locus-tag class description SDEG_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SDEG_RS00005 PF00308 Bacterial dnaA protein SDEG_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SDEG_RS00010 PF02767 DNA polymerase III beta subunit, central domain SDEG_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SDEG_RS00030 PF01926 50S ribosome-binding GTPase SDEG_RS00030 PF06071 Protein of unknown function (DUF933) SDEG_RS00035 PF01195 Peptidyl-tRNA hydrolase SDEG_RS00040 PF02559 CarD-like/TRCF domain SDEG_RS00040 PF03461 TRCF domain SDEG_RS00040 PF17757 UvrB interaction domain SDEG_RS00040 PF00271 Helicase conserved C-terminal domain SDEG_RS00040 PF00270 DEAD/DEAH box helicase SDEG_RS00045 PF14667 Polysaccharide biosynthesis C-terminal domain SDEG_RS00045 PF01943 Polysaccharide biosynthesis protein SDEG_RS00050 PF01479 S4 domain SDEG_RS00065 PF01171 PP-loop family SDEG_RS00070 PF00156 Phosphoribosyl transferase domain SDEG_RS00075 PF06480 FtsH Extracellular SDEG_RS00075 PF17862 AAA+ lid domain SDEG_RS00075 PF00004 ATPase family associated with various cellular activities (AAA) SDEG_RS00075 PF01434 Peptidase family M41 SDEG_RS00080 PF13520 Amino acid permease SDEG_RS00085 PF13936 Helix-turn-helix domain SDEG_RS00195 PF01476 LysM domain SDEG_RS00195 PF05257 CHAP domain SDEG_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SDEG_RS00200 PF14572 Phosphoribosyl synthetase-associated domain SDEG_RS00205 PF02565 Recombination protein O C terminal SDEG_RS00205 PF11967 Recombination protein O N terminal SDEG_RS00210 PF02504 Fatty acid synthesis protein SDEG_RS00215 PF00550 Phosphopantetheine attachment site SDEG_RS00220 PF01259 SAICAR synthetase SDEG_RS00225 PF02769 AIR synthase related protein, C-terminal domain SDEG_RS00225 PF00586 AIR synthase related protein, N-terminal domain SDEG_RS00225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SDEG_RS00230 PF13537 Glutamine amidotransferase domain SDEG_RS00230 PF00156 Phosphoribosyl transferase domain SDEG_RS00235 PF02769 AIR synthase related protein, C-terminal domain SDEG_RS00235 PF00586 AIR synthase related protein, N-terminal domain SDEG_RS00240 PF00551 Formyl transferase SDEG_RS00245 PF04892 VanZ like family SDEG_RS00250 PF01808 AICARFT/IMPCHase bienzyme SDEG_RS00250 PF02142 MGS-like domain SDEG_RS00255 PF05257 CHAP domain SDEG_RS00260 PF02843 Phosphoribosylglycinamide synthetase, C domain SDEG_RS00260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SDEG_RS00260 PF02844 Phosphoribosylglycinamide synthetase, N domain SDEG_RS00265 PF00731 AIR carboxylase SDEG_RS00270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDEG_RS00270 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SDEG_RS00270 PF02222 ATP-grasp domain SDEG_RS00285 PF00206 Lyase SDEG_RS00285 PF10397 Adenylosuccinate lyase C-terminus SDEG_RS00295 PF17864 RuvB AAA lid domain SDEG_RS00295 PF05491 RuvB C-terminal winged helix domain SDEG_RS00295 PF05496 Holliday junction DNA helicase RuvB P-loop domain SDEG_RS00300 PF01451 Low molecular weight phosphotyrosine protein phosphatase SDEG_RS00310 PF01757 Acyltransferase family SDEG_RS00315 PF00171 Aldehyde dehydrogenase family SDEG_RS00315 PF00465 Iron-containing alcohol dehydrogenase SDEG_RS00320 PF00107 Zinc-binding dehydrogenase SDEG_RS00320 PF08240 Alcohol dehydrogenase GroES-like domain SDEG_RS00325 PF00291 Pyridoxal-phosphate dependent enzyme SDEG_RS00335 PF13936 Helix-turn-helix domain SDEG_RS00340 PF00338 Ribosomal protein S10p/S20e SDEG_RS00345 PF00297 Ribosomal protein L3 SDEG_RS00350 PF00573 Ribosomal protein L4/L1 family SDEG_RS00355 PF00276 Ribosomal protein L23 SDEG_RS00360 PF03947 Ribosomal Proteins L2, C-terminal domain SDEG_RS00360 PF00181 Ribosomal Proteins L2, RNA binding domain SDEG_RS00365 PF00203 Ribosomal protein S19 SDEG_RS00370 PF00237 Ribosomal protein L22p/L17e SDEG_RS00375 PF07650 KH domain SDEG_RS00375 PF00189 Ribosomal protein S3, C-terminal domain SDEG_RS00380 PF00252 Ribosomal protein L16p/L10e SDEG_RS00385 PF00831 Ribosomal L29 protein SDEG_RS00390 PF00366 Ribosomal protein S17 SDEG_RS00395 PF00238 Ribosomal protein L14p/L23e SDEG_RS00400 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SDEG_RS00400 PF00467 KOW motif SDEG_RS00405 PF00673 ribosomal L5P family C-terminus SDEG_RS00405 PF00281 Ribosomal protein L5 SDEG_RS00410 PF00253 Ribosomal protein S14p/S29e SDEG_RS00415 PF00410 Ribosomal protein S8 SDEG_RS00420 PF00347 Ribosomal protein L6 SDEG_RS00425 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SDEG_RS00430 PF03719 Ribosomal protein S5, C-terminal domain SDEG_RS00430 PF00333 Ribosomal protein S5, N-terminal domain SDEG_RS00435 PF00327 Ribosomal protein L30p/L7e SDEG_RS00440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SDEG_RS00445 PF00344 SecY translocase SDEG_RS00455 PF01176 Translation initiation factor 1A / IF-1 SDEG_RS00460 PF00416 Ribosomal protein S13/S18 SDEG_RS00465 PF00411 Ribosomal protein S11 SDEG_RS00470 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SDEG_RS00470 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SDEG_RS00470 PF01000 RNA polymerase Rpb3/RpoA insert domain SDEG_RS00475 PF01196 Ribosomal protein L17 SDEG_RS00480 