locus-tag class description SCI_RS00005 PF00308 Bacterial dnaA protein SCI_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SCI_RS00010 PF02767 DNA polymerase III beta subunit, central domain SCI_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SCI_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SCI_RS00025 PF01926 50S ribosome-binding GTPase SCI_RS00025 PF06071 Protein of unknown function (DUF933) SCI_RS00030 PF01195 Peptidyl-tRNA hydrolase SCI_RS00035 PF00270 DEAD/DEAH box helicase SCI_RS00035 PF00271 Helicase conserved C-terminal domain SCI_RS00035 PF02559 CarD-like/TRCF domain SCI_RS00035 PF03461 TRCF domain SCI_RS00035 PF17757 UvrB interaction domain SCI_RS00040 PF01479 S4 domain SCI_RS00055 PF01171 PP-loop family SCI_RS00060 PF00156 Phosphoribosyl transferase domain SCI_RS00065 PF17862 AAA+ lid domain SCI_RS00065 PF06480 FtsH Extracellular SCI_RS00065 PF01434 Peptidase family M41 SCI_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SCI_RS00185 PF04085 rod shape-determining protein MreC SCI_RS00195 PF05257 CHAP domain SCI_RS00195 PF01476 LysM domain SCI_RS00200 PF14572 Phosphoribosyl synthetase-associated domain SCI_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SCI_RS00205 PF00155 Aminotransferase class I and II SCI_RS00210 PF11967 Recombination protein O N terminal SCI_RS00210 PF02565 Recombination protein O C terminal SCI_RS00215 PF02504 Fatty acid synthesis protein SCI_RS00220 PF00550 Phosphopantetheine attachment site SCI_RS00225 PF01259 SAICAR synthetase SCI_RS00230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SCI_RS00230 PF00586 AIR synthase related protein, N-terminal domain SCI_RS00230 PF02769 AIR synthase related protein, C-terminal domain SCI_RS00240 PF13537 Glutamine amidotransferase domain SCI_RS00240 PF00156 Phosphoribosyl transferase domain SCI_RS00245 PF02769 AIR synthase related protein, C-terminal domain SCI_RS00245 PF00586 AIR synthase related protein, N-terminal domain SCI_RS00250 PF00551 Formyl transferase SCI_RS00260 PF01808 AICARFT/IMPCHase bienzyme SCI_RS00260 PF02142 MGS-like domain SCI_RS00265 PF05257 CHAP domain SCI_RS00265 PF01476 LysM domain SCI_RS00270 PF02843 Phosphoribosylglycinamide synthetase, C domain SCI_RS00270 PF02844 Phosphoribosylglycinamide synthetase, N domain SCI_RS00270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SCI_RS00275 PF00731 AIR carboxylase SCI_RS00280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SCI_RS00280 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SCI_RS00280 PF02222 ATP-grasp domain SCI_RS00300 PF01177 Asp/Glu/Hydantoin racemase SCI_RS00305 PF10397 Adenylosuccinate lyase C-terminus SCI_RS00305 PF00206 Lyase SCI_RS00310 PF02733 Dak1 domain SCI_RS00320 PF02733 Dak1 domain SCI_RS00325 PF02734 DAK2 domain SCI_RS00330 PF03610 PTS system fructose IIA component SCI_RS00335 PF00230 Major intrinsic protein SCI_RS00340 PF07702 UTRA domain SCI_RS00340 PF00392 Bacterial regulatory proteins, gntR family SCI_RS00345 PF01301 Glycosyl hydrolases family 35 SCI_RS00350 PF03830 PTS system sorbose subfamily IIB component SCI_RS00355 PF03609 PTS system sorbose-specific iic component SCI_RS00360 PF03613 PTS system mannose/fructose/sorbose family IID component SCI_RS00370 PF01380 SIS domain SCI_RS00375 PF01791 DeoC/LacD family aldolase SCI_RS00380 PF01263 Aldose 1-epimerase SCI_RS00385 PF02920 DNA binding domain of tn916 integrase SCI_RS00385 PF00589 Phage integrase family SCI_RS00390 PF09035 Excisionase from transposon Tn916 SCI_RS00415 PF00679 Elongation factor G C-terminus SCI_RS00415 PF14492 Elongation Factor G, domain II SCI_RS00415 PF03764 Elongation factor G, domain IV SCI_RS00415 PF00009 Elongation factor Tu GTP binding domain SCI_RS00425 PF00877 NlpC/P60 family SCI_RS00455 PF18106 Rolling Circle replication initiation protein N-terminal domain SCI_RS00455 PF02486 Replication initiation factor SCI_RS00480 PF02522 Aminoglycoside 3-N-acetyltransferase SCI_RS00500 PF00005 ABC transporter SCI_RS00510 PF05491 RuvB C-terminal winged helix domain SCI_RS00510 PF17864 RuvB AAA lid domain SCI_RS00510 PF05496 Holliday junction DNA helicase RuvB P-loop domain SCI_RS00520 PF01451 Low molecular weight phosphotyrosine protein phosphatase SCI_RS00530 PF01757 Acyltransferase family SCI_RS00535 PF00465 Iron-containing alcohol dehydrogenase SCI_RS00535 PF00171 Aldehyde dehydrogenase family SCI_RS00545 PF13419 Haloacid dehalogenase-like hydrolase SCI_RS00550 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SCI_RS00560 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS00565 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS00580 PF00701 Dihydrodipicolinate synthetase family SCI_RS00585 PF00480 ROK family SCI_RS00600 PF01496 V-type ATPase 116kDa subunit family SCI_RS00605 PF00137 ATP synthase subunit C SCI_RS00615 PF01992 ATP synthase (C/AC39) subunit SCI_RS00620 PF01990 ATP synthase (F/14-kDa) subunit SCI_RS00625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SCI_RS00625 PF16886 ATPsynthase alpha/beta subunit N-term extension SCI_RS00625 PF02874 ATP synthase alpha/beta family, beta-barrel domain SCI_RS00630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SCI_RS00630 PF02874 ATP synthase alpha/beta family, beta-barrel domain SCI_RS00635 PF01813 ATP synthase subunit D SCI_RS00640 PF14821 Threonine synthase N terminus SCI_RS00640 PF00291 Pyridoxal-phosphate dependent enzyme SCI_RS00650 PF13419 Haloacid dehalogenase-like hydrolase SCI_RS00660 PF03109 ABC1 family SCI_RS00670 PF17210 SdrD B-like domain SCI_RS00670 PF00746 LPXTG cell wall anchor motif SCI_RS00670 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SCI_RS00670 PF17961 Bacterial Ig domain SCI_RS00670 PF04650 YSIRK type signal peptide SCI_RS00680 PF01047 MarR family SCI_RS00685 PF00005 ABC transporter SCI_RS00690 PF00950 ABC 3 transport family SCI_RS00695 PF01297 Zinc-uptake complex component A periplasmic SCI_RS00695 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SCI_RS00705 PF00403 Heavy-metal-associated domain SCI_RS00715 PF01479 S4 domain SCI_RS00715 PF00849 RNA pseudouridylate synthase SCI_RS00720 PF00905 Penicillin binding protein transpeptidase domain SCI_RS00720 PF00912 Transglycosylase SCI_RS00730 PF00467 KOW motif SCI_RS00730 PF02357 Transcription termination factor nusG SCI_RS00745 PF00318 Ribosomal protein S2 SCI_RS00750 PF00889 Elongation factor TS SCI_RS00760 PF05848 CtsR N-terminal HTH domain SCI_RS00760 PF17727 CtsR C-terminal dimerization domain SCI_RS00765 PF07724 AAA domain (Cdc48 subfamily) SCI_RS00765 PF10431 C-terminal, D2-small domain, of ClpB protein SCI_RS00765 PF17871 AAA lid domain SCI_RS00765 PF00004 ATPase family associated with various cellular activities (AAA) SCI_RS00765 PF02861 Clp amino terminal domain, pathogenicity island component SCI_RS00775 PF01207 Dihydrouridine synthase (Dus) SCI_RS00780 PF01430 Hsp33 protein SCI_RS00805 PF04262 Glutamate-cysteine ligase SCI_RS00805 PF18419 ATP-grasp-like domain SCI_RS00805 PF02655 ATP-grasp domain SCI_RS00810 PF00709 Adenylosuccinate synthetase SCI_RS00825 PF14437 MafB19-like deaminase SCI_RS00850 PF00342 Phosphoglucose isomerase SCI_RS00855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SCI_RS00855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SCI_RS00860 PF00825 Ribonuclease P SCI_RS00865 PF02096 60Kd inner membrane protein SCI_RS00995 PF03432 Relaxase/Mobilisation nuclease domain SCI_RS01005 PF00239 Resolvase, N terminal domain SCI_RS01005 PF02796 Helix-turn-helix domain of resolvase SCI_RS01025 PF00468 Ribosomal protein L34 SCI_RS01030 PF01026 TatD related DNase SCI_RS01035 PF13331 Domain of unknown function (DUF4093) SCI_RS01045 PF00398 Ribosomal RNA adenine dimethylase SCI_RS01060 PF16745 RsgA N-terminal domain SCI_RS01060 PF03193 RsgA GTPase SCI_RS01065 PF00834 Ribulose-phosphate 3 epimerase family SCI_RS01070 PF04263 Thiamin pyrophosphokinase, catalytic domain SCI_RS01070 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SCI_RS01075 PF02646 RmuC family SCI_RS01080 PF01336 OB-fold nucleic acid binding domain SCI_RS01080 PF01966 HD domain SCI_RS01085 PF00156 Phosphoribosyl transferase domain SCI_RS01085 PF09182 Bacterial purine repressor, N-terminal SCI_RS01095 PF00164 Ribosomal protein S12/S23 SCI_RS01100 PF00177 Ribosomal protein S7p/S5e SCI_RS01105 PF14492 Elongation Factor G, domain II SCI_RS01105 PF03764 Elongation factor G, domain IV SCI_RS01105 PF00009 Elongation factor Tu GTP binding domain SCI_RS01105 PF03144 Elongation factor Tu domain 2 SCI_RS01105 PF00679 Elongation factor G C-terminus SCI_RS01110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SCI_RS01110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SCI_RS01115 PF00753 Metallo-beta-lactamase superfamily SCI_RS01115 PF17770 Ribonuclease J C-terminal domain SCI_RS01115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SCI_RS01120 PF07288 Protein of unknown function (DUF1447) SCI_RS01125 PF00814 Glycoprotease family SCI_RS01135 PF00814 Glycoprotease family SCI_RS01150 PF01381 Helix-turn-helix SCI_RS01165 PF07739 TipAS antibiotic-recognition domain SCI_RS01165 PF13411 MerR HTH family regulatory protein SCI_RS01175 PF04394 Protein of unknown function, DUF536 SCI_RS01175 PF08279 HTH domain SCI_RS01185 PF03009 Glycerophosphoryl diester phosphodiesterase family SCI_RS01190 PF02575 YbaB/EbfC DNA-binding family SCI_RS01195 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SCI_RS01195 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SCI_RS01195 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SCI_RS01200 PF00230 Major intrinsic protein SCI_RS01215 PF00144 Beta-lactamase SCI_RS01220 PF00288 GHMP kinases N terminal domain SCI_RS01220 PF08544 GHMP kinases C terminal SCI_RS01220 PF10509 Galactokinase galactose-binding signature SCI_RS01230 PF00288 GHMP kinases N terminal domain SCI_RS01230 PF08544 GHMP kinases C terminal SCI_RS01235 PF01070 FMN-dependent dehydrogenase SCI_RS01240 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SCI_RS01245 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SCI_RS01245 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SCI_RS01260 PF01228 Glycine radical SCI_RS01260 PF02901 Pyruvate formate lyase-like SCI_RS01270 PF11799 impB/mucB/samB family C-terminal domain SCI_RS01270 PF00817 impB/mucB/samB family SCI_RS01275 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SCI_RS01275 PF13538 UvrD-like helicase C-terminal domain SCI_RS01275 PF14490 Helix-hairpin-helix containing domain SCI_RS01280 PF10502 Signal peptidase, peptidase S26 SCI_RS01285 PF01351 Ribonuclease HII SCI_RS01285 PF11858 Domain of unknown function (DUF3378) SCI_RS01300 PF00488 MutS domain V SCI_RS01300 PF01713 Smr domain SCI_RS01305 PF03577 Peptidase family C69 SCI_RS01310 PF00085 Thioredoxin SCI_RS01320 PF00924 Mechanosensitive ion channel SCI_RS01330 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SCI_RS01330 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SCI_RS01335 PF01180 Dihydroorotate dehydrogenase SCI_RS01340 PF01625 Peptide methionine sulfoxide reductase SCI_RS01340 PF01641 SelR domain SCI_RS01345 PF01325 Iron dependent repressor, N-terminal DNA binding domain SCI_RS01345 PF00480 ROK family SCI_RS01350 PF02378 Phosphotransferase system, EIIC SCI_RS01360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS01365 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SCI_RS01370 PF00367 phosphotransferase system, EIIB SCI_RS01370 PF02378 Phosphotransferase system, EIIC SCI_RS01370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SCI_RS01375 PF09587 