DK43_RS00030	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00040	SM00977	TilS substrate C-terminal domain
DK43_RS00055	SM00363	S4 RNA-binding domain
DK43_RS00060	SM00487	DEAD-like helicases superfamily
DK43_RS00060	SM00490	helicase superfamily c-terminal domain
DK43_RS00060	SM00982	DK43_RS00060
DK43_RS00060	SM01058	CarD-like/TRCF domain
DK43_RS00085	SM00480	DNA polymerase III beta subunit
DK43_RS00090	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00090	SM00760	Bacterial dnaA protein helix-turn-helix domain
DK43_RS00095	SM00470	ParB-like nuclease domain
DK43_RS00100	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
DK43_RS00125	SM00448	cheY-homologous receiver domain
DK43_RS00125	SM00850	LytTr DNA-binding domain
DK43_RS00150	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00175	SM00116	Domain in cystathionine beta-synthase and other proteins.
DK43_RS00175	SM01240	DK43_RS00175
DK43_RS00210	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00215	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00225	SM00257	Lysin motif
DK43_RS00245	SM00257	Lysin motif
DK43_RS00255	SM01228	DK43_RS00255
DK43_RS00285	SM00363	S4 RNA-binding domain
DK43_RS00285	SM01390	DK43_RS00285
DK43_RS00430	SM00255	Toll - interleukin 1 - resistance
DK43_RS00485	SM00642	Alpha-amylase domain
DK43_RS00490	SM00354	helix_turn _helix lactose operon repressor
DK43_RS00535	SM00836	DALR anticodon binding domain
DK43_RS00535	SM01016	Arginyl tRNA synthetase N terminal dom
DK43_RS00545	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
DK43_RS00545	SM00534	ATPase domain of DNA mismatch repair MUTS family
DK43_RS00555	SM00850	LytTr DNA-binding domain
DK43_RS00615	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS00645	SM00853	MutL C terminal dimerisation domain
DK43_RS00645	SM01340	DK43_RS00645
DK43_RS00650	SM00278	Helix-hairpin-helix DNA-binding motif class 1
DK43_RS00665	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS00670	SM00852	Probable molybdopterin binding domain
DK43_RS00675	SM00382	ATPases associated with a variety of cellular activities
DK43_RS00700	SM00732	Likely ribonuclease with RNase H fold.
DK43_RS00720	SM00155	Phospholipase D. Active site motifs.
DK43_RS00820	SM00984	UDP binding domain
DK43_RS00860	SM00448	cheY-homologous receiver domain
DK43_RS00860	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS00865	SM00387	Histidine kinase-like ATPases
DK43_RS00865	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS00870	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
DK43_RS00870	SM00474	3'-5' exonuclease
DK43_RS00870	SM00475	5'-3' exonuclease
DK43_RS00870	SM00482	DNA polymerase A domain
DK43_RS00875	SM00881	CoA binding domain
DK43_RS00905	SM00881	CoA binding domain
DK43_RS00930	SM01403	DK43_RS00930
DK43_RS00950	SM01382	DK43_RS00950
DK43_RS00950	SM01383	DK43_RS00950
DK43_RS00965	SM00322	K homology RNA-binding domain
DK43_RS00985	SM01374	DK43_RS00985
DK43_RS00990	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
DK43_RS01045	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS01060	SM00662	RNA polymerases D
DK43_RS01100	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01100	SM01086	C-terminal, D2-small domain, of ClpB protein
DK43_RS01145	SM00788	Adenylosuccinate synthetase
DK43_RS01185	SM00393	Putative single-stranded nucleic acids-binding domain
DK43_RS01185	SM01245	DK43_RS01185
DK43_RS01205	SM00493	DK43_RS01205
DK43_RS01220	SM00650	Ribosomal RNA adenine dimethylases
DK43_RS01245	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
DK43_RS01280	SM00838	Elongation factor G C-terminus
DK43_RS01280	SM00889	Elongation factor G, domain IV
DK43_RS01285	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
DK43_RS01290	SM00849	Metallo-beta-lactamase superfamily
DK43_RS01385	SM00463	Small MutS-related domain
DK43_RS01385	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
DK43_RS01385	SM00534	ATPase domain of DNA mismatch repair MUTS family
DK43_RS01415	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
DK43_RS01470	SM00854	Bacterial capsule synthesis protein PGA_cap
DK43_RS01485	SM00342	helix_turn_helix, arabinose operon control protein
DK43_RS01515	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS01525	SM00287	Bacterial SH3 domain homologues
DK43_RS01545	SM00448	cheY-homologous receiver domain
DK43_RS01545	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS01550	SM00387	Histidine kinase-like ATPases
DK43_RS01550	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS01560	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01575	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01605	SM00855	Phosphoglycerate mutase family
