locus-tag class description SDE12394_RS00005 PF00308 Bacterial dnaA protein SDE12394_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SDE12394_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SDE12394_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SDE12394_RS00010 PF02767 DNA polymerase III beta subunit, central domain SDE12394_RS00030 PF01926 50S ribosome-binding GTPase SDE12394_RS00030 PF06071 Protein of unknown function (DUF933) SDE12394_RS00035 PF01195 Peptidyl-tRNA hydrolase SDE12394_RS00040 PF02559 CarD-like/TRCF domain SDE12394_RS00040 PF00270 DEAD/DEAH box helicase SDE12394_RS00040 PF00271 Helicase conserved C-terminal domain SDE12394_RS00040 PF03461 TRCF domain SDE12394_RS00040 PF17757 UvrB interaction domain SDE12394_RS00045 PF14667 Polysaccharide biosynthesis C-terminal domain SDE12394_RS00045 PF01943 Polysaccharide biosynthesis protein SDE12394_RS00050 PF01479 S4 domain SDE12394_RS00065 PF01171 PP-loop family SDE12394_RS00070 PF00156 Phosphoribosyl transferase domain SDE12394_RS00075 PF17862 AAA+ lid domain SDE12394_RS00075 PF06480 FtsH Extracellular SDE12394_RS00075 PF01434 Peptidase family M41 SDE12394_RS00075 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS00080 PF13520 Amino acid permease SDE12394_RS00085 PF13936 Helix-turn-helix domain SDE12394_RS00090 PF13936 Helix-turn-helix domain SDE12394_RS00200 PF01476 LysM domain SDE12394_RS00200 PF05257 CHAP domain SDE12394_RS00205 PF14572 Phosphoribosyl synthetase-associated domain SDE12394_RS00205 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SDE12394_RS00210 PF11967 Recombination protein O N terminal SDE12394_RS00210 PF02565 Recombination protein O C terminal SDE12394_RS00215 PF02504 Fatty acid synthesis protein SDE12394_RS00220 PF00550 Phosphopantetheine attachment site SDE12394_RS00225 PF01259 SAICAR synthetase SDE12394_RS00230 PF02769 AIR synthase related protein, C-terminal domain SDE12394_RS00230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SDE12394_RS00230 PF00586 AIR synthase related protein, N-terminal domain SDE12394_RS00235 PF13537 Glutamine amidotransferase domain SDE12394_RS00235 PF00156 Phosphoribosyl transferase domain SDE12394_RS00240 PF00586 AIR synthase related protein, N-terminal domain SDE12394_RS00240 PF02769 AIR synthase related protein, C-terminal domain SDE12394_RS00245 PF00551 Formyl transferase SDE12394_RS00250 PF04892 VanZ like family SDE12394_RS00255 PF01808 AICARFT/IMPCHase bienzyme SDE12394_RS00255 PF02142 MGS-like domain SDE12394_RS00260 PF05257 CHAP domain SDE12394_RS00265 PF02844 Phosphoribosylglycinamide synthetase, N domain SDE12394_RS00265 PF02843 Phosphoribosylglycinamide synthetase, C domain SDE12394_RS00265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SDE12394_RS00270 PF00731 AIR carboxylase SDE12394_RS00275 PF02222 ATP-grasp domain SDE12394_RS00275 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SDE12394_RS00275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDE12394_RS00290 PF10397 Adenylosuccinate lyase C-terminus SDE12394_RS00290 PF00206 Lyase SDE12394_RS00300 PF05496 Holliday junction DNA helicase RuvB P-loop domain SDE12394_RS00300 PF05491 RuvB C-terminal winged helix domain SDE12394_RS00300 PF17864 RuvB AAA lid domain SDE12394_RS00305 PF01451 Low molecular weight phosphotyrosine protein phosphatase SDE12394_RS00315 PF01757 Acyltransferase family SDE12394_RS00320 PF00171 Aldehyde dehydrogenase family SDE12394_RS00320 PF00465 Iron-containing alcohol dehydrogenase SDE12394_RS00325 PF08240 Alcohol dehydrogenase GroES-like domain SDE12394_RS00325 PF00107 Zinc-binding dehydrogenase SDE12394_RS00330 PF00291 Pyridoxal-phosphate dependent enzyme SDE12394_RS00345 PF13936 Helix-turn-helix domain SDE12394_RS00350 PF00338 Ribosomal protein S10p/S20e SDE12394_RS00355 PF00297 Ribosomal protein L3 SDE12394_RS00360 PF00573 Ribosomal protein L4/L1 family SDE12394_RS00365 PF00276 Ribosomal protein L23 SDE12394_RS00370 PF00181 Ribosomal Proteins L2, RNA binding domain SDE12394_RS00370 PF03947 Ribosomal Proteins L2, C-terminal domain SDE12394_RS00375 PF00203 Ribosomal protein S19 SDE12394_RS00380 PF00237 Ribosomal protein L22p/L17e SDE12394_RS00385 PF07650 KH domain SDE12394_RS00385 PF00189 Ribosomal protein S3, C-terminal domain SDE12394_RS00390 PF00252 Ribosomal protein L16p/L10e SDE12394_RS00395 PF00831 Ribosomal L29 protein SDE12394_RS00400 PF00366 Ribosomal protein S17 SDE12394_RS00405 PF00238 Ribosomal protein L14p/L23e SDE12394_RS00410 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SDE12394_RS00410 PF00467 KOW motif SDE12394_RS00415 PF00673 ribosomal L5P family C-terminus SDE12394_RS00415 PF00281 Ribosomal protein L5 SDE12394_RS00420 PF00253 Ribosomal protein S14p/S29e SDE12394_RS00425 PF00410 Ribosomal protein S8 SDE12394_RS00430 PF00347 Ribosomal protein L6 SDE12394_RS00435 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SDE12394_RS00440 PF03719 Ribosomal protein S5, C-terminal domain SDE12394_RS00440 PF00333 Ribosomal protein S5, N-terminal domain SDE12394_RS00445 PF00327 Ribosomal protein L30p/L7e SDE12394_RS00450 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SDE12394_RS00455 PF00344 SecY translocase SDE12394_RS00465 PF01176 Translation initiation factor 1A / IF-1 SDE12394_RS00470 PF00416 Ribosomal protein S13/S18 SDE12394_RS00475 PF00411 Ribosomal protein S11 SDE12394_RS00480 PF01000 RNA polymerase Rpb3/RpoA insert domain SDE12394_RS00480 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SDE12394_RS00480 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SDE12394_RS00485 PF01196 Ribosomal protein L17 SDE12394_RS00490 PF13936 Helix-turn-helix domain SDE12394_RS00495 PF13936 Helix-turn-helix domain SDE12394_RS00580 PF00293 NUDIX domain SDE12394_RS00590 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS00595 PF01654 Cytochrome bd terminal oxidase subunit I SDE12394_RS00600 PF02322 Cytochrome bd terminal oxidase subunit II SDE12394_RS00605 PF00664 ABC transporter transmembrane region SDE12394_RS00605 PF00005 ABC transporter SDE12394_RS00610 PF00005 ABC transporter SDE12394_RS00610 PF00664 ABC transporter transmembrane region SDE12394_RS00615 PF00348 Polyprenyl synthetase SDE12394_RS00620 PF00288 GHMP kinases N terminal domain SDE12394_RS00620 PF08544 GHMP kinases C terminal SDE12394_RS00625 PF01047 MarR family SDE12394_RS00630 PF00005 ABC transporter SDE12394_RS00635 PF00950 ABC 3 transport family SDE12394_RS00640 PF00579 tRNA synthetases class I (W and Y) SDE12394_RS00640 PF01479 S4 domain SDE12394_RS00645 PF00905 Penicillin binding protein transpeptidase domain SDE12394_RS00645 PF00912 Transglycosylase SDE12394_RS00650 PF04565 RNA polymerase Rpb2, domain 3 SDE12394_RS00650 PF10385 RNA polymerase beta subunit external 1 domain SDE12394_RS00650 PF04561 RNA polymerase Rpb2, domain 2 SDE12394_RS00650 PF00562 RNA polymerase Rpb2, domain 6 SDE12394_RS00650 PF04560 RNA polymerase Rpb2, domain 7 SDE12394_RS00650 PF04563 RNA polymerase beta subunit SDE12394_RS00655 PF04997 RNA polymerase Rpb1, domain 1 SDE12394_RS00655 PF00623 RNA polymerase Rpb1, domain 2 SDE12394_RS00655 PF04983 RNA polymerase Rpb1, domain 3 SDE12394_RS00655 PF05000 RNA polymerase Rpb1, domain 4 SDE12394_RS00655 PF04998 RNA polymerase Rpb1, domain 5 SDE12394_RS00665 PF00437 Type II/IV secretion system protein SDE12394_RS00670 PF00482 Type II secretion system (T2SS), protein F SDE12394_RS00675 PF07963 Prokaryotic N-terminal methylation motif SDE12394_RS00705 PF00871 Acetokinase family SDE12394_RS00715 PF02517 CPBP intramembrane metalloprotease SDE12394_RS00725 PF03807 NADP oxidoreductase coenzyme F420-dependent SDE12394_RS00725 PF14748 Pyrroline-5-carboxylate reductase dimerisation SDE12394_RS00730 PF05343 M42 glutamyl aminopeptidase SDE12394_RS00740 PF00085 Thioredoxin SDE12394_RS00745 PF01588 Putative tRNA binding domain SDE12394_RS00745 PF14794 Domain of unknown function (DUF4479) SDE12394_RS00750 PF00436 Single-strand binding protein family SDE12394_RS00755 PF01712 Deoxynucleoside kinase SDE12394_RS00760 PF01207 Dihydrouridine synthase (Dus) SDE12394_RS00765 PF01430 Hsp33 protein SDE12394_RS00805 PF01042 Endoribonuclease L-PSP SDE12394_RS00825 PF00709 Adenylosuccinate synthetase SDE12394_RS00830 PF02608 ABC transporter substrate-binding protein PnrA-like SDE12394_RS00835 PF04055 Radical SAM superfamily SDE12394_RS00840 PF08220 DeoR-like helix-turn-helix domain SDE12394_RS00840 PF00455 DeoR C terminal sensor domain SDE12394_RS00845 PF04198 Putative sugar-binding domain SDE12394_RS00850 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SDE12394_RS00855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS00860 PF02378 Phosphotransferase system, EIIC SDE12394_RS00865 PF01228 Glycine radical SDE12394_RS00865 PF02901 Pyruvate formate lyase-like SDE12394_RS00870 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDE12394_RS00875 PF00465 Iron-containing alcohol dehydrogenase SDE12394_RS00885 PF04608 Phosphatidylglycerophosphatase A SDE12394_RS00910 PF13443 Cro/C1-type HTH DNA-binding domain SDE12394_RS00925 PF00005 ABC transporter SDE12394_RS00925 PF12848 ABC transporter SDE12394_RS00925 PF16326 ABC transporter C-terminal domain SDE12394_RS00940 PF02545 Maf-like protein SDE12394_RS00975 PF00664 ABC transporter transmembrane region SDE12394_RS00975 PF00005 ABC transporter SDE12394_RS01030 PF09397 Ftsk gamma domain SDE12394_RS01030 PF17854 FtsK alpha domain SDE12394_RS01030 PF01580 FtsK/SpoIIIE family SDE12394_RS01030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SDE12394_RS01055 PF05496 Holliday junction DNA helicase RuvB P-loop domain SDE12394_RS01055 PF12002 MgsA AAA+ ATPase C terminal SDE12394_RS01055 PF16193 AAA C-terminal domain SDE12394_RS01060 PF00117 Glutamine amidotransferase class-I SDE12394_RS01065 PF04715 Anthranilate synthase component I, N terminal region SDE12394_RS01065 PF00425 chorismate binding enzyme SDE12394_RS01080 PF04452 RNA methyltransferase SDE12394_RS01085 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDE12394_RS01085 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS01090 PF00367 phosphotransferase system, EIIB SDE12394_RS01090 PF02378 Phosphotransferase system, EIIC SDE12394_RS01090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDE12394_RS01095 PF03372 Endonuclease/Exonuclease/phosphatase family SDE12394_RS01105 PF05343 M42 glutamyl aminopeptidase SDE12394_RS01115 PF01156 Inosine-uridine preferring nucleoside hydrolase SDE12394_RS01120 PF07972 NrdI Flavodoxin like SDE12394_RS01130 PF04650 YSIRK type signal peptide SDE12394_RS01130 PF04650 YSIRK type signal peptide SDE12394_RS01130 PF00746 LPXTG cell wall anchor motif SDE12394_RS01130 PF00746 LPXTG cell wall anchor motif SDE12394_RS01135 PF02872 5'-nucleotidase, C-terminal domain SDE12394_RS01135 PF00149 Calcineurin-like phosphoesterase SDE12394_RS01140 PF13291 ACT domain SDE12394_RS01140 PF02824 TGS domain SDE12394_RS01140 PF04607 Region found in RelA / SpoT proteins SDE12394_RS01145 PF02580 D-Tyr-tRNA(Tyr) deacylase SDE12394_RS01150 PF02821 Staphylokinase/Streptokinase family SDE12394_RS01155 PF13556 PucR C-terminal helix-turn-helix domain SDE12394_RS01160 PF03459 TOBE domain SDE12394_RS01160 PF00005 ABC transporter SDE12394_RS01160 PF17912 MalK OB fold domain SDE12394_RS01165 PF00128 Alpha amylase, catalytic domain SDE12394_RS01170 PF00128 Alpha amylase, catalytic domain SDE12394_RS01170 PF17999 Pullulanase N1-terminal domain SDE12394_RS01170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDE12394_RS01185 PF02699 Preprotein translocase subunit SDE12394_RS01190 PF01255 Putative undecaprenyl diphosphate synthase SDE12394_RS01200 PF02163 Peptidase family M50 SDE12394_RS01200 PF13180 PDZ domain SDE12394_RS01205 PF03129 Anticodon binding domain SDE12394_RS01205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDE12394_RS01205 PF04073 Aminoacyl-tRNA editing domain SDE12394_RS01215 PF14480 DNA polymerase III polC-type N-terminus I SDE12394_RS01215 PF11490 DNA polymerase III polC-type N-terminus II SDE12394_RS01215 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDE12394_RS01215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDE12394_RS01215 PF00929 Exonuclease SDE12394_RS01215 PF14579 Helix-hairpin-helix motif SDE12394_RS01215 PF02811 PHP domain SDE12394_RS01220 PF01047 MarR family SDE12394_RS01225 PF03358 NADPH-dependent FMN reductase SDE12394_RS01230 PF01327 Polypeptide deformylase SDE12394_RS01245 PF00312 Ribosomal protein S15 SDE12394_RS01260 PF00005 ABC transporter SDE12394_RS01270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS01270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDE12394_RS01270 PF08279 HTH domain SDE12394_RS01270 PF05043 Mga helix-turn-helix domain SDE12394_RS01270 PF00874 PRD domain SDE12394_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS01280 PF03611 PTS system sugar-specific permease component SDE12394_RS01285 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDE12394_RS01290 PF00575 S1 RNA binding domain SDE12394_RS01290 PF00013 KH domain SDE12394_RS01290 PF03725 3' exoribonuclease family, domain 2 SDE12394_RS01290 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SDE12394_RS01290 PF01138 3' exoribonuclease family, domain 1 SDE12394_RS01300 PF06426 Serine acetyltransferase, N-terminal SDE12394_RS01300 PF00132 Bacterial transferase hexapeptide (six repeats) SDE12394_RS01310 PF09190 DALR domain SDE12394_RS01310 PF01406 tRNA synthetases class I (C) catalytic domain SDE12394_RS01315 PF00636 Ribonuclease III domain SDE12394_RS01335 PF00588 SpoU rRNA Methylase family