 PF13673 Acetyltransferase (GNAT) domain DY328_RS05945 PF13302 Acetyltransferase (GNAT) domain DY328_RS05945 PF03352 Methyladenine glycosylase DY328_RS05945 PF00117 Glutamine amidotransferase class-I DY328_RS05945 PF00958 GMP synthase C terminal domain DY328_RS05960 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DY328_RS05970 PF00440 Bacterial regulatory proteins, tetR family DY328_RS05980 PF00005 ABC transporter DY328_RS05995 PF03551 Transcriptional regulator PadR-like family DY328_RS06005 PF01979 Amidohydrolase family DY328_RS06010 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DY328_RS06015 PF02091 Glycyl-tRNA synthetase alpha subunit DY328_RS06020 PF02525 Flavodoxin-like fold DY328_RS06025 PF02092 Glycyl-tRNA synthetase beta subunit DY328_RS06025 PF05746 DALR anticodon binding domain DY328_RS06030 PF05979 Bacterial protein of unknown function (DUF896) DY328_RS06040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DY328_RS06040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DY328_RS06045 PF01266 FAD dependent oxidoreductase DY328_RS06045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DY328_RS06050 PF00230 Major intrinsic protein DY328_RS06055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS06055 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS06065 PF00456 Transketolase, thiamine diphosphate binding domain DY328_RS06065 PF02780 Transketolase, C-terminal domain DY328_RS06065 PF02779 Transketolase, pyrimidine binding domain DY328_RS06075 PF00005 ABC transporter DY328_RS06085 PF02378 Phosphotransferase system, EIIC DY328_RS06085 PF00367 phosphotransferase system, EIIB DY328_RS06085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DY328_RS06090 PF00696 Amino acid kinase family DY328_RS06095 PF00171 Aldehyde dehydrogenase family DY328_RS06100 PF01795 MraW methylase family DY328_RS06110 PF00905 Penicillin binding protein transpeptidase domain DY328_RS06110 PF03793 PASTA domain DY328_RS06110 PF03717 Penicillin-binding Protein dimerisation domain DY328_RS06115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DY328_RS06115 PF00953 Glycosyl transferase family 4 DY328_RS06120 PF00271 Helicase conserved C-terminal domain DY328_RS06120 PF00270 DEAD/DEAH box helicase DY328_RS06125 PF00497 Bacterial extracellular solute-binding proteins, family 3 DY328_RS06130 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS06135 PF00005 ABC transporter DY328_RS06145 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS06150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DY328_RS06150 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DY328_RS06150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DY328_RS06155 PF02540 NAD synthase DY328_RS06160 PF03051 Peptidase C1-like family DY328_RS06165 PF00912 Transglycosylase DY328_RS06165 PF00905 Penicillin binding protein transpeptidase domain DY328_RS06170 PF03838 Recombination protein U DY328_RS06175 PF06908 YspA SLOG family DY328_RS06185 PF05103 DivIVA protein DY328_RS06195 PF01170 Putative RNA methylase family UPF0020 DY328_RS06195 PF02926 THUMP domain DY328_RS06200 PF18708 MapZ extracellular C-terminal domain 2 DY328_RS06200 PF18041 MapZ extracellular domain 1 DY328_RS06205 PF02664 S-Ribosylhomocysteinase (LuxS) DY328_RS06210 PF01966 HD domain DY328_RS06210 PF12072 Domain of unknown function (DUF3552) DY328_RS06210 PF00013 KH domain DY328_RS06220 PF00005 ABC transporter DY328_RS06235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS06235 PF07730 Histidine kinase DY328_RS06240 PF00072 Response regulator receiver domain DY328_RS06240 PF00196 Bacterial regulatory proteins, luxR family DY328_RS06245 PF06736 Protein of unknown function (DUF1211) DY328_RS06250 PF00625 Guanylate kinase DY328_RS06255 PF01192 RNA polymerase Rpb6 DY328_RS06260 PF17764 3′ DNA-binding domain (3′BD) DY328_RS06260 PF04851 Type III restriction enzyme, res subunit DY328_RS06260 PF18074 Primosomal protein N C-terminal domain DY328_RS06260 PF00271 Helicase conserved C-terminal domain DY328_RS06260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DY328_RS06265 PF02911 Formyl transferase, C-terminal domain DY328_RS06265 PF00551 Formyl transferase DY328_RS06270 PF01189 16S rRNA methyltransferase RsmB/F DY328_RS06270 PF01029 NusB family DY328_RS06280 PF00069 Protein kinase domain DY328_RS06280 PF03793 PASTA domain DY328_RS06290 PF00672 HAMP domain DY328_RS06290 PF07730 Histidine kinase DY328_RS06290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS06295 PF00072 Response regulator receiver domain DY328_RS06295 PF00196 Bacterial regulatory proteins, luxR family DY328_RS06300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DY328_RS06305 PF00575 S1 RNA binding domain DY328_RS06310 PF04055 Radical SAM superfamily DY328_RS06315 PF00455 DeoR C terminal sensor domain DY328_RS06315 PF08220 DeoR-like helix-turn-helix domain DY328_RS06320 PF04198 Putative sugar-binding domain DY328_RS06320 PF13936 Helix-turn-helix domain DY328_RS06325 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DY328_RS06335 PF02378 Phosphotransferase system, EIIC DY328_RS06340 PF02901 Pyruvate formate lyase-like DY328_RS06340 PF01228 Glycine radical DY328_RS06345 PF00923 Transaldolase/Fructose-6-phosphate aldolase DY328_RS06350 PF00465 Iron-containing alcohol dehydrogenase DY328_RS06355 PF00291 Pyridoxal-phosphate dependent enzyme DY328_RS06360 PF01205 Uncharacterized protein family UPF0029 DY328_RS06360 PF09186 Domain of unknown function (DUF1949) DY328_RS06365 PF04851 Type III restriction enzyme, res subunit DY328_RS06365 PF00271 Helicase conserved C-terminal domain DY328_RS06375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DY328_RS06375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DY328_RS06405 PF00696 Amino acid kinase family DY328_RS06405 PF13840 ACT domain DY328_RS06410 PF13419 Haloacid dehalogenase-like hydrolase DY328_RS06420 PF00378 Enoyl-CoA hydratase/isomerase DY328_RS06430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DY328_RS06430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DY328_RS06435 PF00550 Phosphopantetheine attachment site DY328_RS06440 PF03060 Nitronate monooxygenase DY328_RS06445 PF00698 Acyl transferase domain DY328_RS06455 PF00109 Beta-ketoacyl synthase, N-terminal domain DY328_RS06455 PF02801 Beta-ketoacyl synthase, C-terminal domain DY328_RS06460 PF00364 Biotin-requiring enzyme DY328_RS06465 PF07977 FabA-like domain DY328_RS06470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DY328_RS06470 PF00289 Biotin carboxylase, N-terminal domain DY328_RS06470 PF02785 Biotin carboxylase C-terminal domain DY328_RS06475 PF17848 Acetyl-coA carboxylase zinc finger domain DY328_RS06475 PF01039 Carboxyl transferase domain DY328_RS06480 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DY328_RS06490 PF02403 Seryl-tRNA synthetase N-terminal domain