DK43_RS01610	SM00855	Phosphoglycerate mutase family
DK43_RS01655	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01670	SM00841	Elongation factor P, C-terminal
DK43_RS01670	SM01185	DK43_RS01670
DK43_RS01695	SM00354	helix_turn _helix lactose operon repressor
DK43_RS01715	SM00479	DK43_RS01715
DK43_RS01715	SM00481	DNA polymerase alpha chain like domain
DK43_RS01785	SM00363	S4 RNA-binding domain
DK43_RS01790	SM01387	DK43_RS01790
DK43_RS01835	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01860	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS01860	SM00322	K homology RNA-binding domain
DK43_RS01875	SM00840	DK43_RS01875
DK43_RS01890	SM00382	ATPases associated with a variety of cellular activities
DK43_RS01895	SM00967	RNA 2'-O ribose methyltransferase substrate binding
DK43_RS02015	SM00631	DK43_RS02015
DK43_RS02035	SM00855	Phosphoglycerate mutase family
DK43_RS02040	SM00855	Phosphoglycerate mutase family
DK43_RS02060	SM00271	DnaJ molecular chaperone homology domain
DK43_RS02105	SM00873	B3/4 domain
DK43_RS02130	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02135	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02145	SM00354	helix_turn _helix lactose operon repressor
DK43_RS02150	SM00640	Glycosyl hydrolases family 32
DK43_RS02170	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS02175	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02180	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02205	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS02205	SM00866	DK43_RS02205
DK43_RS02220	SM00957	SecA DEAD-like domain
DK43_RS02220	SM00958	SecA preprotein cross-linking domain
DK43_RS02240	SM01005	Alanine racemase, C-terminal domain
DK43_RS02245	SM00487	DEAD-like helicases superfamily
DK43_RS02245	SM00490	helicase superfamily c-terminal domain
DK43_RS02250	SM00870	DK43_RS02250
DK43_RS02305	SM00845	GatB domain
DK43_RS02330	SM01103	DK43_RS02330
DK43_RS02340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
DK43_RS02375	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS02385	SM00062	Bacterial periplasmic substrate-binding proteins
DK43_RS02400	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02400	SM00930	DK43_RS02400
DK43_RS02510	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS02535	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02595	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02605	SM01350	DK43_RS02605
DK43_RS02610	SM00448	cheY-homologous receiver domain
DK43_RS02610	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS02660	SM00487	DEAD-like helicases superfamily
DK43_RS02660	SM00490	helicase superfamily c-terminal domain
DK43_RS02715	SM00967	RNA 2'-O ribose methyltransferase substrate binding
DK43_RS02755	SM00116	Domain in cystathionine beta-synthase and other proteins.
DK43_RS02775	SM00363	S4 RNA-binding domain
DK43_RS02780	SM01234	DK43_RS02780
DK43_RS02815	SM00014	Acid phosphatase homologues
DK43_RS02825	SM00729	Elongator protein 3, MiaB family, Radical SAM
DK43_RS02865	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02865	SM01086	C-terminal, D2-small domain, of ClpB protein
DK43_RS02875	SM00899	DK43_RS02875
DK43_RS02890	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02935	SM00363	S4 RNA-binding domain
DK43_RS02960	SM00382	ATPases associated with a variety of cellular activities
DK43_RS02980	SM00411	bacterial (prokaryotic) histone like domain
DK43_RS02990	SM00855	Phosphoglycerate mutase family
DK43_RS03000	SM00493	DK43_RS03000
DK43_RS03040	SM01126	DK43_RS03040
DK43_RS03055	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS03080	SM00487	DEAD-like helicases superfamily
DK43_RS03080	SM00490	helicase superfamily c-terminal domain
DK43_RS03085	SM01133	DK43_RS03085
DK43_RS03090	SM00420	helix_turn_helix, Deoxyribose operon repressor
DK43_RS03090	SM01134	DK43_RS03090
DK43_RS03130	SM01061	CAT RNA binding domain
DK43_RS03175	SM00563	Phosphate acyltransferases
DK43_RS03190	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS03230	SM00465	GIY-YIG type nucleases (URI domain)
DK43_RS03250	SM00986	Uracil DNA glycosylase superfamily
DK43_RS03250	SM00987	UreE urease accessory protein, C-terminal domain 
DK43_RS03255	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS03265	SM00382	ATPases associated with a variety of cellular activities
DK43_RS03330	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
DK43_RS03340	SM00382	ATPases associated with a variety of cellular activities