SDE12394_RS01335 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDE12394_RS01345 PF02645 Uncharacterised protein, DegV family COG1307 SDE12394_RS01355 PF01381 Helix-turn-helix SDE12394_RS01360 PF13936 Helix-turn-helix domain SDE12394_RS01365 PF00572 Ribosomal protein L13 SDE12394_RS01370 PF00380 Ribosomal protein S9/S16 SDE12394_RS01435 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SDE12394_RS01465 PF01381 Helix-turn-helix SDE12394_RS01485 PF01381 Helix-turn-helix SDE12394_RS01500 PF05147 Lanthionine synthetase C-like protein SDE12394_RS01510 PF00270 DEAD/DEAH box helicase SDE12394_RS01510 PF13749 Putative ATP-dependent DNA helicase recG C-terminal SDE12394_RS01510 PF17191 RecG wedge domain SDE12394_RS01530 PF03611 PTS system sugar-specific permease component SDE12394_RS01535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS01560 PF13936 Helix-turn-helix domain SDE12394_RS01600 PF13840 ACT domain SDE12394_RS01600 PF00696 Amino acid kinase family SDE12394_RS01605 PF01416 tRNA pseudouridine synthase SDE12394_RS01610 PF08543 Phosphomethylpyrimidine kinase SDE12394_RS01615 PF07155 ECF-type riboflavin transporter, S component SDE12394_RS01620 PF04260 Protein of unknown function (DUF436) SDE12394_RS01625 PF00924 Mechanosensitive ion channel SDE12394_RS01630 PF16738 Starch-binding module 26 SDE12394_RS01630 PF00128 Alpha amylase, catalytic domain SDE12394_RS01635 PF00128 Alpha amylase, catalytic domain SDE12394_RS01635 PF16738 Starch-binding module 26 SDE12394_RS01640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDE12394_RS01640 PF05698 Bacterial trigger factor protein (TF) C-terminus SDE12394_RS01640 PF05697 Bacterial trigger factor protein (TF) SDE12394_RS01645 PF05066 HB1, ASXL, restriction endonuclease HTH domain SDE12394_RS01650 PF06418 CTP synthase N-terminus SDE12394_RS01650 PF00117 Glutamine amidotransferase class-I SDE12394_RS01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS01655 PF07694 5TMR of 5TMR-LYT SDE12394_RS01655 PF06580 Histidine kinase SDE12394_RS01660 PF04397 LytTr DNA-binding domain SDE12394_RS01660 PF00072 Response regulator receiver domain SDE12394_RS01665 PF03788 LrgA family SDE12394_RS01670 PF04172 LrgB-like family SDE12394_RS01685 PF01116 Fructose-bisphosphate aldolase class-II SDE12394_RS01690 PF00830 Ribosomal L28 family SDE12394_RS01695 PF03780 Asp23 family, cell envelope-related function SDE12394_RS01700 PF13684 Dihydroxyacetone kinase family SDE12394_RS01700 PF02734 DAK2 domain SDE12394_RS01710 PF00005 ABC transporter SDE12394_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS01725 PF02673 Bacitracin resistance protein BacA SDE12394_RS01730 PF05389 Negative regulator of genetic competence (MecA) SDE12394_RS01735 PF00953 Glycosyl transferase family 4 SDE12394_RS01740 PF00005 ABC transporter SDE12394_RS01745 PF01458 Uncharacterized protein family (UPF0051) SDE12394_RS01750 PF00266 Aminotransferase class-V SDE12394_RS01755 PF01592 NifU-like N terminal domain SDE12394_RS01760 PF01458 Uncharacterized protein family (UPF0051) SDE12394_RS01765 PF00768 D-alanyl-D-alanine carboxypeptidase SDE12394_RS01765 PF07943 Penicillin-binding protein 5, C-terminal domain SDE12394_RS01770 PF13936 Helix-turn-helix domain SDE12394_RS01775 PF00768 D-alanyl-D-alanine carboxypeptidase SDE12394_RS01775 PF07943 Penicillin-binding protein 5, C-terminal domain SDE12394_RS01780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDE12394_RS01785 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS01790 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS01790 PF12911 N-terminal TM domain of oligopeptide transport permease C SDE12394_RS01795 PF00005 ABC transporter SDE12394_RS01795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDE12394_RS01800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDE12394_RS01800 PF00005 ABC transporter SDE12394_RS01805 PF13936 Helix-turn-helix domain SDE12394_RS01845 PF13936 Helix-turn-helix domain SDE12394_RS01855 PF01926 50S ribosome-binding GTPase SDE12394_RS01860 PF01985 CRS1 / YhbY (CRM) domain SDE12394_RS01865 PF01467 Cytidylyltransferase-like SDE12394_RS01870 PF01966 HD domain SDE12394_RS01885 PF13649 Methyltransferase domain SDE12394_RS01890 PF05636 HIGH Nucleotidyl Transferase SDE12394_RS01895 PF13411 MerR HTH family regulatory protein SDE12394_RS01895 PF07739 TipAS antibiotic-recognition domain SDE12394_RS01910 PF06968 Biotin and Thiamin Synthesis associated domain SDE12394_RS01910 PF04055 Radical SAM superfamily SDE12394_RS01915 PF01709 Transcriptional regulator SDE12394_RS01920 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDE12394_RS01925 PF03180 NLPA lipoprotein SDE12394_RS01930 PF03180 NLPA lipoprotein SDE12394_RS01940 PF09383 NIL domain SDE12394_RS01940 PF00005 ABC transporter SDE12394_RS01945 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS01950 PF05525 Branched-chain amino acid transport protein SDE12394_RS01955 PF00375 Sodium:dicarboxylate symporter family SDE12394_RS01960 PF02254 TrkA-N domain SDE12394_RS01960 PF02080 TrkA-C domain SDE12394_RS01965 PF02386 Cation transport protein SDE12394_RS01970 PF02527 rRNA small subunit methyltransferase G SDE12394_RS01975 PF04011 LemA family SDE12394_RS01980 PF01435 Peptidase family M48 SDE12394_RS01990 PF00072 Response regulator receiver domain SDE12394_RS01990 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS01995 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS01995 PF18719 ArlS sensor domain SDE12394_RS02000 PF03477 ATP cone domain SDE12394_RS02010 PF01695 IstB-like ATP binding protein SDE12394_RS02010 PF07319 Primosomal protein DnaI N-terminus SDE12394_RS02015 PF01926 50S ribosome-binding GTPase SDE12394_RS02015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SDE12394_RS02020 PF00271 Helicase conserved C-terminal domain SDE12394_RS02020 PF12419 SNF2 Helicase protein SDE12394_RS02020 PF00176 SNF2 family N-terminal domain SDE12394_RS02030 PF02875 Mur ligase family, glutamate ligase domain SDE12394_RS02030 PF01225 Mur ligase family, catalytic domain SDE12394_RS02030 PF08245 Mur ligase middle domain SDE12394_RS02040 PF02618 YceG-like family SDE12394_RS02045 PF01272 Transcription elongation factor, GreA/GreB, C-term SDE12394_RS02045 PF03449 Transcription elongation factor, N-terminal SDE12394_RS02050 PF02096 60Kd inner membrane protein SDE12394_RS02055 PF00708 Acylphosphatase SDE12394_RS02060 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDE12394_RS02060 PF00588 SpoU rRNA Methylase family SDE12394_RS02070 PF01027 Inhibitor of apoptosis-promoting Bax1 SDE12394_RS02075 PF03672 Uncharacterised protein family (UPF0154) SDE12394_RS02080 PF01177 Asp/Glu/Hydantoin racemase SDE12394_RS02085 PF01725 Ham1 family SDE12394_RS02095 PF00005 ABC transporter SDE12394_RS02095 PF00571 CBS domain SDE12394_RS02105 PF02616 Segregation and condensation protein ScpA SDE12394_RS02110 PF04079 Segregation and condensation complex subunit ScpB SDE12394_RS02115 PF01479 S4 domain SDE12394_RS02115 PF00849 RNA pseudouridylate synthase SDE12394_RS02120 PF13936 Helix-turn-helix domain SDE12394_RS02125 PF00588 SpoU rRNA Methylase family SDE12394_RS02130 PF12822 ECF transporter, substrate-specific component SDE12394_RS02135 PF01569 PAP2 superfamily SDE12394_RS02140 PF04055 Radical SAM superfamily SDE12394_RS02140 PF16199 Radical_SAM C-terminal domain SDE12394_RS02145 PF06962 Putative rRNA methylase SDE12394_RS02150 PF00571 CBS domain SDE12394_RS02150 PF03471 Transporter associated domain SDE12394_RS02150 PF01595 Cyclin M transmembrane N-terminal domain SDE12394_RS02155 PF04055 Radical SAM superfamily SDE12394_RS02160 PF02833 DHHA2 domain SDE12394_RS02160 PF01368 DHH family SDE12394_RS02170 PF01032 FecCD transport family SDE12394_RS02175 PF01032 FecCD transport family SDE12394_RS02180 PF01497 Periplasmic binding protein SDE12394_RS02185 PF00005 ABC transporter SDE12394_RS02195 PF01943 Polysaccharide biosynthesis protein SDE12394_RS02195 PF14667 Polysaccharide biosynthesis C-terminal domain SDE12394_RS02200 PF13936 Helix-turn-helix domain SDE12394_RS02210 PF00574 Clp protease SDE12394_RS02225 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SDE12394_RS02230 PF13458 Periplasmic binding protein SDE12394_RS02235 PF02653 Branched-chain amino acid transport system / permease component SDE12394_RS02240 PF02653 Branched-chain amino acid transport system / permease component SDE12394_RS02240 PF11862 Domain of unknown function (DUF3382) SDE12394_RS02245 PF12399 Branched-chain amino acid ATP-binding cassette transporter SDE12394_RS02245 PF00005 ABC transporter SDE12394_RS02250 PF00005 ABC transporter SDE12394_RS02255 PF00571 CBS domain SDE12394_RS02260 PF02223 Thymidylate kinase SDE12394_RS02265 PF09115 DNA polymerase III, delta subunit, C terminal SDE12394_RS02275 PF06156 Initiation control protein YabA SDE12394_RS02280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SDE12394_RS02290 PF03932 CutC family SDE12394_RS02295 PF00266 Aminotransferase class-V SDE12394_RS02305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SDE12394_RS02305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SDE12394_RS02310 PF03960 ArsC family SDE12394_RS02325 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDE12394_RS02325 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS02335 PF03372 Endonuclease/Exonuclease/phosphatase family SDE12394_RS02345 PF02652 L-lactate permease SDE12394_RS02350 PF01070 FMN-dependent dehydrogenase SDE12394_RS02370 PF01588 Putative tRNA binding domain SDE12394_RS02370 PF09334 tRNA synthetases class I (M) SDE12394_RS02375 PF00268 Ribonucleotide reductase, small chain SDE12394_RS02380 PF07972 NrdI Flavodoxin like SDE12394_RS02385 PF08343 Ribonucleotide reductase N-terminal SDE12394_RS02385 PF00317 Ribonucleotide reductase, all-alpha domain SDE12394_RS02385 PF02867 Ribonucleotide reductase, barrel domain SDE12394_RS02390 PF05525 Branched-chain amino acid transport protein SDE12394_RS02420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDE12394_RS02420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDE12394_RS02425 PF07690 Major Facilitator Superfamily SDE12394_RS02430 PF14602 Hexapeptide repeat of succinyl-transferase SDE12394_RS02430 PF00132 Bacterial transferase hexapeptide (six repeats) SDE12394_RS02430 PF12804 MobA-like NTP transferase domain SDE12394_RS02435 PF00293 NUDIX domain SDE12394_RS02445 PF01048 Phosphorylase superfamily SDE12394_RS02455 PF01297 Zinc-uptake complex component A periplasmic SDE12394_RS02460 PF00005 ABC transporter SDE12394_RS02465 PF00950 ABC 3 transport family SDE12394_RS02470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDE12394_RS02475 PF17854 FtsK alpha domain SDE12394_RS02475 PF01580 FtsK/SpoIIIE family SDE12394_RS02475 PF09397 Ftsk gamma domain SDE12394_RS02485 PF00298 Ribosomal protein L11, RNA binding domain SDE12394_RS02485 PF03946 Ribosomal protein L11, N-terminal domain SDE12394_RS02490 PF00687 Ribosomal protein L1p/L10e family SDE12394_RS02500 PF00696 Amino acid kinase family SDE12394_RS02505 PF01765 Ribosome recycling factor SDE12394_RS02515 PF01625 Peptide methionine sulfoxide reductase SDE12394_RS02520 PF06855 YozE SAM-like fold SDE12394_RS02530 PF06100 MCRA family SDE12394_RS02535 PF02562 PhoH-like protein SDE12394_RS02540 PF03167 Uracil DNA glycosylase superfamily SDE12394_RS02545 PF02130 Uncharacterized protein family UPF0054 SDE12394_RS02550 PF01219 Prokaryotic diacylglycerol kinase SDE12394_RS02555 PF07650 KH domain SDE12394_RS02555 PF01926 50S ribosome-binding GTPase SDE12394_RS02610 PF00005 ABC transporter SDE12394_RS02610 PF00664 ABC transporter transmembrane region SDE12394_RS02610 PF03412 Peptidase C39 family SDE12394_RS02670 PF01381 Helix-turn-helix SDE12394_RS02675 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SDE12394_RS02675 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SDE12394_RS02675 PF06827 Zinc finger found in FPG and IleRS SDE12394_RS02680 PF01121 Dephospho-CoA kinase SDE12394_RS02685 PF00005 ABC transporter SDE12394_RS02685 PF13732 Domain of unknown function (DUF4162) SDE12394_RS02695 PF05872 Bacterial protein of unknown function (DUF853) SDE12394_RS02705 PF00083 Sugar (and other) transporter SDE12394_RS02705 PF07690 Major Facilitator Superfamily SDE12394_RS02715 PF00575 S1 RNA binding domain SDE12394_RS02715 PF00773 RNB domain SDE12394_RS02715 PF08206 Ribonuclease B OB domain SDE12394_RS02715 PF17876 Cold shock domain SDE12394_RS02720 PF01668 SmpB protein SDE12394_RS02730 PF00535 Glycosyl transferase family 2 SDE12394_RS02740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDE12394_RS02745 PF00881 Nitroreductase family SDE12394_RS02750 PF00557 Metallopeptidase family M24 SDE12394_RS02750 PF01321 Creatinase/Prolidase N-terminal domain SDE12394_RS02755 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS02760 PF09154 Domain of unknown function (DUF1939) SDE12394_RS02760 PF00128 Alpha amylase, catalytic domain SDE12394_RS02765 PF00534 Glycosyl transferases group 1 SDE12394_RS02765 PF13439 Glycosyltransferase Family 4 SDE12394_RS02770 PF13439 Glycosyltransferase Family 4 SDE12394_RS02770 PF00534 Glycosyl transferases group 1 SDE12394_RS02775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDE12394_RS02775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDE12394_RS02775 PF02824 TGS domain SDE12394_RS02775 PF03129 Anticodon binding domain SDE12394_RS02780 PF00005 ABC transporter SDE12394_RS02795 PF02733 Dak1 domain SDE12394_RS02805 PF02733 Dak1 domain SDE12394_RS02810 PF02734 DAK2 domain SDE12394_RS02815 PF03610 PTS