DY328_RS06490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DY328_RS06505 PF03613 PTS system mannose/fructose/sorbose family IID component DY328_RS06510 PF03609 PTS system sorbose-specific iic component DY328_RS06515 PF03830 PTS system sorbose subfamily IIB component DY328_RS06515 PF03610 PTS system fructose IIA component DY328_RS06540 PF00860 Permease family DY328_RS06545 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DY328_RS06550 PF13302 Acetyltransferase (GNAT) domain DY328_RS06555 PF03816 Cell envelope-related transcriptional attenuator domain DY328_RS06565 PF01230 HIT domain DY328_RS06580 PF00005 ABC transporter DY328_RS06585 PF05975 Bacterial ABC transporter protein EcsB DY328_RS06595 PF02390 Putative methyltransferase DY328_RS06605 PF02576 RimP N-terminal domain DY328_RS06605 PF17384 RimP C-terminal SH3 domain DY328_RS06610 PF00575 S1 RNA binding domain DY328_RS06610 PF08529 NusA N-terminal domain DY328_RS06610 PF13184 NusA-like KH domain DY328_RS06615 PF04296 Protein of unknown function (DUF448) DY328_RS06620 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DY328_RS06625 PF11987 Translation-initiation factor 2 DY328_RS06625 PF04760 Translation initiation factor IF-2, N-terminal region DY328_RS06625 PF00009 Elongation factor Tu GTP binding domain DY328_RS06630 PF02033 Ribosome-binding factor A DY328_RS06635 PF07859 alpha/beta hydrolase fold DY328_RS06640 PF03965 Penicillinase repressor DY328_RS06645 PF00403 Heavy-metal-associated domain DY328_RS06655 PF03458 UPF0126 domain DY328_RS06665 PF00476 DNA polymerase family A DY328_RS06665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DY328_RS06665 PF01367 5'-3' exonuclease, C-terminal SAM fold DY328_RS06670 PF13380 CoA binding domain DY328_RS06675 PF01475 Ferric uptake regulator family DY328_RS06685 PF00072 Response regulator receiver domain DY328_RS06685 PF00486 Transcriptional regulatory protein, C terminal DY328_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS06690 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS06700 PF01702 Queuine tRNA-ribosyltransferase DY328_RS06710 PF02632 BioY family DY328_RS06715 PF12706 Beta-lactamase superfamily domain DY328_RS06720 PF14437 MafB19-like deaminase DY328_RS06730 PF00342 Phosphoglucose isomerase DY328_RS06735 PF01812 5-formyltetrahydrofolate cyclo-ligase family DY328_RS06740 PF01694 Rhomboid family DY328_RS06745 PF02608 ABC transporter substrate-binding protein PnrA-like DY328_RS06750 PF00483 Nucleotidyl transferase DY328_RS06755 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DY328_RS06755 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DY328_RS06760 PF00825 Ribonuclease P DY328_RS06765 PF02096 60Kd inner membrane protein DY328_RS06815 PF04167 Protein of unknown function (DUF402) DY328_RS06820 PF02631 RecX family DY328_RS06825 PF01938 TRAM domain DY328_RS06825 PF05958 tRNA (Uracil-5-)-methyltransferase DY328_RS06835 PF13673 Acetyltransferase (GNAT) domain DY328_RS06840 PF06280 Fn3-like domain DY328_RS06840 PF02225 PA domain DY328_RS06840 PF00082 Subtilase family DY328_RS06845 PF00535 Glycosyl transferase family 2 DY328_RS06845 PF01501 Glycosyl transferase family 8 DY328_RS06850 PF00268 Ribonucleotide reductase, small chain DY328_RS06855 PF07972 NrdI Flavodoxin like DY328_RS06860 PF02867 Ribonucleotide reductase, barrel domain DY328_RS06860 PF00317 Ribonucleotide reductase, all-alpha domain DY328_RS06860 PF08343 Ribonucleotide reductase N-terminal DY328_RS06885 PF02627 Carboxymuconolactone decarboxylase family DY328_RS06895 PF13411 MerR HTH family regulatory protein DY328_RS06900 PF08240 Alcohol dehydrogenase GroES-like domain DY328_RS06900 PF00107 Zinc-binding dehydrogenase DY328_RS06900 PF13823 Alcohol dehydrogenase GroES-associated DY328_RS06905 PF00248 Aldo/keto reductase family DY328_RS06910 PF01545 Cation efflux family DY328_RS06920 PF12833 Helix-turn-helix domain DY328_RS06925 PF04650 YSIRK type signal peptide DY328_RS06925 PF00746 LPXTG cell wall anchor motif DY328_RS06925 PF17480 AlphaC C-terminal DY328_RS06925 PF08829 Alpha C protein N terminal DY328_RS06960 PF13302 Acetyltransferase (GNAT) domain DY328_RS06970 PF10458 Valyl tRNA synthetase tRNA binding arm DY328_RS06970 PF00133 tRNA synthetases class I (I, L, M and V) DY328_RS06970 PF08264 Anticodon-binding domain of tRNA DY328_RS06975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DY328_RS06975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DY328_RS06985 PF00872 Transposase, Mutator family DY328_RS06990 PF04237 YjbR DY328_RS06995 PF03590 Aspartate-ammonia ligase DY328_RS07020 PF01467 Cytidylyltransferase-like DY328_RS07025 PF13180 PDZ domain DY328_RS07025 PF05362 Lon protease (S16) C-terminal proteolytic domain DY328_RS07035 PF06265 Protein of unknown function (DUF1027) DY328_RS07040 PF04055 Radical SAM superfamily DY328_RS07050 PF00664 ABC transporter transmembrane region DY328_RS07050 PF00005 ABC transporter DY328_RS07055 PF00664 ABC transporter transmembrane region DY328_RS07055 PF00005 ABC transporter DY328_RS07060 PF00117 Glutamine amidotransferase class-I DY328_RS07065 PF02632 BioY family DY328_RS07070 PF04055 Radical SAM superfamily DY328_RS07070 PF06968 Biotin and Thiamin Synthesis associated domain DY328_RS07080 PF02803 Thiolase, C-terminal domain DY328_RS07080 PF00108 Thiolase, N-terminal domain DY328_RS07090 PF00730 HhH-GPD superfamily base excision DNA repair protein DY328_RS07090 PF00633 Helix-hairpin-helix motif DY328_RS07090 PF10576 Iron-sulfur binding domain of endonuclease III DY328_RS07105 PF00480 ROK family DY328_RS07110 PF00581 Rhodanese-like domain DY328_RS07115 PF03144 Elongation factor Tu domain 2 DY328_RS07115 PF00009 Elongation factor Tu GTP binding domain DY328_RS07115 PF00679 Elongation factor G C-terminus DY328_RS07115 PF14492 Elongation Factor G, domain II DY328_RS07125 PF02875 Mur ligase family, glutamate ligase domain DY328_RS07125 PF08245 Mur ligase middle domain DY328_RS07130 PF04101 Glycosyltransferase family 28 C-terminal domain DY328_RS07130 PF03033 Glycosyltransferase family 28 N-terminal domain DY328_RS07135 PF08478 POTRA domain, FtsQ-type DY328_RS07140 PF11983 Membrane-attachment and polymerisation-promoting switch DY328_RS07140 PF02491 SHS2 domain inserted in FTSA DY328_RS07145 PF12327 FtsZ family, C-terminal domain DY328_RS07145 PF00091 Tubulin/FtsZ family, GTPase domain DY328_RS07150 PF01168 Alanine racemase, N-terminal domain DY328_RS07155 PF04472 Cell division protein SepF DY328_RS07160 PF02325 YGGT family DY328_RS07165 PF01479 S4 domain DY328_RS07165 PF17774 Putative RNA-binding domain in YlmH DY328_RS07170 PF05103 DivIVA protein DY328_RS07175 PF00133 tRNA synthetases class I (I, L, M and V) DY328_RS07175 PF08264 Anticodon-binding domain of tRNA DY328_RS07185 PF00293 NUDIX domain DY328_RS07190 PF00004 ATPase family associated with various cellular activities (AAA) DY328_RS07190 PF17871 AAA lid domain DY328_RS07190 PF07724 AAA domain (Cdc48 subfamily) DY328_RS07190 PF10431 C-terminal, D2-small domain, of ClpB protein DY328_RS07200 PF08796 Protein of unknown function (DUF1797) DY328_RS07205 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS07210 PF00005 ABC transporter DY328_RS07215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DY328_RS07215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DY328_RS07215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DY328_RS07215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DY328_RS07220 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DY328_RS07220 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DY328_RS07225 PF01256 Carbohydrate kinase DY328_RS07230 PF02601 Exonuclease VII, large subunit DY328_RS07230 PF13742 OB-fold nucleic acid binding domain DY328_RS07235 PF02609 Exonuclease VII small subunit DY328_RS07240 PF00348 Polyprenyl synthetase DY328_RS07245 PF01479 S4 domain DY328_RS07245 PF01728 FtsJ-like methyltransferase DY328_RS07250 PF01316 Arginine repressor, DNA binding domain DY328_RS07250 PF02863 Arginine repressor, C-terminal domain DY328_RS07255 PF13476 AAA domain DY328_RS07260 PF02645 Uncharacterised protein, DegV family COG1307 DY328_RS07265 PF13472 GDSL-like Lipase/Acylhydrolase family DY328_RS07275 PF00216 Bacterial DNA-binding protein DY328_RS07285 PF01180 Dihydroorotate dehydrogenase DY328_RS07295 PF02388 FemAB family DY328_RS07300 PF02388 FemAB family DY328_RS07310 PF01966 HD domain DY328_RS07320 PF00689 Cation transporting ATPase, C-terminus DY328_RS07320 PF00690 Cation transporter/ATPase, N-terminus DY328_RS07330 PF06874 Firmicute fructose-1,6-bisphosphatase DY328_RS07335 PF08331 Domain of unknown function (DUF1730) DY328_RS07345 PF00005 ABC transporter DY328_RS07350 PF02687 FtsX-like permease family DY328_RS07350 PF18075 FtsX extracellular domain DY328_RS07360 PF00753 Metallo-beta-lactamase superfamily DY328_RS07370 PF13307 Helicase C-terminal domain DY328_RS07370 PF04851 Type III restriction enzyme, res subunit DY328_RS07370 PF00929 Exonuclease DY328_RS07375 PF00155 Aminotransferase class I and II DY328_RS07380 PF00152 tRNA synthetases class II (D, K and N) DY328_RS07380 PF01336 OB-fold nucleic acid binding domain DY328_RS07390 PF01156 Inosine-uridine preferring nucleoside hydrolase DY328_RS07405 PF03668 P-loop ATPase protein family DY328_RS07410 PF01933 Uncharacterised protein family UPF0052 DY328_RS07415 PF02650 WhiA C-terminal HTH domain DY328_RS07415 PF14527 WhiA LAGLIDADG-like domain DY328_RS07415 PF10298 WhiA N-terminal LAGLIDADG-like domain DY328_RS07420 PF03577 Peptidase family C69 DY328_RS07425 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DY328_RS07425 PF01297 Zinc-uptake complex component A periplasmic DY328_RS07430 PF01197 Ribosomal protein L31 DY328_RS07435 PF02272 DHHA1 domain DY328_RS07435 PF01368 DHH family DY328_RS07440 PF00962 Adenosine/AMP deaminase DY328_RS07445 PF00258 Flavodoxin DY328_RS07450 PF00793 DAHP synthetase I family DY328_RS07450 PF01817 Chorismate mutase type II DY328_RS07455 PF00654 Voltage gated chloride channel DY328_RS07465 PF01245 Ribosomal protein L19 DY328_RS07475 PF14659 Phage integrase, N-terminal SAM-like domain DY328_RS07475 PF00589 Phage integrase family DY328_RS07490 PF01381 Helix-turn-helix DY328_RS07490 PF08671 Anti-repressor SinI DY328_RS07495 PF07411 Domain of unknown function (DUF1508) DY328_RS07645 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DY328_RS07775 PF05532 CsbD-like DY328_RS07830 PF00005 ABC transporter DY328_RS07840 PF00072 Response regulator receiver domain DY328_RS07840 PF00486 Transcriptional regulatory protein, C terminal DY328_RS07845 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS07845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS07845 PF00672 HAMP domain DY328_RS07855 PF05532 CsbD-like DY328_RS07865 PF01098 Cell cycle protein DY328_RS07875 PF00204 DNA gyrase B DY328_RS07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS07875 PF00986 DNA gyrase B subunit, carboxyl terminus DY328_RS07875 PF01751 Toprim domain DY328_RS07880 PF06160 Septation ring formation regulator, EzrA DY328_RS07900 PF01609 Transposase DDE domain DY328_RS07900 PF13808 DDE_Tnp_1-associated DY328_RS07905 PF03952 Enolase, N-terminal domain DY328_RS07905 PF00113 Enolase, C-terminal TIM barrel domain DY328_RS07915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DY328_RS07920 PF01202 Shikimate kinase DY328_RS07925 PF03816 Cell envelope-related transcriptional attenuator domain DY328_RS07930 PF05958 tRNA (Uracil-5-)-methyltransferase DY328_RS07950 PF17480 AlphaC C-terminal DY328_RS07950 PF08829 Alpha C protein N terminal DY328_RS07950 PF04650 YSIRK type signal peptide DY328_RS07950 PF08829 Alpha C protein N terminal DY328_RS07950 PF00746 LPXTG cell wall anchor motif DY328_RS07950 PF17480 AlphaC C-terminal DY328_RS07950 PF00746 LPXTG cell wall anchor motif DY328_RS07950 PF04650 YSIRK type signal peptide DY328_RS07975 PF00476 DNA polymerase family A DY328_RS07975 PF01612 3'-5' exonuclease DY328_RS07975 PF01367 5'-3' exonuclease, C-terminal SAM fold DY328_RS07975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DY328_RS08020 PF00438 S-adenosylmethionine synthetase, N-terminal domain DY328_RS08020 PF02772 S-adenosylmethionine synthetase, central domain DY328_RS08020 PF02773 S-adenosylmethionine synthetase, C-terminal domain DY328_RS08035 PF01555 DNA methylase DY328_RS08080 PF04860 Phage portal protein DY328_RS08085 PF00574 Clp protease DY328_RS08150 PF13808 DDE_Tnp_1-associated DY328_RS08150 PF01609 Transposase DDE domain DY328_RS08160 PF05105 Bacteriophage holin family DY328_RS08175 PF13408 Recombinase zinc beta ribbon domain DY328_RS08175 PF07508 Recombinase DY328_RS08180 PF02796 Helix-turn-helix domain of resolvase DY328_RS08180 PF00239 Resolvase, N terminal domain DY328_RS08200 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DY328_RS08215 PF04650 YSIRK type signal peptide DY328_RS08215 PF08829 Alpha C protein N terminal DY328_RS08215 PF17480 AlphaC C-terminal DY328_RS08215 PF00746 LPXTG cell wall anchor motif DY328_RS08305 PF00144 Beta-lactamase DY328_RS08310 PF00005 ABC transporter DY328_RS08345 PF00550 Phosphopantetheine attachment site DY328_RS08350 PF07977 FabA-like domain DY328_RS08355 PF00005 ABC transporter DY328_RS08370 PF08669 Glycine cleavage T-protein C-terminal barrel domain DY328_RS08370 PF01571 Aminomethyltransferase folate-binding domain DY328_RS08375 PF00109 Beta-ketoacyl synthase, N-terminal domain DY328_RS08375 PF02801 Beta-ketoacyl synthase, C-terminal domain DY328_RS08395 PF00746 LPXTG cell wall anchor motif DY328_RS08395 PF16364 Cell surface antigen C-terminus DY328_RS08395 PF18652 Adhesin P1 N-terminal domain DY328_RS08395 PF08363 Glucan-binding protein C DY328_RS08395 PF06696 Streptococcal surface antigen repeat DY328_RS08395 PF17998 Cell surface antigen I/II C2 terminal domain DY328_RS08400 