Bacterial capsule synthesis protein PGA_cap SCI_RS01385 PF12833 Helix-turn-helix domain SCI_RS01385 PF00072 Response regulator receiver domain SCI_RS01390 PF00232 Glycosyl hydrolase family 1 SCI_RS01395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SCI_RS01420 PF00728 Glycosyl hydrolase family 20, catalytic domain SCI_RS01420 PF04650 YSIRK type signal peptide SCI_RS01420 PF00746 LPXTG cell wall anchor motif SCI_RS01420 PF07501 G5 domain SCI_RS01430 PF02557 D-alanyl-D-alanine carboxypeptidase SCI_RS01435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SCI_RS01435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SCI_RS01435 PF00205 Thiamine pyrophosphate enzyme, central domain SCI_RS01445 PF16657 Maltogenic Amylase, C-terminal domain SCI_RS01445 PF00128 Alpha amylase, catalytic domain SCI_RS01455 PF00005 ABC transporter SCI_RS01465 PF11975 Family 4 glycosyl hydrolase C-terminal domain SCI_RS01465 PF02056 Family 4 glycosyl hydrolase SCI_RS01470 PF11975 Family 4 glycosyl hydrolase C-terminal domain SCI_RS01470 PF02056 Family 4 glycosyl hydrolase SCI_RS01480 PF00300 Histidine phosphatase superfamily (branch 1) SCI_RS01505 PF01250 Ribosomal protein S6 SCI_RS01510 PF00436 Single-strand binding protein family SCI_RS01515 PF01084 Ribosomal protein S18 SCI_RS01530 PF17755 UvrA DNA-binding domain SCI_RS01530 PF17760 UvrA interaction domain SCI_RS01530 PF00005 ABC transporter SCI_RS01540 PF01321 Creatinase/Prolidase N-terminal domain SCI_RS01540 PF00557 Metallopeptidase family M24 SCI_RS01545 PF01132 Elongation factor P (EF-P) OB domain SCI_RS01545 PF09285 Elongation factor P, C-terminal SCI_RS01545 PF08207 Elongation factor P (EF-P) KOW-like domain SCI_RS01550 PF03780 Asp23 family, cell envelope-related function SCI_RS01555 PF01029 NusB family SCI_RS01590 PF00696 Amino acid kinase family SCI_RS01590 PF13840 ACT domain SCI_RS01595 PF00378 Enoyl-CoA hydratase/isomerase SCI_RS01605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SCI_RS01605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SCI_RS01610 PF00550 Phosphopantetheine attachment site SCI_RS01615 PF03060 Nitronate monooxygenase SCI_RS01620 PF00698 Acyl transferase domain SCI_RS01630 PF02801 Beta-ketoacyl synthase, C-terminal domain SCI_RS01630 PF00109 Beta-ketoacyl synthase, N-terminal domain SCI_RS01635 PF00364 Biotin-requiring enzyme SCI_RS01640 PF07977 FabA-like domain SCI_RS01645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SCI_RS01645 PF00289 Biotin carboxylase, N-terminal domain SCI_RS01645 PF02785 Biotin carboxylase C-terminal domain SCI_RS01650 PF01039 Carboxyl transferase domain SCI_RS01650 PF17848 Acetyl-coA carboxylase zinc finger domain SCI_RS01655 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SCI_RS01660 PF09335 SNARE associated Golgi protein SCI_RS01665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SCI_RS01665 PF02403 Seryl-tRNA synthetase N-terminal domain SCI_RS01675 PF03613 PTS system mannose/fructose/sorbose family IID component SCI_RS01680 PF03609 PTS system sorbose-specific iic component SCI_RS01685 PF03830 PTS system sorbose subfamily IIB component SCI_RS01685 PF03610 PTS system fructose IIA component SCI_RS01690 PF08240 Alcohol dehydrogenase GroES-like domain SCI_RS01690 PF00107 Zinc-binding dehydrogenase SCI_RS01705 PF00860 Permease family SCI_RS01710 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SCI_RS01720 PF03816 Cell envelope-related transcriptional attenuator domain SCI_RS01730 PF01230 HIT domain SCI_RS01735 PF00005 ABC transporter SCI_RS01745 PF01636 Phosphotransferase enzyme family SCI_RS01750 PF02390 Putative methyltransferase SCI_RS01760 PF17384 RimP C-terminal SH3 domain SCI_RS01760 PF02576 RimP N-terminal domain SCI_RS01765 PF00575 S1 RNA binding domain SCI_RS01765 PF08529 NusA N-terminal domain SCI_RS01765 PF13184 NusA-like KH domain SCI_RS01770 PF04296 Protein of unknown function (DUF448) SCI_RS01775 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SCI_RS01780 PF04760 Translation initiation factor IF-2, N-terminal region SCI_RS01780 PF11987 Translation-initiation factor 2 SCI_RS01780 PF00009 Elongation factor Tu GTP binding domain SCI_RS01785 PF02033 Ribosome-binding factor A SCI_RS01790 PF02690 Na+/Pi-cotransporter SCI_RS01800 PF01979 Amidohydrolase family SCI_RS01805 PF00248 Aldo/keto reductase family SCI_RS01825 PF02091 Glycyl-tRNA synthetase alpha subunit SCI_RS01830 PF05746 DALR anticodon binding domain SCI_RS01830 PF02092 Glycyl-tRNA synthetase beta subunit SCI_RS01835 PF05979 Bacterial protein of unknown function (DUF896) SCI_RS01845 PF02386 Cation transport protein SCI_RS01860 PF01795 MraW methylase family SCI_RS01870 PF03717 Penicillin-binding Protein dimerisation domain SCI_RS01870 PF03793 PASTA domain SCI_RS01870 PF00905 Penicillin binding protein transpeptidase domain SCI_RS01875 PF00953 Glycosyl transferase family 4 SCI_RS01875 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SCI_RS01890 PF01116 Fructose-bisphosphate aldolase class-II SCI_RS01910 PF00830 Ribosomal L28 family SCI_RS01915 PF03780 Asp23 family, cell envelope-related function SCI_RS01920 PF13684 Dihydroxyacetone kinase family SCI_RS01920 PF02734 DAK2 domain SCI_RS01940 PF00665 Integrase core domain SCI_RS01940 PF13276 HTH-like domain SCI_RS01940 PF13333 Integrase core domain SCI_RS01945 PF05384 Sensor protein DegS SCI_RS01945 PF07730 Histidine kinase SCI_RS01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS01980 PF00005 ABC transporter SCI_RS02010 PF00005 ABC transporter SCI_RS02015 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS02025 PF02673 Bacitracin resistance protein BacA SCI_RS02030 PF05389 Negative regulator of genetic competence (MecA) SCI_RS02035 PF00953 Glycosyl transferase family 4 SCI_RS02040 PF00005 ABC transporter SCI_RS02045 PF01458 Uncharacterized protein family (UPF0051) SCI_RS02050 PF00266 Aminotransferase class-V SCI_RS02055 PF01592 NifU-like N terminal domain SCI_RS02060 PF07943 Penicillin-binding protein 5, C-terminal domain SCI_RS02060 PF00768 D-alanyl-D-alanine carboxypeptidase SCI_RS02065 PF00270 DEAD/DEAH box helicase SCI_RS02065 PF00271 Helicase conserved C-terminal domain SCI_RS02070 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS02075 PF00005 ABC transporter SCI_RS02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS02090 PF00324 Amino acid permease SCI_RS02095 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SCI_RS02095 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SCI_RS02095 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SCI_RS02100 PF02540 NAD synthase SCI_RS02105 PF03051 Peptidase C1-like family SCI_RS02110 PF00905 Penicillin binding protein transpeptidase domain SCI_RS02110 PF00912 Transglycosylase SCI_RS02115 PF03838 Recombination protein U SCI_RS02120 PF06908 YspA SLOG family SCI_RS02125 PF05103 DivIVA protein SCI_RS02130 PF01170 Putative RNA methylase family UPF0020 SCI_RS02130 PF02926 THUMP domain SCI_RS02135 PF18708 MapZ extracellular C-terminal domain 2 SCI_RS02135 PF18041 MapZ extracellular domain 1 SCI_RS02140 PF00578 AhpC/TSA family SCI_RS02145 PF13192 Thioredoxin domain SCI_RS02145 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS02150 PF02664 S-Ribosylhomocysteinase (LuxS) SCI_RS02155 PF00013 KH domain SCI_RS02155 PF01966 HD domain SCI_RS02155 PF12072 Domain of unknown function (DUF3552) SCI_RS02160 PF00625 Guanylate kinase SCI_RS02165 PF01192 RNA polymerase Rpb6 SCI_RS02170 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SCI_RS02170 PF00271 Helicase conserved C-terminal domain SCI_RS02170 PF17764 3′ DNA-binding domain (3′BD) SCI_RS02170 PF18074 Primosomal protein N C-terminal domain SCI_RS02170 PF04851 Type III restriction enzyme, res subunit SCI_RS02175 PF00551 Formyl transferase SCI_RS02175 PF02911 Formyl transferase, C-terminal domain SCI_RS02190 PF00069 Protein kinase domain SCI_RS02190 PF03793 PASTA domain SCI_RS02200 PF07730 Histidine kinase SCI_RS02200 PF00672 HAMP domain SCI_RS02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS02205 PF00072 Response regulator receiver domain SCI_RS02205 PF00196 Bacterial regulatory proteins, luxR family SCI_RS02210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SCI_RS02215 PF00013 KH domain SCI_RS02215 PF00575 S1 RNA binding domain SCI_RS02215 PF03725 3' exoribonuclease family, domain 2 SCI_RS02215 PF01138 3' exoribonuclease family, domain 1 SCI_RS02215 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SCI_RS02225 PF04167 Protein of unknown function (DUF402) SCI_RS02230 PF02631 RecX family SCI_RS02235 PF01636 Phosphotransferase enzyme family SCI_RS02240 PF05958 tRNA (Uracil-5-)-methyltransferase SCI_RS02240 PF01938 TRAM domain SCI_RS02245 PF03060 Nitronate monooxygenase SCI_RS02265 PF00958 GMP synthase C terminal domain SCI_RS02265 PF13302 Acetyltransferase (GNAT) domain SCI_RS02265 PF13673 Acetyltransferase (GNAT) domain SCI_RS02265 PF00117 Glutamine amidotransferase class-I SCI_RS02265 PF03352 Methyladenine glycosylase SCI_RS02275 PF00133 tRNA synthetases class I (I, L, M and V) SCI_RS02275 PF10458 Valyl tRNA synthetase tRNA binding arm SCI_RS02275 PF08264 Anticodon-binding domain of tRNA SCI_RS02290 PF17573 GA-like domain SCI_RS02290 PF00746 LPXTG cell wall anchor motif SCI_RS02290 PF01378 B domain SCI_RS02310 PF00291 Pyridoxal-phosphate dependent enzyme SCI_RS02315 PF09186 Domain of unknown function (DUF1949) SCI_RS02315 PF01205 Uncharacterized protein family UPF0029 SCI_RS02320 PF00271 Helicase conserved C-terminal domain SCI_RS02320 PF04851 Type III restriction enzyme, res subunit SCI_RS02330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SCI_RS02330 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SCI_RS02340 PF01467 Cytidylyltransferase-like SCI_RS02345 PF13180 PDZ domain SCI_RS02345 PF05362 Lon protease (S16) C-terminal proteolytic domain SCI_RS02350 PF06265 Protein of unknown function (DUF1027) SCI_RS02355 PF04055 Radical SAM superfamily SCI_RS02365 PF06750 Bacterial Peptidase A24 N-terminal domain SCI_RS02365 PF01478 Type IV leader peptidase family SCI_RS02370 PF00210 Ferritin-like domain SCI_RS02375 PF00589 Phage integrase family SCI_RS02375 PF02920 DNA binding domain of tn916 integrase SCI_RS02380 PF09035 Excisionase from transposon Tn916 SCI_RS02395 PF01554 MatE SCI_RS02425 PF00581 Rhodanese-like domain SCI_RS02435 PF00009 Elongation factor Tu GTP binding domain SCI_RS02435 PF14492 Elongation Factor G, domain II SCI_RS02435 PF03144 Elongation factor Tu domain 2 SCI_RS02435 PF00679 Elongation factor G C-terminus SCI_RS02445 PF08245 Mur ligase middle domain SCI_RS02445 PF02875 Mur ligase family, glutamate ligase domain SCI_RS02450 PF04101 Glycosyltransferase family 28 C-terminal domain SCI_RS02450 PF03033 Glycosyltransferase family 28 N-terminal domain SCI_RS02455 PF08478 POTRA domain, FtsQ-type SCI_RS02455 PF03799 Cell division protein FtsQ SCI_RS02460 PF02491 SHS2 domain inserted in FTSA SCI_RS02460 PF11983 Membrane-attachment and polymerisation-promoting switch SCI_RS02465 PF00091 Tubulin/FtsZ family, GTPase domain SCI_RS02465 PF12327 FtsZ family, C-terminal domain SCI_RS02470 PF01168 Alanine racemase, N-terminal domain SCI_RS02475 PF04472 Cell division protein SepF SCI_RS02490 PF05103 DivIVA protein SCI_RS02495 PF08264 Anticodon-binding domain of tRNA SCI_RS02495 PF00133 tRNA synthetases class I (I, L, M and V) SCI_RS02500 PF01594 AI-2E family transporter SCI_RS02505 PF01293 Phosphoenolpyruvate carboxykinase SCI_RS02510 PF00571 CBS domain SCI_RS02510 PF01595 Cyclin M transmembrane N-terminal domain SCI_RS02510 PF03471 