system fructose IIA component SDE12394_RS02820 PF00230 Major intrinsic protein SDE12394_RS02845 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS02850 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS02860 PF00005 ABC transporter SDE12394_RS02865 PF00072 Response regulator receiver domain SDE12394_RS02865 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS02870 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS02870 PF00672 HAMP domain SDE12394_RS02870 PF13426 PAS domain SDE12394_RS02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS02875 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS02885 PF02463 RecF/RecN/SMC N terminal domain SDE12394_RS02885 PF06470 SMC proteins Flexible Hinge Domain SDE12394_RS02890 PF00082 Subtilase family SDE12394_RS02890 PF06280 Fn3-like domain SDE12394_RS02890 PF02225 PA domain SDE12394_RS02890 PF00746 LPXTG cell wall anchor motif SDE12394_RS02910 PF00448 SRP54-type protein, GTPase domain SDE12394_RS02910 PF02881 SRP54-type protein, helical bundle domain SDE12394_RS02915 PF07690 Major Facilitator Superfamily SDE12394_RS02920 PF00874 PRD domain SDE12394_RS02920 PF03123 CAT RNA binding domain SDE12394_RS02925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDE12394_RS02925 PF00367 phosphotransferase system, EIIB SDE12394_RS02925 PF02378 Phosphotransferase system, EIIC SDE12394_RS02930 PF00232 Glycosyl hydrolase family 1 SDE12394_RS02935 PF09323 Domain of unknown function (DUF1980) SDE12394_RS02940 PF03773 Predicted permease SDE12394_RS02960 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS02960 PF00072 Response regulator receiver domain SDE12394_RS02965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS02965 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS02965 PF00989 PAS fold SDE12394_RS02965 PF16736 Single Cache-like SDE12394_RS02970 PF12849 PBP superfamily domain SDE12394_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS02980 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS02985 PF00005 ABC transporter SDE12394_RS02990 PF01895 PhoU domain SDE12394_RS03000 PF00575 S1 RNA binding domain SDE12394_RS03000 PF09371 Tex-like protein N-terminal domain SDE12394_RS03000 PF17674 HHH domain SDE12394_RS03000 PF16921 Tex protein YqgF-like domain SDE12394_RS03005 PF10263 SprT-like family SDE12394_RS03015 PF07475 HPr Serine kinase C-terminal domain SDE12394_RS03015 PF02603 HPr Serine kinase N terminus SDE12394_RS03020 PF01790 Prolipoprotein diacylglyceryl transferase SDE12394_RS03030 PF12732 YtxH-like protein SDE12394_RS03045 PF16325 Peptidase family U32 C-terminal domain SDE12394_RS03045 PF01136 Peptidase family U32 SDE12394_RS03050 PF02229 Transcriptional Coactivator p15 (PC4) SDE12394_RS03065 PF00909 Ammonium Transporter Family SDE12394_RS03070 PF00589 Phage integrase family SDE12394_RS03070 PF14659 Phage integrase, N-terminal SAM-like domain SDE12394_RS03080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDE12394_RS03080 PF05257 CHAP domain SDE12394_RS03170 PF01381 Helix-turn-helix SDE12394_RS03190 PF01381 Helix-turn-helix SDE12394_RS03195 PF00817 impB/mucB/samB family SDE12394_RS03195 PF11798 IMS family HHH motif SDE12394_RS03195 PF11799 impB/mucB/samB family C-terminal domain SDE12394_RS03225 PF00152 tRNA synthetases class II (D, K and N) SDE12394_RS03225 PF01336 OB-fold nucleic acid binding domain SDE12394_RS03245 PF04073 Aminoacyl-tRNA editing domain SDE12394_RS03250 PF09515 Thiamine transporter protein (Thia_YuaJ) SDE12394_RS03275 PF00255 Glutathione peroxidase SDE12394_RS03280 PF01432 Peptidase family M3 SDE12394_RS03280 PF08439 Oligopeptidase F SDE12394_RS03285 PF00311 Phosphoenolpyruvate carboxylase SDE12394_RS03290 PF01098 Cell cycle protein SDE12394_RS03295 PF04545 Sigma-70, region 4 SDE12394_RS03295 PF04539 Sigma-70 region 3 SDE12394_RS03295 PF04542 Sigma-70 region 2 SDE12394_RS03305 PF03143 Elongation factor Tu C-terminal domain SDE12394_RS03305 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS03305 PF03144 Elongation factor Tu domain 2 SDE12394_RS03320 PF00535 Glycosyl transferase family 2 SDE12394_RS03330 PF00121 Triosephosphate isomerase SDE12394_RS03335 PF00665 Integrase core domain SDE12394_RS03335 PF13276 HTH-like domain SDE12394_RS03335 PF13333 Integrase core domain SDE12394_RS03370 PF02388 FemAB family SDE12394_RS03380 PF01966 HD domain SDE12394_RS03390 PF00690 Cation transporter/ATPase, N-terminus SDE12394_RS03390 PF00689 Cation transporting ATPase, C-terminus SDE12394_RS03400 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS03410 PF03613 PTS system mannose/fructose/sorbose family IID component SDE12394_RS03415 PF03609 PTS system sorbose-specific iic component SDE12394_RS03420 PF03830 PTS system sorbose subfamily IIB component SDE12394_RS03425 PF07470 Glycosyl Hydrolase Family 88 SDE12394_RS03455 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SDE12394_RS03455 PF02278 Polysaccharide lyase family 8, super-sandwich domain SDE12394_RS03455 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SDE12394_RS03470 PF13936 Helix-turn-helix domain SDE12394_RS03475 PF01381 Helix-turn-helix SDE12394_RS03480 PF00899 ThiF family SDE12394_RS03485 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS03485 PF02861 Clp amino terminal domain, pathogenicity island component SDE12394_RS03485 PF17871 AAA lid domain SDE12394_RS03485 PF07724 AAA domain (Cdc48 subfamily) SDE12394_RS03485 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS03500 PF13419 Haloacid dehalogenase-like hydrolase SDE12394_RS03510 PF08331 Domain of unknown function (DUF1730) SDE12394_RS03515 PF00472 RF-1 domain SDE12394_RS03515 PF03462 PCRF domain SDE12394_RS03520 PF00005 ABC transporter SDE12394_RS03525 PF18075 FtsX extracellular domain SDE12394_RS03525 PF02687 FtsX-like permease family SDE12394_RS03530 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS03535 PF00929 Exonuclease SDE12394_RS03535 PF04851 Type III restriction enzyme, res subunit SDE12394_RS03535 PF13307 Helicase C-terminal domain SDE12394_RS03540 PF00155 Aminotransferase class I and II SDE12394_RS03545 PF00152 tRNA synthetases class II (D, K and N) SDE12394_RS03545 PF01336 OB-fold nucleic acid binding domain SDE12394_RS03555 PF03668 P-loop ATPase protein family SDE12394_RS03560 PF01933 Uncharacterised protein family UPF0052 SDE12394_RS03570 PF03577 Peptidase family C69 SDE12394_RS03575 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SDE12394_RS03575 PF01297 Zinc-uptake complex component A periplasmic SDE12394_RS03580 PF07702 UTRA domain SDE12394_RS03580 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS03585 PF01380 SIS domain SDE12394_RS03590 PF01791 DeoC/LacD family aldolase SDE12394_RS03595 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS03600 PF01301 Glycosyl hydrolases family 35 SDE12394_RS03605 PF03830 PTS system sorbose subfamily IIB component SDE12394_RS03610 PF03609 PTS system sorbose-specific iic component SDE12394_RS03615 PF03613 PTS system mannose/fructose/sorbose family IID component SDE12394_RS03625 PF01197 Ribosomal protein L31 SDE12394_RS03630 PF13936 Helix-turn-helix domain SDE12394_RS03635 PF01368 DHH family SDE12394_RS03635 PF02272 DHHA1 domain SDE12394_RS03640 PF13673 Acetyltransferase (GNAT) domain SDE12394_RS03645 PF02798 Glutathione S-transferase, N-terminal domain SDE12394_RS03650 PF00962 Adenosine/AMP deaminase SDE12394_RS03655 PF00258 Flavodoxin SDE12394_RS03665 PF00654 Voltage gated chloride channel SDE12394_RS03670 PF01245 Ribosomal protein L19 SDE12394_RS03680 PF01098 Cell cycle protein SDE12394_RS03695 PF06160 Septation ring formation regulator, EzrA SDE12394_RS03710 PF00113 Enolase, C-terminal TIM barrel domain SDE12394_RS03710 PF03952 Enolase, N-terminal domain SDE12394_RS03740 PF00005 ABC transporter SDE12394_RS03760 PF06177 QueT transporter SDE12394_RS03765 PF01653 NAD-dependent DNA ligase adenylation domain SDE12394_RS03765 PF00533 BRCA1 C Terminus (BRCT) domain SDE12394_RS03765 PF12826 Helix-hairpin-helix motif SDE12394_RS03765 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SDE12394_RS03765 PF03120 NAD-dependent DNA ligase OB-fold domain SDE12394_RS03770 PF00781 Diacylglycerol kinase catalytic domain SDE12394_RS03775 PF00128 Alpha amylase, catalytic domain SDE12394_RS03775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDE12394_RS03775 PF17999 Pullulanase N1-terminal domain SDE12394_RS03780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDE12394_RS03780 PF02806 Alpha amylase, C-terminal all-beta domain SDE12394_RS03780 PF00128 Alpha amylase, catalytic domain SDE12394_RS03790 PF00483 Nucleotidyl transferase SDE12394_RS03795 PF08323 Starch synthase catalytic domain SDE12394_RS03795 PF00534 Glycosyl transferases group 1 SDE12394_RS03800 PF00137 ATP synthase subunit C SDE12394_RS03805 PF00119 ATP synthase A chain SDE12394_RS03810 PF00430 ATP synthase B/B' CF(0) SDE12394_RS03815 PF00213 ATP synthase delta (OSCP) subunit SDE12394_RS03820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDE12394_RS03820 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDE12394_RS03820 PF00306 ATP synthase alpha/beta chain, C terminal domain SDE12394_RS03825 PF00231 ATP synthase SDE12394_RS03830 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDE12394_RS03830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDE12394_RS03835 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SDE12394_RS03835 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SDE12394_RS03845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDE12394_RS03855 PF01223 DNA/RNA non-specific endonuclease SDE12394_RS03860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SDE12394_RS03860 PF01409 tRNA synthetases class II core domain (F) SDE12394_RS03865 PF03483 B3/4 domain SDE12394_RS03865 PF03147 Ferredoxin-fold anticodon binding domain SDE12394_RS03865 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SDE12394_RS03865 PF01588 Putative tRNA binding domain SDE12394_RS03865 PF03484 tRNA synthetase B5 domain SDE12394_RS03880 PF02687 FtsX-like permease family SDE12394_RS03885 PF00005 ABC transporter SDE12394_RS03890 PF04228 Putative neutral zinc metallopeptidase SDE12394_RS03900 PF00580 UvrD/REP helicase N-terminal domain SDE12394_RS03900 PF12705 PD-(D/E)XK nuclease superfamily SDE12394_RS03900 PF13361 UvrD-like helicase C-terminal domain SDE12394_RS03905 PF00155 Aminotransferase class I and II SDE12394_RS03910 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDE12394_RS03915 PF01165 Ribosomal protein S21 SDE12394_RS03920 PF01741 Large-conductance mechanosensitive channel, MscL SDE12394_RS03930 PF04545 Sigma-70, region 4 SDE12394_RS03930 PF04539 Sigma-70 region 3 SDE12394_RS03930 PF04542 Sigma-70 region 2 SDE12394_RS03930 PF00140 Sigma-70 factor, region 1.2 SDE12394_RS03930 PF03979 Sigma-70 factor, region 1.1 SDE12394_RS03935 PF01883 Iron-sulfur cluster assembly protein SDE12394_RS03940 PF04321 RmlD substrate binding domain SDE12394_RS03950 PF00535 Glycosyl transferase family 2 SDE12394_RS03950 PF01501 Glycosyl transferase family 8 SDE12394_RS03960 PF00005 ABC transporter SDE12394_RS03990 PF00535 Glycosyl transferase family 2 SDE12394_RS04005 PF16363 GDP-mannose 4,6 dehydratase SDE12394_RS04015 PF07687 Peptidase dimerisation domain SDE12394_RS04015 PF01546 Peptidase family M20/M25/M40 SDE12394_RS04035 PF02224 Cytidylate kinase SDE12394_RS04040 PF00707 Translation initiation factor IF-3, C-terminal domain SDE12394_RS04040 PF05198 Translation initiation factor IF-3, N-terminal domain SDE12394_RS04045 PF01632 Ribosomal protein L35 SDE12394_RS04050 PF00453 Ribosomal protein L20 SDE12394_RS04060 PF10672 S-adenosylmethionine-dependent methyltransferase SDE12394_RS04060 PF17785 PUA-like domain SDE12394_RS04065 PF01487 Type I 3-dehydroquinase SDE12394_RS04070 PF01264 Chorismate synthase SDE12394_RS04075 PF06133 Control of competence regulator ComK, YlbF/YmcA SDE12394_RS04080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS04080 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS04085 PF02875 Mur ligase family, glutamate ligase domain SDE12394_RS04085 PF08245 Mur ligase middle domain SDE12394_RS04095 PF00266 Aminotransferase class-V SDE12394_RS04100 PF02568 Thiamine biosynthesis protein (ThiI) SDE12394_RS04100 PF02926 THUMP domain SDE12394_RS04105 PF09587 Bacterial capsule synthesis protein PGA_cap SDE12394_RS04125 PF01016 Ribosomal L27 protein SDE12394_RS04130 PF03466 LysR substrate binding domain SDE12394_RS04130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDE12394_RS04135 PF01252 Signal peptidase (SPase) II SDE12394_RS04140 PF01479 S4 domain SDE12394_RS04140 PF00849 RNA pseudouridylate synthase SDE12394_RS04150 PF00156 Phosphoribosyl transferase domain SDE12394_RS04155 PF00860 Permease family SDE12394_RS04160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDE12394_RS04160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDE12394_RS04165 PF00117 Glutamine amidotransferase class-I SDE12394_RS04165 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SDE12394_RS04170 PF02142 MGS-like domain SDE12394_RS04170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDE12394_RS04170 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SDE12394_RS04175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDE12394_RS04180 PF00005 ABC transporter SDE12394_RS04185 PF12704 MacB-like periplasmic core domain SDE12394_RS04185 PF02687 FtsX-like permease family SDE12394_RS04200 PF00886 Ribosomal protein S16 SDE12394_RS04215 PF01782 RimM N-terminal domain SDE12394_RS04215 PF05239 PRC-barrel domain