DK43_RS03365	SM00420	helix_turn_helix, Deoxyribose operon repressor
DK43_RS03365	SM01134	DK43_RS03365
DK43_RS03425	SM00855	Phosphoglycerate mutase family
DK43_RS03480	SM00641	Glycosyl hydrolases family 25
DK43_RS03600	SM00470	ParB-like nuclease domain
DK43_RS03635	SM00487	DEAD-like helicases superfamily
DK43_RS03635	SM00490	helicase superfamily c-terminal domain
DK43_RS03725	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS03735	SM00448	cheY-homologous receiver domain
DK43_RS03735	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS03740	SM00387	Histidine kinase-like ATPases
DK43_RS03740	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS03765	SM01005	Alanine racemase, C-terminal domain
DK43_RS03770	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS03785	SM00857	Resolvase, N terminal domain
DK43_RS03810	SM00857	Resolvase, N terminal domain
DK43_RS03875	SM00889	Elongation factor G, domain IV
DK43_RS03880	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS03920	SM00382	ATPases associated with a variety of cellular activities
DK43_RS03930	SM00857	Resolvase, N terminal domain
DK43_RS03970	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
DK43_RS03970	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
DK43_RS03970	SM00493	DK43_RS03970
DK43_RS03980	SM00487	DEAD-like helicases superfamily
DK43_RS03980	SM00490	helicase superfamily c-terminal domain
DK43_RS03990	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04010	SM00342	helix_turn_helix, arabinose operon control protein
DK43_RS04015	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04020	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04025	SM00899	DK43_RS04025
DK43_RS04050	SM00857	Resolvase, N terminal domain
DK43_RS04085	SM00487	DEAD-like helicases superfamily
DK43_RS04130	SM00420	helix_turn_helix, Deoxyribose operon repressor
DK43_RS04130	SM01134	DK43_RS04130
DK43_RS04165	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04180	SM00873	B3/4 domain
DK43_RS04180	SM00874	tRNA synthetase B5 domain
DK43_RS04180	SM00896	Ferredoxin-fold anticodon binding domain
DK43_RS04210	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04240	SM00855	Phosphoglycerate mutase family
DK43_RS04270	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS04280	SM00481	DNA polymerase alpha chain like domain
DK43_RS04305	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04310	SM00062	Bacterial periplasmic substrate-binding proteins
DK43_RS04335	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04340	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04355	SM00904	Riboflavin kinase
DK43_RS04395	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04400	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04420	SM00881	CoA binding domain
DK43_RS04435	SM01400	DK43_RS04435
DK43_RS04440	SM01118	DK43_RS04440
DK43_RS04445	SM00954	Region found in RelA / SpoT proteins
DK43_RS04465	SM00478	endonuclease III
DK43_RS04515	SM00859	Semialdehyde dehydrogenase, NAD binding domain
DK43_RS04520	SM01130	DK43_RS04520
DK43_RS04535	SM00342	helix_turn_helix, arabinose operon control protein
DK43_RS04535	SM00871	Bacterial transcription activator, effector binding domain
DK43_RS04630	SM00487	DEAD-like helicases superfamily
DK43_RS04630	SM00490	helicase superfamily c-terminal domain
DK43_RS04675	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS04710	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS04760	SM00984	UDP binding domain
DK43_RS04770	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS04815	SM00382	ATPases associated with a variety of cellular activities
DK43_RS04830	SM00354	helix_turn _helix lactose operon repressor
DK43_RS04955	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS04990	SM00448	cheY-homologous receiver domain
DK43_RS04990	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS04995	SM00387	Histidine kinase-like ATPases
DK43_RS04995	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS05000	SM00642	Alpha-amylase domain
DK43_RS05030	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
DK43_RS05035	SM01133	DK43_RS05035
DK43_RS05050	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05085	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS05130	SM01192	DK43_RS05130
DK43_RS05130	SM01193	DK43_RS05130
DK43_RS05175	SM01207	DK43_RS05175
DK43_RS05180	SM00387	Histidine kinase-like ATPases
DK43_RS05180	SM00433	TopoisomeraseII
DK43_RS05200	SM00434	DNA Topoisomerase IV
DK43_RS05225	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS05245	SM00434	DNA Topoisomerase IV
DK43_RS05280	SM00882	Coenzyme A transferase