PF13936 Helix-turn-helix domain SDEG_RS00485 PF13936 Helix-turn-helix domain SDEG_RS00570 PF00293 NUDIX domain SDEG_RS00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS00585 PF01654 Cytochrome bd terminal oxidase subunit I SDEG_RS00590 PF02322 Cytochrome bd terminal oxidase subunit II SDEG_RS00595 PF00664 ABC transporter transmembrane region SDEG_RS00595 PF00005 ABC transporter SDEG_RS00600 PF00005 ABC transporter SDEG_RS00600 PF00664 ABC transporter transmembrane region SDEG_RS00605 PF00348 Polyprenyl synthetase SDEG_RS00610 PF00288 GHMP kinases N terminal domain SDEG_RS00610 PF08544 GHMP kinases C terminal SDEG_RS00615 PF01047 MarR family SDEG_RS00620 PF00005 ABC transporter SDEG_RS00625 PF00950 ABC 3 transport family SDEG_RS00630 PF00579 tRNA synthetases class I (W and Y) SDEG_RS00630 PF01479 S4 domain SDEG_RS00635 PF00905 Penicillin binding protein transpeptidase domain SDEG_RS00635 PF00912 Transglycosylase SDEG_RS00640 PF04561 RNA polymerase Rpb2, domain 2 SDEG_RS00640 PF04560 RNA polymerase Rpb2, domain 7 SDEG_RS00640 PF00562 RNA polymerase Rpb2, domain 6 SDEG_RS00640 PF10385 RNA polymerase beta subunit external 1 domain SDEG_RS00640 PF04563 RNA polymerase beta subunit SDEG_RS00640 PF04565 RNA polymerase Rpb2, domain 3 SDEG_RS00645 PF00623 RNA polymerase Rpb1, domain 2 SDEG_RS00645 PF04997 RNA polymerase Rpb1, domain 1 SDEG_RS00645 PF04983 RNA polymerase Rpb1, domain 3 SDEG_RS00645 PF05000 RNA polymerase Rpb1, domain 4 SDEG_RS00645 PF04998 RNA polymerase Rpb1, domain 5 SDEG_RS00655 PF00437 Type II/IV secretion system protein SDEG_RS00660 PF00482 Type II secretion system (T2SS), protein F SDEG_RS00665 PF07963 Prokaryotic N-terminal methylation motif SDEG_RS00695 PF00871 Acetokinase family SDEG_RS00705 PF02517 CPBP intramembrane metalloprotease SDEG_RS00715 PF03807 NADP oxidoreductase coenzyme F420-dependent SDEG_RS00715 PF14748 Pyrroline-5-carboxylate reductase dimerisation SDEG_RS00720 PF05343 M42 glutamyl aminopeptidase SDEG_RS00730 PF00085 Thioredoxin SDEG_RS00735 PF14794 Domain of unknown function (DUF4479) SDEG_RS00735 PF01588 Putative tRNA binding domain SDEG_RS00740 PF00436 Single-strand binding protein family SDEG_RS00745 PF01712 Deoxynucleoside kinase SDEG_RS00750 PF01207 Dihydrouridine synthase (Dus) SDEG_RS00755 PF01430 Hsp33 protein SDEG_RS00795 PF01042 Endoribonuclease L-PSP SDEG_RS00815 PF00709 Adenylosuccinate synthetase SDEG_RS00820 PF02608 ABC transporter substrate-binding protein PnrA-like SDEG_RS00825 PF04055 Radical SAM superfamily SDEG_RS00830 PF08220 DeoR-like helix-turn-helix domain SDEG_RS00830 PF00455 DeoR C terminal sensor domain SDEG_RS00835 PF04198 Putative sugar-binding domain SDEG_RS00840 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SDEG_RS00845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS00850 PF02378 Phosphotransferase system, EIIC SDEG_RS00855 PF02901 Pyruvate formate lyase-like SDEG_RS00855 PF01228 Glycine radical SDEG_RS00860 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDEG_RS00865 PF00465 Iron-containing alcohol dehydrogenase SDEG_RS00875 PF04608 Phosphatidylglycerophosphatase A SDEG_RS00900 PF13443 Cro/C1-type HTH DNA-binding domain SDEG_RS00915 PF12848 ABC transporter SDEG_RS00915 PF16326 ABC transporter C-terminal domain SDEG_RS00915 PF00005 ABC transporter SDEG_RS00930 PF02545 Maf-like protein SDEG_RS00960 PF13936 Helix-turn-helix domain SDEG_RS00970 PF00005 ABC transporter SDEG_RS00970 PF00664 ABC transporter transmembrane region SDEG_RS00980 PF04439 Streptomycin adenylyltransferase SDEG_RS01040 PF00005 ABC transporter SDEG_RS01050 PF13683 Integrase core domain SDEG_RS01050 PF01610 Transposase SDEG_RS01060 PF12002 MgsA AAA+ ATPase C terminal SDEG_RS01060 PF05496 Holliday junction DNA helicase RuvB P-loop domain SDEG_RS01060 PF16193 AAA C-terminal domain SDEG_RS01065 PF00117 Glutamine amidotransferase class-I SDEG_RS01070 PF00425 chorismate binding enzyme SDEG_RS01070 PF04715 Anthranilate synthase component I, N terminal region SDEG_RS01085 PF04452 RNA methyltransferase SDEG_RS01090 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS01090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDEG_RS01095 PF02378 Phosphotransferase system, EIIC SDEG_RS01095 PF00367 phosphotransferase system, EIIB SDEG_RS01095 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDEG_RS01100 PF03372 Endonuclease/Exonuclease/phosphatase family SDEG_RS01110 PF05343 M42 glutamyl aminopeptidase SDEG_RS01120 PF01156 Inosine-uridine preferring nucleoside hydrolase SDEG_RS01125 PF07972 NrdI Flavodoxin like SDEG_RS01135 PF00746 LPXTG cell wall anchor motif SDEG_RS01135 PF04650 YSIRK type signal peptide SDEG_RS01135 PF00746 LPXTG cell wall anchor motif SDEG_RS01135 PF04650 YSIRK type signal peptide SDEG_RS01140 PF02824 TGS domain SDEG_RS01140 PF13291 ACT domain SDEG_RS01140 PF04607 Region found in RelA / SpoT proteins SDEG_RS01145 PF02580 D-Tyr-tRNA(Tyr) deacylase SDEG_RS01150 PF02821 Staphylokinase/Streptokinase family SDEG_RS01155 PF13556 PucR C-terminal helix-turn-helix domain SDEG_RS01160 PF03459 TOBE domain SDEG_RS01160 PF17912 MalK OB fold domain SDEG_RS01160 PF00005 ABC transporter SDEG_RS01165 PF00128 