SDE12394_RS04220 PF01746 tRNA (Guanine-1)-methyltransferase SDE12394_RS04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS04235 PF08546 Ketopantoate reductase PanE/ApbA C terminal SDE12394_RS04235 PF02558 Ketopantoate reductase PanE/ApbA SDE12394_RS04240 PF08220 DeoR-like helix-turn-helix domain SDE12394_RS04240 PF00455 DeoR C terminal sensor domain SDE12394_RS04245 PF00294 pfkB family carbohydrate kinase SDE12394_RS04250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDE12394_RS04250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS04255 PF01476 LysM domain SDE12394_RS04255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDE12394_RS04260 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDE12394_RS04260 PF01476 LysM domain SDE12394_RS04275 PF02645 Uncharacterised protein, DegV family COG1307 SDE12394_RS04280 PF12627 Probable RNA and SrmB- binding site of polymerase A SDE12394_RS04280 PF01743 Poly A polymerase head domain SDE12394_RS04280 PF13735 tRNA nucleotidyltransferase domain 2 putative SDE12394_RS04285 PF12848 ABC transporter SDE12394_RS04285 PF00005 ABC transporter SDE12394_RS04285 PF16326 ABC transporter C-terminal domain SDE12394_RS04290 PF00005 ABC transporter SDE12394_RS04290 PF00664 ABC transporter transmembrane region SDE12394_RS04295 PF00664 ABC transporter transmembrane region SDE12394_RS04295 PF00005 ABC transporter SDE12394_RS04300 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SDE12394_RS04300 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SDE12394_RS04305 PF01327 Polypeptide deformylase SDE12394_RS04310 PF02872 5'-nucleotidase, C-terminal domain SDE12394_RS04310 PF17936 Bacterial Ig domain SDE12394_RS04310 PF00149 Calcineurin-like phosphoesterase SDE12394_RS04320 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS04320 PF00072 Response regulator receiver domain SDE12394_RS04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS04325 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS04330 PF10509 Galactokinase galactose-binding signature SDE12394_RS04330 PF08544 GHMP kinases C terminal SDE12394_RS04330 PF00288 GHMP kinases N terminal domain SDE12394_RS04345 PF01070 FMN-dependent dehydrogenase SDE12394_RS04355 PF00746 LPXTG cell wall anchor motif SDE12394_RS04355 PF17961 Bacterial Ig domain SDE12394_RS04355 PF04650 YSIRK type signal peptide SDE12394_RS04355 PF17210 SdrD B-like domain SDE12394_RS04355 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SDE12394_RS04370 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SDE12394_RS04375 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SDE12394_RS04375 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SDE12394_RS04380 PF00303 Thymidylate synthase SDE12394_RS04385 PF00186 Dihydrofolate reductase SDE12394_RS04395 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS04395 PF07724 AAA domain (Cdc48 subfamily) SDE12394_RS04395 PF06689 ClpX C4-type zinc finger SDE12394_RS04400 PF01926 50S ribosome-binding GTPase SDE12394_RS04410 PF07724 AAA domain (Cdc48 subfamily) SDE12394_RS04410 PF17871 AAA lid domain SDE12394_RS04410 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS04410 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS04415 PF00466 Ribosomal protein L10 SDE12394_RS04420 PF16320 Ribosomal protein L7/L12 dimerisation domain SDE12394_RS04420 PF00542 Ribosomal protein L7/L12 C-terminal domain SDE12394_RS04430 PF00145 C-5 cytosine-specific DNA methylase SDE12394_RS04500 PF18652 Adhesin P1 N-terminal domain SDE12394_RS04500 PF16364 Cell surface antigen C-terminus SDE12394_RS04500 PF06696 Streptococcal surface antigen repeat SDE12394_RS04500 PF18652 Adhesin P1 N-terminal domain SDE12394_RS04500 PF08363 Glucan-binding protein C SDE12394_RS04500 PF06696 Streptococcal surface antigen repeat SDE12394_RS04500 PF17998 Cell surface antigen I/II C2 terminal domain SDE12394_RS04500 PF08363 Glucan-binding protein C SDE12394_RS04500 PF17998 Cell surface antigen I/II C2 terminal domain SDE12394_RS04500 PF16364 Cell surface antigen C-terminus SDE12394_RS04565 PF11798 IMS family HHH motif SDE12394_RS04565 PF11799 impB/mucB/samB family C-terminal domain SDE12394_RS04565 PF00817 impB/mucB/samB family SDE12394_RS04570 PF00717 Peptidase S24-like SDE12394_RS04570 PF01381 Helix-turn-helix SDE12394_RS04590 PF03965 Penicillinase repressor SDE12394_RS04595 PF00403 Heavy-metal-associated domain SDE12394_RS04600 PF00403 Heavy-metal-associated domain SDE12394_RS04625 PF01022 Bacterial regulatory protein, arsR family SDE12394_RS04635 PF13333 Integrase core domain SDE12394_RS04635 PF00665 Integrase core domain SDE12394_RS04655 PF03432 Relaxase/Mobilisation nuclease domain SDE12394_RS04660 PF01381 Helix-turn-helix SDE12394_RS04670 PF13495 Phage integrase, N-terminal SAM-like domain SDE12394_RS04670 PF00589 Phage integrase family SDE12394_RS04675 PF07943 Penicillin-binding protein 5, C-terminal domain SDE12394_RS04675 PF00768 D-alanyl-D-alanine carboxypeptidase SDE12394_RS04680 PF01522 Polysaccharide deacetylase SDE12394_RS04685 PF03447 Homoserine dehydrogenase, NAD binding domain SDE12394_RS04685 PF00742 Homoserine dehydrogenase SDE12394_RS04690 PF08544 GHMP kinases C terminal SDE12394_RS04690 PF00288 GHMP kinases N terminal domain SDE12394_RS04695 PF08245 Mur ligase middle domain SDE12394_RS04695 PF02875 Mur ligase family, glutamate ligase domain SDE12394_RS04700 PF01227 GTP cyclohydrolase I SDE12394_RS04705 PF00809 Pterin binding enzyme SDE12394_RS04710 PF02152 Dihydroneopterin aldolase SDE12394_RS04715 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SDE12394_RS04720 PF01565 FAD binding domain SDE12394_RS04720 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SDE12394_RS04725 PF00005 ABC transporter SDE12394_RS04725 PF08402 TOBE domain SDE12394_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS04735 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS04740 PF13416 Bacterial extracellular solute-binding protein SDE12394_RS04745 PF00072 Response regulator receiver domain SDE12394_RS04750 PF00989 PAS fold SDE12394_RS04750 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SDE12394_RS04750 PF17203 Single cache domain 3 SDE12394_RS04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS04755 PF03390 2-hydroxycarboxylate transporter family SDE12394_RS04760 PF03949 Malic enzyme, NAD binding domain SDE12394_RS04760 PF00390 Malic enzyme, N-terminal domain SDE12394_RS04765 PF00654 Voltage gated chloride channel SDE12394_RS04770 PF12833 Helix-turn-helix domain SDE12394_RS04770 PF02311 AraC-like ligand binding domain SDE12394_RS04780 PF01594 AI-2E family transporter SDE12394_RS04785 PF04002 RadC-like JAB domain SDE12394_RS04790 PF07722 Peptidase C26 SDE12394_RS04795 PF02629 CoA binding domain SDE12394_RS04795 PF06971 Putative DNA-binding protein N-terminus SDE12394_RS04810 PF00266 Aminotransferase class-V SDE12394_RS04815 PF14572 Phosphoribosyl synthetase-associated domain SDE12394_RS04815 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SDE12394_RS04830 PF01513 ATP-NAD kinase SDE12394_RS04840 PF01515 Phosphate acetyl/butaryl transferase SDE12394_RS04845 PF00106 short chain dehydrogenase SDE12394_RS04855 PF00005 ABC transporter SDE12394_RS04855 PF00571 CBS domain SDE12394_RS04860 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS04865 PF00478 IMP dehydrogenase / GMP reductase domain SDE12394_RS04870 PF00156 Phosphoribosyl transferase domain SDE12394_RS04875 PF00860 Permease family SDE12394_RS04880 PF02424 ApbE family SDE12394_RS04885 PF01361 Tautomerase enzyme SDE12394_RS04890 PF00265 Thymidine kinase SDE12394_RS04895 PF03462 PCRF domain SDE12394_RS04895 PF00472 RF-1 domain SDE12394_RS04900 PF05175 Methyltransferase small domain SDE12394_RS04905 PF01300 Telomere recombination SDE12394_RS04915 PF00464 Serine hydroxymethyltransferase SDE12394_RS04930 PF00664 ABC transporter transmembrane region SDE12394_RS04930 PF00005 ABC transporter SDE12394_RS04935 PF00005 ABC transporter SDE12394_RS04935 PF00664 ABC transporter transmembrane region SDE12394_RS04940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS04945 PF01872 RibD C-terminal domain SDE12394_RS04950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SDE12394_RS04950 PF00056 lactate/malate dehydrogenase, NAD binding domain SDE12394_RS04955 PF03989 DNA gyrase C-terminal domain, beta-propeller SDE12394_RS04955 PF00521 DNA gyrase/topoisomerase IV, subunit A SDE12394_RS04960 PF04203 Sortase domain SDE12394_RS04965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDE12394_RS04980 PF01297 Zinc-uptake complex component A periplasmic SDE12394_RS05015 PF00005 ABC transporter SDE12394_RS05020 PF12704 MacB-like periplasmic core domain SDE12394_RS05020 PF02687 FtsX-like permease family SDE12394_RS05025 PF00072 Response regulator receiver domain SDE12394_RS05025 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS05035 PF05257 CHAP domain SDE12394_RS05035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDE12394_RS05065 PF01297 Zinc-uptake complex component A periplasmic SDE12394_RS05075 PF05532 CsbD-like SDE12394_RS05080 PF00005 ABC transporter SDE12394_RS05085 PF00005 ABC transporter SDE12394_RS05085 PF12558 ATP-binding cassette cobalt transporter SDE12394_RS05090 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05095 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDE12394_RS05115 PF13936 Helix-turn-helix domain SDE12394_RS05120 PF02388 FemAB family SDE12394_RS05125 PF00999 Sodium/hydrogen exchanger family SDE12394_RS05135 PF02540 NAD synthase SDE12394_RS05135 PF00958 GMP synthase C terminal domain SDE12394_RS05135 PF00117 Glutamine amidotransferase class-I SDE12394_RS05145 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS05145 PF07702 UTRA domain SDE12394_RS05150 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SDE12394_RS05155 PF02978 Signal peptide binding domain SDE12394_RS05155 PF02881 SRP54-type protein, helical bundle domain SDE12394_RS05155 PF00448 SRP54-type protein, GTPase domain SDE12394_RS05175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDE12394_RS05175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDE12394_RS05185 PF16736 Single Cache-like SDE12394_RS05185 PF00989 PAS fold SDE12394_RS05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS05185 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS05190 PF07883 Cupin domain SDE12394_RS05200 PF13495 Phage integrase, N-terminal SAM-like domain SDE12394_RS05200 PF00589 Phage integrase family SDE12394_RS05215 PF02424 ApbE family SDE12394_RS05220 PF04205 FMN-binding domain SDE12394_RS05225 PF00348 Polyprenyl synthetase SDE12394_RS05230 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS05240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS05245 PF00072 Response regulator receiver domain SDE12394_RS05245 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS05255 PF00005 ABC transporter SDE12394_RS05260 PF03572 Peptidase family S41 SDE12394_RS05270 PF08218 Citrate lyase ligase C-terminal domain SDE12394_RS05275 PF00364 Biotin-requiring enzyme SDE12394_RS05275 PF00682 HMGL-like SDE12394_RS05275 PF02436 Conserved carboxylase domain SDE12394_RS05285 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SDE12394_RS05290 PF04223 Citrate lyase, alpha subunit (CitF) SDE12394_RS05295 PF03328 HpcH/HpaI aldolase/citrate lyase family SDE12394_RS05300 PF06857 Malonate decarboxylase delta subunit (MdcD) SDE12394_RS05310 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SDE12394_RS05315 PF00364 Biotin-requiring enzyme SDE12394_RS05325 PF03600 Citrate transporter SDE12394_RS05335 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SDE12394_RS05345 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SDE12394_RS05350 PF00364 Biotin-requiring enzyme SDE12394_RS05360 PF02436 Conserved carboxylase domain SDE12394_RS05360 PF00364 Biotin-requiring enzyme SDE12394_RS05360 PF00682 HMGL-like SDE12394_RS05365 PF01134 Glucose inhibited division protein A SDE12394_RS05400 PF01751 Toprim domain SDE12394_RS05400 PF01131 DNA topoisomerase SDE12394_RS05400 PF01396 Topoisomerase DNA binding C4 zinc finger SDE12394_RS05405 PF02481 DNA recombination-mediator protein A SDE12394_RS05405 PF18255 DNA processing protein A sterile alpha motif domain SDE12394_RS05410 PF01351 Ribonuclease HII SDE12394_RS05415 PF01926 50S ribosome-binding GTPase SDE12394_RS05445 PF01381 Helix-turn-helix SDE12394_RS05455 PF03006 Haemolysin-III related SDE12394_RS05470 PF05532 CsbD-like SDE12394_RS05475 PF12848 ABC transporter SDE12394_RS05475 PF00005 ABC transporter SDE12394_RS05480 PF02821 Staphylokinase/Streptokinase family SDE12394_RS05495 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS05495 PF00155 Aminotransferase class I and II SDE12394_RS05500 PF13597 Anaerobic ribonucleoside-triphosphate reductase SDE12394_RS05500 PF03477 ATP cone domain SDE12394_RS05505 PF02774 Semialdehyde dehydrogenase, dimerisation domain SDE12394_RS05505 PF01118 Semialdehyde dehydrogenase, NAD binding domain SDE12394_RS05510 PF13091 PLD-like domain SDE12394_RS05530 PF13683 Integrase core domain SDE12394_RS05530 PF01610 Transposase SDE12394_RS05545 PF01268 Formate--tetrahydrofolate ligase SDE12394_RS05560 PF01661 Macro domain SDE12394_RS05565 PF01597 Glycine cleavage H-protein SDE12394_RS05570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SDE12394_RS05575 PF03099 Biotin/lipoate A/B protein ligase family SDE12394_RS05580 PF02441 Flavoprotein SDE12394_RS05580 PF04127 DNA / pantothenate metabolism flavoprotein SDE12394_RS05585 PF02441 Flavoprotein SDE12394_RS05590 PF12822 