DK43_RS05285	SM00882	Coenzyme A transferase
DK43_RS05300	SM00849	Metallo-beta-lactamase superfamily
DK43_RS05315	SM01061	CAT RNA binding domain
DK43_RS05320	SM01266	DK43_RS05320
DK43_RS05330	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
DK43_RS05330	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
DK43_RS05330	SM00493	DK43_RS05330
DK43_RS05365	SM00861	Transketolase, pyrimidine binding domain
DK43_RS05390	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05390	SM00962	SRP54-type protein, GTPase domain
DK43_RS05390	SM00963	SRP54-type protein, helical bundle domain
DK43_RS05400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS05400	SM00866	DK43_RS05400
DK43_RS05420	SM00822	DK43_RS05420
DK43_RS05450	SM00937	DK43_RS05450
DK43_RS05480	SM01240	DK43_RS05480
DK43_RS05510	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
DK43_RS05525	SM00387	Histidine kinase-like ATPases
DK43_RS05530	SM00342	helix_turn_helix, arabinose operon control protein
DK43_RS05530	SM00448	cheY-homologous receiver domain
DK43_RS05565	SM00400	zinc finger
DK43_RS05565	SM00493	DK43_RS05565
DK43_RS05590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS05595	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05600	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05640	SM00642	Alpha-amylase domain
DK43_RS05645	SM00046	Diacylglycerol kinase catalytic domain (presumed)
DK43_RS05650	SM00292	breast cancer carboxy-terminal domain
DK43_RS05650	SM00532	Ligase N family
DK43_RS05675	SM00873	B3/4 domain
DK43_RS05680	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS05695	SM00116	Domain in cystathionine beta-synthase and other proteins.
DK43_RS05725	SM00986	Uracil DNA glycosylase superfamily
DK43_RS05725	SM00987	UreE urease accessory protein, C-terminal domain 
DK43_RS05740	SM00849	Metallo-beta-lactamase superfamily
DK43_RS05745	SM00278	Helix-hairpin-helix DNA-binding motif class 1
DK43_RS05755	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS05755	SM00955	DK43_RS05755
DK43_RS05775	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
DK43_RS05775	SM01232	DK43_RS05775
DK43_RS05820	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05825	SM00382	ATPases associated with a variety of cellular activities
DK43_RS05850	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
DK43_RS05850	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
DK43_RS05900	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
DK43_RS05940	SM00851	MGS-like domain
DK43_RS05940	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
DK43_RS05940	SM01209	DK43_RS05940
DK43_RS05945	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
DK43_RS05980	SM00562	DK43_RS05980
DK43_RS06005	SM00729	Elongator protein 3, MiaB family, Radical SAM
DK43_RS06015	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06030	SM00487	DEAD-like helicases superfamily
DK43_RS06030	SM00490	helicase superfamily c-terminal domain
DK43_RS06040	SM00062	Bacterial periplasmic substrate-binding proteins
DK43_RS06040	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
DK43_RS06040	SM00918	Ligated ion channel L-glutamate- and glycine-binding site
DK43_RS06045	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06050	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06055	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06060	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06065	SM00047	Lysozyme subfamily 2
DK43_RS06075	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06075	SM00994	ClpX C4-type zinc finger
DK43_RS06075	SM01086	C-terminal, D2-small domain, of ClpB protein
DK43_RS06100	SM00830	Chorismate mutase type II
DK43_RS06140	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
DK43_RS06145	SM00363	S4 RNA-binding domain
DK43_RS06170	SM00450	Rhodanese Homology Domain
DK43_RS06175	SM00450	Rhodanese Homology Domain
DK43_RS06180	SM00450	Rhodanese Homology Domain
DK43_RS06210	SM00981	DK43_RS06210
DK43_RS06230	SM00116	Domain in cystathionine beta-synthase and other proteins.
DK43_RS06230	SM00420	helix_turn_helix, Deoxyribose operon repressor
DK43_RS06260	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06275	SM00838	Elongation factor G C-terminus
DK43_RS06305	SM00487	DEAD-like helicases superfamily
DK43_RS06305	SM00490	helicase superfamily c-terminal domain
DK43_RS06395	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06415	SM00849	Metallo-beta-lactamase superfamily
DK43_RS06465	SM00731	SprT homologues.
DK43_RS06470	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS06470	SM00732	Likely ribonuclease with RNase H fold.