PF06280 Fn3-like domain DY328_RS08400 PF00746 LPXTG cell wall anchor motif DY328_RS08400 PF02225 PA domain DY328_RS08400 PF00082 Subtilase family DY328_RS08410 PF01431 Peptidase family M13 DY328_RS08410 PF05649 Peptidase family M13 DY328_RS08415 PF01431 Peptidase family M13 DY328_RS08415 PF05649 Peptidase family M13 DY328_RS08465 PF00005 ABC transporter DY328_RS08475 PF01223 DNA/RNA non-specific endonuclease DY328_RS08480 PF09335 SNARE associated Golgi protein DY328_RS08485 PF00005 ABC transporter DY328_RS08490 PF03649 Uncharacterised protein family (UPF0014) DY328_RS08500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DY328_RS08500 PF03466 LysR substrate binding domain DY328_RS08510 PF01609 Transposase DDE domain DY328_RS08510 PF13808 DDE_Tnp_1-associated DY328_RS08520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DY328_RS08520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DY328_RS08530 PF00294 pfkB family carbohydrate kinase DY328_RS08535 PF02837 Glycosyl hydrolases family 2, sugar binding domain DY328_RS08535 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DY328_RS08535 PF00703 Glycosyl hydrolases family 2 DY328_RS08540 PF07729 FCD domain DY328_RS08540 PF00392 Bacterial regulatory proteins, gntR family DY328_RS08550 PF01081 KDPG and KHG aldolase DY328_RS08555 PF02614 Glucuronate isomerase DY328_RS08560 PF03786 D-mannonate dehydratase (UxuA) DY328_RS08565 PF00106 short chain dehydrogenase DY328_RS08575 PF00933 Glycosyl hydrolase family 3 N terminal domain DY328_RS08580 PF01321 Creatinase/Prolidase N-terminal domain DY328_RS08580 PF00557 Metallopeptidase family M24 DY328_RS08585 PF00356 Bacterial regulatory proteins, lacI family DY328_RS08590 PF00128 Alpha amylase, catalytic domain DY328_RS08590 PF09154 Domain of unknown function (DUF1939) DY328_RS08595 PF13439 Glycosyltransferase Family 4 DY328_RS08595 PF00534 Glycosyl transferases group 1 DY328_RS08600 PF13439 Glycosyltransferase Family 4 DY328_RS08600 PF00534 Glycosyl transferases group 1 DY328_RS08605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DY328_RS08605 PF03129 Anticodon binding domain DY328_RS08605 PF02824 TGS domain DY328_RS08605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DY328_RS08610 PF00486 Transcriptional regulatory protein, C terminal DY328_RS08610 PF00072 Response regulator receiver domain DY328_RS08620 PF03413 Peptidase propeptide and YPEB domain DY328_RS08625 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS08630 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS08635 PF00497 Bacterial extracellular solute-binding proteins, family 3 DY328_RS08640 PF00005 ABC transporter DY328_RS08645 PF00486 Transcriptional regulatory protein, C terminal DY328_RS08645 PF00072 Response regulator receiver domain DY328_RS08650 PF13426 PAS domain DY328_RS08650 PF00672 HAMP domain DY328_RS08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS08650 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS08655 PF00753 Metallo-beta-lactamase superfamily DY328_RS08660 PF04304 Protein of unknown function (DUF454) DY328_RS08665 PF14622 Ribonuclease-III-like DY328_RS08665 PF00035 Double-stranded RNA binding motif DY328_RS08670 PF02463 RecF/RecN/SMC N terminal domain DY328_RS08670 PF06470 SMC proteins Flexible Hinge Domain DY328_RS08685 PF02881 SRP54-type protein, helical bundle domain DY328_RS08685 PF00448 SRP54-type protein, GTPase domain DY328_RS08690 PF09323 Domain of unknown function (DUF1980) DY328_RS08695 PF03773 Predicted permease DY328_RS08710 PF00575 S1 RNA binding domain DY328_RS08710 PF16921 Tex protein YqgF-like domain DY328_RS08710 PF17674 HHH domain DY328_RS08710 PF09371 Tex-like protein N-terminal domain DY328_RS08715 PF10263 SprT-like family DY328_RS08720 PF04024 PspC domain DY328_RS08730 PF02603 HPr Serine kinase N terminus DY328_RS08730 PF07475 HPr Serine kinase C-terminal domain DY328_RS08735 PF01790 Prolipoprotein diacylglyceryl transferase DY328_RS08745 PF12732 YtxH-like protein DY328_RS08760 PF01136 Peptidase family U32 DY328_RS08760 PF16325 Peptidase family U32 C-terminal domain DY328_RS08765 PF02229 Transcriptional Coactivator p15 (PC4) DY328_RS08775 PF01566 Natural resistance-associated macrophage protein DY328_RS08780 PF01872 RibD C-terminal domain DY328_RS08780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DY328_RS08785 PF00677 Lumazine binding domain DY328_RS08790 PF00925 GTP cyclohydrolase II DY328_RS08790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DY328_RS08795 PF00885 6,7-dimethyl-8-ribityllumazine synthase DY328_RS08800 PF00152 tRNA synthetases class II (D, K and N) DY328_RS08800 PF01336 OB-fold nucleic acid binding domain DY328_RS08815 PF04073 Aminoacyl-tRNA editing domain DY328_RS08820 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DY328_RS08840 PF01432 Peptidase family M3 DY328_RS08840 PF08439 Oligopeptidase F DY328_RS08845 PF00311 Phosphoenolpyruvate carboxylase DY328_RS08850 PF01098 Cell cycle protein DY328_RS08855 PF00009 Elongation factor Tu GTP binding domain DY328_RS08855 PF03144 Elongation factor Tu domain 2 DY328_RS08855 PF03143 Elongation factor Tu C-terminal domain DY328_RS08860 PF00121 Triosephosphate isomerase DY328_RS08865 PF00300 Histidine phosphatase superfamily (branch 1) DY328_RS08870 PF03717 Penicillin-binding Protein dimerisation domain DY328_RS08870 PF00905 Penicillin binding protein transpeptidase domain DY328_RS08875 PF02132 RecR protein DY328_RS08875 PF13662 Toprim domain DY328_RS08880 PF07478 D-ala D-ala ligase C-terminus DY328_RS08880 PF01820 D-ala D-ala ligase N-terminus DY328_RS08885 PF02875 Mur ligase family, glutamate ligase domain DY328_RS08885 PF01225 Mur ligase family, catalytic domain DY328_RS08885 PF08245 Mur ligase middle domain DY328_RS08890 PF07690 Major Facilitator Superfamily DY328_RS08905 PF03144 Elongation factor Tu domain 2 DY328_RS08905 PF00009 Elongation factor Tu GTP binding domain DY328_RS08905 PF16658 Class II release factor RF3, C-terminal domain DY328_RS08910 PF08000 Bacterial PH domain DY328_RS08915 PF00005 ABC transporter DY328_RS08915 PF09383 NIL domain DY328_RS08920 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS08925 PF03180 NLPA lipoprotein DY328_RS08930 PF00271 Helicase conserved C-terminal domain DY328_RS08930 PF00270 DEAD/DEAH box helicase DY328_RS08935 PF01541 GIY-YIG catalytic domain DY328_RS08940 PF05175 Methyltransferase small domain DY328_RS08945 PF01553 Acyltransferase DY328_RS08950 PF10531 SLBB domain DY328_RS08955 PF13567 Domain of unknown function (DUF4131) DY328_RS08955 PF03772 Competence protein DY328_RS08955 PF00753 Metallo-beta-lactamase superfamily DY328_RS08965 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DY328_RS08965 PF00356 Bacterial regulatory proteins, lacI family DY328_RS08970 PF00934 PE family DY328_RS08970 PF07859 alpha/beta hydrolase fold DY328_RS08975 PF01209 ubiE/COQ5 methyltransferase family DY328_RS08985 