ECF transporter, substrate-specific component SDE12394_RS05595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDE12394_RS05595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDE12394_RS05595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDE12394_RS05595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDE12394_RS05600 PF02653 Branched-chain amino acid transport system / permease component SDE12394_RS05605 PF02653 Branched-chain amino acid transport system / permease component SDE12394_RS05610 PF00005 ABC transporter SDE12394_RS05615 PF02608 ABC transporter substrate-binding protein PnrA-like SDE12394_RS05620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDE12394_RS05625 PF01791 DeoC/LacD family aldolase SDE12394_RS05630 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SDE12394_RS05630 PF02885 Glycosyl transferase family, helical bundle domain SDE12394_RS05630 PF00591 Glycosyl transferase family, a/b domain SDE12394_RS05635 PF05175 Methyltransferase small domain SDE12394_RS05640 PF00485 Phosphoribulokinase / Uridine kinase family SDE12394_RS05645 PF01649 Ribosomal protein S20 SDE12394_RS05650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS05650 PF00512 His Kinase A (phospho-acceptor) domain SDE12394_RS05655 PF00486 Transcriptional regulatory protein, C terminal SDE12394_RS05655 PF00072 Response regulator receiver domain SDE12394_RS05660 PF01433 Peptidase family M1 domain SDE12394_RS05660 PF11838 ERAP1-like C-terminal domain SDE12394_RS05665 PF01895 PhoU domain SDE12394_RS05670 PF00005 ABC transporter SDE12394_RS05675 PF00005 ABC transporter SDE12394_RS05680 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05685 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05690 PF12849 PBP superfamily domain SDE12394_RS05695 PF17126 RsmF rRNA methyltransferase first C-terminal domain SDE12394_RS05695 PF01189 16S rRNA methyltransferase RsmB/F SDE12394_RS05695 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SDE12394_RS05700 PF00459 Inositol monophosphatase family SDE12394_RS05705 PF05256 Uncharacterised protein family (UPF0223) SDE12394_RS05710 PF03960 ArsC family SDE12394_RS05715 PF01687 Riboflavin kinase SDE12394_RS05715 PF06574 FAD synthetase SDE12394_RS05720 PF16198 tRNA pseudouridylate synthase B C-terminal domain SDE12394_RS05720 PF01509 TruB family pseudouridylate synthase (N terminal domain) SDE12394_RS05745 PF12704 MacB-like periplasmic core domain SDE12394_RS05745 PF02687 FtsX-like permease family SDE12394_RS05745 PF00005 ABC transporter SDE12394_RS05760 PF03780 Asp23 family, cell envelope-related function SDE12394_RS05765 PF05532 CsbD-like SDE12394_RS05770 PF03780 Asp23 family, cell envelope-related function SDE12394_RS05785 PF04226 Transglycosylase associated protein SDE12394_RS05790 PF13361 UvrD-like helicase C-terminal domain SDE12394_RS05790 PF00580 UvrD/REP helicase N-terminal domain SDE12394_RS05795 PF01235 Sodium:alanine symporter family SDE12394_RS05800 PF16916 Dimerisation domain of Zinc Transporter SDE12394_RS05800 PF01545 Cation efflux family SDE12394_RS05810 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDE12394_RS05815 PF00005 ABC transporter SDE12394_RS05820 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05825 PF03831 PhnA domain SDE12394_RS05825 PF08274 PhnA Zinc-Ribbon SDE12394_RS05830 PF01380 SIS domain SDE12394_RS05835 PF10502 Signal peptidase, peptidase S26 SDE12394_RS05840 PF00224 Pyruvate kinase, barrel domain SDE12394_RS05840 PF02887 Pyruvate kinase, alpha/beta domain SDE12394_RS05845 PF00365 Phosphofructokinase SDE12394_RS05850 PF01336 OB-fold nucleic acid binding domain SDE12394_RS05850 PF02811 PHP domain SDE12394_RS05850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDE12394_RS05850 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDE12394_RS05850 PF14579 Helix-hairpin-helix motif SDE12394_RS05855 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS05860 PF00005 ABC transporter SDE12394_RS05870 PF09335 SNARE associated Golgi protein SDE12394_RS05890 PF00575 S1 RNA binding domain SDE12394_RS05910 PF01063 Amino-transferase class IV SDE12394_RS05915 PF03989 DNA gyrase C-terminal domain, beta-propeller SDE12394_RS05915 PF00521 DNA gyrase/topoisomerase IV, subunit A SDE12394_RS05925 PF00986 DNA gyrase B subunit, carboxyl terminus SDE12394_RS05925 PF00204 DNA gyrase B SDE12394_RS05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS05925 PF01751 Toprim domain SDE12394_RS05930 PF02660 Glycerol-3-phosphate acyltransferase SDE12394_RS05935 PF01979 Amidohydrolase family SDE12394_RS05945 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS05950 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDE12394_RS05955 PF01425 Amidase SDE12394_RS05960 PF13276 HTH-like domain SDE12394_RS05960 PF00665 Integrase core domain SDE12394_RS05960 PF13333 Integrase core domain SDE12394_RS05970 PF00156 Phosphoribosyl transferase domain SDE12394_RS05975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDE12394_RS05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDE12394_RS05985 PF03466 LysR substrate binding domain SDE12394_RS05995 PF01048 Phosphorylase superfamily SDE12394_RS06000 PF01048 Phosphorylase superfamily SDE12394_RS06005 PF03960 ArsC family SDE12394_RS06010 PF01676 Metalloenzyme superfamily SDE12394_RS06015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SDE12394_RS06020 PF10396 GTP-binding protein TrmE N-terminus SDE12394_RS06020 PF12631 MnmE helical domain SDE12394_RS06020 PF01926 50S ribosome-binding GTPase SDE12394_RS06030 PF01546 Peptidase family M20/M25/M40 SDE12394_RS06035 PF00881 Nitroreductase family SDE12394_RS06040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDE12394_RS06040 PF00205 Thiamine pyrophosphate enzyme, central domain SDE12394_RS06040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDE12394_RS06045 PF00205 Thiamine pyrophosphate enzyme, central domain SDE12394_RS06045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDE12394_RS06045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDE12394_RS06060 PF08459 UvrC Helix-hairpin-helix N-terminal SDE12394_RS06060 PF02151 UvrB/uvrC motif SDE12394_RS06060 PF01541 GIY-YIG catalytic domain SDE12394_RS06070 PF00171 Aldehyde dehydrogenase family SDE12394_RS06075 PF13419 Haloacid dehalogenase-like hydrolase SDE12394_RS06085 PF14602 Hexapeptide repeat of succinyl-transferase SDE12394_RS06085 PF12464 Maltose acetyltransferase SDE12394_RS06090 PF13419 Haloacid dehalogenase-like hydrolase SDE12394_RS06105 PF12833 Helix-turn-helix domain SDE12394_RS06105 PF00072 Response regulator receiver domain SDE12394_RS06110 PF06580 Histidine kinase SDE12394_RS06110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS06115 PF03613 PTS system mannose/fructose/sorbose family IID component SDE12394_RS06120 PF03609 PTS system sorbose-specific iic component SDE12394_RS06125 PF03830 PTS system sorbose subfamily IIB component SDE12394_RS06135 PF03601 Conserved hypothetical protein 698 SDE12394_RS06150 PF01721 Class II bacteriocin SDE12394_RS06160 PF01641 SelR domain SDE12394_RS06165 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS06165 PF03144 Elongation factor Tu domain 2 SDE12394_RS06165 PF00679 Elongation factor G C-terminus SDE12394_RS06165 PF06421 GTP-binding protein LepA C-terminus SDE12394_RS06165 PF14492 Elongation Factor G, domain II SDE12394_RS06170 PF00334 Nucleoside diphosphate kinase SDE12394_RS06175 PF09711 CRISPR-associated protein (Cas_Csn2) SDE12394_RS06180 PF09827 CRISPR associated protein Cas2 SDE12394_RS06185 PF01867 CRISPR associated protein Cas1 SDE12394_RS06190 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 SDE12394_RS06190 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 SDE12394_RS06190 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 SDE12394_RS06190 PF13395 HNH endonuclease SDE12394_RS06210 PF04055 Radical SAM superfamily SDE12394_RS06210 PF06969 HemN C-terminal domain SDE12394_RS06230 PF02457 DisA bacterial checkpoint controller nucleotide-binding SDE12394_RS06235 PF08245 Mur ligase middle domain SDE12394_RS06235 PF08353 Domain of unknown function (DUF1727) SDE12394_RS06245 PF03099 Biotin/lipoate A/B protein ligase family SDE12394_RS06245 PF10437 Bacterial lipoate protein ligase C-terminus SDE12394_RS06255 PF10400 Virulence activator alpha C-term SDE12394_RS06255 PF03551 Transcriptional regulator PadR-like family SDE12394_RS06260 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS06260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS06270 PF02817 e3 binding domain SDE12394_RS06270 PF00364 Biotin-requiring enzyme SDE12394_RS06270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SDE12394_RS06275 PF02779 Transketolase, pyrimidine binding domain SDE12394_RS06275 PF02780 Transketolase, C-terminal domain SDE12394_RS06275 PF00364 Biotin-requiring enzyme SDE12394_RS06280 PF00676 Dehydrogenase E1 component SDE12394_RS06285 PF00005 ABC transporter SDE12394_RS06285 PF16326 ABC transporter C-terminal domain SDE12394_RS06285 PF12848 ABC transporter SDE12394_RS06295 PF00756 Putative esterase SDE12394_RS06300 PF17770 Ribonuclease J C-terminal domain SDE12394_RS06300 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SDE12394_RS06300 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS06305 PF12558 ATP-binding cassette cobalt transporter SDE12394_RS06305 PF00005 ABC transporter SDE12394_RS06335 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SDE12394_RS06365 PF05670 NFACT protein RNA binding domain SDE12394_RS06375 PF01594 AI-2E family transporter SDE12394_RS06380 PF00293 NUDIX domain SDE12394_RS06395 PF16363 GDP-mannose 4,6 dehydratase SDE12394_RS06400 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SDE12394_RS06405 PF00483 Nucleotidyl transferase SDE12394_RS06410 PF01266 FAD dependent oxidoreductase SDE12394_RS06415 PF02535 ZIP Zinc transporter SDE12394_RS06420 PF01784 NIF3 (NGG1p interacting factor 3) SDE12394_RS06425 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SDE12394_RS06430 PF00730 HhH-GPD superfamily base excision DNA repair protein SDE12394_RS06430 PF10576 Iron-sulfur binding domain of endonuclease III SDE12394_RS06430 PF00633 Helix-hairpin-helix motif SDE12394_RS06440 PF00156 Phosphoribosyl transferase domain SDE12394_RS06445 PF02272 DHHA1 domain SDE12394_RS06445 PF01368 DHH family SDE12394_RS06445 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SDE12394_RS06445 PF17768 RecJ OB domain SDE12394_RS06450 PF00106 short chain dehydrogenase SDE12394_RS06455 PF12706 Beta-lactamase superfamily domain SDE12394_RS06455 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS06465 PF01926 50S ribosome-binding GTPase SDE12394_RS06465 PF13167 GTP-binding GTPase N-terminal SDE12394_RS06465 PF16360 GTP-binding GTPase Middle Region SDE12394_RS06480 PF13417 Glutathione S-transferase, N-terminal domain SDE12394_RS06485 PF00485 Phosphoribulokinase / Uridine kinase family SDE12394_RS06490 PF00581 Rhodanese-like domain SDE12394_RS06490 PF12368 Rhodanase C-terminal SDE12394_RS06490 PF17773 UPF0176 acylphosphatase like domain SDE12394_RS06500 PF03358 NADPH-dependent FMN reductase SDE12394_RS06505 PF00343 Carbohydrate phosphorylase SDE12394_RS06510 PF02446 4-alpha-glucanotransferase SDE12394_RS06520 PF13936 Helix-turn-helix domain SDE12394_RS06525 PF13416 Bacterial extracellular solute-binding protein SDE12394_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS06535 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS06540 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS06550 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS06560 PF02903 Alpha amylase, N-terminal ig-like domain SDE12394_RS06560 PF00128 Alpha amylase, catalytic domain SDE12394_RS06565 PF13416 Bacterial extracellular solute-binding protein SDE12394_RS06575 PF00550 Phosphopantetheine attachment site SDE12394_RS06580 PF03062 MBOAT, membrane-bound O-acyltransferase family SDE12394_RS06585 PF13193 AMP-binding enzyme C-terminal domain SDE12394_RS06585 PF00501 AMP-binding enzyme SDE12394_RS06590 PF00271 Helicase conserved C-terminal domain SDE12394_RS06590 PF04851 Type III restriction enzyme, res subunit SDE12394_RS06590 PF02151 UvrB/uvrC motif SDE12394_RS06590 PF12344 Ultra-violet resistance protein B SDE12394_RS06590 PF17757 UvrB interaction domain SDE12394_RS06595 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS06600 PF00005 ABC transporter SDE12394_RS06605 PF02378 Phosphotransferase system, EIIC SDE12394_RS06615 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SDE12394_RS06620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS06625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDE12394_RS06625 PF00874 PRD domain SDE12394_RS06625 PF05043 Mga helix-turn-helix domain SDE12394_RS06625 PF08279 HTH domain SDE12394_RS06635 PF00232 Glycosyl hydrolase family 1 SDE12394_RS06650 PF01926 50S ribosome-binding GTPase SDE12394_RS06650 PF09269 Domain of unknown function (DUF1967) SDE12394_RS06650 PF01018 GTP1/OBG SDE12394_RS06655 PF02073 Thermophilic metalloprotease (M29) SDE12394_RS06675 PF07690 Major Facilitator Superfamily SDE12394_RS06680 PF08903 Domain of unknown function (DUF1846) SDE12394_RS06685 PF03649 Uncharacterised protein family (UPF0014) SDE12394_RS06690 PF00005 ABC transporter SDE12394_RS06705 PF03180 NLPA lipoprotein SDE12394_RS06730 PF00145 C-5 cytosine-specific DNA methylase SDE12394_RS06740 PF02796 Helix-turn-helix domain of resolvase SDE12394_RS06740 PF00239 Resolvase, N terminal domain SDE12394_RS06755 PF01554 MatE SDE12394_RS06760 PF00005 ABC transporter