Alpha amylase, catalytic domain SDEG_RS01170 PF17999 Pullulanase N1-terminal domain SDEG_RS01170 PF00128 Alpha amylase, catalytic domain SDEG_RS01170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDEG_RS01185 PF02699 Preprotein translocase subunit SDEG_RS01190 PF01255 Putative undecaprenyl diphosphate synthase SDEG_RS01205 PF04073 Aminoacyl-tRNA editing domain SDEG_RS01205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDEG_RS01205 PF03129 Anticodon binding domain SDEG_RS01215 PF02811 PHP domain SDEG_RS01215 PF14579 Helix-hairpin-helix motif SDEG_RS01215 PF00929 Exonuclease SDEG_RS01215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDEG_RS01215 PF14480 DNA polymerase III polC-type N-terminus I SDEG_RS01215 PF11490 DNA polymerase III polC-type N-terminus II SDEG_RS01215 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDEG_RS01220 PF01047 MarR family SDEG_RS01225 PF03358 NADPH-dependent FMN reductase SDEG_RS01230 PF01327 Polypeptide deformylase SDEG_RS01245 PF00312 Ribosomal protein S15 SDEG_RS01250 PF08279 HTH domain SDEG_RS01250 PF00874 PRD domain SDEG_RS01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS01250 PF05043 Mga helix-turn-helix domain SDEG_RS01250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS01255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS01260 PF03611 PTS system sugar-specific permease component SDEG_RS01265 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDEG_RS01270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SDEG_RS01270 PF01138 3' exoribonuclease family, domain 1 SDEG_RS01270 PF03725 3' exoribonuclease family, domain 2 SDEG_RS01270 PF00575 S1 RNA binding domain SDEG_RS01270 PF00013 KH domain SDEG_RS01280 PF06426 Serine acetyltransferase, N-terminal SDEG_RS01280 PF00132 Bacterial transferase hexapeptide (six repeats) SDEG_RS01290 PF09190 DALR domain SDEG_RS01290 PF01406 tRNA synthetases class I (C) catalytic domain SDEG_RS01295 PF00636 Ribonuclease III domain SDEG_RS01315 PF00588 SpoU rRNA Methylase family SDEG_RS01315 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDEG_RS01325 PF02645 Uncharacterised protein, DegV family COG1307 SDEG_RS01335 PF01381 Helix-turn-helix SDEG_RS01345 PF00572 Ribosomal protein L13 SDEG_RS01350 PF00380 Ribosomal protein S9/S16 SDEG_RS01355 PF00589 Phage integrase family SDEG_RS01355 PF02899 Phage integrase, N-terminal SAM-like domain SDEG_RS01390 PF02486 Replication initiation factor SDEG_RS01400 PF01076 Plasmid recombination enzyme SDEG_RS01435 PF05147 Lanthionine synthetase C-like protein SDEG_RS01450 PF00145 C-5 cytosine-specific DNA methylase SDEG_RS01455 PF02976 DNA mismatch repair enzyme MutH SDEG_RS01480 PF02378 Phosphotransferase system, EIIC SDEG_RS01480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS01480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS01490 PF03611 PTS system sugar-specific permease component SDEG_RS01495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS01500 PF01116 Fructose-bisphosphate aldolase class-II SDEG_RS01555 PF00696 Amino acid kinase family SDEG_RS01555 PF13840 ACT domain SDEG_RS01560 PF01416 tRNA pseudouridine synthase SDEG_RS01565 PF08543 Phosphomethylpyrimidine kinase SDEG_RS01570 PF07155 ECF-type riboflavin transporter, S component SDEG_RS01575 PF04260 Protein of unknown function (DUF436) SDEG_RS01580 PF00924 Mechanosensitive ion channel SDEG_RS01585 PF00128 Alpha amylase, catalytic domain SDEG_RS01585 PF16738 Starch-binding module 26 SDEG_RS01590 PF00128 Alpha amylase, catalytic domain SDEG_RS01590 PF16738 Starch-binding module 26 SDEG_RS01595 PF05697 Bacterial trigger factor protein (TF) SDEG_RS01595 PF05698 Bacterial trigger factor protein (TF) C-terminus SDEG_RS01595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDEG_RS01600 PF05066 HB1, ASXL, restriction endonuclease HTH domain SDEG_RS01605 PF00117 Glutamine amidotransferase class-I SDEG_RS01605 PF06418 CTP synthase N-terminus SDEG_RS01610 PF06580 Histidine kinase SDEG_RS01610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS01610 PF07694 5TMR of 5TMR-LYT SDEG_RS01615 PF00072 Response regulator receiver domain SDEG_RS01615 PF04397 LytTr DNA-binding domain SDEG_RS01620 PF03788 LrgA family SDEG_RS01625 PF04172 LrgB-like family SDEG_RS01640 PF01116 Fructose-bisphosphate aldolase class-II SDEG_RS01650 PF00830 Ribosomal L28 family SDEG_RS01655 PF03780 Asp23 family, cell envelope-related function SDEG_RS01660 PF13684 Dihydroxyacetone kinase family SDEG_RS01660 PF02734 DAK2 domain SDEG_RS01670 PF00005 ABC transporter SDEG_RS01675 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS01685 PF02673 Bacitracin resistance protein BacA SDEG_RS01690 PF05389 Negative regulator of genetic competence (MecA) SDEG_RS01695 PF00953 Glycosyl transferase family 4 SDEG_RS01700 PF00005 ABC transporter SDEG_RS01705 PF01458 Uncharacterized protein family (UPF0051) SDEG_RS01710 PF00266 Aminotransferase class-V SDEG_RS01715 PF01592 NifU-like N terminal domain SDEG_RS01720 PF01458 Uncharacterized protein family (UPF0051) SDEG_RS01725 PF00768 D-alanyl-D-alanine carboxypeptidase SDEG_RS01725 PF07943 Penicillin-binding protein 5, C-terminal domain SDEG_RS01730 PF00768 