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DY328_RS08985 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DY328_RS08990 PF00874 PRD domain DY328_RS08990 PF03123 CAT RNA binding domain DY328_RS08995 PF02378 Phosphotransferase system, EIIC DY328_RS08995 PF00367 phosphotransferase system, EIIB DY328_RS08995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DY328_RS09000 PF00232 Glycosyl hydrolase family 1 DY328_RS09005 PF13556 PucR C-terminal helix-turn-helix domain DY328_RS09005 PF05651 Putative sugar diacid recognition DY328_RS09005 PF17853 GGDEF-like domain DY328_RS09010 PF02595 Glycerate kinase family DY328_RS09015 PF02447 GntP family permease DY328_RS09025 PF01047 MarR family DY328_RS09030 PF02547 Queuosine biosynthesis protein DY328_RS09040 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DY328_RS09045 PF13409 Glutathione S-transferase, N-terminal domain DY328_RS09050 PF00849 RNA pseudouridylate synthase DY328_RS09050 PF01479 S4 domain DY328_RS09070 PF08439 Oligopeptidase F DY328_RS09070 PF01432 Peptidase family M3 DY328_RS09080 PF01596 O-methyltransferase DY328_RS09085 PF13145 PPIC-type PPIASE domain DY328_RS09090 PF04525 LURP-one-related DY328_RS09095 PF02272 DHHA1 domain DY328_RS09095 PF01411 tRNA synthetases class II (A) DY328_RS09095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DY328_RS09100 PF04474 Protein of unknown function (DUF554) DY328_RS09105 PF01501 Glycosyl transferase family 8 DY328_RS09105 PF08437 Glycosyl transferase family 8 C-terminal DY328_RS09120 PF01381 Helix-turn-helix DY328_RS09130 PF09515 Thiamine transporter protein (Thia_YuaJ) DY328_RS09135 PF00268 Ribonucleotide reductase, small chain DY328_RS09140 PF00317 Ribonucleotide reductase, all-alpha domain DY328_RS09140 PF08343 Ribonucleotide reductase N-terminal DY328_RS09140 PF02867 Ribonucleotide reductase, barrel domain DY328_RS09145 PF00462 Glutaredoxin DY328_RS09150 PF00381 PTS HPr component phosphorylation site DY328_RS09155 PF02896 PEP-utilising enzyme, TIM barrel domain DY328_RS09155 PF00391 PEP-utilising enzyme, mobile domain DY328_RS09155 PF05524 PEP-utilising enzyme, N-terminal DY328_RS09160 PF00171 Aldehyde dehydrogenase family DY328_RS09165 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DY328_RS09165 PF01522 Polysaccharide deacetylase DY328_RS09170 PF00270 DEAD/DEAH box helicase DY328_RS09170 PF00271 Helicase conserved C-terminal domain DY328_RS09175 PF00485 Phosphoribulokinase / Uridine kinase family DY328_RS09180 PF13185 GAF domain DY328_RS09185 PF12169 DNA polymerase III subunits gamma and tau domain III DY328_RS09195 PF08279 HTH domain DY328_RS09195 PF03099 Biotin/lipoate A/B protein ligase family DY328_RS09195 PF02237 Biotin protein ligase C terminal domain DY328_RS09200 PF00438 S-adenosylmethionine synthetase, N-terminal domain DY328_RS09200 PF02772 S-adenosylmethionine synthetase, central domain DY328_RS09200 PF02773 S-adenosylmethionine synthetase, C-terminal domain DY328_RS09210 PF08764 Staphylococcus aureus coagulase DY328_RS09210 PF04022 Staphylocoagulase repeat DY328_RS09225 PF09819 ABC-type cobalt transport system, permease component DY328_RS09230 PF00005 ABC transporter DY328_RS09240 PF03070 TENA/THI-4/PQQC family DY328_RS09245 PF08543 Phosphomethylpyrimidine kinase DY328_RS09250 PF02110 Hydroxyethylthiazole kinase family DY328_RS09255 PF02581 Thiamine monophosphate synthase DY328_RS09260 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DY328_RS09270 PF00392 Bacterial regulatory proteins, gntR family DY328_RS09270 PF07085 DRTGG domain DY328_RS09270 PF00571 CBS domain DY328_RS09270 PF03061 Thioesterase superfamily DY328_RS09275 PF00557 Metallopeptidase family M24 DY328_RS09285 PF04138 GtrA-like protein DY328_RS09290 PF06177 QueT transporter DY328_RS09295 PF12826 Helix-hairpin-helix motif DY328_RS09295 PF00533 BRCA1 C Terminus (BRCT) domain DY328_RS09295 PF03120 NAD-dependent DNA ligase OB-fold domain DY328_RS09295 PF01653 NAD-dependent DNA ligase adenylation domain DY328_RS09295 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DY328_RS09300 PF00781 Diacylglycerol kinase catalytic domain DY328_RS09305 PF17999 Pullulanase N1-terminal domain DY328_RS09305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DY328_RS09305 PF00128 Alpha amylase, catalytic domain DY328_RS09310 PF00128 Alpha amylase, catalytic domain DY328_RS09310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DY328_RS09310 PF02806 Alpha amylase, C-terminal all-beta domain DY328_RS09315 PF00483 Nucleotidyl transferase DY328_RS09315 PF00132 Bacterial transferase hexapeptide (six repeats) DY328_RS09320 PF00483 Nucleotidyl transferase DY328_RS09325 PF00534 Glycosyl transferases group 1 DY328_RS09325 PF08323 Starch synthase catalytic domain DY328_RS09330 PF00137 ATP synthase subunit C DY328_RS09335 PF00119 ATP synthase A chain DY328_RS09340 PF00430 ATP synthase B/B' CF(0) DY328_RS09345 PF00213 ATP synthase delta (OSCP) subunit DY328_RS09350 PF02874 ATP synthase alpha/beta family, beta-barrel domain DY328_RS09350 PF00306 ATP synthase alpha/beta chain, C terminal domain DY328_RS09350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DY328_RS09355 PF00231 ATP synthase DY328_RS09360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DY328_RS09360 PF02874 ATP synthase alpha/beta family, beta-barrel domain DY328_RS09365 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DY328_RS09365 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DY328_RS09375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DY328_RS09385 PF01223 DNA/RNA non-specific endonuclease DY328_RS09390 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DY328_RS09390 PF01409 tRNA synthetases class II core domain (F) DY328_RS09395 PF13673 Acetyltransferase (GNAT) domain DY328_RS09400 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DY328_RS09400 PF01588 Putative tRNA binding domain DY328_RS09400 PF03147 Ferredoxin-fold anticodon binding domain DY328_RS09400 PF03484 tRNA synthetase B5 domain DY328_RS09400 PF03483 B3/4 domain DY328_RS09405 PF04228 Putative neutral zinc metallopeptidase DY328_RS09410 PF12705 PD-(D/E)XK nuclease superfamily DY328_RS09415 PF13361 UvrD-like helicase C-terminal domain DY328_RS09415 PF12705 PD-(D/E)XK nuclease superfamily DY328_RS09415 PF00580 UvrD/REP helicase N-terminal domain DY328_RS09425 PF12631 MnmE helical domain DY328_RS09425 PF01926 50S ribosome-binding GTPase DY328_RS09425 PF10396 GTP-binding protein TrmE N-terminus DY328_RS09430 PF00005 ABC transporter DY328_RS09430 PF12848 ABC transporter DY328_RS09430 PF16326 ABC transporter C-terminal domain DY328_RS09435 PF00676 Dehydrogenase E1 component DY328_RS09440 PF02780 Transketolase, C-terminal domain DY328_RS09440 PF00364 Biotin-requiring enzyme DY328_RS09440 PF02779 Transketolase, pyrimidine binding domain DY328_RS09445 PF02817 e3 binding domain DY328_RS09445 PF00364 Biotin-requiring enzyme