Transporter associated domain SCI_RS02515 PF00392 Bacterial regulatory proteins, gntR family SCI_RS02515 PF07702 UTRA domain SCI_RS02525 PF16657 Maltogenic Amylase, C-terminal domain SCI_RS02525 PF00128 Alpha amylase, catalytic domain SCI_RS02535 PF04055 Radical SAM superfamily SCI_RS02540 PF01368 DHH family SCI_RS02540 PF02833 DHHA2 domain SCI_RS02560 PF08245 Mur ligase middle domain SCI_RS02560 PF02875 Mur ligase family, glutamate ligase domain SCI_RS02565 PF01943 Polysaccharide biosynthesis protein SCI_RS02565 PF14667 Polysaccharide biosynthesis C-terminal domain SCI_RS02570 PF00155 Aminotransferase class I and II SCI_RS02575 PF00690 Cation transporter/ATPase, N-terminus SCI_RS02575 PF00689 Cation transporting ATPase, C-terminus SCI_RS02585 PF00574 Clp protease SCI_RS02590 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SCI_RS02595 PF13458 Periplasmic binding protein SCI_RS02600 PF02653 Branched-chain amino acid transport system / permease component SCI_RS02605 PF11862 Domain of unknown function (DUF3382) SCI_RS02605 PF02653 Branched-chain amino acid transport system / permease component SCI_RS02610 PF00005 ABC transporter SCI_RS02610 PF12399 Branched-chain amino acid ATP-binding cassette transporter SCI_RS02615 PF00005 ABC transporter SCI_RS02620 PF00571 CBS domain SCI_RS02625 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SCI_RS02625 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SCI_RS02630 PF02223 Thymidylate kinase SCI_RS02635 PF09115 DNA polymerase III, delta subunit, C terminal SCI_RS02640 PF06156 Initiation control protein YabA SCI_RS02645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SCI_RS02650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SCI_RS02650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SCI_RS02655 PF03960 ArsC family SCI_RS02660 PF00730 HhH-GPD superfamily base excision DNA repair protein SCI_RS02660 PF10576 Iron-sulfur binding domain of endonuclease III SCI_RS02660 PF00633 Helix-hairpin-helix motif SCI_RS02665 PF03372 Endonuclease/Exonuclease/phosphatase family SCI_RS02680 PF01022 Bacterial regulatory protein, arsR family SCI_RS02705 PF09334 tRNA synthetases class I (M) SCI_RS02705 PF01588 Putative tRNA binding domain SCI_RS02715 PF00072 Response regulator receiver domain SCI_RS02715 PF00486 Transcriptional regulatory protein, C terminal SCI_RS02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS02730 PF00005 ABC transporter SCI_RS02740 PF13520 Amino acid permease SCI_RS02760 PF00313 'Cold-shock' DNA-binding domain SCI_RS02790 PF14602 Hexapeptide repeat of succinyl-transferase SCI_RS02790 PF12804 MobA-like NTP transferase domain SCI_RS02790 PF00132 Bacterial transferase hexapeptide (six repeats) SCI_RS02795 PF00293 NUDIX domain SCI_RS02805 PF01048 Phosphorylase superfamily SCI_RS02815 PF12848 ABC transporter SCI_RS02815 PF00005 ABC transporter SCI_RS02820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SCI_RS02830 PF04024 PspC domain SCI_RS02835 PF17854 FtsK alpha domain SCI_RS02835 PF01580 FtsK/SpoIIIE family SCI_RS02835 PF09397 Ftsk gamma domain SCI_RS02850 PF03946 Ribosomal protein L11, N-terminal domain SCI_RS02850 PF00298 Ribosomal protein L11, RNA binding domain SCI_RS02855 PF00687 Ribosomal protein L1p/L10e family SCI_RS02860 PF00696 Amino acid kinase family SCI_RS02865 PF01765 Ribosome recycling factor SCI_RS02870 PF13509 S1 domain SCI_RS02870 PF17783 CvfB-like winged helix domain SCI_RS02875 PF02384 N-6 DNA Methylase SCI_RS02875 PF12161 HsdM N-terminal domain SCI_RS02885 PF01420 Type I restriction modification DNA specificity domain SCI_RS02890 PF01420 Type I restriction modification DNA specificity domain SCI_RS02895 PF18766 SWI2/SNF2 ATPase SCI_RS02895 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SCI_RS02895 PF12008 Type I restriction and modification enzyme - subunit R C terminal SCI_RS02900 PF06144 DNA polymerase III, delta subunit SCI_RS02905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SCI_RS02905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SCI_RS02915 PF00005 ABC transporter SCI_RS02915 PF03412 Peptidase C39 family SCI_RS02915 PF00664 ABC transporter transmembrane region SCI_RS02930 PF00989 PAS fold SCI_RS02930 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SCI_RS02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS02930 PF17203 Single cache domain 3 SCI_RS02995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SCI_RS02995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SCI_RS03000 PF00696 Amino acid kinase family SCI_RS03005 PF03606 C4-dicarboxylate anaerobic carrier SCI_RS03010 PF01546 Peptidase family M20/M25/M40 SCI_RS03015 PF01316 Arginine repressor, DNA binding domain SCI_RS03015 PF02863 Arginine repressor, C-terminal domain SCI_RS03020 PF02547 Queuosine biosynthesis protein SCI_RS03025 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SCI_RS03030 PF00768 D-alanyl-D-alanine carboxypeptidase SCI_RS03030 PF07943 Penicillin-binding protein 5, C-terminal domain SCI_RS03040 PF00232 Glycosyl hydrolase family 1 SCI_RS03050 PF04193 PQ loop repeat SCI_RS03055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS03060 PF08279 HTH domain SCI_RS03060 PF00874 PRD domain SCI_RS03060 PF05043 Mga helix-turn-helix domain SCI_RS03060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SCI_RS03065 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SCI_RS03075 PF02378 Phosphotransferase system, EIIC SCI_RS03085 PF01432 Peptidase family M3 SCI_RS03085 PF08439 Oligopeptidase F SCI_RS03090 PF01596 O-methyltransferase SCI_RS03095 PF13145 PPIC-type PPIASE domain SCI_RS03110 PF02272 DHHA1 domain SCI_RS03110 PF01411 tRNA synthetases class II (A) SCI_RS03110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SCI_RS03115 PF00664 ABC transporter transmembrane region SCI_RS03115 PF00005 ABC transporter SCI_RS03125 PF01381 Helix-turn-helix SCI_RS03135 PF02388 FemAB family SCI_RS03145 PF01966 HD domain SCI_RS03155 PF00689 Cation transporting ATPase, C-terminus SCI_RS03155 PF00690 Cation transporter/ATPase, N-terminus SCI_RS03170 PF00472 RF-1 domain SCI_RS03170 PF03462 PCRF domain SCI_RS03175 PF00005 ABC transporter SCI_RS03180 PF02687 FtsX-like permease family SCI_RS03180 PF18075 FtsX extracellular domain SCI_RS03185 PF00753 Metallo-beta-lactamase superfamily SCI_RS03190 PF04851 Type III restriction enzyme, res subunit SCI_RS03190 PF00929 Exonuclease SCI_RS03190 PF13307 Helicase C-terminal domain SCI_RS03195 PF03601 Conserved hypothetical protein 698 SCI_RS03200 PF01098 Cell cycle protein SCI_RS03205 PF01965 DJ-1/PfpI family SCI_RS03215 PF00204 DNA gyrase B SCI_RS03215 PF00986 DNA gyrase B subunit, carboxyl terminus SCI_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS03215 PF01751 Toprim domain SCI_RS03220 PF06160 Septation ring formation regulator, EzrA SCI_RS03225 PF10282 Lactonase, 7-bladed beta-propeller SCI_RS03230 PF00486 Transcriptional regulatory protein, C terminal SCI_RS03230 PF00072 Response regulator receiver domain SCI_RS03235 PF00512 His Kinase A (phospho-acceptor) domain SCI_RS03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS03235 PF00672 HAMP domain SCI_RS03240 PF01594 AI-2E family transporter SCI_RS03250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SCI_RS03250 PF00205 Thiamine pyrophosphate enzyme, central domain SCI_RS03250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SCI_RS03255 PF03306 Alpha-acetolactate decarboxylase SCI_RS03260 PF05670 NFACT protein RNA binding domain SCI_RS03275 PF09383 NIL domain SCI_RS03275 PF00005 ABC transporter SCI_RS03285 PF02229 Transcriptional Coactivator p15 (PC4) SCI_RS03290 PF00005 ABC transporter SCI_RS03290 PF13732 Domain of unknown function (DUF4162) SCI_RS03300 PF12705 PD-(D/E)XK nuclease superfamily SCI_RS03305 PF13361 UvrD-like helicase C-terminal domain SCI_RS03305 PF12705 PD-(D/E)XK nuclease superfamily SCI_RS03305 PF00580 UvrD/REP helicase N-terminal domain SCI_RS03310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SCI_RS03310 PF02806 Alpha amylase, C-terminal all-beta domain SCI_RS03310 PF00128 Alpha amylase, catalytic domain SCI_RS03315 PF00483 Nucleotidyl transferase SCI_RS03315 PF00132 Bacterial transferase hexapeptide (six repeats) SCI_RS03320 PF00483 Nucleotidyl transferase SCI_RS03325 PF08323 Starch synthase catalytic domain SCI_RS03325 PF00534 Glycosyl transferases group 1 SCI_RS03330 PF00343 Carbohydrate phosphorylase SCI_RS03340 PF00137 ATP synthase subunit C SCI_RS03345 PF00119 ATP synthase A chain SCI_RS03350 PF00430 ATP synthase B/B' CF(0) SCI_RS03355 PF00213 ATP synthase delta (OSCP) subunit SCI_RS03360 PF00306 ATP synthase alpha/beta chain, C terminal domain SCI_RS03360 PF02874 ATP synthase alpha/beta family, beta-barrel domain SCI_RS03360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SCI_RS03365 PF00231 ATP synthase SCI_RS03370 PF02874 ATP synthase alpha/beta family, beta-barrel domain SCI_RS03370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SCI_RS03375 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SCI_RS03375 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SCI_RS03380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SCI_RS03390 PF01223 DNA/RNA non-specific endonuclease SCI_RS03395 PF00005 ABC transporter SCI_RS03395 PF00664 ABC transporter transmembrane region SCI_RS03400 PF00664 ABC transporter transmembrane region SCI_RS03400 PF00005 ABC transporter SCI_RS03415 PF03788 LrgA family SCI_RS03420 PF04172 LrgB-like family SCI_RS03425 PF00156 Phosphoribosyl transferase domain SCI_RS03435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SCI_RS03435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SCI_RS03435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SCI_RS03435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SCI_RS03440 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS03445 PF11838 ERAP1-like C-terminal domain SCI_RS03445 PF01433 Peptidase family M1 domain SCI_RS03450 PF08220 DeoR-like helix-turn-helix domain SCI_RS03450 PF00455 DeoR C terminal sensor domain SCI_RS03455 PF00294 pfkB family carbohydrate kinase SCI_RS03460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SCI_RS03460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS03470 PF02645 Uncharacterised protein, DegV family COG1307 SCI_RS03475 PF13735 tRNA nucleotidyltransferase domain 2 putative SCI_RS03475 PF01743 Poly A polymerase head domain SCI_RS03475 PF12627 Probable RNA and SrmB- binding site of polymerase A SCI_RS03480 PF12848 ABC transporter SCI_RS03480 PF00005 ABC transporter SCI_RS03480 PF16326 ABC transporter C-terminal domain SCI_RS03485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SCI_RS03485 PF01409 tRNA synthetases class II core domain (F) SCI_RS03490 PF13673 Acetyltransferase (GNAT) domain SCI_RS03495 PF03483 B3/4 domain SCI_RS03495 PF03484 tRNA synthetase B5 domain SCI_RS03495 PF03147 Ferredoxin-fold anticodon binding domain SCI_RS03495 PF01588 Putative tRNA binding domain SCI_RS03495 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SCI_RS03510 PF02632 BioY family SCI_RS03520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SCI_RS03520 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS03525 PF12704 MacB-like periplasmic core domain SCI_RS03525 PF02687 FtsX-like permease family SCI_RS03535 PF16360 GTP-binding GTPase Middle Region SCI_RS03535 PF13167 GTP-binding GTPase N-terminal SCI_RS03535 PF01926 50S ribosome-binding GTPase SCI_RS03545 PF00753 Metallo-beta-lactamase superfamily SCI_RS03545 PF12706 Beta-lactamase superfamily domain SCI_RS03555 