SDE12394_RS06780 PF00664 ABC transporter transmembrane region SDE12394_RS06780 PF08021 Siderophore-interacting FAD-binding domain SDE12394_RS06780 PF04954 Siderophore-interacting protein SDE12394_RS06780 PF00005 ABC transporter SDE12394_RS06795 PF03432 Relaxase/Mobilisation nuclease domain SDE12394_RS06835 PF01131 DNA topoisomerase SDE12394_RS06835 PF01751 Toprim domain SDE12394_RS06905 PF05958 tRNA (Uracil-5-)-methyltransferase SDE12394_RS06910 PF03816 Cell envelope-related transcriptional attenuator domain SDE12394_RS06915 PF01202 Shikimate kinase SDE12394_RS06920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDE12394_RS06930 PF00557 Metallopeptidase family M24 SDE12394_RS06935 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS06935 PF00571 CBS domain SDE12394_RS06935 PF03061 Thioesterase superfamily SDE12394_RS06935 PF07085 DRTGG domain SDE12394_RS06945 PF17573 GA-like domain SDE12394_RS06945 PF00746 LPXTG cell wall anchor motif SDE12394_RS06945 PF01378 B domain SDE12394_RS06950 PF00933 Glycosyl hydrolase family 3 N terminal domain SDE12394_RS06960 PF00106 short chain dehydrogenase SDE12394_RS06965 PF03786 D-mannonate dehydratase (UxuA) SDE12394_RS06970 PF02614 Glucuronate isomerase SDE12394_RS06975 PF01081 KDPG and KHG aldolase SDE12394_RS06980 PF07729 FCD domain SDE12394_RS06980 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS06985 PF02837 Glycosyl hydrolases family 2, sugar binding domain SDE12394_RS06985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SDE12394_RS06985 PF00703 Glycosyl hydrolases family 2 SDE12394_RS07000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDE12394_RS07005 PF00438 S-adenosylmethionine synthetase, N-terminal domain SDE12394_RS07005 PF02772 S-adenosylmethionine synthetase, central domain SDE12394_RS07005 PF02773 S-adenosylmethionine synthetase, C-terminal domain SDE12394_RS07015 PF03099 Biotin/lipoate A/B protein ligase family SDE12394_RS07015 PF08279 HTH domain SDE12394_RS07015 PF02237 Biotin protein ligase C terminal domain SDE12394_RS07020 PF12169 DNA polymerase III subunits gamma and tau domain III SDE12394_RS07025 PF13185 GAF domain SDE12394_RS07040 PF00485 Phosphoribulokinase / Uridine kinase family SDE12394_RS07045 PF00270 DEAD/DEAH box helicase SDE12394_RS07045 PF00271 Helicase conserved C-terminal domain SDE12394_RS07050 PF01522 Polysaccharide deacetylase SDE12394_RS07050 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SDE12394_RS07055 PF00171 Aldehyde dehydrogenase family SDE12394_RS07060 PF00391 PEP-utilising enzyme, mobile domain SDE12394_RS07060 PF02896 PEP-utilising enzyme, TIM barrel domain SDE12394_RS07060 PF05524 PEP-utilising enzyme, N-terminal SDE12394_RS07065 PF00381 PTS HPr component phosphorylation site SDE12394_RS07070 PF00462 Glutaredoxin SDE12394_RS07075 PF08343 Ribonucleotide reductase N-terminal SDE12394_RS07075 PF00317 Ribonucleotide reductase, all-alpha domain SDE12394_RS07075 PF02867 Ribonucleotide reductase, barrel domain SDE12394_RS07080 PF00268 Ribonucleotide reductase, small chain SDE12394_RS07100 PF01381 Helix-turn-helix SDE12394_RS07110 PF02272 DHHA1 domain SDE12394_RS07110 PF01411 tRNA synthetases class II (A) SDE12394_RS07110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDE12394_RS07120 PF13145 PPIC-type PPIASE domain SDE12394_RS07125 PF01596 O-methyltransferase SDE12394_RS07130 PF07690 Major Facilitator Superfamily SDE12394_RS07145 PF03358 NADPH-dependent FMN reductase SDE12394_RS07150 PF08439 Oligopeptidase F SDE12394_RS07150 PF01432 Peptidase family M3 SDE12394_RS07170 PF01479 S4 domain SDE12394_RS07170 PF00849 RNA pseudouridylate synthase SDE12394_RS07175 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SDE12394_RS07180 PF02547 Queuosine biosynthesis protein SDE12394_RS07195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SDE12394_RS07195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SDE12394_RS07205 PF13567 Domain of unknown function (DUF4131) SDE12394_RS07205 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS07205 PF03772 Competence protein SDE12394_RS07210 PF10531 SLBB domain SDE12394_RS07215 PF01553 Acyltransferase SDE12394_RS07220 PF05175 Methyltransferase small domain SDE12394_RS07225 PF01541 GIY-YIG catalytic domain SDE12394_RS07230 PF02705 K+ potassium transporter SDE12394_RS07235 PF00270 DEAD/DEAH box helicase SDE12394_RS07235 PF00271 Helicase conserved C-terminal domain SDE12394_RS07240 PF03180 NLPA lipoprotein SDE12394_RS07245 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS07250 PF00005 ABC transporter SDE12394_RS07250 PF09383 NIL domain SDE12394_RS07255 PF08000 Bacterial PH domain SDE12394_RS07260 PF16658 Class II release factor RF3, C-terminal domain SDE12394_RS07260 PF03144 Elongation factor Tu domain 2 SDE12394_RS07260 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS07270 PF01225 Mur ligase family, catalytic domain SDE12394_RS07270 PF08245 Mur ligase middle domain SDE12394_RS07270 PF02875 Mur ligase family, glutamate ligase domain SDE12394_RS07275 PF01820 D-ala D-ala ligase N-terminus SDE12394_RS07275 PF07478 D-ala D-ala ligase C-terminus SDE12394_RS07280 PF13662 Toprim domain SDE12394_RS07280 PF02132 RecR protein SDE12394_RS07285 PF03717 Penicillin-binding Protein dimerisation domain SDE12394_RS07285 PF00905 Penicillin binding protein transpeptidase domain SDE12394_RS07290 PF01226 Formate/nitrite transporter SDE12394_RS07300 PF08279 HTH domain SDE12394_RS07300 PF02829 3H domain SDE12394_RS07305 PF00300 Histidine phosphatase superfamily (branch 1) SDE12394_RS07330 PF00216 Bacterial DNA-binding protein SDE12394_RS07340 PF13472 GDSL-like Lipase/Acylhydrolase family SDE12394_RS07345 PF02645 Uncharacterised protein, DegV family COG1307 SDE12394_RS07350 PF13936 Helix-turn-helix domain SDE12394_RS07360 PF13476 AAA domain SDE12394_RS07365 PF01316 Arginine repressor, DNA binding domain SDE12394_RS07365 PF02863 Arginine repressor, C-terminal domain SDE12394_RS07370 PF01479 S4 domain SDE12394_RS07370 PF01728 FtsJ-like methyltransferase SDE12394_RS07375 PF00348 Polyprenyl synthetase SDE12394_RS07380 PF02609 Exonuclease VII small subunit SDE12394_RS07385 PF02601 Exonuclease VII, large subunit SDE12394_RS07385 PF13742 OB-fold nucleic acid binding domain SDE12394_RS07390 PF01256 Carbohydrate kinase SDE12394_RS07395 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SDE12394_RS07395 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SDE12394_RS07400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDE12394_RS07400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDE12394_RS07400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDE12394_RS07400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDE12394_RS07405 PF03441 FAD binding domain of DNA photolyase SDE12394_RS07405 PF00875 DNA photolyase SDE12394_RS07415 PF17910 FeoB cytosolic helical domain SDE12394_RS07415 PF07664 Ferrous iron transport protein B C terminus SDE12394_RS07415 PF02421 Ferrous iron transport protein B SDE12394_RS07415 PF07670 Nucleoside recognition SDE12394_RS07425 PF00005 ABC transporter SDE12394_RS07430 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS07435 PF08796 Protein of unknown function (DUF1797) SDE12394_RS07440 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS07440 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS07440 PF17871 AAA lid domain SDE12394_RS07440 PF07724 AAA domain (Cdc48 subfamily) SDE12394_RS07455 PF00133 tRNA synthetases class I (I, L, M and V) SDE12394_RS07455 PF08264 Anticodon-binding domain of tRNA SDE12394_RS07460 PF05103 DivIVA protein SDE12394_RS07475 PF04472 Cell division protein SepF SDE12394_RS07480 PF01168 Alanine racemase, N-terminal domain SDE12394_RS07485 PF00091 Tubulin/FtsZ family, GTPase domain SDE12394_RS07485 PF12327 FtsZ family, C-terminal domain SDE12394_RS07490 PF11983 Membrane-attachment and polymerisation-promoting switch SDE12394_RS07490 PF02491 SHS2 domain inserted in FTSA SDE12394_RS07500 PF04101 Glycosyltransferase family 28 C-terminal domain SDE12394_RS07500 PF03033 Glycosyltransferase family 28 N-terminal domain SDE12394_RS07505 PF02875 Mur ligase family, glutamate ligase domain SDE12394_RS07505 PF08245 Mur ligase middle domain SDE12394_RS07520 PF13333 Integrase core domain SDE12394_RS07520 PF00665 Integrase core domain SDE12394_RS07520 PF13276 HTH-like domain SDE12394_RS07530 PF14492 Elongation Factor G, domain II SDE12394_RS07530 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS07530 PF03144 Elongation factor Tu domain 2 SDE12394_RS07530 PF00679 Elongation factor G C-terminus SDE12394_RS07535 PF00581 Rhodanese-like domain SDE12394_RS07540 PF00480 ROK family SDE12394_RS07560 PF00664 ABC transporter transmembrane region SDE12394_RS07560 PF00005 ABC transporter SDE12394_RS07565 PF00664 ABC transporter transmembrane region SDE12394_RS07565 PF00005 ABC transporter SDE12394_RS07575 PF04055 Radical SAM superfamily SDE12394_RS07580 PF06265 Protein of unknown function (DUF1027) SDE12394_RS07595 PF00005 ABC transporter SDE12394_RS07600 PF00005 ABC transporter SDE12394_RS07605 PF05025 RbsD / FucU transport protein family SDE12394_RS07610 PF00294 pfkB family carbohydrate kinase SDE12394_RS07615 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS07620 PF05362 Lon protease (S16) C-terminal proteolytic domain SDE12394_RS07620 PF13180 PDZ domain SDE12394_RS07625 PF01467 Cytidylyltransferase-like SDE12394_RS07635 PF03590 Aspartate-ammonia ligase SDE12394_RS07640 PF00696 Amino acid kinase family SDE12394_RS07650 PF01546 Peptidase family M20/M25/M40 SDE12394_RS07655 PF03606 C4-dicarboxylate anaerobic carrier SDE12394_RS07660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDE12394_RS07660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDE12394_RS07665 PF13673 Acetyltransferase (GNAT) domain SDE12394_RS07675 PF13545 Crp-like helix-turn-helix domain SDE12394_RS07675 PF00027 Cyclic nucleotide-binding domain SDE12394_RS07680 PF02863 Arginine repressor, C-terminal domain SDE12394_RS07680 PF01316 Arginine repressor, DNA binding domain SDE12394_RS07695 PF02743 Cache domain SDE12394_RS07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS07695 PF06580 Histidine kinase SDE12394_RS07695 PF00672 HAMP domain SDE12394_RS07700 PF00072 Response regulator receiver domain SDE12394_RS07700 PF12833 Helix-turn-helix domain SDE12394_RS07705 PF01625 Peptide methionine sulfoxide reductase SDE12394_RS07705 PF01641 SelR domain SDE12394_RS07710 PF08534 Redoxin SDE12394_RS07715 PF02683 Cytochrome C biogenesis protein transmembrane region SDE12394_RS07725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDE12394_RS07725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDE12394_RS07730 PF09827 CRISPR associated protein Cas2 SDE12394_RS07735 PF01867 CRISPR associated protein Cas1 SDE12394_RS07765 PF08264 Anticodon-binding domain of tRNA SDE12394_RS07765 PF00133 tRNA synthetases class I (I, L, M and V) SDE12394_RS07765 PF10458 Valyl tRNA synthetase tRNA binding arm SDE12394_RS07800 PF01554 MatE SDE12394_RS07810 PF01817 Chorismate mutase type II SDE12394_RS07810 PF00793 DAHP synthetase I family SDE12394_RS07815 PF01761 3-dehydroquinate synthase SDE12394_RS07840 PF08501 Shikimate dehydrogenase substrate binding domain SDE12394_RS07840 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SDE12394_RS07845 PF00703 Glycosyl hydrolases family 2 SDE12394_RS07845 PF16355 Domain of unknown function (DUF4982) SDE12394_RS07845 PF02837 Glycosyl hydrolases family 2, sugar binding domain SDE12394_RS07845 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SDE12394_RS07845 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SDE12394_RS07850 PF12833 Helix-turn-helix domain SDE12394_RS07850 PF00072 Response regulator receiver domain SDE12394_RS07855 PF00672 HAMP domain SDE12394_RS07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS07855 PF06580 Histidine kinase SDE12394_RS07855 PF02743 Cache domain SDE12394_RS07865 PF12010 Domain of unknown function (DUF3502) SDE12394_RS07870 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS07875 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS07880 PF00480 ROK family SDE12394_RS07895 PF00232 Glycosyl hydrolase family 1 SDE12394_RS07900 PF02838 Glycosyl hydrolase family 20, domain 2 SDE12394_RS07900 PF07555 beta-N-acetylglucosaminidase SDE12394_RS07905 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS07915 PF09261 Alpha mannosidase middle domain SDE12394_RS07915 PF07748 Glycosyl hydrolases family 38 C-terminal domain SDE12394_RS07915 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SDE12394_RS07915 PF01074 Glycosyl hydrolases family 38 N-terminal domain SDE12394_RS07915 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SDE12394_RS07925 PF00583 Acetyltransferase (GNAT) family SDE12394_RS07930 PF00296 Luciferase-like monooxygenase SDE12394_RS07935 PF00501 AMP-binding enzyme SDE12394_RS07935 PF13193 AMP-binding enzyme C-terminal domain SDE12394_RS07940 PF03060 Nitronate monooxygenase SDE12394_RS07945 PF00108 Thiolase, N-terminal domain SDE12394_RS07945 PF02803 Thiolase, C-terminal domain SDE12394_RS07965 PF05958 tRNA (Uracil-5-)-methyltransferase SDE12394_RS07965 PF01938 TRAM domain SDE12394_RS07970 PF02631 RecX family SDE12394_RS07975 PF04167 Protein of unknown function (DUF402) SDE12394_RS08040 PF13936 Helix-turn-helix domain SDE12394_RS08045 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SDE12394_RS08045 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SDE12394_RS08060 PF01205 Uncharacterized protein family UPF0029 SDE12394_RS08060 