D-alanyl-D-alanine carboxypeptidase SDEG_RS01730 PF07943 Penicillin-binding protein 5, C-terminal domain SDEG_RS01735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDEG_RS01740 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS01745 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS01745 PF12911 N-terminal TM domain of oligopeptide transport permease C SDEG_RS01750 PF00005 ABC transporter SDEG_RS01750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDEG_RS01755 PF00005 ABC transporter SDEG_RS01755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDEG_RS01760 PF13936 Helix-turn-helix domain SDEG_RS01800 PF13936 Helix-turn-helix domain SDEG_RS01810 PF01926 50S ribosome-binding GTPase SDEG_RS01815 PF01985 CRS1 / YhbY (CRM) domain SDEG_RS01820 PF01467 Cytidylyltransferase-like SDEG_RS01825 PF01966 HD domain SDEG_RS01840 PF13649 Methyltransferase domain SDEG_RS01845 PF05636 HIGH Nucleotidyl Transferase SDEG_RS01850 PF13411 MerR HTH family regulatory protein SDEG_RS01850 PF07739 TipAS antibiotic-recognition domain SDEG_RS01870 PF04055 Radical SAM superfamily SDEG_RS01870 PF06968 Biotin and Thiamin Synthesis associated domain SDEG_RS01875 PF01709 Transcriptional regulator SDEG_RS01880 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDEG_RS01885 PF03180 NLPA lipoprotein SDEG_RS01890 PF03180 NLPA lipoprotein SDEG_RS01895 PF07687 Peptidase dimerisation domain SDEG_RS01895 PF01546 Peptidase family M20/M25/M40 SDEG_RS01900 PF00005 ABC transporter SDEG_RS01900 PF09383 NIL domain SDEG_RS01905 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS01910 PF05525 Branched-chain amino acid transport protein SDEG_RS01915 PF00375 Sodium:dicarboxylate symporter family SDEG_RS01920 PF02080 TrkA-C domain SDEG_RS01920 PF02254 TrkA-N domain SDEG_RS01925 PF02386 Cation transport protein SDEG_RS01930 PF02527 rRNA small subunit methyltransferase G SDEG_RS01935 PF04011 LemA family SDEG_RS01940 PF01435 Peptidase family M48 SDEG_RS01950 PF00072 Response regulator receiver domain SDEG_RS01950 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS01955 PF18719 ArlS sensor domain SDEG_RS01955 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS01960 PF03477 ATP cone domain SDEG_RS01970 PF07319 Primosomal protein DnaI N-terminus SDEG_RS01970 PF01695 IstB-like ATP binding protein SDEG_RS01975 PF01926 50S ribosome-binding GTPase SDEG_RS01975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SDEG_RS01980 PF00271 Helicase conserved C-terminal domain SDEG_RS01980 PF12419 SNF2 Helicase protein SDEG_RS01980 PF00176 SNF2 family N-terminal domain SDEG_RS01990 PF01225 Mur ligase family, catalytic domain SDEG_RS01990 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS01990 PF08245 Mur ligase middle domain SDEG_RS02000 PF02618 YceG-like family SDEG_RS02005 PF01272 Transcription elongation factor, GreA/GreB, C-term SDEG_RS02005 PF03449 Transcription elongation factor, N-terminal SDEG_RS02010 PF02096 60Kd inner membrane protein SDEG_RS02015 PF00708 Acylphosphatase SDEG_RS02020 PF00588 SpoU rRNA Methylase family SDEG_RS02020 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDEG_RS02030 PF01027 Inhibitor of apoptosis-promoting Bax1 SDEG_RS02035 PF03672 Uncharacterised protein family (UPF0154) SDEG_RS02040 PF01177 Asp/Glu/Hydantoin racemase SDEG_RS02045 PF01725 Ham1 family SDEG_RS02055 PF00005 ABC transporter SDEG_RS02055 PF00571 CBS domain SDEG_RS02065 PF02616 Segregation and condensation protein ScpA SDEG_RS02070 PF04079 Segregation and condensation complex subunit ScpB SDEG_RS02075 PF00849 RNA pseudouridylate synthase SDEG_RS02075 PF01479 S4 domain SDEG_RS02080 PF01809 Putative membrane protein insertion efficiency factor SDEG_RS02085 PF00588 SpoU rRNA Methylase family SDEG_RS02090 PF12822 ECF transporter, substrate-specific component SDEG_RS02095 PF01569 PAP2 superfamily SDEG_RS02100 PF16199 Radical_SAM C-terminal domain SDEG_RS02100 PF04055 Radical SAM superfamily SDEG_RS02105 PF06962 Putative rRNA methylase SDEG_RS02110 PF01595 Cyclin M transmembrane N-terminal domain SDEG_RS02110 PF03471 Transporter associated domain SDEG_RS02110 PF00571 CBS domain SDEG_RS02115 PF04055 Radical SAM superfamily SDEG_RS02120 PF01368 DHH family SDEG_RS02120 PF02833 DHHA2 domain SDEG_RS02130 PF01032 FecCD transport family SDEG_RS02135 PF01032 FecCD transport family SDEG_RS02140 PF01497 Periplasmic binding protein SDEG_RS02145 PF00005 ABC transporter SDEG_RS02150 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS02150 PF08245 Mur ligase middle domain SDEG_RS02155 PF14667 Polysaccharide biosynthesis C-terminal domain SDEG_RS02155 PF01943 Polysaccharide biosynthesis protein SDEG_RS02170 PF00574 Clp protease SDEG_RS02185 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SDEG_RS02190 PF13458 Periplasmic binding protein SDEG_RS02195 PF02653 Branched-chain amino acid transport system / permease component SDEG_RS02200 PF02653 Branched-chain amino acid transport system / permease component SDEG_RS02200 PF11862 Domain of unknown function (DUF3382) SDEG_RS02205 PF00005 ABC transporter SDEG_RS02205 PF12399 Branched-chain amino acid ATP-binding cassette transporter SDEG_RS02210 PF00005 ABC transporter