DK43_RS06510	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06510	SM00962	SRP54-type protein, GTPase domain
DK43_RS06510	SM00963	SRP54-type protein, helical bundle domain
DK43_RS06525	SM00968	SMC proteins Flexible Hinge Domain
DK43_RS06530	SM00358	Double-stranded RNA binding motif
DK43_RS06530	SM00535	Ribonuclease III family
DK43_RS06540	SM00849	Metallo-beta-lactamase superfamily
DK43_RS06545	SM00091	PAS domain
DK43_RS06545	SM00387	Histidine kinase-like ATPases
DK43_RS06545	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS06550	SM00448	cheY-homologous receiver domain
DK43_RS06550	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS06570	SM00354	helix_turn _helix lactose operon repressor
DK43_RS06590	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06765	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06770	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06775	SM00892	DNA/RNA non-specific endonuclease
DK43_RS06800	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06855	SM00642	Alpha-amylase domain
DK43_RS06875	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06890	SM00382	ATPases associated with a variety of cellular activities
DK43_RS06920	SM00028	Tetratricopeptide repeats
DK43_RS06930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
DK43_RS06930	SM00387	Histidine kinase-like ATPases
DK43_RS06930	SM00388	His Kinase A (phosphoacceptor) domain
DK43_RS06935	SM00448	cheY-homologous receiver domain
DK43_RS06935	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS06965	SM00387	Histidine kinase-like ATPases
DK43_RS06965	SM00433	TopoisomeraseII
DK43_RS06990	SM00479	DK43_RS06990
DK43_RS06990	SM00487	DEAD-like helicases superfamily
DK43_RS06990	SM00491	DK43_RS06990
DK43_RS06995	SM00849	Metallo-beta-lactamase superfamily
DK43_RS07005	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07010	SM00937	DK43_RS07010
DK43_RS07035	SM00831	Cation transporter/ATPase, N-terminus
DK43_RS07045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
DK43_RS07085	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
DK43_RS07215	SM00419	helix_turn_helix, cAMP Regulatory protein
DK43_RS07235	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07270	SM01329	DK43_RS07270
DK43_RS07290	SM00649	Ribosomal protein L11/L12
DK43_RS07305	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07305	SM00843	DK43_RS07305
DK43_RS07325	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07350	SM01022	DK43_RS07350
DK43_RS07425	SM00885	D5 N terminal like
DK43_RS07440	SM00357	Cold shock protein domain
DK43_RS07460	SM00245	tail specific protease
DK43_RS07475	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07485	SM00850	LytTr DNA-binding domain
DK43_RS07495	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07505	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07515	SM00387	Histidine kinase-like ATPases
DK43_RS07520	SM00448	cheY-homologous receiver domain
DK43_RS07520	SM00862	Transcriptional regulatory protein, C terminal
DK43_RS07555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
DK43_RS07570	SM00478	endonuclease III
DK43_RS07610	SM00116	Domain in cystathionine beta-synthase and other proteins.
DK43_RS07615	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07620	SM00382	ATPases associated with a variety of cellular activities
DK43_RS07655	SM00831	Cation transporter/ATPase, N-terminus
DK43_RS07695	SM01131	DK43_RS07695
DK43_RS07710	SM00642	Alpha-amylase domain
DK43_RS07720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS07720	SM00866	DK43_RS07720
DK43_RS07725	SM01091	Transporter associated domain
DK43_RS07745	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS07760	SM00363	S4 RNA-binding domain
DK43_RS07780	SM00864	Tubulin/FtsZ family, GTPase domain
DK43_RS07780	SM00865	Tubulin/FtsZ family, C-terminal domain
DK43_RS07785	SM00842	Cell division protein FtsA
DK43_RS07810	SM00838	Elongation factor G C-terminus
DK43_RS07820	SM00450	Rhodanese Homology Domain
DK43_RS07885	SM00487	DEAD-like helicases superfamily
DK43_RS07885	SM00490	helicase superfamily c-terminal domain
DK43_RS07975	SM00316	Ribosomal protein S1-like RNA-binding domain
DK43_RS07985	SM00421	helix_turn_helix, Lux Regulon
DK43_RS07985	SM00448	cheY-homologous receiver domain
DK43_RS07990	SM00387	Histidine kinase-like ATPases
DK43_RS08000	SM00220	Serine/Threonine protein kinases, catalytic domain
DK43_RS08000	SM00740	DK43_RS08000
DK43_RS08005	SM00331	Sigma factor PP2C-like phosphatases
DK43_RS08005	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
DK43_RS08020	SM00487	DEAD-like helicases superfamily
DK43_RS08020	SM00490	helicase superfamily c-terminal domain
DK43_RS08025	SM01409	DK43_RS08025
DK43_RS08030	SM00072	Guanylate kinase homologues.