PF00106 short chain dehydrogenase SCI_RS03570 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SCI_RS03570 PF17768 RecJ OB domain SCI_RS03570 PF02272 DHHA1 domain SCI_RS03570 PF01368 DHH family SCI_RS03580 PF00005 ABC transporter SCI_RS03585 PF00392 Bacterial regulatory proteins, gntR family SCI_RS03590 PF07733 Bacterial DNA polymerase III alpha NTPase domain SCI_RS03590 PF01336 OB-fold nucleic acid binding domain SCI_RS03590 PF02811 PHP domain SCI_RS03590 PF14579 Helix-hairpin-helix motif SCI_RS03590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SCI_RS03595 PF00365 Phosphofructokinase SCI_RS03600 PF02887 Pyruvate kinase, alpha/beta domain SCI_RS03600 PF00224 Pyruvate kinase, barrel domain SCI_RS03605 PF10502 Signal peptidase, peptidase S26 SCI_RS03610 PF16916 Dimerisation domain of Zinc Transporter SCI_RS03610 PF01545 Cation efflux family SCI_RS03615 PF00580 UvrD/REP helicase N-terminal domain SCI_RS03615 PF13361 UvrD-like helicase C-terminal domain SCI_RS03635 PF16198 tRNA pseudouridylate synthase B C-terminal domain SCI_RS03635 PF01509 TruB family pseudouridylate synthase (N terminal domain) SCI_RS03640 PF01687 Riboflavin kinase SCI_RS03640 PF06574 FAD synthetase SCI_RS03645 PF03960 ArsC family SCI_RS03650 PF05256 Uncharacterised protein family (UPF0223) SCI_RS03655 PF00459 Inositol monophosphatase family SCI_RS03660 PF01189 16S rRNA methyltransferase RsmB/F SCI_RS03660 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SCI_RS03660 PF17126 RsmF rRNA methyltransferase first C-terminal domain SCI_RS03665 PF12849 PBP superfamily domain SCI_RS03670 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS03675 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS03680 PF00005 ABC transporter SCI_RS03685 PF00005 ABC transporter SCI_RS03690 PF01895 PhoU domain SCI_RS03695 PF04002 RadC-like JAB domain SCI_RS03700 PF07722 Peptidase C26 SCI_RS03705 PF02629 CoA binding domain SCI_RS03705 PF06971 Putative DNA-binding protein N-terminus SCI_RS03715 PF00266 Aminotransferase class-V SCI_RS03720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SCI_RS03720 PF14572 Phosphoribosyl synthetase-associated domain SCI_RS03730 PF04607 Region found in RelA / SpoT proteins SCI_RS03735 PF01513 ATP-NAD kinase SCI_RS03740 PF00849 RNA pseudouridylate synthase SCI_RS03745 PF01515 Phosphate acetyl/butaryl transferase SCI_RS03750 PF14815 NUDIX domain SCI_RS03750 PF00730 HhH-GPD superfamily base excision DNA repair protein SCI_RS03760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SCI_RS03760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SCI_RS03760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SCI_RS03760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SCI_RS03765 PF12822 ECF transporter, substrate-specific component SCI_RS03770 PF02441 Flavoprotein SCI_RS03780 PF01268 Formate--tetrahydrofolate ligase SCI_RS03800 PF02774 Semialdehyde dehydrogenase, dimerisation domain SCI_RS03800 PF01118 Semialdehyde dehydrogenase, NAD binding domain SCI_RS03815 PF00466 Ribosomal protein L10 SCI_RS03820 PF00542 Ribosomal protein L7/L12 C-terminal domain SCI_RS03820 PF16320 Ribosomal protein L7/L12 dimerisation domain SCI_RS03825 PF05239 PRC-barrel domain SCI_RS03825 PF01782 RimM N-terminal domain SCI_RS03830 PF01746 tRNA (Guanine-1)-methyltransferase SCI_RS03835 PF01297 Zinc-uptake complex component A periplasmic SCI_RS03835 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SCI_RS03850 PF13185 GAF domain SCI_RS03855 PF12169 DNA polymerase III subunits gamma and tau domain III SCI_RS03865 PF02237 Biotin protein ligase C terminal domain SCI_RS03865 PF08279 HTH domain SCI_RS03865 PF03099 Biotin/lipoate A/B protein ligase family SCI_RS03870 PF00356 Bacterial regulatory proteins, lacI family SCI_RS03875 PF00288 GHMP kinases N terminal domain SCI_RS03875 PF08544 GHMP kinases C terminal SCI_RS03875 PF10509 Galactokinase galactose-binding signature SCI_RS03880 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SCI_RS03880 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SCI_RS03890 PF09269 Domain of unknown function (DUF1967) SCI_RS03890 PF01018 GTP1/OBG SCI_RS03890 PF01926 50S ribosome-binding GTPase SCI_RS03900 PF01522 Polysaccharide deacetylase SCI_RS03905 PF00742 Homoserine dehydrogenase SCI_RS03905 PF03447 Homoserine dehydrogenase, NAD binding domain SCI_RS03910 PF00288 GHMP kinases N terminal domain SCI_RS03910 PF08544 GHMP kinases C terminal SCI_RS03920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS03920 PF02378 Phosphotransferase system, EIIC SCI_RS03930 PF07690 Major Facilitator Superfamily SCI_RS03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SCI_RS03935 PF03466 LysR substrate binding domain SCI_RS03945 PF01180 Dihydroorotate dehydrogenase SCI_RS03950 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SCI_RS03960 PF00156 Phosphoribosyl transferase domain SCI_RS03965 PF06855 YozE SAM-like fold SCI_RS03970 PF02562 PhoH-like protein SCI_RS03990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SCI_RS03990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SCI_RS04005 PF04205 FMN-binding domain SCI_RS04005 PF00890 FAD binding domain SCI_RS04005 PF03358 NADPH-dependent FMN reductase SCI_RS04010 PF00005 ABC transporter SCI_RS04010 PF00664 ABC transporter transmembrane region SCI_RS04015 PF00005 ABC transporter SCI_RS04015 PF00664 ABC transporter transmembrane region SCI_RS04020 PF02130 Uncharacterized protein family UPF0054 SCI_RS04025 PF01219 Prokaryotic diacylglycerol kinase SCI_RS04030 PF01926 50S ribosome-binding GTPase SCI_RS04030 PF07650 KH domain SCI_RS04060 PF18543 Intracellular delivery domain SCI_RS04060 PF02661 Fic/DOC family SCI_RS04065 PF01381 Helix-turn-helix SCI_RS04065 PF00145 C-5 cytosine-specific DNA methylase SCI_RS04090 PF18652 Adhesin P1 N-terminal domain SCI_RS04090 PF06696 Streptococcal surface antigen repeat SCI_RS04090 PF08363 Glucan-binding protein C SCI_RS04090 PF16364 Cell surface antigen C-terminus SCI_RS04090 PF17998 Cell surface antigen I/II C2 terminal domain SCI_RS04120 PF01476 LysM domain SCI_RS04120 PF05257 CHAP domain SCI_RS04130 PF00436 Single-strand binding protein family SCI_RS04165 PF01131 DNA topoisomerase SCI_RS04165 PF01751 Toprim domain SCI_RS04190 PF03432 Relaxase/Mobilisation nuclease domain SCI_RS04195 PF01555 DNA methylase SCI_RS04205 PF00501 AMP-binding enzyme SCI_RS04205 PF13193 AMP-binding enzyme C-terminal domain SCI_RS04210 PF00550 Phosphopantetheine attachment site SCI_RS04220 PF08264 Anticodon-binding domain of tRNA SCI_RS04220 PF00133 tRNA synthetases class I (I, L, M and V) SCI_RS04220 PF10458 Valyl tRNA synthetase tRNA binding arm SCI_RS04240 PF00535 Glycosyl transferase family 2 SCI_RS04250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SCI_RS04250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SCI_RS04250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SCI_RS04255 PF00005 ABC transporter SCI_RS04270 PF01381 Helix-turn-helix SCI_RS04330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SCI_RS04330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SCI_RS04330 PF06827 Zinc finger found in FPG and IleRS SCI_RS04335 PF01121 Dephospho-CoA kinase SCI_RS04340 PF07690 Major Facilitator Superfamily SCI_RS04340 PF00083 Sugar (and other) transporter SCI_RS04350 PF17876 Cold shock domain SCI_RS04350 PF08206 Ribonuclease B OB domain SCI_RS04350 PF00773 RNB domain SCI_RS04350 PF00575 S1 RNA binding domain SCI_RS04355 PF01668 SmpB protein SCI_RS04365 PF13567 Domain of unknown function (DUF4131) SCI_RS04365 PF00753 Metallo-beta-lactamase superfamily SCI_RS04365 PF03772 Competence protein SCI_RS04375 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SCI_RS04375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SCI_RS04380 PF03167 Uracil DNA glycosylase superfamily SCI_RS04385 PF00293 NUDIX domain SCI_RS04390 PF01979 Amidohydrolase family SCI_RS04395 PF00438 S-adenosylmethionine synthetase, N-terminal domain SCI_RS04395 PF02772 S-adenosylmethionine synthetase, central domain SCI_RS04395 PF02773 S-adenosylmethionine synthetase, C-terminal domain SCI_RS04400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SCI_RS04410 PF07085 DRTGG domain SCI_RS04410 PF00571 CBS domain SCI_RS04410 PF03061 Thioesterase superfamily SCI_RS04410 PF00392 Bacterial regulatory proteins, gntR family SCI_RS04415 PF00557 Metallopeptidase family M24 SCI_RS04425 PF01047 MarR family SCI_RS04435 PF04138 GtrA-like protein SCI_RS04440 PF06177 QueT transporter SCI_RS04450 PF02558 Ketopantoate reductase PanE/ApbA SCI_RS04450 PF08546 Ketopantoate reductase PanE/ApbA C terminal SCI_RS04455 PF01653 NAD-dependent DNA ligase adenylation domain SCI_RS04455 PF00533 BRCA1 C Terminus (BRCT) domain SCI_RS04455 PF03120 NAD-dependent DNA ligase OB-fold domain SCI_RS04455 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SCI_RS04455 PF12826 Helix-hairpin-helix motif SCI_RS04460 PF00781 Diacylglycerol kinase catalytic domain SCI_RS04465 PF17999 Pullulanase N1-terminal domain SCI_RS04465 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SCI_RS04465 PF00128 Alpha amylase, catalytic domain SCI_RS04470 PF00886 Ribosomal protein S16 SCI_RS04480 PF02829 3H domain SCI_RS04480 PF08279 HTH domain SCI_RS04495 PF03932 CutC family SCI_RS04500 PF04237 YjbR SCI_RS04510 PF00005 ABC transporter SCI_RS04510 PF00664 ABC transporter transmembrane region SCI_RS04515 PF00392 Bacterial regulatory proteins, gntR family SCI_RS04515 PF00155 Aminotransferase class I and II SCI_RS04530 PF01165 Ribosomal protein S21 SCI_RS04535 PF01741 Large-conductance mechanosensitive channel, MscL SCI_RS04540 PF10410 DnaB-helicase binding domain of primase SCI_RS04540 PF01807 CHC2 zinc finger SCI_RS04540 PF08275 DNA primase catalytic core, N-terminal domain SCI_RS04545 PF04545 Sigma-70, region 4 SCI_RS04545 PF04539 Sigma-70 region 3 SCI_RS04545 PF04542 Sigma-70 region 2 SCI_RS04545 PF00140 Sigma-70 factor, region 1.2 SCI_RS04545 PF03979 Sigma-70 factor, region 1.1 SCI_RS04550 PF01883 Iron-sulfur cluster assembly protein SCI_RS04555 PF05525 Branched-chain amino acid transport protein SCI_RS04560 PF02683 Cytochrome C biogenesis protein transmembrane region SCI_RS04565 PF08534 Redoxin SCI_RS04570 PF01641 SelR domain SCI_RS04570 PF01625 Peptide methionine sulfoxide reductase SCI_RS04575 PF12833 Helix-turn-helix domain SCI_RS04575 PF00072 Response regulator receiver domain SCI_RS04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS04580 PF06580 Histidine kinase SCI_RS04580 PF02743 Cache domain SCI_RS04580 PF00672 HAMP domain SCI_RS04595 PF00005 ABC transporter SCI_RS04605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SCI_RS04605 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS04610 PF00654 Voltage gated chloride channel SCI_RS04615 PF00478 IMP dehydrogenase / GMP reductase domain SCI_RS04620 PF01554 MatE SCI_RS04625 PF01361 Tautomerase enzyme SCI_RS04630 PF00265 Thymidine kinase SCI_RS04635 PF03462 PCRF domain SCI_RS04635 PF00472 RF-1 domain SCI_RS04640 PF05175 Methyltransferase small domain SCI_RS04645 PF01300 Telomere recombination SCI_RS04650 PF00464 Serine hydroxymethyltransferase SCI_RS04720 PF00117 Glutamine amidotransferase class-I SCI_RS04720 PF00958 GMP synthase C terminal domain SCI_RS04720 PF02540 NAD synthase SCI_RS04725 PF00392 Bacterial regulatory proteins, gntR family SCI_RS04725 PF07702 UTRA domain SCI_RS04730 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SCI_RS04735 PF02978 Signal peptide binding domain SCI_RS04735 PF00448 SRP54-type protein, GTPase domain SCI_RS04735 PF02881 