SDEG_RS02215 PF00571 CBS domain SDEG_RS02220 PF02223 Thymidylate kinase SDEG_RS02225 PF09115 DNA polymerase III, delta subunit, C terminal SDEG_RS02230 PF04468 PSP1 C-terminal conserved region SDEG_RS02235 PF06156 Initiation control protein YabA SDEG_RS02240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SDEG_RS02250 PF03932 CutC family SDEG_RS02255 PF00266 Aminotransferase class-V SDEG_RS02265 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SDEG_RS02265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SDEG_RS02270 PF03960 ArsC family SDEG_RS02285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDEG_RS02285 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS02295 PF03372 Endonuclease/Exonuclease/phosphatase family SDEG_RS02305 PF02652 L-lactate permease SDEG_RS02310 PF01070 FMN-dependent dehydrogenase SDEG_RS02330 PF09334 tRNA synthetases class I (M) SDEG_RS02330 PF01588 Putative tRNA binding domain SDEG_RS02335 PF00268 Ribonucleotide reductase, small chain SDEG_RS02340 PF07972 NrdI Flavodoxin like SDEG_RS02345 PF08343 Ribonucleotide reductase N-terminal SDEG_RS02345 PF00317 Ribonucleotide reductase, all-alpha domain SDEG_RS02345 PF02867 Ribonucleotide reductase, barrel domain SDEG_RS02350 PF05525 Branched-chain amino acid transport protein SDEG_RS02385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDEG_RS02385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDEG_RS02390 PF07690 Major Facilitator Superfamily SDEG_RS02395 PF00132 Bacterial transferase hexapeptide (six repeats) SDEG_RS02395 PF14602 Hexapeptide repeat of succinyl-transferase SDEG_RS02395 PF12804 MobA-like NTP transferase domain SDEG_RS02400 PF00293 NUDIX domain SDEG_RS02410 PF01048 Phosphorylase superfamily SDEG_RS02420 PF01297 Zinc-uptake complex component A periplasmic SDEG_RS02425 PF00005 ABC transporter SDEG_RS02430 PF00950 ABC 3 transport family SDEG_RS02435 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDEG_RS02440 PF01580 FtsK/SpoIIIE family SDEG_RS02440 PF17854 FtsK alpha domain SDEG_RS02440 PF09397 Ftsk gamma domain SDEG_RS02450 PF13936 Helix-turn-helix domain SDEG_RS02455 PF03946 Ribosomal protein L11, N-terminal domain SDEG_RS02455 PF00298 Ribosomal protein L11, RNA binding domain SDEG_RS02460 PF00687 Ribosomal protein L1p/L10e family SDEG_RS02470 PF00696 Amino acid kinase family SDEG_RS02475 PF01765 Ribosome recycling factor SDEG_RS02485 PF01625 Peptide methionine sulfoxide reductase SDEG_RS02490 PF06855 YozE SAM-like fold SDEG_RS02500 PF06100 MCRA family SDEG_RS02505 PF02562 PhoH-like protein SDEG_RS02510 PF03167 Uracil DNA glycosylase superfamily SDEG_RS02515 PF02130 Uncharacterized protein family UPF0054 SDEG_RS02520 PF01219 Prokaryotic diacylglycerol kinase SDEG_RS02525 PF07650 KH domain SDEG_RS02525 PF01926 50S ribosome-binding GTPase SDEG_RS02530 PF03412 Peptidase C39 family SDEG_RS02530 PF00005 ABC transporter SDEG_RS02530 PF00664 ABC transporter transmembrane region SDEG_RS02560 PF04397 LytTr DNA-binding domain SDEG_RS02560 PF00072 Response regulator receiver domain SDEG_RS02575 PF00664 ABC transporter transmembrane region SDEG_RS02575 PF03412 Peptidase C39 family SDEG_RS02575 PF00005 ABC transporter SDEG_RS02580 PF13936 Helix-turn-helix domain SDEG_RS02630 PF01381 Helix-turn-helix SDEG_RS02635 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SDEG_RS02635 PF06827 Zinc finger found in FPG and IleRS SDEG_RS02635 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SDEG_RS02640 PF01121 Dephospho-CoA kinase SDEG_RS02645 PF13732 Domain of unknown function (DUF4162) SDEG_RS02645 PF00005 ABC transporter SDEG_RS02655 PF05872 Bacterial protein of unknown function (DUF853) SDEG_RS02665 PF00083 Sugar (and other) transporter SDEG_RS02665 PF07690 Major Facilitator Superfamily SDEG_RS02675 PF00575 S1 RNA binding domain SDEG_RS02675 PF00773 RNB domain SDEG_RS02675 PF08206 Ribonuclease B OB domain SDEG_RS02675 PF17876 Cold shock domain SDEG_RS02680 PF01668 SmpB protein SDEG_RS02690 PF00535 Glycosyl transferase family 2 SDEG_RS02700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDEG_RS02705 PF00881 Nitroreductase family SDEG_RS02710 PF00557 Metallopeptidase family M24 SDEG_RS02710 PF01321 Creatinase/Prolidase N-terminal domain SDEG_RS02715 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS02720 PF00128 Alpha amylase, catalytic domain SDEG_RS02720 PF09154 Domain of unknown function (DUF1939) SDEG_RS02725 PF00534 Glycosyl transferases group 1 SDEG_RS02725 PF13439 Glycosyltransferase Family 4 SDEG_RS02730 PF00534 Glycosyl transferases group 1 SDEG_RS02730 PF13439 Glycosyltransferase Family 4 SDEG_RS02735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDEG_RS02735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDEG_RS02735 PF03129 Anticodon binding domain SDEG_RS02735 PF02824 TGS domain SDEG_RS02740 PF00005 ABC transporter SDEG_RS02760 PF02733 Dak1 domain SDEG_RS02770 PF02733 Dak1 domain SDEG_RS02775 PF02734 DAK2 domain SDEG_RS02780 PF03610 PTS system fructose IIA component SDEG_RS02785 PF00230 Major intrinsic protein SDEG_RS02795 PF00108 Thiolase, N-terminal domain SDEG_RS02795 PF02803 Thiolase, C-terminal domain SDEG_RS02815 