PF09186 Domain of unknown function (DUF1949) SDE12394_RS08065 PF00291 Pyridoxal-phosphate dependent enzyme SDE12394_RS08070 PF00575 S1 RNA binding domain SDE12394_RS08075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDE12394_RS08080 PF00196 Bacterial regulatory proteins, luxR family SDE12394_RS08080 PF00072 Response regulator receiver domain SDE12394_RS08085 PF07730 Histidine kinase SDE12394_RS08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDE12394_RS08085 PF00672 HAMP domain SDE12394_RS08095 PF03793 PASTA domain SDE12394_RS08095 PF00069 Protein kinase domain SDE12394_RS08105 PF01189 16S rRNA methyltransferase RsmB/F SDE12394_RS08105 PF01029 NusB family SDE12394_RS08110 PF02911 Formyl transferase, C-terminal domain SDE12394_RS08110 PF00551 Formyl transferase SDE12394_RS08115 PF17764 3′ DNA-binding domain (3′BD) SDE12394_RS08115 PF18074 Primosomal protein N C-terminal domain SDE12394_RS08115 PF00271 Helicase conserved C-terminal domain SDE12394_RS08115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SDE12394_RS08115 PF04851 Type III restriction enzyme, res subunit SDE12394_RS08120 PF01192 RNA polymerase Rpb6 SDE12394_RS08125 PF00625 Guanylate kinase SDE12394_RS08130 PF01966 HD domain SDE12394_RS08130 PF00013 KH domain SDE12394_RS08130 PF12072 Domain of unknown function (DUF3552) SDE12394_RS08140 PF02803 Thiolase, C-terminal domain SDE12394_RS08140 PF00108 Thiolase, N-terminal domain SDE12394_RS08145 PF01144 Coenzyme A transferase SDE12394_RS08150 PF01144 Coenzyme A transferase SDE12394_RS08165 PF02664 S-Ribosylhomocysteinase (LuxS) SDE12394_RS08170 PF18708 MapZ extracellular C-terminal domain 2 SDE12394_RS08170 PF18041 MapZ extracellular domain 1 SDE12394_RS08175 PF02926 THUMP domain SDE12394_RS08175 PF01170 Putative RNA methylase family UPF0020 SDE12394_RS08180 PF05103 DivIVA protein SDE12394_RS08185 PF06908 YspA SLOG family SDE12394_RS08190 PF03838 Recombination protein U SDE12394_RS08195 PF00912 Transglycosylase SDE12394_RS08195 PF00905 Penicillin binding protein transpeptidase domain SDE12394_RS08200 PF03051 Peptidase C1-like family SDE12394_RS08205 PF02540 NAD synthase SDE12394_RS08210 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SDE12394_RS08210 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SDE12394_RS08210 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SDE12394_RS08215 PF00324 Amino acid permease SDE12394_RS08220 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS08230 PF00005 ABC transporter SDE12394_RS08235 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS08245 PF00271 Helicase conserved C-terminal domain SDE12394_RS08245 PF00270 DEAD/DEAH box helicase SDE12394_RS08250 PF00953 Glycosyl transferase family 4 SDE12394_RS08250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SDE12394_RS08265 PF01795 MraW methylase family SDE12394_RS08270 PF00171 Aldehyde dehydrogenase family SDE12394_RS08275 PF00696 Amino acid kinase family SDE12394_RS08295 PF02780 Transketolase, C-terminal domain SDE12394_RS08295 PF00456 Transketolase, thiamine diphosphate binding domain SDE12394_RS08295 PF02779 Transketolase, pyrimidine binding domain SDE12394_RS08300 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDE12394_RS08310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS08315 PF00230 Major intrinsic protein SDE12394_RS08320 PF01266 FAD dependent oxidoreductase SDE12394_RS08320 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SDE12394_RS08325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDE12394_RS08325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDE12394_RS08330 PF03413 Peptidase propeptide and YPEB domain SDE12394_RS08335 PF05979 Bacterial protein of unknown function (DUF896) SDE12394_RS08340 PF02092 Glycyl-tRNA synthetase beta subunit SDE12394_RS08345 PF02091 Glycyl-tRNA synthetase alpha subunit SDE12394_RS08350 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SDE12394_RS08355 PF00248 Aldo/keto reductase family SDE12394_RS08360 PF01979 Amidohydrolase family SDE12394_RS08365 PF02690 Na+/Pi-cotransporter SDE12394_RS08375 PF02645 Uncharacterised protein, DegV family COG1307 SDE12394_RS08390 PF03458 UPF0126 domain SDE12394_RS08395 PF01791 DeoC/LacD family aldolase SDE12394_RS08400 PF00294 pfkB family carbohydrate kinase SDE12394_RS08405 PF02502 Ribose/Galactose Isomerase SDE12394_RS08410 PF02502 Ribose/Galactose Isomerase SDE12394_RS08425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDE12394_RS08430 PF08220 DeoR-like helix-turn-helix domain SDE12394_RS08430 PF00455 DeoR C terminal sensor domain SDE12394_RS08440 PF00403 Heavy-metal-associated domain SDE12394_RS08445 PF03965 Penicillinase repressor SDE12394_RS08450 PF07859 alpha/beta hydrolase fold SDE12394_RS08455 PF02033 Ribosome-binding factor A SDE12394_RS08460 PF04760 Translation initiation factor IF-2, N-terminal region SDE12394_RS08460 PF11987 Translation-initiation factor 2 SDE12394_RS08460 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS08465 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SDE12394_RS08470 PF04296 Protein of unknown function (DUF448) SDE12394_RS08475 PF13184 NusA-like KH domain SDE12394_RS08475 PF08529 NusA N-terminal domain SDE12394_RS08475 PF00575 S1 RNA binding domain SDE12394_RS08480 PF02576 RimP N-terminal domain SDE12394_RS08480 PF17384 RimP C-terminal SH3 domain SDE12394_RS08490 PF02390 Putative methyltransferase SDE12394_RS08500 PF05975 Bacterial ABC transporter protein EcsB SDE12394_RS08505 PF00005 ABC transporter SDE12394_RS08510 PF01230 HIT domain SDE12394_RS08525 PF13302 Acetyltransferase (GNAT) domain SDE12394_RS08530 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SDE12394_RS08535 PF00860 Permease family SDE12394_RS08545 PF03610 PTS system fructose IIA component SDE12394_RS08545 PF03830 PTS system sorbose subfamily IIB component SDE12394_RS08550 PF03609 PTS system sorbose-specific iic component SDE12394_RS08555 PF03613 PTS system mannose/fructose/sorbose family IID component SDE12394_RS08570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDE12394_RS08570 PF02403 Seryl-tRNA synthetase N-terminal domain SDE12394_RS08575 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SDE12394_RS08580 PF01039 Carboxyl transferase domain SDE12394_RS08580 PF17848 Acetyl-coA carboxylase zinc finger domain SDE12394_RS08585 PF02785 Biotin carboxylase C-terminal domain SDE12394_RS08585 PF00289 Biotin carboxylase, N-terminal domain SDE12394_RS08585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDE12394_RS08590 PF07977 FabA-like domain SDE12394_RS08595 PF00364 Biotin-requiring enzyme SDE12394_RS08600 PF02801 Beta-ketoacyl synthase, C-terminal domain SDE12394_RS08600 PF00109 Beta-ketoacyl synthase, N-terminal domain SDE12394_RS08610 PF00698 Acyl transferase domain SDE12394_RS08615 PF03060 Nitronate monooxygenase SDE12394_RS08620 PF00550 Phosphopantetheine attachment site SDE12394_RS08625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SDE12394_RS08625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SDE12394_RS08635 PF00378 Enoyl-CoA hydratase/isomerase SDE12394_RS08640 PF01556 DnaJ C terminal domain SDE12394_RS08640 PF00226 DnaJ domain SDE12394_RS08640 PF00684 DnaJ central domain SDE12394_RS08650 PF00012 Hsp70 protein SDE12394_RS08655 PF01025 GrpE SDE12394_RS08660 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SDE12394_RS08660 PF01628 HrcA protein C terminal domain SDE12394_RS08670 PF02557 D-alanyl-D-alanine carboxypeptidase SDE12394_RS08675 PF00300 Histidine phosphatase superfamily (branch 1) SDE12394_RS08680 PF04226 Transglycosylase associated protein SDE12394_RS08685 PF00892 EamA-like transporter family SDE12394_RS08690 PF02934 GatB/GatE catalytic domain SDE12394_RS08690 PF02637 GatB domain SDE12394_RS08695 PF01425 Amidase SDE12394_RS08700 PF02686 Glu-tRNAGln amidotransferase C subunit SDE12394_RS08705 PF02896 PEP-utilising enzyme, TIM barrel domain SDE12394_RS08705 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SDE12394_RS08705 PF00391 PEP-utilising enzyme, mobile domain SDE12394_RS08710 PF03618 Kinase/pyrophosphorylase SDE12394_RS08715 PF08279 HTH domain SDE12394_RS08715 PF00571 CBS domain SDE12394_RS08725 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS08725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS08735 PF02583 Metal-sensitive transcriptional repressor SDE12394_RS08740 PF00857 Isochorismatase family SDE12394_RS08745 PF08222 CodY helix-turn-helix domain SDE12394_RS08745 PF06018 CodY GAF-like domain SDE12394_RS08750 PF00155 Aminotransferase class I and II SDE12394_RS08765 PF17763 Glutaminase/Asparaginase C-terminal domain SDE12394_RS08765 PF00710 Asparaginase, N-terminal SDE12394_RS08775 PF00270 DEAD/DEAH box helicase SDE12394_RS08775 PF00271 Helicase conserved C-terminal domain SDE12394_RS08775 PF17191 RecG wedge domain SDE12394_RS08780 PF00005 ABC transporter SDE12394_RS08795 PF00664 ABC transporter transmembrane region SDE12394_RS08795 PF00005 ABC transporter SDE12394_RS08805 PF00005 ABC transporter SDE12394_RS08810 PF01032 FecCD transport family SDE12394_RS08815 PF01497 Periplasmic binding protein SDE12394_RS08830 PF01476 LysM domain SDE12394_RS08830 PF05257 CHAP domain SDE12394_RS08835 PF00842 Alanine racemase, C-terminal domain SDE12394_RS08835 PF01168 Alanine racemase, N-terminal domain SDE12394_RS08840 PF01648 4'-phosphopantetheinyl transferase superfamily SDE12394_RS08845 PF07517 SecA DEAD-like domain SDE12394_RS08845 PF07516 SecA Wing and Scaffold domain SDE12394_RS08845 PF01043 SecA preprotein cross-linking domain SDE12394_RS08845 PF02810 SEC-C motif SDE12394_RS08850 PF01238 Phosphomannose isomerase type I SDE12394_RS08855 PF00480 ROK family SDE12394_RS08860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDE12394_RS08860 PF00367 phosphotransferase system, EIIB SDE12394_RS08860 PF02378 Phosphotransferase system, EIIC SDE12394_RS08870 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS08875 PF01029 NusB family SDE12394_RS08880 PF03780 Asp23 family, cell envelope-related function SDE12394_RS08885 PF01132 Elongation factor P (EF-P) OB domain SDE12394_RS08885 PF09285 Elongation factor P, C-terminal SDE12394_RS08885 PF08207 Elongation factor P (EF-P) KOW-like domain SDE12394_RS08890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDE12394_RS08895 PF01321 Creatinase/Prolidase N-terminal domain SDE12394_RS08895 PF00557 Metallopeptidase family M24 SDE12394_RS08900 PF00005 ABC transporter SDE12394_RS08900 PF17755 UvrA DNA-binding domain SDE12394_RS08900 PF17760 UvrA interaction domain SDE12394_RS08915 PF01084 Ribosomal protein S18 SDE12394_RS08920 PF00436 Single-strand binding protein family SDE12394_RS08925 PF01250 Ribosomal protein S6 SDE12394_RS08935 PF14815 NUDIX domain SDE12394_RS08935 PF00730 HhH-GPD superfamily base excision DNA repair protein SDE12394_RS08940 PF00085 Thioredoxin SDE12394_RS08945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDE12394_RS08945 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS08950 PF01713 Smr domain SDE12394_RS08950 PF00488 MutS domain V SDE12394_RS08965 PF01351 Ribonuclease HII SDE12394_RS08965 PF11858 Domain of unknown function (DUF3378) SDE12394_RS08970 PF10502 Signal peptidase, peptidase S26 SDE12394_RS08975 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SDE12394_RS08975 PF14490 Helix-hairpin-helix containing domain SDE12394_RS08975 PF13538 UvrD-like helicase C-terminal domain SDE12394_RS08985 PF11798 IMS family HHH motif SDE12394_RS08985 PF00817 impB/mucB/samB family SDE12394_RS08985 PF11799 impB/mucB/samB family C-terminal domain SDE12394_RS08990 PF01228 Glycine radical SDE12394_RS08990 PF02901 Pyruvate formate lyase-like SDE12394_RS08995 PF13673 Acetyltransferase (GNAT) domain SDE12394_RS09000 PF16657 Maltogenic Amylase, C-terminal domain SDE12394_RS09000 PF02903 Alpha amylase, N-terminal ig-like domain SDE12394_RS09000 PF00128 Alpha amylase, catalytic domain SDE12394_RS09005 PF01547 Bacterial extracellular solute-binding protein SDE12394_RS09015 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09020 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09025 PF00356 Bacterial regulatory proteins, lacI family SDE12394_RS09025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDE12394_RS09030 PF00144 Beta-lactamase SDE12394_RS09045 PF00230 Major intrinsic protein SDE12394_RS09050 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SDE12394_RS09050 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SDE12394_RS09050 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SDE12394_RS09075 PF07739 TipAS antibiotic-recognition domain SDE12394_RS09075 PF13411 MerR HTH family regulatory protein SDE12394_RS09080 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDE12394_RS09080 PF11490 DNA polymerase III polC-type N-terminus II SDE12394_RS09080 PF01336 OB-fold nucleic acid binding domain SDE12394_RS09080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDE12394_RS09080 PF02811 PHP domain SDE12394_RS09080 PF14579 Helix-hairpin-helix motif SDE12394_RS09080 PF00929 Exonuclease SDE12394_RS09085 PF04394 Protein of unknown function, DUF536 SDE12394_RS09085 PF08279 HTH domain SDE12394_RS09110 PF00253 Ribosomal protein S14p/S29e SDE12394_RS09115 PF00814 Glycoprotease family SDE12394_RS09125 PF00814 Glycoprotease family SDE12394_RS09130 PF07288 Protein of unknown function (DUF1447) SDE12394_RS09135 PF00753 Metallo-beta-lactamase superfamily SDE12394_RS09135 PF17770 Ribonuclease J C-terminal domain SDE12394_RS09135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SDE12394_RS09145 PF00005 