SRP54-type protein, helical bundle domain SCI_RS04740 PF00589 Phage integrase family SCI_RS04745 PF03099 Biotin/lipoate A/B protein ligase family SCI_RS04745 PF10437 Bacterial lipoate protein ligase C-terminus SCI_RS04750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SCI_RS04750 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS04755 PF00364 Biotin-requiring enzyme SCI_RS04755 PF02817 e3 binding domain SCI_RS04755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SCI_RS04760 PF02780 Transketolase, C-terminal domain SCI_RS04760 PF02779 Transketolase, pyrimidine binding domain SCI_RS04765 PF00676 Dehydrogenase E1 component SCI_RS04785 PF01134 Glucose inhibited division protein A SCI_RS04790 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SCI_RS04795 PF01751 Toprim domain SCI_RS04795 PF01131 DNA topoisomerase SCI_RS04795 PF01396 Topoisomerase DNA binding C4 zinc finger SCI_RS04800 PF18255 DNA processing protein A sterile alpha motif domain SCI_RS04800 PF02481 DNA recombination-mediator protein A SCI_RS04805 PF00132 Bacterial transferase hexapeptide (six repeats) SCI_RS04805 PF12464 Maltose acetyltransferase SCI_RS04810 PF01351 Ribonuclease HII SCI_RS04815 PF01926 50S ribosome-binding GTPase SCI_RS04820 PF00753 Metallo-beta-lactamase superfamily SCI_RS04835 PF03466 LysR substrate binding domain SCI_RS04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SCI_RS04840 PF01144 Coenzyme A transferase SCI_RS04845 PF01144 Coenzyme A transferase SCI_RS04850 PF00378 Enoyl-CoA hydratase/isomerase SCI_RS04855 PF00108 Thiolase, N-terminal domain SCI_RS04855 PF02803 Thiolase, C-terminal domain SCI_RS04860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SCI_RS04860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SCI_RS04865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SCI_RS04865 PF02770 Acyl-CoA dehydrogenase, middle domain SCI_RS04865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SCI_RS04870 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS04870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SCI_RS04875 PF04203 Sortase domain SCI_RS04880 PF00521 DNA gyrase/topoisomerase IV, subunit A SCI_RS04880 PF03989 DNA gyrase C-terminal domain, beta-propeller SCI_RS04885 PF00056 lactate/malate dehydrogenase, NAD binding domain SCI_RS04885 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SCI_RS04900 PF00575 S1 RNA binding domain SCI_RS04925 PF03989 DNA gyrase C-terminal domain, beta-propeller SCI_RS04925 PF00521 DNA gyrase/topoisomerase IV, subunit A SCI_RS04930 PF04439 Streptomycin adenylyltransferase SCI_RS04935 PF02661 Fic/DOC family SCI_RS04950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS04950 PF01751 Toprim domain SCI_RS04950 PF00986 DNA gyrase B subunit, carboxyl terminus SCI_RS04950 PF00204 DNA gyrase B SCI_RS04955 PF02660 Glycerol-3-phosphate acyltransferase SCI_RS04965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SCI_RS04970 PF00440 Bacterial regulatory proteins, tetR family SCI_RS04970 PF16295 Tetracyclin repressor-like, C-terminal domain SCI_RS04975 PF02645 Uncharacterised protein, DegV family COG1307 SCI_RS04990 PF02146 Sir2 family SCI_RS04995 PF03952 Enolase, N-terminal domain SCI_RS04995 PF00113 Enolase, C-terminal TIM barrel domain SCI_RS05015 PF07690 Major Facilitator Superfamily SCI_RS05020 PF01336 OB-fold nucleic acid binding domain SCI_RS05020 PF00152 tRNA synthetases class II (D, K and N) SCI_RS05030 PF00155 Aminotransferase class I and II SCI_RS05040 PF01047 MarR family SCI_RS05045 PF03358 NADPH-dependent FMN reductase SCI_RS05050 PF03883 Peroxide stress protein YaaA SCI_RS05060 PF03006 Haemolysin-III related SCI_RS05065 PF02653 Branched-chain amino acid transport system / permease component SCI_RS05070 PF02653 Branched-chain amino acid transport system / permease component SCI_RS05075 PF00005 ABC transporter SCI_RS05080 PF02608 ABC transporter substrate-binding protein PnrA-like SCI_RS05085 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SCI_RS05090 PF01791 DeoC/LacD family aldolase SCI_RS05095 PF00591 Glycosyl transferase family, a/b domain SCI_RS05095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SCI_RS05095 PF02885 Glycosyl transferase family, helical bundle domain SCI_RS05100 PF05175 Methyltransferase small domain SCI_RS05105 PF00485 Phosphoribulokinase / Uridine kinase family SCI_RS05110 PF01649 Ribosomal protein S20 SCI_RS05125 PF00128 Alpha amylase, catalytic domain SCI_RS05125 PF09154 Domain of unknown function (DUF1939) SCI_RS05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS05130 PF00512 His Kinase A (phospho-acceptor) domain SCI_RS05135 PF00486 Transcriptional regulatory protein, C terminal SCI_RS05135 PF00072 Response regulator receiver domain SCI_RS05155 PF01245 Ribosomal protein L19 SCI_RS05160 PF00480 ROK family SCI_RS05165 PF02142 MGS-like domain SCI_RS05165 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SCI_RS05165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SCI_RS05170 PF00117 Glutamine amidotransferase class-I SCI_RS05170 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SCI_RS05175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SCI_RS05175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SCI_RS05180 PF00860 Permease family SCI_RS05185 PF00156 Phosphoribosyl transferase domain SCI_RS05195 PF14527 WhiA LAGLIDADG-like domain SCI_RS05195 PF02650 WhiA C-terminal HTH domain SCI_RS05195 PF10298 WhiA N-terminal LAGLIDADG-like domain SCI_RS05200 PF01933 Uncharacterised protein family UPF0052 SCI_RS05205 PF03668 P-loop ATPase protein family SCI_RS05210 PF00334 Nucleoside diphosphate kinase SCI_RS05225 PF13344 Haloacid dehalogenase-like hydrolase SCI_RS05240 PF06969 HemN C-terminal domain SCI_RS05240 PF04055 Radical SAM superfamily SCI_RS05250 PF00583 Acetyltransferase (GNAT) family SCI_RS05255 PF02151 UvrB/uvrC motif SCI_RS05255 PF04851 Type III restriction enzyme, res subunit SCI_RS05255 PF12344 Ultra-violet resistance protein B SCI_RS05255 PF00271 Helicase conserved C-terminal domain SCI_RS05255 PF17757 UvrB interaction domain SCI_RS05260 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS05265 PF00005 ABC transporter SCI_RS05270 PF12848 ABC transporter SCI_RS05270 PF00005 ABC transporter SCI_RS05275 PF00005 ABC transporter SCI_RS05275 PF00664 ABC transporter transmembrane region SCI_RS05280 PF00664 ABC transporter transmembrane region SCI_RS05280 PF00005 ABC transporter SCI_RS05290 PF01476 LysM domain SCI_RS05290 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SCI_RS05295 PF01926 50S ribosome-binding GTPase SCI_RS05300 PF10431 C-terminal, D2-small domain, of ClpB protein SCI_RS05300 PF06689 ClpX C4-type zinc finger SCI_RS05300 PF07724 AAA domain (Cdc48 subfamily) SCI_RS05310 PF00186 Dihydrofolate reductase SCI_RS05320 PF00303 Thymidylate synthase SCI_RS05325 PF00654 Voltage gated chloride channel SCI_RS05350 PF08274 PhnA Zinc-Ribbon SCI_RS05350 PF03831 PhnA domain SCI_RS05355 PF00849 RNA pseudouridylate synthase SCI_RS05355 PF01479 S4 domain SCI_RS05360 PF01252 Signal peptidase (SPase) II SCI_RS05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SCI_RS05365 PF03466 LysR substrate binding domain SCI_RS05375 PF02583 Metal-sensitive transcriptional repressor SCI_RS05385 PF17773 UPF0176 acylphosphatase like domain SCI_RS05385 PF12368 Rhodanase C-terminal SCI_RS05385 PF00581 Rhodanese-like domain SCI_RS05390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SCI_RS05390 PF07992 Pyridine nucleotide-disulphide oxidoreductase SCI_RS05395 PF01206 Sulfurtransferase TusA SCI_RS05395 PF00581 Rhodanese-like domain SCI_RS05410 PF01016 Ribosomal L27 protein SCI_RS05420 PF00829 Ribosomal prokaryotic L21 protein SCI_RS05425 PF02926 THUMP domain SCI_RS05425 PF02568 Thiamine biosynthesis protein (ThiI) SCI_RS05430 PF00266 Aminotransferase class-V SCI_RS05435 PF06874 Firmicute fructose-1,6-bisphosphatase SCI_RS05440 PF03618 Kinase/pyrophosphorylase SCI_RS05445 PF00571 CBS domain SCI_RS05445 PF08279 HTH domain SCI_RS05450 PF00391 PEP-utilising enzyme, mobile domain SCI_RS05450 PF02896 PEP-utilising enzyme, TIM barrel domain SCI_RS05450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SCI_RS05460 PF13416 Bacterial extracellular solute-binding protein SCI_RS05465 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS05470 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS05475 PF08402 TOBE domain SCI_RS05475 PF00005 ABC transporter SCI_RS05480 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SCI_RS05480 PF01565 FAD binding domain SCI_RS05490 PF00009 Elongation factor Tu GTP binding domain SCI_RS05490 PF00679 Elongation factor G C-terminus SCI_RS05490 PF03144 Elongation factor Tu domain 2 SCI_RS05490 PF06421 GTP-binding protein LepA C-terminus SCI_RS05500 PF01546 Peptidase family M20/M25/M40 SCI_RS05500 PF07687 Peptidase dimerisation domain SCI_RS05510 PF00485 Phosphoribulokinase / Uridine kinase family SCI_RS05515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SCI_RS05515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SCI_RS05520 PF00270 DEAD/DEAH box helicase SCI_RS05520 PF00271 Helicase conserved C-terminal domain SCI_RS05525 PF00453 Ribosomal protein L20 SCI_RS05530 PF01632 Ribosomal protein L35 SCI_RS05535 PF05198 Translation initiation factor IF-3, N-terminal domain SCI_RS05535 PF00707 Translation initiation factor IF-3, C-terminal domain SCI_RS05540 PF02224 Cytidylate kinase SCI_RS05565 PF02595 Glycerate kinase family SCI_RS05575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SCI_RS05575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SCI_RS05575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SCI_RS05575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SCI_RS05585 PF02457 DisA bacterial checkpoint controller nucleotide-binding SCI_RS05590 PF08245 Mur ligase middle domain SCI_RS05590 PF08353 Domain of unknown function (DUF1727) SCI_RS05595 PF07685 CobB/CobQ-like glutamine amidotransferase domain SCI_RS05605 PF12848 ABC transporter SCI_RS05605 PF16326 ABC transporter C-terminal domain SCI_RS05605 PF00005 ABC transporter SCI_RS05625 PF00753 Metallo-beta-lactamase superfamily SCI_RS05625 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SCI_RS05625 PF17770 Ribonuclease J C-terminal domain SCI_RS05630 PF01136 Peptidase family U32 SCI_RS05630 PF16325 Peptidase family U32 C-terminal domain SCI_RS05645 PF12732 YtxH-like protein SCI_RS05655 PF01790 Prolipoprotein diacylglyceryl transferase SCI_RS05660 PF02603 HPr Serine kinase N terminus SCI_RS05660 PF07475 HPr Serine kinase C-terminal domain SCI_RS05665 PF00293 NUDIX domain SCI_RS05675 PF10263 SprT-like family SCI_RS05680 PF09371 Tex-like protein N-terminal domain SCI_RS05680 PF00575 S1 RNA binding domain SCI_RS05680 PF17674 HHH domain SCI_RS05680 PF16921 Tex protein YqgF-like domain SCI_RS05685 PF03773 Predicted permease SCI_RS05690 PF09323 Domain of unknown function (DUF1980) SCI_RS05695 PF07690 Major Facilitator Superfamily SCI_RS05700 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SCI_RS05700 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SCI_RS05705 PF02881 SRP54-type protein, helical bundle domain SCI_RS05705 PF00448 SRP54-type protein, GTPase domain SCI_RS05740 PF08460 Bacterial SH3 domain SCI_RS05740 PF01520 N-acetylmuramoyl-L-alanine amidase SCI_RS05740 PF05257 CHAP domain SCI_RS05745 PF05105 Bacteriophage holin family SCI_RS05810 PF00574 Clp protease SCI_RS05815 PF04860 Phage portal protein SCI_RS05840 PF00145 C-5 cytosine-specific DNA methylase SCI_RS05845 PF01555 DNA methylase