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS02820 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDEG_RS02825 PF00005 ABC transporter SDEG_RS02830 PF00072 Response regulator receiver domain SDEG_RS02830 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS02835 PF13426 PAS domain SDEG_RS02835 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS02835 PF00672 HAMP domain SDEG_RS02840 PF00753 Metallo-beta-lactamase superfamily SDEG_RS02845 PF00035 Double-stranded RNA binding motif SDEG_RS02845 PF14622 Ribonuclease-III-like SDEG_RS02850 PF06470 SMC proteins Flexible Hinge Domain SDEG_RS02850 PF02463 RecF/RecN/SMC N terminal domain SDEG_RS02855 PF00746 LPXTG cell wall anchor motif SDEG_RS02855 PF06280 Fn3-like domain SDEG_RS02855 PF00082 Subtilase family SDEG_RS02855 PF02225 PA domain SDEG_RS02875 PF00448 SRP54-type protein, GTPase domain SDEG_RS02875 PF02881 SRP54-type protein, helical bundle domain SDEG_RS02885 PF00874 PRD domain SDEG_RS02885 PF03123 CAT RNA binding domain SDEG_RS02890 PF00367 phosphotransferase system, EIIB SDEG_RS02890 PF02378 Phosphotransferase system, EIIC SDEG_RS02890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDEG_RS02895 PF00232 Glycosyl hydrolase family 1 SDEG_RS02900 PF09323 Domain of unknown function (DUF1980) SDEG_RS02905 PF03773 Predicted permease SDEG_RS02920 PF00072 Response regulator receiver domain SDEG_RS02920 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS02925 PF16736 Single Cache-like SDEG_RS02925 PF00989 PAS fold SDEG_RS02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS02925 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS02930 PF12849 PBP superfamily domain SDEG_RS02935 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS02945 PF00005 ABC transporter SDEG_RS02950 PF01895 PhoU domain SDEG_RS02965 PF16921 Tex protein YqgF-like domain SDEG_RS02965 PF09371 Tex-like protein N-terminal domain SDEG_RS02965 PF00575 S1 RNA binding domain SDEG_RS02965 PF17674 HHH domain SDEG_RS02970 PF10263 SprT-like family SDEG_RS02980 PF02603 HPr Serine kinase N terminus SDEG_RS02980 PF07475 HPr Serine kinase C-terminal domain SDEG_RS02985 PF01790 Prolipoprotein diacylglyceryl transferase SDEG_RS02995 PF12732 YtxH-like protein SDEG_RS03010 PF16325 Peptidase family U32 C-terminal domain SDEG_RS03010 PF01136 Peptidase family U32 SDEG_RS03015 PF02229 Transcriptional Coactivator p15 (PC4) SDEG_RS03030 PF00909 Ammonium Transporter Family SDEG_RS03035 PF01336 OB-fold nucleic acid binding domain SDEG_RS03035 PF00152 tRNA synthetases class II (D, K and N) SDEG_RS03055 PF04073 Aminoacyl-tRNA editing domain SDEG_RS03060 PF09515 Thiamine transporter protein (Thia_YuaJ) SDEG_RS03080 PF00255 Glutathione peroxidase SDEG_RS03085 PF01432 Peptidase family M3 SDEG_RS03085 PF08439 Oligopeptidase F SDEG_RS03090 PF00311 Phosphoenolpyruvate carboxylase SDEG_RS03095 PF01098 Cell cycle protein SDEG_RS03100 PF04539 Sigma-70 region 3 SDEG_RS03100 PF04545 Sigma-70, region 4 SDEG_RS03100 PF04542 Sigma-70 region 2 SDEG_RS03110 PF03144 Elongation factor Tu domain 2 SDEG_RS03110 PF03143 Elongation factor Tu C-terminal domain SDEG_RS03110 PF00009 Elongation factor Tu GTP binding domain SDEG_RS03125 PF00535 Glycosyl transferase family 2 SDEG_RS03130 PF00121 Triosephosphate isomerase SDEG_RS03135 PF00665 Integrase core domain SDEG_RS03135 PF13276 HTH-like domain SDEG_RS03135 PF13333 Integrase core domain SDEG_RS03165 PF02388 FemAB family SDEG_RS03175 PF01966 HD domain SDEG_RS03185 PF00689 Cation transporting ATPase, C-terminus SDEG_RS03185 PF00690 Cation transporter/ATPase, N-terminus SDEG_RS03195 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS03205 PF03613 PTS system mannose/fructose/sorbose family IID component SDEG_RS03210 PF03609 PTS system sorbose-specific iic component SDEG_RS03215 PF03830 PTS system sorbose subfamily IIB component SDEG_RS03220 PF07470 Glycosyl Hydrolase Family 88 SDEG_RS03250 PF02278 Polysaccharide lyase family 8, super-sandwich domain SDEG_RS03250 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SDEG_RS03250 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SDEG_RS03265 PF13683 Integrase core domain SDEG_RS03265 PF01610 Transposase SDEG_RS03275 PF13419 Haloacid dehalogenase-like hydrolase SDEG_RS03280 PF06874 Firmicute fructose-1,6-bisphosphatase SDEG_RS03285 PF08331 Domain of unknown function (DUF1730) SDEG_RS03290 PF03462 PCRF domain SDEG_RS03290 PF00472 RF-1 domain SDEG_RS03295 PF00005 ABC transporter SDEG_RS03300 PF02687 FtsX-like permease family SDEG_RS03300 PF18075 FtsX extracellular domain SDEG_RS03305 PF00753 Metallo-beta-lactamase superfamily SDEG_RS03310 PF13307 Helicase C-terminal domain SDEG_RS03310 PF00929 Exonuclease SDEG_RS03310 PF04851 Type III restriction enzyme, res subunit SDEG_RS03315 PF00155 Aminotransferase class I and II SDEG_RS03320 PF00152 tRNA synthetases class II (D, K and N) SDEG_RS03320 PF01336 OB-fold nucleic acid binding domain SDEG_RS03330 PF03668 P-loop ATPase protein family SDEG_RS03335 PF01933 Uncharacterised protein family UPF0052 SDEG_RS03340 PF10298 WhiA N-terminal LAGLIDADG-like domain SDEG_RS03340 PF14527 WhiA LAGLIDADG-like domain SDEG_RS03340 PF02650 WhiA C-terminal HTH domain