ABC transporter SDE12394_RS09145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDE12394_RS09150 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09150 PF12911 N-terminal TM domain of oligopeptide transport permease C SDE12394_RS09155 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDE12394_RS09165 PF03951 Glutamine synthetase, beta-Grasp domain SDE12394_RS09165 PF00120 Glutamine synthetase, catalytic domain SDE12394_RS09170 PF13411 MerR HTH family regulatory protein SDE12394_RS09185 PF00162 Phosphoglycerate kinase SDE12394_RS09190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SDE12394_RS09195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SDE12394_RS09195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SDE12394_RS09200 PF00009 Elongation factor Tu GTP binding domain SDE12394_RS09200 PF00679 Elongation factor G C-terminus SDE12394_RS09200 PF03144 Elongation factor Tu domain 2 SDE12394_RS09200 PF14492 Elongation Factor G, domain II SDE12394_RS09200 PF03764 Elongation factor G, domain IV SDE12394_RS09205 PF00177 Ribosomal protein S7p/S5e SDE12394_RS09210 PF00164 Ribosomal protein S12/S23 SDE12394_RS09220 PF09182 Bacterial purine repressor, N-terminal SDE12394_RS09220 PF00156 Phosphoribosyl transferase domain SDE12394_RS09225 PF01966 HD domain SDE12394_RS09235 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SDE12394_RS09235 PF04263 Thiamin pyrophosphokinase, catalytic domain SDE12394_RS09240 PF00834 Ribulose-phosphate 3 epimerase family SDE12394_RS09245 PF03193 RsgA GTPase SDE12394_RS09245 PF16745 RsgA N-terminal domain SDE12394_RS09250 PF00398 Ribosomal RNA adenine dimethylase SDE12394_RS09255 PF13331 Domain of unknown function (DUF4093) SDE12394_RS09260 PF01026 TatD related DNase SDE12394_RS09265 PF00857 Isochorismatase family SDE12394_RS09275 PF00480 ROK family SDE12394_RS09280 PF00701 Dihydrodipicolinate synthetase family SDE12394_RS09295 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09300 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09310 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SDE12394_RS09315 PF00468 Ribosomal protein L34 SDE12394_RS09320 PF01424 R3H domain SDE12394_RS09320 PF14804 Jag N-terminus SDE12394_RS09325 PF02096 60Kd inner membrane protein SDE12394_RS09330 PF00825 Ribonuclease P SDE12394_RS09350 PF00749 tRNA synthetases class I (E and Q), catalytic domain SDE12394_RS09370 PF01987 Mitochondrial biogenesis AIM24 SDE12394_RS09375 PF00484 Carbonic anhydrase SDE12394_RS09380 PF18073 Rubredoxin metal binding domain SDE12394_RS09385 PF00692 dUTPase SDE12394_RS09390 PF02677 Epoxyqueuosine reductase QueH SDE12394_RS09395 PF00664 ABC transporter transmembrane region SDE12394_RS09395 PF00005 ABC transporter SDE12394_RS09400 PF00005 ABC transporter SDE12394_RS09400 PF00664 ABC transporter transmembrane region SDE12394_RS09410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SDE12394_RS09410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SDE12394_RS09415 PF00483 Nucleotidyl transferase SDE12394_RS09430 PF01812 5-formyltetrahydrofolate cyclo-ligase family SDE12394_RS09440 PF13936 Helix-turn-helix domain SDE12394_RS09465 PF08534 Redoxin SDE12394_RS09475 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SDE12394_RS09475 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SDE12394_RS09475 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SDE12394_RS09475 PF12838 4Fe-4S dicluster domain SDE12394_RS09475 PF10371 Domain of unknown function SDE12394_RS09475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDE12394_RS09480 PF00936 BMC domain SDE12394_RS09485 PF00936 BMC domain SDE12394_RS09490 PF06130 Phosphate propanoyltransferase SDE12394_RS09495 PF00465 Iron-containing alcohol dehydrogenase SDE12394_RS09495 PF00171 Aldehyde dehydrogenase family SDE12394_RS09500 PF00936 BMC domain SDE12394_RS09505 PF06249 Ethanolamine utilisation protein EutQ SDE12394_RS09510 PF03319 Ethanolamine utilisation protein EutN/carboxysome SDE12394_RS09525 PF00465 Iron-containing alcohol dehydrogenase SDE12394_RS09535 PF00936 BMC domain SDE12394_RS09540 PF04055 Radical SAM superfamily SDE12394_RS09540 PF13187 4Fe-4S dicluster domain SDE12394_RS09545 PF01228 Glycine radical SDE12394_RS09545 PF02901 Pyruvate formate lyase-like SDE12394_RS09550 PF00465 Iron-containing alcohol dehydrogenase SDE12394_RS09550 PF00171 Aldehyde dehydrogenase family SDE12394_RS09555 PF00936 BMC domain SDE12394_RS09560 PF00936 BMC domain SDE12394_RS09575 PF00936 BMC domain SDE12394_RS09580 PF13411 MerR HTH family regulatory protein SDE12394_RS09580 PF06445 GyrI-like small molecule binding domain SDE12394_RS09595 PF14437 MafB19-like deaminase SDE12394_RS09600 PF12706 Beta-lactamase superfamily domain SDE12394_RS09605 PF02632 BioY family SDE12394_RS09610 PF01702 Queuine tRNA-ribosyltransferase SDE12394_RS09620 PF01475 Ferric uptake regulator family SDE12394_RS09625 PF13380 CoA binding domain SDE12394_RS09630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SDE12394_RS09630 PF01367 5'-3' exonuclease, C-terminal SAM fold SDE12394_RS09630 PF00476 DNA polymerase family A SDE12394_RS09635 PF00528 Binding-protein-dependent transport system inner membrane component SDE12394_RS09640 PF00571 CBS domain SDE12394_RS09640 PF00005 ABC transporter SDE12394_RS09645 PF00781 Diacylglycerol kinase catalytic domain SDE12394_RS09665 PF00596 Class II Aldolase and Adducin N-terminal domain SDE12394_RS09670 PF01261 Xylose isomerase-like TIM barrel SDE12394_RS09675 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDE12394_RS09680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDE12394_RS09685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDE12394_RS09690 PF03611 PTS system sugar-specific permease component SDE12394_RS09695 PF08264 Anticodon-binding domain of tRNA SDE12394_RS09695 PF09334 tRNA synthetases class I (M) SDE12394_RS09695 PF13603 Leucyl-tRNA synthetase, Domain 2 SDE12394_RS09695 PF00133 tRNA synthetases class I (I, L, M and V) SDE12394_RS09705 PF13936 Helix-turn-helix domain SDE12394_RS09725 PF00005 ABC transporter SDE12394_RS09725 PF00664 ABC transporter transmembrane region SDE12394_RS09730 PF00899 ThiF family SDE12394_RS09750 PF01289 Thiol-activated cytolysin SDE12394_RS09750 PF17440 Thiol-activated cytolysin beta sandwich domain SDE12394_RS09765 PF00467 KOW motif SDE12394_RS09765 PF02357 Transcription termination factor nusG SDE12394_RS09775 PF00912 Transglycosylase SDE12394_RS09775 PF00905 Penicillin binding protein transpeptidase domain SDE12394_RS09790 PF00849 RNA pseudouridylate synthase SDE12394_RS09790 PF01479 S4 domain SDE12394_RS09800 PF03577 Peptidase family C69 SDE12394_RS09805 PF00293 NUDIX domain SDE12394_RS09810 PF00118 TCP-1/cpn60 chaperonin family SDE12394_RS09815 PF00166 Chaperonin 10 Kd subunit SDE12394_RS09820 PF02861 Clp amino terminal domain, pathogenicity island component SDE12394_RS09820 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS09820 PF17871 AAA lid domain SDE12394_RS09820 PF07724 AAA domain (Cdc48 subfamily) SDE12394_RS09820 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS09825 PF17727 CtsR C-terminal dimerization domain SDE12394_RS09825 PF05848 CtsR N-terminal HTH domain SDE12394_RS09830 PF00313 'Cold-shock' DNA-binding domain SDE12394_RS09850 PF00578 AhpC/TSA family SDE12394_RS09855 PF13192 Thioredoxin domain SDE12394_RS09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDE12394_RS09860 PF01979 Amidohydrolase family SDE12394_RS09865 PF01175 Urocanase Rossmann-like domain SDE12394_RS09865 PF17392 Urocanase C-terminal domain SDE12394_RS09865 PF17391 Urocanase N-terminal domain SDE12394_RS09870 PF02971 Formiminotransferase domain SDE12394_RS09870 PF07837 Formiminotransferase domain, N-terminal subdomain SDE12394_RS09875 PF04961 Formiminotransferase-cyclodeaminase SDE12394_RS09880 PF01268 Formate--tetrahydrofolate ligase SDE12394_RS09890 PF13520 Amino acid permease SDE12394_RS09895 PF00221 Aromatic amino acid lyase SDE12394_RS09900 PF00491 Arginase family SDE12394_RS09910 PF00318 Ribosomal protein S2 SDE12394_RS09915 PF00889 Elongation factor TS SDE12394_RS09920 PF01431 Peptidase family M13 SDE12394_RS09920 PF05649 Peptidase family M13 SDE12394_RS09925 PF16657 Maltogenic Amylase, C-terminal domain SDE12394_RS09925 PF00128 Alpha amylase, catalytic domain SDE12394_RS09930 PF00367 phosphotransferase system, EIIB SDE12394_RS09930 PF02378 Phosphotransferase system, EIIC SDE12394_RS09935 PF00392 Bacterial regulatory proteins, gntR family SDE12394_RS09935 PF07702 UTRA domain SDE12394_RS09940 PF01638 HxlR-like helix-turn-helix SDE12394_RS09945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDE12394_RS09950 PF03883 Peroxide stress protein YaaA SDE12394_RS09965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDE12394_RS09970 PF13597 Anaerobic ribonucleoside-triphosphate reductase SDE12394_RS09970 PF03477 ATP cone domain SDE12394_RS09980 PF06949 Protein of unknown function (DUF1292) SDE12394_RS09985 PF03652 Holliday junction resolvase SDE12394_RS09990 PF06135 IreB regulatory phosphoprotein SDE12394_RS09995 PF03960 ArsC family SDE12394_RS10000 PF00154 recA bacterial DNA recombination protein SDE12394_RS10005 PF02464 Competence-damaged protein SDE12394_RS10005 PF00994 Probable molybdopterin binding domain SDE12394_RS10005 PF18146 Damage-inducible protein CinA KH domain SDE12394_RS10015 PF13673 Acetyltransferase (GNAT) domain SDE12394_RS10015 PF03352 Methyladenine glycosylase SDE12394_RS10015 PF00117 Glutamine amidotransferase class-I SDE12394_RS10015 PF00958 GMP synthase C terminal domain SDE12394_RS10015 PF13302 Acetyltransferase (GNAT) domain SDE12394_RS10020 PF01330 RuvA N terminal domain SDE12394_RS10020 PF07499 RuvA, C-terminal domain SDE12394_RS10025 PF07690 Major Facilitator Superfamily SDE12394_RS10030 PF01119 DNA mismatch repair protein, C-terminal domain SDE12394_RS10030 PF08676 MutL C terminal dimerisation domain SDE12394_RS10035 PF01624 MutS domain I SDE12394_RS10035 PF00488 MutS domain V SDE12394_RS10035 PF05188 MutS domain II SDE12394_RS10035 PF05190 MutS family domain IV SDE12394_RS10035 PF05192 MutS domain III SDE12394_RS10045 PF02863 Arginine repressor, C-terminal domain SDE12394_RS10045 PF01316 Arginine repressor, DNA binding domain SDE12394_RS10050 PF03485 Arginyl tRNA synthetase N terminal domain SDE12394_RS10050 PF00750 tRNA synthetases class I (R) SDE12394_RS10050 PF05746 DALR anticodon binding domain SDE12394_RS10055 PF12848 ABC transporter SDE12394_RS10055 PF00005 ABC transporter SDE12394_RS10060 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDE12394_RS10060 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDE12394_RS10065 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDE12394_RS10065 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDE12394_RS10075 PF00152 tRNA synthetases class II (D, K and N) SDE12394_RS10075 PF01336 OB-fold nucleic acid binding domain SDE12394_RS10075 PF02938 GAD domain SDE12394_RS10080 PF03129 Anticodon binding domain SDE12394_RS10080 PF13393 Histidyl-tRNA synthetase SDE12394_RS10085 PF01783 Ribosomal L32p protein family SDE12394_RS10090 PF00471 Ribosomal protein L33 SDE12394_RS10100 PF01022 Bacterial regulatory protein, arsR family SDE12394_RS10310 PF14659 Phage integrase, N-terminal SAM-like domain SDE12394_RS10310 PF00589 Phage integrase family SDE12394_RS10315 PF01479 S4 domain SDE12394_RS10315 PF00163 Ribosomal protein S4/S9 N-terminal domain SDE12394_RS10320 PF00145 C-5 cytosine-specific DNA methylase SDE12394_RS10320 PF01381 Helix-turn-helix SDE12394_RS10330 PF00772 DnaB-like helicase N terminal domain SDE12394_RS10330 PF03796 DnaB-like helicase C terminal domain SDE12394_RS10335 PF01281 Ribosomal protein L9, N-terminal domain SDE12394_RS10335 PF03948 Ribosomal protein L9, C-terminal domain SDE12394_RS10340 PF01368 DHH family SDE12394_RS10340 PF02272 DHHA1 domain SDE12394_RS10345 PF01134 Glucose inhibited division protein A SDE12394_RS10345 PF13932 GidA associated domain SDE12394_RS10355 PF01914 MarC family integral membrane protein SDE12394_RS10365 PF01842 ACT domain SDE12394_RS10365 PF03315 Serine dehydratase beta chain SDE12394_RS10370 PF03313 Serine dehydratase alpha chain SDE12394_RS10375 PF13419 Haloacid dehalogenase-like hydrolase SDE12394_RS10385 PF02361 Cobalt transport protein SDE12394_RS10390 PF00005 ABC transporter SDE12394_RS10395 PF00005 ABC transporter SDE12394_RS10400 PF01066 CDP-alcohol phosphatidyltransferase SDE12394_RS10410 PF05193 Peptidase M16 inactive domain SDE12394_RS10410 PF00675 Insulinase (Peptidase family M16) SDE12394_RS10425 PF02463 RecF/RecN/SMC N terminal domain SDE12394_RS10430 PF06800 Sugar transport protein SDE12394_RS10435 PF00478 IMP dehydrogenase / GMP reductase domain SDE12394_RS10435 PF00571 CBS domain SDE12394_RS10440 PF00579 tRNA synthetases class I (W and Y) SDE12394_RS10445 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDE12394_RS10445 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDE12394_RS10450 PF00005 ABC transporter SDE12394_RS10450 PF12848 ABC transporter SDE12394_RS10470 PF13936 Helix-turn-helix domain SDE12394_RS10480 PF02590 Predicted SPOUT methyltransferase SDE12394_RS10485 PF13180 PDZ domain SDE12394_RS10490 PF02195 ParB-like nuclease domain SDE12394_RS10490 PF17762 HTH domain found in ParB protein SDE12394_RS10515 PF17871 AAA lid domain SDE12394_RS10515 PF00004 ATPase family associated with various cellular activities (AAA) SDE12394_RS10515 PF10431 C-terminal, D2-small domain, of ClpB protein SDE12394_RS10515 PF07724 AAA domain (Cdc48 subfamily)