SCI_RS05905 PF00476 DNA polymerase family A SCI_RS05905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SCI_RS05905 PF01367 5'-3' exonuclease, C-terminal SAM fold SCI_RS05905 PF01612 3'-5' exonuclease SCI_RS05910 PF13958 Toxin ToxN, type III toxin-antitoxin system SCI_RS05945 PF00501 AMP-binding enzyme SCI_RS05945 PF00550 Phosphopantetheine attachment site SCI_RS05945 PF00668 Condensation domain SCI_RS05945 PF13193 AMP-binding enzyme C-terminal domain SCI_RS05960 PF06470 SMC proteins Flexible Hinge Domain SCI_RS05960 PF02463 RecF/RecN/SMC N terminal domain SCI_RS05965 PF00035 Double-stranded RNA binding motif SCI_RS05965 PF14622 Ribonuclease-III-like SCI_RS05970 PF00753 Metallo-beta-lactamase superfamily SCI_RS05975 PF00672 HAMP domain SCI_RS05975 PF00512 His Kinase A (phospho-acceptor) domain SCI_RS05975 PF13426 PAS domain SCI_RS05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS05980 PF00072 Response regulator receiver domain SCI_RS05980 PF00486 Transcriptional regulatory protein, C terminal SCI_RS05990 PF13439 Glycosyltransferase Family 4 SCI_RS05990 PF00534 Glycosyl transferases group 1 SCI_RS05995 PF00534 Glycosyl transferases group 1 SCI_RS05995 PF13439 Glycosyltransferase Family 4 SCI_RS06000 PF00356 Bacterial regulatory proteins, lacI family SCI_RS06005 PF00557 Metallopeptidase family M24 SCI_RS06005 PF01321 Creatinase/Prolidase N-terminal domain SCI_RS06010 PF00398 Ribosomal RNA adenine dimethylase SCI_RS06015 PF16363 GDP-mannose 4,6 dehydratase SCI_RS06020 PF16363 GDP-mannose 4,6 dehydratase SCI_RS06025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SCI_RS06030 PF00483 Nucleotidyl transferase SCI_RS06035 PF00293 NUDIX domain SCI_RS06040 PF01266 FAD dependent oxidoreductase SCI_RS06050 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SCI_RS06065 PF05045 Rhamnan synthesis protein F SCI_RS06070 PF00535 Glycosyl transferase family 2 SCI_RS06075 PF14524 Wzt C-terminal domain SCI_RS06075 PF00005 ABC transporter SCI_RS06085 PF00535 Glycosyl transferase family 2 SCI_RS06095 PF04321 RmlD substrate binding domain SCI_RS06100 PF00535 Glycosyl transferase family 2 SCI_RS06110 PF00534 Glycosyl transferases group 1 SCI_RS06125 PF00535 Glycosyl transferase family 2 SCI_RS06175 PF07508 Recombinase SCI_RS06175 PF13408 Recombinase zinc beta ribbon domain SCI_RS06195 PF05105 Bacteriophage holin family SCI_RS06285 PF00574 Clp protease SCI_RS06295 PF13411 MerR HTH family regulatory protein SCI_RS06295 PF07739 TipAS antibiotic-recognition domain SCI_RS06300 PF03354 Phage Terminase SCI_RS06325 PF00145 C-5 cytosine-specific DNA methylase SCI_RS06330 PF01555 DNA methylase SCI_RS06335 PF02773 S-adenosylmethionine synthetase, C-terminal domain SCI_RS06335 PF00438 S-adenosylmethionine synthetase, N-terminal domain SCI_RS06335 PF02772 S-adenosylmethionine synthetase, central domain SCI_RS06410 PF00196 Bacterial regulatory proteins, luxR family SCI_RS06410 PF04542 Sigma-70 region 2 SCI_RS06430 PF13166 AAA domain SCI_RS06450 PF02086 D12 class N6 adenine-specific DNA methyltransferase SCI_RS06455 PF02086 D12 class N6 adenine-specific DNA methyltransferase SCI_RS06475 PF00239 Resolvase, N terminal domain SCI_RS06475 PF02796 Helix-turn-helix domain of resolvase SCI_RS06490 PF00239 Resolvase, N terminal domain SCI_RS06490 PF02796 Helix-turn-helix domain of resolvase SCI_RS06500 PF03432 Relaxase/Mobilisation nuclease domain SCI_RS06505 PF00082 Subtilase family SCI_RS06510 PF00004 ATPase family associated with various cellular activities (AAA) SCI_RS06535 PF01751 Toprim domain SCI_RS06535 PF01131 DNA topoisomerase SCI_RS06560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SCI_RS06625 PF01443 Viral (Superfamily 1) RNA helicase SCI_RS06625 PF03389 MobA/MobL family SCI_RS06625 PF17841 BID domain of Bartonella effector protein (Bep) SCI_RS06640 PF00005 ABC transporter SCI_RS06640 PF00664 ABC transporter transmembrane region SCI_RS06645 PF00005 ABC transporter SCI_RS06645 PF00664 ABC transporter transmembrane region SCI_RS06645 PF04954 Siderophore-interacting protein SCI_RS06645 PF08021 Siderophore-interacting FAD-binding domain SCI_RS06650 PF00005 ABC transporter SCI_RS06665 PF00440 Bacterial regulatory proteins, tetR family SCI_RS06665 PF08361 MAATS-type transcriptional repressor, C-terminal region SCI_RS06695 PF01443 Viral (Superfamily 1) RNA helicase SCI_RS06695 PF03389 MobA/MobL family SCI_RS06695 PF17841 BID domain of Bartonella effector protein (Bep) SCI_RS06720 PF01695 IstB-like ATP binding protein SCI_RS06735 PF05958 tRNA (Uracil-5-)-methyltransferase SCI_RS06740 PF03816 Cell envelope-related transcriptional attenuator domain SCI_RS06745 PF00800 Prephenate dehydratase SCI_RS06750 PF01202 Shikimate kinase SCI_RS06755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SCI_RS06760 PF06133 Control of competence regulator ComK, YlbF/YmcA SCI_RS06765 PF02153 Prephenate dehydrogenase SCI_RS06775 PF01925 Sulfite exporter TauE/SafE SCI_RS06780 PF01264 Chorismate synthase SCI_RS06785 PF01761 3-dehydroquinate synthase SCI_RS06790 PF08501 Shikimate dehydrogenase substrate binding domain SCI_RS06790 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SCI_RS06795 PF01487 Type I 3-dehydroquinase SCI_RS06800 PF10672 S-adenosylmethionine-dependent methyltransferase SCI_RS06800 PF17785 PUA-like domain SCI_RS06805 PF00884 Sulfatase SCI_RS06815 PF01048 Phosphorylase superfamily SCI_RS06820 PF01048 Phosphorylase superfamily SCI_RS06825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SCI_RS06830 PF01926 50S ribosome-binding GTPase SCI_RS06830 PF10396 GTP-binding protein TrmE N-terminus SCI_RS06830 PF12631 MnmE helical domain SCI_RS06835 PF13683 Integrase core domain SCI_RS06835 PF01610 Transposase SCI_RS06850 PF00121 Triosephosphate isomerase SCI_RS06855 PF00009 Elongation factor Tu GTP binding domain SCI_RS06855 PF03144 Elongation factor Tu domain 2 SCI_RS06855 PF03143 Elongation factor Tu C-terminal domain SCI_RS06865 PF04542 Sigma-70 region 2 SCI_RS06865 PF04545 Sigma-70, region 4 SCI_RS06865 PF04539 Sigma-70 region 3 SCI_RS06870 PF00311 Phosphoenolpyruvate carboxylase SCI_RS06875 PF01098 Cell cycle protein SCI_RS06895 PF00300 Histidine phosphatase superfamily (branch 1) SCI_RS06900 PF01336 OB-fold nucleic acid binding domain SCI_RS06900 PF00152 tRNA synthetases class II (D, K and N) SCI_RS06920 PF00465 Iron-containing alcohol dehydrogenase SCI_RS06925 PF00923 Transaldolase/Fructose-6-phosphate aldolase SCI_RS06930 PF01228 Glycine radical SCI_RS06930 PF02901 Pyruvate formate lyase-like SCI_RS06935 PF02378 Phosphotransferase system, EIIC SCI_RS06945 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SCI_RS06950 PF13936 Helix-turn-helix domain SCI_RS06950 PF04198 Putative sugar-binding domain SCI_RS06955 PF08220 DeoR-like helix-turn-helix domain SCI_RS06955 PF00455 DeoR C terminal sensor domain SCI_RS06960 PF04055 Radical SAM superfamily SCI_RS06965 PF02082 Transcriptional regulator SCI_RS06980 PF00005 ABC transporter SCI_RS06980 PF02687 FtsX-like permease family SCI_RS06980 PF12704 MacB-like periplasmic core domain SCI_RS06985 PF00440 Bacterial regulatory proteins, tetR family SCI_RS06990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SCI_RS06990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SCI_RS06990 PF03129 Anticodon binding domain SCI_RS06990 PF02824 TGS domain SCI_RS07000 PF01458 Uncharacterized protein family (UPF0051) SCI_RS07005 PF00258 Flavodoxin SCI_RS07010 PF02272 DHHA1 domain SCI_RS07010 PF01368 DHH family SCI_RS07015 PF01197 Ribosomal protein L31 SCI_RS07030 PF08240 Alcohol dehydrogenase GroES-like domain SCI_RS07030 PF00107 Zinc-binding dehydrogenase SCI_RS07035 PF00005 ABC transporter SCI_RS07040 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SCI_RS07050 PF03167 Uracil DNA glycosylase superfamily SCI_RS07060 PF01546 Peptidase family M20/M25/M40 SCI_RS07065 PF00881 Nitroreductase family SCI_RS07075 PF02151 UvrB/uvrC motif SCI_RS07075 PF01541 GIY-YIG catalytic domain SCI_RS07075 PF08459 UvrC Helix-hairpin-helix N-terminal SCI_RS07080 PF02896 PEP-utilising enzyme, TIM barrel domain SCI_RS07080 PF05524 PEP-utilising enzyme, N-terminal SCI_RS07080 PF00391 PEP-utilising enzyme, mobile domain SCI_RS07085 PF00381 PTS HPr component phosphorylation site SCI_RS07090 PF00462 Glutaredoxin SCI_RS07095 PF08343 Ribonucleotide reductase N-terminal SCI_RS07095 PF02867 Ribonucleotide reductase, barrel domain SCI_RS07095 PF00317 Ribonucleotide reductase, all-alpha domain SCI_RS07105 PF00268 Ribonucleotide reductase, small chain SCI_RS07110 PF02517 CPBP intramembrane metalloprotease SCI_RS07120 PF01381 Helix-turn-helix SCI_RS07125 PF03577 Peptidase family C69 SCI_RS07135 PF01553 Acyltransferase SCI_RS07145 PF05175 Methyltransferase small domain SCI_RS07150 PF01541 GIY-YIG catalytic domain SCI_RS07160 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SCI_RS07165 PF00232 Glycosyl hydrolase family 1 SCI_RS07170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS07170 PF02378 Phosphotransferase system, EIIC SCI_RS07175 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SCI_RS07180 PF00874 PRD domain SCI_RS07180 PF03123 CAT RNA binding domain SCI_RS07185 PF00746 LPXTG cell wall anchor motif SCI_RS07185 PF00728 Glycosyl hydrolase family 20, catalytic domain SCI_RS07185 PF07501 G5 domain SCI_RS07185 PF04650 YSIRK type signal peptide SCI_RS07190 PF00294 pfkB family carbohydrate kinase SCI_RS07195 PF03611 PTS system sugar-specific permease component SCI_RS07210 PF02502 Ribose/Galactose Isomerase SCI_RS07215 PF02502 Ribose/Galactose Isomerase SCI_RS07220 PF08220 DeoR-like helix-turn-helix domain SCI_RS07220 PF00455 DeoR C terminal sensor domain SCI_RS07225 PF01791 DeoC/LacD family aldolase SCI_RS07240 PF00270 DEAD/DEAH box helicase SCI_RS07240 PF00271 Helicase conserved C-terminal domain SCI_RS07260 PF03144 Elongation factor Tu domain 2 SCI_RS07260 PF00009 Elongation factor Tu GTP binding domain SCI_RS07260 PF16658 Class II release factor RF3, C-terminal domain SCI_RS07270 PF18273 Type III R-M EcoP15I C-terminal domain SCI_RS07270 PF01555 DNA methylase SCI_RS07290 PF02875 Mur ligase family, glutamate ligase domain SCI_RS07290 PF01225 Mur ligase family, catalytic domain SCI_RS07290 PF08245 Mur ligase middle domain SCI_RS07295 PF01820 D-ala D-ala ligase N-terminus SCI_RS07295 PF07478 D-ala D-ala ligase C-terminus SCI_RS07300 PF02132 RecR protein SCI_RS07300 PF13662 Toprim domain SCI_RS07305 PF00905 Penicillin binding protein transpeptidase domain SCI_RS07305 PF03717 Penicillin-binding Protein dimerisation domain SCI_RS07315 PF01381 Helix-turn-helix SCI_RS07320 PF05973 Phage derived protein Gp49-like (DUF891) SCI_RS07395 PF00300 Histidine phosphatase superfamily (branch 1) SCI_RS07400 PF01475 Ferric uptake regulator family SCI_RS07405 PF00216 Bacterial DNA-binding protein SCI_RS07410 PF02645 Uncharacterised protein, DegV family COG1307 SCI_RS07415 PF01032 FecCD transport family SCI_RS07420 PF01032 FecCD transport family SCI_RS07425 PF00005 ABC transporter SCI_RS07430 PF01497 Periplasmic binding protein SCI_RS07435 PF00149 Calcineurin-like phosphoesterase SCI_RS07440 PF13476 AAA domain SCI_RS07445 PF02863 Arginine repressor, C-terminal domain SCI_RS07445 PF01316 Arginine repressor, DNA binding domain SCI_RS07450 PF01479 S4 domain SCI_RS07450 PF01728 FtsJ-like methyltransferase SCI_RS07455 PF00348 Polyprenyl synthetase SCI_RS07460 PF02609 Exonuclease VII small subunit SCI_RS07465 PF02601 Exonuclease VII, large subunit SCI_RS07465 PF13742 OB-fold nucleic acid binding domain SCI_RS07470 PF01256 Carbohydrate kinase