DY328_RS09445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DY328_RS09450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS09450 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS09455 PF03099 Biotin/lipoate A/B protein ligase family DY328_RS09455 PF10437 Bacterial lipoate protein ligase C-terminus DY328_RS09460 PF07685 CobB/CobQ-like glutamine amidotransferase domain DY328_RS09465 PF08245 Mur ligase middle domain DY328_RS09465 PF08353 Domain of unknown function (DUF1727) DY328_RS09470 PF02457 DisA bacterial checkpoint controller nucleotide-binding DY328_RS09480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DY328_RS09480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DY328_RS09480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DY328_RS09480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DY328_RS09495 PF04055 Radical SAM superfamily DY328_RS09495 PF06969 HemN C-terminal domain DY328_RS09505 PF13344 Haloacid dehalogenase-like hydrolase DY328_RS09515 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 DY328_RS09515 PF13395 HNH endonuclease DY328_RS09515 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 DY328_RS09515 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 DY328_RS09520 PF01867 CRISPR associated protein Cas1 DY328_RS09525 PF09827 CRISPR associated protein Cas2 DY328_RS09530 PF09711 CRISPR-associated protein (Cas_Csn2) DY328_RS09540 PF00334 Nucleoside diphosphate kinase DY328_RS09545 PF00009 Elongation factor Tu GTP binding domain DY328_RS09545 PF03144 Elongation factor Tu domain 2 DY328_RS09545 PF06421 GTP-binding protein LepA C-terminus DY328_RS09545 PF00679 Elongation factor G C-terminus DY328_RS09555 PF13808 DDE_Tnp_1-associated DY328_RS09555 PF01609 Transposase DDE domain DY328_RS09565 PF01966 HD domain DY328_RS09570 PF13673 Acetyltransferase (GNAT) domain DY328_RS09575 PF01641 SelR domain DY328_RS09580 PF00690 Cation transporter/ATPase, N-terminus DY328_RS09580 PF00689 Cation transporting ATPase, C-terminus DY328_RS09590 PF00132 Bacterial transferase hexapeptide (six repeats) DY328_RS09605 PF00589 Phage integrase family DY328_RS09605 PF02920 DNA binding domain of tn916 integrase DY328_RS09610 PF09035 Excisionase from transposon Tn916 DY328_RS09645 PF03764 Elongation factor G, domain IV DY328_RS09645 PF14492 Elongation Factor G, domain II DY328_RS09645 PF00009 Elongation factor Tu GTP binding domain DY328_RS09645 PF00679 Elongation factor G C-terminus DY328_RS09665 PF00877 NlpC/P60 family DY328_RS09695 PF18106 Rolling Circle replication initiation protein N-terminal domain DY328_RS09695 PF02486 Replication initiation factor DY328_RS09730 PF00005 ABC transporter DY328_RS09735 PF00392 Bacterial regulatory proteins, gntR family DY328_RS09740 PF07733 Bacterial DNA polymerase III alpha NTPase domain DY328_RS09740 PF02811 PHP domain DY328_RS09740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DY328_RS09740 PF01336 OB-fold nucleic acid binding domain DY328_RS09740 PF14579 Helix-hairpin-helix motif DY328_RS09745 PF00365 Phosphofructokinase DY328_RS09750 PF02887 Pyruvate kinase, alpha/beta domain DY328_RS09750 PF00224 Pyruvate kinase, barrel domain DY328_RS09755 PF10502 Signal peptidase, peptidase S26 DY328_RS09765 PF01380 SIS domain DY328_RS09770 PF01609 Transposase DDE domain DY328_RS09770 PF13808 DDE_Tnp_1-associated DY328_RS09775 PF08274 PhnA Zinc-Ribbon DY328_RS09775 PF03831 PhnA domain DY328_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS09785 PF00005 ABC transporter DY328_RS09795 PF01649 Ribosomal protein S20 DY328_RS09800 PF00485 Phosphoribulokinase / Uridine kinase family DY328_RS09805 PF05175 Methyltransferase small domain DY328_RS09810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DY328_RS09815 PF02608 ABC transporter substrate-binding protein PnrA-like DY328_RS09820 PF00005 ABC transporter DY328_RS09825 PF02653 Branched-chain amino acid transport system / permease component DY328_RS09830 PF02653 Branched-chain amino acid transport system / permease component DY328_RS09835 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS09835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS09840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DY328_RS09840 PF00056 lactate/malate dehydrogenase, NAD binding domain DY328_RS09845 PF00521 DNA gyrase/topoisomerase IV, subunit A DY328_RS09845 PF03989 DNA gyrase C-terminal domain, beta-propeller DY328_RS09850 PF04203 Sortase domain DY328_RS09855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DY328_RS09865 PF00999 Sodium/hydrogen exchanger family DY328_RS09875 PF00117 Glutamine amidotransferase class-I DY328_RS09875 PF00958 GMP synthase C terminal domain DY328_RS09875 PF02540 NAD synthase DY328_RS09880 PF00392 Bacterial regulatory proteins, gntR family DY328_RS09880 PF07702 UTRA domain DY328_RS09885 PF01134 Glucose inhibited division protein A DY328_RS09895 PF03180 NLPA lipoprotein DY328_RS09905 PF03572 Peptidase family S41 DY328_RS09910 PF00005 ABC transporter DY328_RS09920 PF00072 Response regulator receiver domain DY328_RS09920 PF00486 Transcriptional regulatory protein, C terminal DY328_RS09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS09930 PF13495 Phage integrase, N-terminal SAM-like domain DY328_RS09930 PF00589 Phage integrase family DY328_RS09935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DY328_RS09950 PF02978 Signal peptide binding domain DY328_RS09950 PF02881 SRP54-type protein, helical bundle domain DY328_RS09950 PF00448 SRP54-type protein, GTPase domain DY328_RS09955 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DY328_RS09960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS09960 PF00512 His Kinase A (phospho-acceptor) domain DY328_RS09965 PF00486 Transcriptional regulatory protein, C terminal DY328_RS09965 PF00072 Response regulator receiver domain DY328_RS09970 PF01433 Peptidase family M1 domain DY328_RS09970 PF11838 ERAP1-like C-terminal domain DY328_RS09975 PF01895 PhoU domain DY328_RS09980 PF00005 ABC transporter DY328_RS09985 PF00005 ABC transporter DY328_RS09990 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS09995 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS10000 PF12849 PBP superfamily domain DY328_RS10005 PF01189 16S rRNA methyltransferase RsmB/F DY328_RS10005 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DY328_RS10005 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DY328_RS10010 PF00459 Inositol monophosphatase family DY328_RS10015 PF05256 Uncharacterised protein family (UPF0223) DY328_RS10020 PF03960 ArsC family DY328_RS10025 PF01687 Riboflavin kinase DY328_RS10025 PF06574 FAD synthetase DY328_RS10030 PF16198 tRNA pseudouridylate synthase B C-terminal domain DY328_RS10030 PF01509 TruB family pseudouridylate synthase (N terminal domain) DY328_RS10060 PF00005 ABC transporter DY328_RS10065 PF01131 DNA topoisomerase DY328_RS10065 PF01396 Topoisomerase DNA