SDEG_RS03345 PF03577 Peptidase family C69 SDEG_RS03350 PF01297 Zinc-uptake complex component A periplasmic SDEG_RS03350 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SDEG_RS03355 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS03355 PF07702 UTRA domain SDEG_RS03360 PF01380 SIS domain SDEG_RS03370 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS03375 PF01301 Glycosyl hydrolases family 35 SDEG_RS03380 PF03830 PTS system sorbose subfamily IIB component SDEG_RS03380 PF03610 PTS system fructose IIA component SDEG_RS03385 PF03609 PTS system sorbose-specific iic component SDEG_RS03390 PF03613 PTS system mannose/fructose/sorbose family IID component SDEG_RS03400 PF01197 Ribosomal protein L31 SDEG_RS03415 PF02272 DHHA1 domain SDEG_RS03415 PF01368 DHH family SDEG_RS03420 PF13673 Acetyltransferase (GNAT) domain SDEG_RS03425 PF02798 Glutathione S-transferase, N-terminal domain SDEG_RS03430 PF00962 Adenosine/AMP deaminase SDEG_RS03435 PF00258 Flavodoxin SDEG_RS03445 PF00654 Voltage gated chloride channel SDEG_RS03450 PF01245 Ribosomal protein L19 SDEG_RS03460 PF01098 Cell cycle protein SDEG_RS03470 PF01751 Toprim domain SDEG_RS03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS03470 PF00986 DNA gyrase B subunit, carboxyl terminus SDEG_RS03470 PF00204 DNA gyrase B SDEG_RS03475 PF06160 Septation ring formation regulator, EzrA SDEG_RS03490 PF00113 Enolase, C-terminal TIM barrel domain SDEG_RS03490 PF03952 Enolase, N-terminal domain SDEG_RS03520 PF00005 ABC transporter SDEG_RS03540 PF06177 QueT transporter SDEG_RS03545 PF12826 Helix-hairpin-helix motif SDEG_RS03545 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SDEG_RS03545 PF03120 NAD-dependent DNA ligase OB-fold domain SDEG_RS03545 PF01653 NAD-dependent DNA ligase adenylation domain SDEG_RS03545 PF00533 BRCA1 C Terminus (BRCT) domain SDEG_RS03550 PF00781 Diacylglycerol kinase catalytic domain SDEG_RS03555 PF00128 Alpha amylase, catalytic domain SDEG_RS03555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDEG_RS03555 PF17999 Pullulanase N1-terminal domain SDEG_RS03560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDEG_RS03560 PF02806 Alpha amylase, C-terminal all-beta domain SDEG_RS03560 PF00128 Alpha amylase, catalytic domain SDEG_RS03565 PF00132 Bacterial transferase hexapeptide (six repeats) SDEG_RS03565 PF00483 Nucleotidyl transferase SDEG_RS03570 PF00483 Nucleotidyl transferase SDEG_RS03575 PF08323 Starch synthase catalytic domain SDEG_RS03575 PF00534 Glycosyl transferases group 1 SDEG_RS03580 PF00137 ATP synthase subunit C SDEG_RS03585 PF00119 ATP synthase A chain SDEG_RS03590 PF00430 ATP synthase B/B' CF(0) SDEG_RS03595 PF00213 ATP synthase delta (OSCP) subunit SDEG_RS03600 PF00306 ATP synthase alpha/beta chain, C terminal domain SDEG_RS03600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDEG_RS03600 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDEG_RS03605 PF00231 ATP synthase SDEG_RS03610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDEG_RS03610 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDEG_RS03615 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SDEG_RS03615 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SDEG_RS03625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDEG_RS03635 PF01223 DNA/RNA non-specific endonuclease SDEG_RS03640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SDEG_RS03640 PF01409 tRNA synthetases class II core domain (F) SDEG_RS03645 PF03484 tRNA synthetase B5 domain SDEG_RS03645 PF03147 Ferredoxin-fold anticodon binding domain SDEG_RS03645 PF01588 Putative tRNA binding domain SDEG_RS03645 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SDEG_RS03645 PF03483 B3/4 domain SDEG_RS03660 PF02687 FtsX-like permease family SDEG_RS03665 PF00005 ABC transporter SDEG_RS03670 PF04228 Putative neutral zinc metallopeptidase SDEG_RS03675 PF12705 PD-(D/E)XK nuclease superfamily SDEG_RS03680 PF12705 PD-(D/E)XK nuclease superfamily SDEG_RS03680 PF00580 UvrD/REP helicase N-terminal domain SDEG_RS03680 PF13361 UvrD-like helicase C-terminal domain SDEG_RS03685 PF00155 Aminotransferase class I and II SDEG_RS03690 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDEG_RS03695 PF01165 Ribosomal protein S21 SDEG_RS03700 PF01741 Large-conductance mechanosensitive channel, MscL SDEG_RS03705 PF08275 DNA primase catalytic core, N-terminal domain SDEG_RS03705 PF01807 CHC2 zinc finger SDEG_RS03705 PF10410 DnaB-helicase binding domain of primase SDEG_RS03710 PF04542 Sigma-70 region 2 SDEG_RS03710 PF04539 Sigma-70 region 3 SDEG_RS03710 PF04545 Sigma-70, region 4 SDEG_RS03710 PF00140 Sigma-70 factor, region 1.2 SDEG_RS03710 PF03979 Sigma-70 factor, region 1.1 SDEG_RS03715 PF01883 Iron-sulfur cluster assembly protein SDEG_RS03720 PF04321 RmlD substrate binding domain SDEG_RS03730 PF00535 Glycosyl transferase family 2 SDEG_RS03730 PF01501 Glycosyl transferase family 8 SDEG_RS03740 PF00005 ABC transporter SDEG_RS03770 PF00535 Glycosyl transferase family 2 SDEG_RS03785 PF16363 GDP-mannose 4,6 dehydratase SDEG_RS03795 PF07687 Peptidase dimerisation domain SDEG_RS03795 PF01546 Peptidase family M20/M25/M40 SDEG_RS03815 PF02224 Cytidylate kinase