SCI_RS07475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SCI_RS07475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SCI_RS07480 PF12704 MacB-like periplasmic core domain SCI_RS07480 PF02687 FtsX-like permease family SCI_RS07485 PF00005 ABC transporter SCI_RS07510 PF08796 Protein of unknown function (DUF1797) SCI_RS07515 PF17871 AAA lid domain SCI_RS07515 PF07724 AAA domain (Cdc48 subfamily) SCI_RS07515 PF00004 ATPase family associated with various cellular activities (AAA) SCI_RS07515 PF10431 C-terminal, D2-small domain, of ClpB protein SCI_RS07530 PF13280 WYL domain SCI_RS07530 PF08279 HTH domain SCI_RS07550 PF06962 Putative rRNA methylase SCI_RS07555 PF04055 Radical SAM superfamily SCI_RS07555 PF16199 Radical_SAM C-terminal domain SCI_RS07565 PF01569 PAP2 superfamily SCI_RS07570 PF12822 ECF transporter, substrate-specific component SCI_RS07575 PF00588 SpoU rRNA Methylase family SCI_RS07590 PF01809 Putative membrane protein insertion efficiency factor SCI_RS07595 PF00849 RNA pseudouridylate synthase SCI_RS07595 PF01479 S4 domain SCI_RS07600 PF04079 Segregation and condensation complex subunit ScpB SCI_RS07605 PF02616 Segregation and condensation protein ScpA SCI_RS07610 PF02899 Phage integrase, N-terminal SAM-like domain SCI_RS07610 PF00589 Phage integrase family SCI_RS07625 PF01725 Ham1 family SCI_RS07630 PF01177 Asp/Glu/Hydantoin racemase SCI_RS07635 PF03672 Uncharacterised protein family (UPF0154) SCI_RS07640 PF01027 Inhibitor of apoptosis-promoting Bax1 SCI_RS07650 PF08032 RNA 2'-O ribose methyltransferase substrate binding SCI_RS07650 PF00588 SpoU rRNA Methylase family SCI_RS07655 PF00708 Acylphosphatase SCI_RS07660 PF02096 60Kd inner membrane protein SCI_RS07665 PF13344 Haloacid dehalogenase-like hydrolase SCI_RS07665 PF00293 NUDIX domain SCI_RS07670 PF01272 Transcription elongation factor, GreA/GreB, C-term SCI_RS07670 PF03449 Transcription elongation factor, N-terminal SCI_RS07675 PF02618 YceG-like family SCI_RS07690 PF01225 Mur ligase family, catalytic domain SCI_RS07690 PF08245 Mur ligase middle domain SCI_RS07690 PF02875 Mur ligase family, glutamate ligase domain SCI_RS07700 PF00176 SNF2 family N-terminal domain SCI_RS07700 PF12419 SNF2 Helicase protein SCI_RS07700 PF00271 Helicase conserved C-terminal domain SCI_RS07710 PF01926 50S ribosome-binding GTPase SCI_RS07710 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SCI_RS07715 PF01695 IstB-like ATP binding protein SCI_RS07715 PF07319 Primosomal protein DnaI N-terminus SCI_RS07725 PF03477 ATP cone domain SCI_RS07730 PF03372 Endonuclease/Exonuclease/phosphatase family SCI_RS07735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SCI_RS07735 PF00367 phosphotransferase system, EIIB SCI_RS07735 PF02378 Phosphotransferase system, EIIC SCI_RS07740 PF00072 Response regulator receiver domain SCI_RS07740 PF00486 Transcriptional regulatory protein, C terminal SCI_RS07745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SCI_RS07745 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SCI_RS07760 PF01435 Peptidase family M48 SCI_RS07765 PF04011 LemA family SCI_RS07770 PF02527 rRNA small subunit methyltransferase G SCI_RS07775 PF01501 Glycosyl transferase family 8 SCI_RS07775 PF08437 Glycosyl transferase family 8 C-terminal SCI_RS07780 PF00106 short chain dehydrogenase SCI_RS07790 PF00005 ABC transporter SCI_RS07790 PF12558 ATP-binding cassette cobalt transporter SCI_RS07820 PF07155 ECF-type riboflavin transporter, S component SCI_RS07910 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS07915 PF00005 ABC transporter SCI_RS07915 PF09383 NIL domain SCI_RS07920 PF01546 Peptidase family M20/M25/M40 SCI_RS07920 PF07687 Peptidase dimerisation domain SCI_RS07925 PF03180 NLPA lipoprotein SCI_RS07930 PF00497 Bacterial extracellular solute-binding proteins, family 3 SCI_RS07940 PF01381 Helix-turn-helix SCI_RS07945 PF01709 Transcriptional regulator SCI_RS07950 PF05636 HIGH Nucleotidyl Transferase SCI_RS07960 PF13649 Methyltransferase domain SCI_RS07970 PF01966 HD domain SCI_RS07975 PF01467 Cytidylyltransferase-like SCI_RS07980 PF01985 CRS1 / YhbY (CRM) domain SCI_RS07985 PF01926 50S ribosome-binding GTPase SCI_RS08000 PF00892 EamA-like transporter family SCI_RS08005 PF02637 GatB domain SCI_RS08005 PF02934 GatB/GatE catalytic domain SCI_RS08015 PF01425 Amidase SCI_RS08020 PF02686 Glu-tRNAGln amidotransferase C subunit SCI_RS08025 PF01336 OB-fold nucleic acid binding domain SCI_RS08025 PF00152 tRNA synthetases class II (D, K and N) SCI_RS08025 PF02938 GAD domain SCI_RS08030 PF00857 Isochorismatase family SCI_RS08035 PF08222 CodY helix-turn-helix domain SCI_RS08035 PF06018 CodY GAF-like domain SCI_RS08040 PF00155 Aminotransferase class I and II SCI_RS08045 PF00582 Universal stress protein family SCI_RS08055 PF17763 Glutaminase/Asparaginase C-terminal domain SCI_RS08055 PF00710 Asparaginase, N-terminal SCI_RS08060 PF17191 RecG wedge domain SCI_RS08060 PF00270 DEAD/DEAH box helicase SCI_RS08060 PF00271 Helicase conserved C-terminal domain SCI_RS08065 PF01168 Alanine racemase, N-terminal domain SCI_RS08065 PF00842 Alanine racemase, C-terminal domain SCI_RS08070 PF01648 4'-phosphopantetheinyl transferase superfamily SCI_RS08075 PF00793 DAHP synthetase I family SCI_RS08080 PF07517 SecA DEAD-like domain SCI_RS08080 PF02810 SEC-C motif SCI_RS08080 PF01043 SecA preprotein cross-linking domain SCI_RS08080 PF07516 SecA Wing and Scaffold domain SCI_RS08090 PF01238 Phosphomannose isomerase type I SCI_RS08095 PF07702 UTRA domain SCI_RS08095 PF00392 Bacterial regulatory proteins, gntR family SCI_RS08100 PF02378 Phosphotransferase system, EIIC SCI_RS08105 PF00232 Glycosyl hydrolase family 1 SCI_RS08110 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SCI_RS08115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS08120 PF00005 ABC transporter SCI_RS08120 PF00664 ABC transporter transmembrane region SCI_RS08125 PF00664 ABC transporter transmembrane region SCI_RS08125 PF00005 ABC transporter SCI_RS08135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SCI_RS08140 PF01327 Polypeptide deformylase SCI_RS08145 PF00480 ROK family SCI_RS08150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SCI_RS08150 PF00367 phosphotransferase system, EIIB SCI_RS08150 PF02378 Phosphotransferase system, EIIC SCI_RS08155 PF00251 Glycosyl hydrolases family 32 N-terminal domain SCI_RS08155 PF08244 Glycosyl hydrolases family 32 C terminal SCI_RS08160 PF00356 Bacterial regulatory proteins, lacI family SCI_RS08170 PF00005 ABC transporter SCI_RS08170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SCI_RS08175 PF00005 ABC transporter SCI_RS08175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SCI_RS08180 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS08180 PF12911 N-terminal TM domain of oligopeptide transport permease C SCI_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS08190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SCI_RS08195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SCI_RS08205 PF06418 CTP synthase N-terminus SCI_RS08205 PF00117 Glutamine amidotransferase class-I SCI_RS08210 PF05066 HB1, ASXL, restriction endonuclease HTH domain SCI_RS08220 PF05697 Bacterial trigger factor protein (TF) SCI_RS08220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SCI_RS08220 PF05698 Bacterial trigger factor protein (TF) C-terminus SCI_RS08225 PF04260 Protein of unknown function (DUF436) SCI_RS08230 PF07155 ECF-type riboflavin transporter, S component SCI_RS08235 PF08543 Phosphomethylpyrimidine kinase SCI_RS08240 PF01416 tRNA pseudouridine synthase SCI_RS08245 PF13344 Haloacid dehalogenase-like hydrolase SCI_RS08245 PF00293 NUDIX domain SCI_RS08250 PF00684 DnaJ central domain SCI_RS08250 PF00226 DnaJ domain SCI_RS08250 PF01556 DnaJ C terminal domain SCI_RS08255 PF00012 Hsp70 protein SCI_RS08260 PF01025 GrpE SCI_RS08265 PF01628 HrcA protein C terminal domain SCI_RS08265 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SCI_RS08270 PF00923 Transaldolase/Fructose-6-phosphate aldolase SCI_RS08275 PF03611 PTS system sugar-specific permease component SCI_RS08280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS08285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SCI_RS08295 PF00300 Histidine phosphatase superfamily (branch 1) SCI_RS08300 PF05167 Uncharacterised ACR (DUF711) SCI_RS08310 PF00356 Bacterial regulatory proteins, lacI family SCI_RS08325 PF03613 PTS system mannose/fructose/sorbose family IID component SCI_RS08330 PF03609 PTS system sorbose-specific iic component SCI_RS08335 PF03830 PTS system sorbose subfamily IIB component SCI_RS08340 PF07470 Glycosyl Hydrolase Family 88 SCI_RS08375 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SCI_RS08375 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SCI_RS08375 PF02278 Polysaccharide lyase family 8, super-sandwich domain SCI_RS08380 PF00255 Glutathione peroxidase SCI_RS08390 PF03949 Malic enzyme, NAD binding domain SCI_RS08390 PF00390 Malic enzyme, N-terminal domain SCI_RS08400 PF03466 LysR substrate binding domain SCI_RS08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SCI_RS08405 PF00380 Ribosomal protein S9/S16 SCI_RS08410 PF00572 Ribosomal protein L13 SCI_RS08415 PF02645 Uncharacterised protein, DegV family COG1307 SCI_RS08425 PF08032 RNA 2'-O ribose methyltransferase substrate binding SCI_RS08425 PF00588 SpoU rRNA Methylase family SCI_RS08430 PF00005 ABC transporter SCI_RS08430 PF17912 MalK OB fold domain SCI_RS08430 PF03459 TOBE domain SCI_RS08435 PF13556 PucR C-terminal helix-turn-helix domain SCI_RS08440 PF00636 Ribonuclease III domain SCI_RS08445 PF01406 tRNA synthetases class I (C) catalytic domain SCI_RS08445 PF09190 DALR domain SCI_RS08450 PF00132 Bacterial transferase hexapeptide (six repeats) SCI_RS08455 PF03725 3' exoribonuclease family, domain 2 SCI_RS08455 PF01138 3' exoribonuclease family, domain 1 SCI_RS08455 PF00013 KH domain SCI_RS08455 PF00575 S1 RNA binding domain SCI_RS08455 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SCI_RS08460 PF01432 Peptidase family M3 SCI_RS08460 PF08439 Oligopeptidase F SCI_RS08470 PF00312 Ribosomal protein S15 SCI_RS08475 PF01479 S4 domain SCI_RS08475 PF00849 RNA pseudouridylate synthase SCI_RS08490 PF01327 Polypeptide deformylase SCI_RS08500 PF00929 Exonuclease SCI_RS08500 PF07733 Bacterial DNA polymerase III alpha NTPase domain SCI_RS08500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SCI_RS08500 PF14480 DNA polymerase III polC-type N-terminus I SCI_RS08500 PF11490 DNA polymerase III polC-type N-terminus II SCI_RS08500 PF02811 PHP domain SCI_RS08505 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SCI_RS08510 PF03714 Bacterial pullanase-associated domain SCI_RS08510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SCI_RS08510 PF00128 Alpha amylase, catalytic domain SCI_RS08515 PF08264 Anticodon-binding domain of tRNA SCI_RS08515 PF13603 Leucyl-tRNA synthetase, Domain 2 SCI_RS08515 PF00133 tRNA synthetases class I (I, L, M and V) SCI_RS08515 PF09334 tRNA synthetases class I (M) SCI_RS08525 PF01610 Transposase SCI_RS08525 PF13683 Integrase core domain SCI_RS08530 PF01431 Peptidase family M13 SCI_RS08530 PF05649 Peptidase family M13 SCI_RS08535 PF00005 ABC transporter SCI_RS08540 PF00950 ABC 3 transport family SCI_RS08545 PF01297 Zinc-uptake complex component A periplasmic SCI_RS08555 PF02580 D-Tyr-tRNA(Tyr) deacylase SCI_RS08560 PF02824 TGS domain SCI_RS08560 PF04607 Region found in RelA / SpoT proteins SCI_RS08560 PF13291 ACT domain SCI_RS08565 PF04452 RNA methyltransferase SCI_RS08575 PF13673 