DK43_RS08035	SM00322	K homology RNA-binding domain
DK43_RS08035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
DK43_RS08060	SM00981	DK43_RS08060
DK43_RS08115	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08125	SM00487	DEAD-like helicases superfamily
DK43_RS08125	SM00490	helicase superfamily c-terminal domain
DK43_RS08130	SM00936	Penicillin-binding protein 5, C-terminal domain 
DK43_RS08150	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08175	SM00062	Bacterial periplasmic substrate-binding proteins
DK43_RS08180	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08190	SM00244	prohibitin homologues
DK43_RS08195	SM00421	helix_turn_helix, Lux Regulon
DK43_RS08195	SM00448	cheY-homologous receiver domain
DK43_RS08210	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08215	SM01120	DK43_RS08215
DK43_RS08215	SM01121	DK43_RS08215
DK43_RS08235	SM00850	LytTr DNA-binding domain
DK43_RS08280	SM00740	DK43_RS08280
DK43_RS08295	SM00530	Helix-turn-helix XRE-family like proteins 
DK43_RS08385	SM00322	K homology RNA-binding domain
DK43_RS08415	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08500	SM00878	Biotin carboxylase C-terminal domain
DK43_RS08515	SM00825	Beta-ketoacyl synthase
DK43_RS08520	SM00822	DK43_RS08520
DK43_RS08525	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
DK43_RS08545	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS08590	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08595	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08605	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08620	SM00529	Helix-turn-helix diphteria tox regulatory element
DK43_RS08620	SM00899	DK43_RS08620
DK43_RS08630	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
DK43_RS08630	SM00954	Region found in RelA / SpoT proteins
DK43_RS08660	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
DK43_RS08700	SM00883	Chaperonin 10 Kd subunit
DK43_RS08735	SM00421	helix_turn_helix, Lux Regulon
DK43_RS08735	SM00448	cheY-homologous receiver domain
DK43_RS08740	SM00387	Histidine kinase-like ATPases
DK43_RS08810	SM01323	DK43_RS08810
DK43_RS08820	SM00861	Transketolase, pyrimidine binding domain
DK43_RS08835	SM01007	Class II Aldolase and Adducin N-terminal domain
DK43_RS08845	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
DK43_RS08865	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08865	SM01086	C-terminal, D2-small domain, of ClpB protein
DK43_RS08915	SM00382	ATPases associated with a variety of cellular activities
DK43_RS08925	SM01230	DK43_RS08925
DK43_RS08930	SM00422	helix_turn_helix, mercury resistance
DK43_RS08940	SM00257	Lysin motif
DK43_RS08955	SM00663	RNA polymerase I subunit A N-terminus
DK43_RS08970	SM00363	S4 RNA-binding domain
DK43_RS09010	SM00382	ATPases associated with a variety of cellular activities
DK43_RS09105	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
DK43_RS09105	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
DK43_RS09135	SM00422	helix_turn_helix, mercury resistance
DK43_RS09270	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
DK43_RS09270	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
DK43_RS09315	SM00382	ATPases associated with a variety of cellular activities
DK43_RS09320	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS09355	SM00347	helix_turn_helix multiple antibiotic resistance protein
DK43_RS09435	SM01130	DK43_RS09435
DK43_RS09485	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
DK43_RS09490	SM00226	Low molecular weight phosphatase family
DK43_RS09515	SM00382	ATPases associated with a variety of cellular activities
DK43_RS09525	SM01133	DK43_RS09525
DK43_RS09560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
DK43_RS09560	SM00866	DK43_RS09560
DK43_RS09580	SM01120	DK43_RS09580
DK43_RS09600	SM00998	Adenylosuccinate lyase C-terminus
DK43_RS09620	SM01001	AIR carboxylase
DK43_RS09630	SM01209	DK43_RS09630
DK43_RS09630	SM01210	DK43_RS09630
DK43_RS09660	SM00387	Histidine kinase-like ATPases
DK43_RS09675	SM00798	AICARFT/IMPCHase bienzyme
DK43_RS09675	SM00851	MGS-like domain
DK43_RS09700	SM01211	DK43_RS09700
DK43_RS09730	SM01400	DK43_RS09730
DK43_RS09875	SM00530	Helix-turn-helix XRE-family like proteins 