binding C4 zinc finger DY328_RS10065 PF01751 Toprim domain DY328_RS10070 PF02481 DNA recombination-mediator protein A DY328_RS10070 PF18255 DNA processing protein A sterile alpha motif domain DY328_RS10075 PF01497 Periplasmic binding protein DY328_RS10080 PF00005 ABC transporter DY328_RS10085 PF01032 FecCD transport family DY328_RS10090 PF01032 FecCD transport family DY328_RS10095 PF14602 Hexapeptide repeat of succinyl-transferase DY328_RS10095 PF12464 Maltose acetyltransferase DY328_RS10100 PF01351 Ribonuclease HII DY328_RS10105 PF01926 50S ribosome-binding GTPase DY328_RS10110 PF03734 L,D-transpeptidase catalytic domain DY328_RS10115 PF02554 Carbon starvation protein CstA DY328_RS10120 PF00072 Response regulator receiver domain DY328_RS10120 PF04397 LytTr DNA-binding domain DY328_RS10125 PF13492 GAF domain DY328_RS10125 PF06580 Histidine kinase DY328_RS10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS10125 PF07694 5TMR of 5TMR-LYT DY328_RS10180 PF01979 Amidohydrolase family DY328_RS10185 PF00156 Phosphoribosyl transferase domain DY328_RS10190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DY328_RS10200 PF00005 ABC transporter DY328_RS10200 PF12848 ABC transporter DY328_RS10210 PF01118 Semialdehyde dehydrogenase, NAD binding domain DY328_RS10210 PF02774 Semialdehyde dehydrogenase, dimerisation domain DY328_RS10225 PF13091 PLD-like domain DY328_RS10230 PF01268 Formate--tetrahydrofolate ligase DY328_RS10235 PF03099 Biotin/lipoate A/B protein ligase family DY328_RS10235 PF10437 Bacterial lipoate protein ligase C-terminus DY328_RS10245 PF01661 Macro domain DY328_RS10250 PF01597 Glycine cleavage H-protein DY328_RS10260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DY328_RS10265 PF03099 Biotin/lipoate A/B protein ligase family DY328_RS10275 PF02441 Flavoprotein DY328_RS10280 PF12822 ECF transporter, substrate-specific component DY328_RS10285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DY328_RS10285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DY328_RS10285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DY328_RS10285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DY328_RS10305 PF00005 ABC transporter DY328_RS10305 PF00664 ABC transporter transmembrane region DY328_RS10310 PF00005 ABC transporter DY328_RS10310 PF00664 ABC transporter transmembrane region DY328_RS10325 PF00464 Serine hydroxymethyltransferase DY328_RS10335 PF05175 Methyltransferase small domain DY328_RS10340 PF00472 RF-1 domain DY328_RS10340 PF03462 PCRF domain DY328_RS10345 PF00265 Thymidine kinase DY328_RS10350 PF01361 Tautomerase enzyme DY328_RS10360 PF02424 ApbE family DY328_RS10365 PF03358 NADPH-dependent FMN reductase DY328_RS10365 PF00890 FAD binding domain DY328_RS10365 PF04205 FMN-binding domain DY328_RS10370 PF04205 FMN-binding domain DY328_RS10370 PF00890 FAD binding domain DY328_RS10370 PF03358 NADPH-dependent FMN reductase DY328_RS10380 PF00860 Permease family DY328_RS10385 PF00156 Phosphoribosyl transferase domain DY328_RS10390 PF00478 IMP dehydrogenase / GMP reductase domain DY328_RS10395 PF07690 Major Facilitator Superfamily DY328_RS10405 PF02705 K+ potassium transporter DY328_RS10410 PF00106 short chain dehydrogenase DY328_RS10415 PF01515 Phosphate acetyl/butaryl transferase DY328_RS10420 PF00849 RNA pseudouridylate synthase DY328_RS10425 PF01513 ATP-NAD kinase DY328_RS10430 PF04607 Region found in RelA / SpoT proteins DY328_RS10440 PF14572 Phosphoribosyl synthetase-associated domain DY328_RS10440 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DY328_RS10445 PF00266 Aminotransferase class-V DY328_RS10455 PF06971 Putative DNA-binding protein N-terminus DY328_RS10455 PF02629 CoA binding domain DY328_RS10460 PF04002 RadC-like JAB domain DY328_RS10465 PF01594 AI-2E family transporter DY328_RS10490 PF12852 Cupin DY328_RS10490 PF12833 Helix-turn-helix domain DY328_RS10495 PF00654 Voltage gated chloride channel DY328_RS10500 PF13416 Bacterial extracellular solute-binding protein DY328_RS10505 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS10510 PF00528 Binding-protein-dependent transport system inner membrane component DY328_RS10515 PF00005 ABC transporter DY328_RS10515 PF08402 TOBE domain DY328_RS10520 PF01565 FAD binding domain DY328_RS10520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DY328_RS10525 PF01609 Transposase DDE domain DY328_RS10525 PF13808 DDE_Tnp_1-associated DY328_RS10530 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DY328_RS10535 PF02152 Dihydroneopterin aldolase DY328_RS10540 PF00809 Pterin binding enzyme DY328_RS10545 PF01227 GTP cyclohydrolase I DY328_RS10550 PF02875 Mur ligase family, glutamate ligase domain DY328_RS10550 PF08245 Mur ligase middle domain DY328_RS10555 PF00892 EamA-like transporter family DY328_RS10560 PF08544 GHMP kinases C terminal DY328_RS10560 PF00288 GHMP kinases N terminal domain DY328_RS10565 PF03447 Homoserine dehydrogenase, NAD binding domain DY328_RS10565 PF00742 Homoserine dehydrogenase DY328_RS10570 PF01522 Polysaccharide deacetylase DY328_RS10575 PF02028 BCCT, betaine/carnitine/choline family transporter DY328_RS10585 PF00171 Aldehyde dehydrogenase family DY328_RS10590 PF03601 Conserved hypothetical protein 698 DY328_RS10615 PF08534 Redoxin DY328_RS10635 PF03780 Asp23 family, cell envelope-related function DY328_RS10640 PF05532 CsbD-like DY328_RS10645 PF03780 Asp23 family, cell envelope-related function DY328_RS10670 PF00580 UvrD/REP helicase N-terminal domain DY328_RS10670 PF13361 UvrD-like helicase C-terminal domain DY328_RS10680 PF00860 Permease family DY328_RS10685 PF01235 Sodium:alanine symporter family DY328_RS10690 PF16916 Dimerisation domain of Zinc Transporter DY328_RS10690 PF01545 Cation efflux family DY328_RS10695 PF03788 LrgA family DY328_RS10700 PF04172 LrgB-like family DY328_RS10715 PF00575 S1 RNA binding domain DY328_RS10735 PF01063 Amino-transferase class IV DY328_RS10740 PF03989 DNA gyrase C-terminal domain, beta-propeller DY328_RS10740 PF00521 DNA gyrase/topoisomerase IV, subunit A DY328_RS10745 PF00204 DNA gyrase B DY328_RS10745 PF00986 DNA gyrase B subunit, carboxyl terminus DY328_RS10745 PF01751 Toprim domain DY328_RS10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DY328_RS10750 PF02660 Glycerol-3-phosphate acyltransferase DY328_RS10755 PF03167 Uracil DNA glycosylase superfamily DY328_RS10765 PF02348 Cytidylyltransferase DY328_RS10765 PF13472 GDSL-like Lipase/Acylhydrolase family DY328_RS10775 PF02350 UDP-N-acetylglucosamine 2-epimerase DY328_RS10780 PF03102 NeuB family DY328_RS10780 PF08666 SAF domain DY328_RS10785 PF01943 Polysaccharide biosynthesis protein DY328_RS10795 PF01501 Glycosyl transferase family 8 DY328_RS10795 PF00535 Glycosyl transferase family 2 DY328_RS10800 PF01501 Glycosyl transferase family 8 DY328_RS10800 PF00535 Glycosyl transferase family 2 DY328_RS10815 PF04101 Glycosyltransferase family 28 C-terminal domain