Acetyltransferase (GNAT) domain SCI_RS08590 PF05496 Holliday junction DNA helicase RuvB P-loop domain SCI_RS08590 PF12002 MgsA AAA+ ATPase C terminal SCI_RS08590 PF16193 AAA C-terminal domain SCI_RS08610 PF01712 Deoxynucleoside kinase SCI_RS08615 PF02677 Epoxyqueuosine reductase QueH SCI_RS08625 PF00118 TCP-1/cpn60 chaperonin family SCI_RS08630 PF00166 Chaperonin 10 Kd subunit SCI_RS08640 PF03613 PTS system mannose/fructose/sorbose family IID component SCI_RS08645 PF03609 PTS system sorbose-specific iic component SCI_RS08665 PF00072 Response regulator receiver domain SCI_RS08665 PF00196 Bacterial regulatory proteins, luxR family SCI_RS08670 PF07730 Histidine kinase SCI_RS08680 PF00436 Single-strand binding protein family SCI_RS08685 PF14794 Domain of unknown function (DUF4479) SCI_RS08685 PF01588 Putative tRNA binding domain SCI_RS08690 PF00085 Thioredoxin SCI_RS08700 PF05343 M42 glutamyl aminopeptidase SCI_RS08705 PF07155 ECF-type riboflavin transporter, S component SCI_RS08710 PF02875 Mur ligase family, glutamate ligase domain SCI_RS08710 PF08245 Mur ligase middle domain SCI_RS08720 PF04073 Aminoacyl-tRNA editing domain SCI_RS08720 PF03129 Anticodon binding domain SCI_RS08720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SCI_RS08725 PF02163 Peptidase family M50 SCI_RS08735 PF01255 Putative undecaprenyl diphosphate synthase SCI_RS08750 PF02779 Transketolase, pyrimidine binding domain SCI_RS08750 PF02780 Transketolase, C-terminal domain SCI_RS08750 PF00456 Transketolase, thiamine diphosphate binding domain SCI_RS08765 PF00596 Class II Aldolase and Adducin N-terminal domain SCI_RS08770 PF01261 Xylose isomerase-like TIM barrel SCI_RS08775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SCI_RS08780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SCI_RS08785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SCI_RS08790 PF03611 PTS system sugar-specific permease component SCI_RS08795 PF00004 ATPase family associated with various cellular activities (AAA) SCI_RS08795 PF10431 C-terminal, D2-small domain, of ClpB protein SCI_RS08795 PF17871 AAA lid domain SCI_RS08795 PF07724 AAA domain (Cdc48 subfamily) SCI_RS08800 PF01380 SIS domain SCI_RS08805 PF00871 Acetokinase family SCI_RS08835 PF07963 Prokaryotic N-terminal methylation motif SCI_RS08840 PF00482 Type II secretion system (T2SS), protein F SCI_RS08845 PF00437 Type II/IV secretion system protein SCI_RS08855 PF03951 Glutamine synthetase, beta-Grasp domain SCI_RS08855 PF00120 Glutamine synthetase, catalytic domain SCI_RS08860 PF13411 MerR HTH family regulatory protein SCI_RS08880 PF00162 Phosphoglycerate kinase SCI_RS08890 PF04998 RNA polymerase Rpb1, domain 5 SCI_RS08890 PF00623 RNA polymerase Rpb1, domain 2 SCI_RS08890 PF04983 RNA polymerase Rpb1, domain 3 SCI_RS08890 PF04997 RNA polymerase Rpb1, domain 1 SCI_RS08890 PF05000 RNA polymerase Rpb1, domain 4 SCI_RS08895 PF04560 RNA polymerase Rpb2, domain 7 SCI_RS08895 PF00562 RNA polymerase Rpb2, domain 6 SCI_RS08895 PF10385 RNA polymerase beta subunit external 1 domain SCI_RS08895 PF04561 RNA polymerase Rpb2, domain 2 SCI_RS08895 PF04563 RNA polymerase beta subunit SCI_RS08895 PF04565 RNA polymerase Rpb2, domain 3 SCI_RS08900 PF00905 Penicillin binding protein transpeptidase domain SCI_RS08900 PF00912 Transglycosylase SCI_RS08905 PF01479 S4 domain SCI_RS08905 PF00579 tRNA synthetases class I (W and Y) SCI_RS08910 PF13847 Methyltransferase domain SCI_RS08920 PF01812 5-formyltetrahydrofolate cyclo-ligase family SCI_RS08925 PF00749 tRNA synthetases class I (E and Q), catalytic domain SCI_RS08930 PF18073 Rubredoxin metal binding domain SCI_RS08935 PF00692 dUTPase SCI_RS08945 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SCI_RS08945 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SCI_RS08950 PF00483 Nucleotidyl transferase SCI_RS09005 PF14659 Phage integrase, N-terminal SAM-like domain SCI_RS09005 PF00589 Phage integrase family SCI_RS09095 PF01196 Ribosomal protein L17 SCI_RS09100 PF01000 RNA polymerase Rpb3/RpoA insert domain SCI_RS09100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SCI_RS09100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SCI_RS09105 PF00411 Ribosomal protein S11 SCI_RS09110 PF00416 Ribosomal protein S13/S18 SCI_RS09115 PF01176 Translation initiation factor 1A / IF-1 SCI_RS09125 PF00344 SecY translocase SCI_RS09130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SCI_RS09135 PF00327 Ribosomal protein L30p/L7e SCI_RS09140 PF00333 Ribosomal protein S5, N-terminal domain SCI_RS09140 PF03719 Ribosomal protein S5, C-terminal domain SCI_RS09145 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SCI_RS09150 PF00347 Ribosomal protein L6 SCI_RS09155 PF00410 Ribosomal protein S8 SCI_RS09160 PF00253 Ribosomal protein S14p/S29e SCI_RS09165 PF00281 Ribosomal protein L5 SCI_RS09165 PF00673 ribosomal L5P family C-terminus SCI_RS09170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SCI_RS09170 PF00467 KOW motif SCI_RS09175 PF00238 Ribosomal protein L14p/L23e SCI_RS09180 PF00366 Ribosomal protein S17 SCI_RS09185 PF00831 Ribosomal L29 protein SCI_RS09190 PF00252 Ribosomal protein L16p/L10e SCI_RS09195 PF07650 KH domain SCI_RS09195 PF00189 Ribosomal protein S3, C-terminal domain SCI_RS09200 PF00237 Ribosomal protein L22p/L17e SCI_RS09205 PF00203 Ribosomal protein S19 SCI_RS09210 PF03947 Ribosomal Proteins L2, C-terminal domain SCI_RS09210 PF00181 Ribosomal Proteins L2, RNA binding domain SCI_RS09215 PF00276 Ribosomal protein L23 SCI_RS09220 PF00573 Ribosomal protein L4/L1 family SCI_RS09225 PF00297 Ribosomal protein L3 SCI_RS09230 PF00338 Ribosomal protein S10p/S20e SCI_RS09245 PF01702 Queuine tRNA-ribosyltransferase SCI_RS09260 PF13380 CoA binding domain SCI_RS09265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SCI_RS09265 PF01367 5'-3' exonuclease, C-terminal SAM fold SCI_RS09265 PF00476 DNA polymerase family A SCI_RS09275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SCI_RS09275 PF00367 phosphotransferase system, EIIB SCI_RS09275 PF02378 Phosphotransferase system, EIIC SCI_RS09285 PF00512 His Kinase A (phospho-acceptor) domain SCI_RS09285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SCI_RS09290 PF00072 Response regulator receiver domain SCI_RS09290 PF00486 Transcriptional regulatory protein, C terminal SCI_RS09375 PF03477 ATP cone domain SCI_RS09375 PF13597 Anaerobic ribonucleoside-triphosphate reductase SCI_RS09385 PF13091 PLD-like domain SCI_RS09405 PF08245 Mur ligase middle domain SCI_RS09405 PF02875 Mur ligase family, glutamate ligase domain SCI_RS09410 PF06949 Protein of unknown function (DUF1292) SCI_RS09415 PF03652 Holliday junction resolvase SCI_RS09420 PF06135 IreB regulatory phosphoprotein SCI_RS09435 PF03960 ArsC family SCI_RS09440 PF00154 recA bacterial DNA recombination protein SCI_RS09445 PF00994 Probable molybdopterin binding domain SCI_RS09445 PF18146 Damage-inducible protein CinA KH domain SCI_RS09445 PF02464 Competence-damaged protein SCI_RS09450 PF00005 ABC transporter SCI_RS09450 PF02687 FtsX-like permease family SCI_RS09450 PF12704 MacB-like periplasmic core domain SCI_RS09465 PF00892 EamA-like transporter family SCI_RS09470 PF03352 Methyladenine glycosylase SCI_RS09470 PF13673 Acetyltransferase (GNAT) domain SCI_RS09470 PF13302 Acetyltransferase (GNAT) domain SCI_RS09470 PF00117 Glutamine amidotransferase class-I SCI_RS09470 PF00958 GMP synthase C terminal domain SCI_RS09475 PF01330 RuvA N terminal domain SCI_RS09475 PF07499 RuvA, C-terminal domain SCI_RS09480 PF01119 DNA mismatch repair protein, C-terminal domain SCI_RS09480 PF08676 MutL C terminal dimerisation domain SCI_RS09495 PF01624 MutS domain I SCI_RS09495 PF05188 MutS domain II SCI_RS09495 PF00488 MutS domain V SCI_RS09495 PF05192 MutS domain III SCI_RS09495 PF05190 MutS family domain IV SCI_RS09500 PF01316 Arginine repressor, DNA binding domain SCI_RS09500 PF02863 Arginine repressor, C-terminal domain SCI_RS09505 PF03485 Arginyl tRNA synthetase N terminal domain SCI_RS09505 PF05746 DALR anticodon binding domain SCI_RS09505 PF00750 tRNA synthetases class I (R) SCI_RS09510 PF07972 NrdI Flavodoxin like SCI_RS09520 PF00343 Carbohydrate phosphorylase SCI_RS09525 PF02446 4-alpha-glucanotransferase SCI_RS09530 PF13416 Bacterial extracellular solute-binding protein SCI_RS09535 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS09540 PF00528 Binding-protein-dependent transport system inner membrane component SCI_RS09550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SCI_RS09550 PF00356 Bacterial regulatory proteins, lacI family SCI_RS09555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SCI_RS09555 PF00128 Alpha amylase, catalytic domain SCI_RS09555 PF17999 Pullulanase N1-terminal domain SCI_RS09560 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SCI_RS09560 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SCI_RS09565 PF01336 OB-fold nucleic acid binding domain SCI_RS09565 PF00152 tRNA synthetases class II (D, K and N) SCI_RS09565 PF02938 GAD domain SCI_RS09575 PF13393 Histidyl-tRNA synthetase SCI_RS09575 PF03129 Anticodon binding domain SCI_RS09580 PF01783 Ribosomal L32p protein family SCI_RS09585 PF00471 Ribosomal protein L33 SCI_RS09595 PF01022 Bacterial regulatory protein, arsR family SCI_RS09635 PF00589 Phage integrase family SCI_RS09635 PF02899 Phage integrase, N-terminal SAM-like domain SCI_RS09655 PF07690 Major Facilitator Superfamily SCI_RS09665 PF02245 Methylpurine-DNA glycosylase (MPG) SCI_RS09680 PF04914 DltD protein SCI_RS09685 PF00550 Phosphopantetheine attachment site SCI_RS09690 PF03062 MBOAT, membrane-bound O-acyltransferase family SCI_RS09695 PF00501 AMP-binding enzyme SCI_RS09695 PF13193 AMP-binding enzyme C-terminal domain SCI_RS09785 PF00163 Ribosomal protein S4/S9 N-terminal domain SCI_RS09785 PF01479 S4 domain SCI_RS09790 PF13419 Haloacid dehalogenase-like hydrolase SCI_RS09800 PF03796 DnaB-like helicase C terminal domain SCI_RS09800 PF00772 DnaB-like helicase N terminal domain SCI_RS09805 PF03948 Ribosomal protein L9, C-terminal domain SCI_RS09805 PF01281 Ribosomal protein L9, N-terminal domain SCI_RS09810 PF02272 DHHA1 domain SCI_RS09810 PF01368 DHH family SCI_RS09815 PF13932 GidA associated domain SCI_RS09815 PF01134 Glucose inhibited division protein A SCI_RS09825 PF05257 CHAP domain SCI_RS09825 PF01476 LysM domain SCI_RS09830 PF01842 ACT domain SCI_RS09830 PF03315 Serine dehydratase beta chain SCI_RS09835 PF03313 Serine dehydratase alpha chain SCI_RS09845 PF01464 Transglycosylase SLT domain SCI_RS09850 PF02361 Cobalt transport protein SCI_RS09855 PF00005 ABC transporter SCI_RS09860 PF00005 ABC transporter SCI_RS09865 PF01066 CDP-alcohol phosphatidyltransferase SCI_RS09875 PF05193 Peptidase M16 inactive domain SCI_RS09875 PF00675 Insulinase (Peptidase family M16) SCI_RS09880 PF05193 Peptidase M16 inactive domain SCI_RS09890 PF02463 RecF/RecN/SMC N terminal domain SCI_RS09895 PF00571 CBS domain SCI_RS09895 PF00478 IMP dehydrogenase / GMP reductase domain SCI_RS09900 PF00579 tRNA synthetases class I (W and Y) SCI_RS09905 PF16363 GDP-mannose 4,6 dehydratase SCI_RS09910 PF00121 Triosephosphate isomerase SCI_RS09920 PF00005 ABC transporter SCI_RS09920 PF12848 ABC transporter SCI_RS09960 PF02590 Predicted SPOUT methyltransferase SCI_RS09965 PF13180 PDZ domain SCI_RS09970 PF17762 HTH domain found in ParB protein SCI_RS09970 PF02195 ParB-like nuclease domain SCI_RS10005 PF13154 Protein of unknown function (DUF3991) SCI_RS10025 PF13276 HTH-like domain SCI_RS10025 PF00665 Integrase core domain SCI_RS10025 PF13333 Integrase core domain