DY328_RS10815 PF03033 Glycosyltransferase family 28 N-terminal domain DY328_RS10820 PF02397 Bacterial sugar transferase DY328_RS10825 PF13614 AAA domain DY328_RS10830 PF02706 Chain length determinant protein DY328_RS10840 PF03816 Cell envelope-related transcriptional attenuator domain DY328_RS10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DY328_RS10845 PF03466 LysR substrate binding domain DY328_RS10855 PF01048 Phosphorylase superfamily DY328_RS10860 PF00654 Voltage gated chloride channel DY328_RS10865 PF01048 Phosphorylase superfamily DY328_RS10870 PF03960 ArsC family DY328_RS10875 PF01676 Metalloenzyme superfamily DY328_RS10880 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DY328_RS10890 PF00756 Putative esterase DY328_RS10895 PF17770 Ribonuclease J C-terminal domain DY328_RS10895 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DY328_RS10895 PF00753 Metallo-beta-lactamase superfamily DY328_RS10900 PF13808 DDE_Tnp_1-associated DY328_RS10900 PF01609 Transposase DDE domain DY328_RS10905 PF00005 ABC transporter DY328_RS10905 PF08402 TOBE domain DY328_RS10920 PF05670 NFACT protein RNA binding domain DY328_RS10925 PF03306 Alpha-acetolactate decarboxylase DY328_RS10930 PF00205 Thiamine pyrophosphate enzyme, central domain DY328_RS10930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DY328_RS10930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DY328_RS10940 PF01594 AI-2E family transporter DY328_RS10950 PF00293 NUDIX domain DY328_RS10960 PF01609 Transposase DDE domain DY328_RS10960 PF13808 DDE_Tnp_1-associated DY328_RS10970 PF16363 GDP-mannose 4,6 dehydratase DY328_RS10975 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DY328_RS10980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DY328_RS10985 PF00483 Nucleotidyl transferase DY328_RS10990 PF01266 FAD dependent oxidoreductase DY328_RS10995 PF01784 NIF3 (NGG1p interacting factor 3) DY328_RS11000 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DY328_RS11010 PF00156 Phosphoribosyl transferase domain DY328_RS11020 PF13808 DDE_Tnp_1-associated DY328_RS11020 PF01609 Transposase DDE domain DY328_RS11035 PF01368 DHH family DY328_RS11035 PF02272 DHHA1 domain DY328_RS11035 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DY328_RS11035 PF17768 RecJ OB domain DY328_RS11040 PF00106 short chain dehydrogenase DY328_RS11045 PF00753 Metallo-beta-lactamase superfamily DY328_RS11045 PF12706 Beta-lactamase superfamily domain DY328_RS11055 PF13167 GTP-binding GTPase N-terminal DY328_RS11055 PF16360 GTP-binding GTPase Middle Region DY328_RS11055 PF01926 50S ribosome-binding GTPase DY328_RS11075 PF03714 Bacterial pullanase-associated domain DY328_RS11075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DY328_RS11075 PF00128 Alpha amylase, catalytic domain DY328_RS11085 PF03167 Uracil DNA glycosylase superfamily DY328_RS11090 PF01546 Peptidase family M20/M25/M40 DY328_RS11105 PF08459 UvrC Helix-hairpin-helix N-terminal DY328_RS11105 PF01541 GIY-YIG catalytic domain DY328_RS11105 PF02151 UvrB/uvrC motif DY328_RS11110 PF02677 Epoxyqueuosine reductase QueH DY328_RS11115 PF01554 MatE DY328_RS11160 PF01297 Zinc-uptake complex component A periplasmic DY328_RS11165 PF01609 Transposase DDE domain DY328_RS11165 PF13808 DDE_Tnp_1-associated DY328_RS11170 PF00082 Subtilase family DY328_RS11170 PF02225 PA domain DY328_RS11170 PF06280 Fn3-like domain DY328_RS11185 PF07733 Bacterial DNA polymerase III alpha NTPase domain DY328_RS11185 PF11490 DNA polymerase III polC-type N-terminus II DY328_RS11185 PF00929 Exonuclease DY328_RS11185 PF02811 PHP domain DY328_RS11185 PF14579 Helix-hairpin-helix motif DY328_RS11185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DY328_RS11195 PF13495 Phage integrase, N-terminal SAM-like domain DY328_RS11195 PF00589 Phage integrase family DY328_RS11205 PF01381 Helix-turn-helix DY328_RS11210 PF03432 Relaxase/Mobilisation nuclease domain DY328_RS11230 PF00403 Heavy-metal-associated domain DY328_RS11235 PF01022 Bacterial regulatory protein, arsR family DY328_RS11260 PF00403 Heavy-metal-associated domain DY328_RS11270 PF03965 Penicillinase repressor DY328_RS11280 PF01022 Bacterial regulatory protein, arsR family DY328_RS11290 PF00239 Resolvase, N terminal domain DY328_RS11290 PF02796 Helix-turn-helix domain of resolvase DY328_RS11300 PF05257 CHAP domain DY328_RS11300 PF08460 Bacterial SH3 domain DY328_RS11300 PF01520 N-acetylmuramoyl-L-alanine amidase DY328_RS11305 PF05105 Bacteriophage holin family DY328_RS11320 PF01022 Bacterial regulatory protein, arsR family DY328_RS11325 PF00403 Heavy-metal-associated domain DY328_RS11345 PF01061 ABC-2 type transporter DY328_RS11350 PF00005 ABC transporter DY328_RS11360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DY328_RS11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase DY328_RS11370 PF02374 Anion-transporting ATPase DY328_RS11375 PF01022 Bacterial regulatory protein, arsR family DY328_RS11380 PF06953 Arsenical resistance operon trans-acting repressor ArsD DY328_RS11385 PF01022 Bacterial regulatory protein, arsR family DY328_RS11390 PF13610 DDE domain DY328_RS11450 PF08363 Glucan-binding protein C DY328_RS11450 PF08363 Glucan-binding protein C DY328_RS11450 PF16364 Cell surface antigen C-terminus DY328_RS11450 PF17998 Cell surface antigen I/II C2 terminal domain DY328_RS11450 PF18652 Adhesin P1 N-terminal domain DY328_RS11450 PF16364 Cell surface antigen C-terminus DY328_RS11450 PF06696 Streptococcal surface antigen repeat DY328_RS11450 PF17998 Cell surface antigen I/II C2 terminal domain DY328_RS11450 PF18652 Adhesin P1 N-terminal domain DY328_RS11450 PF06696 Streptococcal surface antigen repeat DY328_RS11525 PF00145 C-5 cytosine-specific DNA methylase DY328_RS11545 PF00542 Ribosomal protein L7/L12 C-terminal domain DY328_RS11545 PF16320 Ribosomal protein L7/L12 dimerisation domain DY328_RS11550 PF00466 Ribosomal protein L10 DY328_RS11555 PF00004 ATPase family associated with various cellular activities (AAA) DY328_RS11555 PF07724 AAA domain (Cdc48 subfamily) DY328_RS11555 PF17871 AAA lid domain DY328_RS11555 PF10431 C-terminal, D2-small domain, of ClpB protein DY328_RS11595 PF01926 50S ribosome-binding GTPase DY328_RS11600 PF07724 AAA domain (Cdc48 subfamily) DY328_RS11600 PF06689 ClpX C4-type zinc finger DY328_RS11600 PF10431 C-terminal, D2-small domain, of ClpB protein DY328_RS11610 PF00186 Dihydrofolate reductase DY328_RS11615 PF00303 Thymidylate synthase DY328_RS11620 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DY328_RS11620 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DY328_RS11625 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DY328_RS11635 PF03006 Haemolysin-III related DY328_RS11640 PF00781 Diacylglycerol kinase catalytic domain DY328_RS11655 PF01070 FMN-dependent dehydrogenase DY328_RS11660 PF00288 GHMP kinases N terminal domain DY328_RS11660 PF08544 GHMP kinases C terminal