SDEG_RS03820 PF05198 Translation initiation factor IF-3, N-terminal domain SDEG_RS03820 PF00707 Translation initiation factor IF-3, C-terminal domain SDEG_RS03825 PF01632 Ribosomal protein L35 SDEG_RS03830 PF00453 Ribosomal protein L20 SDEG_RS03835 PF00884 Sulfatase SDEG_RS03840 PF10672 S-adenosylmethionine-dependent methyltransferase SDEG_RS03840 PF17785 PUA-like domain SDEG_RS03845 PF01487 Type I 3-dehydroquinase SDEG_RS03850 PF01264 Chorismate synthase SDEG_RS03855 PF06133 Control of competence regulator ComK, YlbF/YmcA SDEG_RS03860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS03860 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS03865 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS03865 PF08245 Mur ligase middle domain SDEG_RS03875 PF00266 Aminotransferase class-V SDEG_RS03880 PF02926 THUMP domain SDEG_RS03880 PF02568 Thiamine biosynthesis protein (ThiI) SDEG_RS03885 PF09587 Bacterial capsule synthesis protein PGA_cap SDEG_RS03890 PF13936 Helix-turn-helix domain SDEG_RS03895 PF00829 Ribosomal prokaryotic L21 protein SDEG_RS03905 PF01016 Ribosomal L27 protein SDEG_RS03910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDEG_RS03910 PF03466 LysR substrate binding domain SDEG_RS03915 PF01252 Signal peptidase (SPase) II SDEG_RS03920 PF00849 RNA pseudouridylate synthase SDEG_RS03920 PF01479 S4 domain SDEG_RS03930 PF00156 Phosphoribosyl transferase domain SDEG_RS03935 PF00860 Permease family SDEG_RS03940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDEG_RS03940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDEG_RS03945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SDEG_RS03945 PF00117 Glutamine amidotransferase class-I SDEG_RS03950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDEG_RS03950 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SDEG_RS03950 PF02142 MGS-like domain SDEG_RS03955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDEG_RS03960 PF00005 ABC transporter SDEG_RS03965 PF12704 MacB-like periplasmic core domain SDEG_RS03965 PF02687 FtsX-like permease family SDEG_RS03975 PF03009 Glycerophosphoryl diester phosphodiesterase family SDEG_RS03980 PF00886 Ribosomal protein S16 SDEG_RS03995 PF01782 RimM N-terminal domain SDEG_RS03995 PF05239 PRC-barrel domain SDEG_RS04000 PF01746 tRNA (Guanine-1)-methyltransferase SDEG_RS04005 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS04015 PF08546 Ketopantoate reductase PanE/ApbA C terminal SDEG_RS04015 PF02558 Ketopantoate reductase PanE/ApbA SDEG_RS04020 PF08220 DeoR-like helix-turn-helix domain SDEG_RS04020 PF00455 DeoR C terminal sensor domain SDEG_RS04025 PF00294 pfkB family carbohydrate kinase SDEG_RS04030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS04030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS04035 PF01476 LysM domain SDEG_RS04035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDEG_RS04040 PF01476 LysM domain SDEG_RS04040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDEG_RS04055 PF02645 Uncharacterised protein, DegV family COG1307 SDEG_RS04060 PF13735 tRNA nucleotidyltransferase domain 2 putative SDEG_RS04060 PF12627 Probable RNA and SrmB- binding site of polymerase A SDEG_RS04060 PF01743 Poly A polymerase head domain SDEG_RS04065 PF00005 ABC transporter SDEG_RS04065 PF12848 ABC transporter SDEG_RS04065 PF16326 ABC transporter C-terminal domain SDEG_RS04070 PF00664 ABC transporter transmembrane region SDEG_RS04070 PF00005 ABC transporter SDEG_RS04075 PF00664 ABC transporter transmembrane region SDEG_RS04075 PF00005 ABC transporter SDEG_RS04080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SDEG_RS04080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SDEG_RS04085 PF01327 Polypeptide deformylase SDEG_RS04090 PF00149 Calcineurin-like phosphoesterase SDEG_RS04090 PF02872 5'-nucleotidase, C-terminal domain SDEG_RS04090 PF17936 Bacterial Ig domain SDEG_RS04100 PF00072 Response regulator receiver domain SDEG_RS04100 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS04105 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS04115 PF13936 Helix-turn-helix domain SDEG_RS04120 PF00664 ABC transporter transmembrane region SDEG_RS04120 PF00005 ABC transporter SDEG_RS04125 PF00664 ABC transporter transmembrane region SDEG_RS04125 PF00005 ABC transporter SDEG_RS04130 PF10509 Galactokinase galactose-binding signature SDEG_RS04130 PF08544 GHMP kinases C terminal SDEG_RS04130 PF00288 GHMP kinases N terminal domain SDEG_RS04140 PF00288 GHMP kinases N terminal domain SDEG_RS04140 PF08544 GHMP kinases C terminal SDEG_RS04145 PF01070 FMN-dependent dehydrogenase SDEG_RS04155 PF00746 LPXTG cell wall anchor motif SDEG_RS04155 PF17961 Bacterial Ig domain SDEG_RS04155 PF17210 SdrD B-like domain SDEG_RS04155 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SDEG_RS04155 PF04650 YSIRK type signal peptide SDEG_RS04160 PF13936 Helix-turn-helix domain SDEG_RS04180 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SDEG_RS04185 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SDEG_RS04185 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SDEG_RS04190 PF13936 Helix-turn-helix domain SDEG_RS04195 PF00303 Thymidylate synthase SDEG_RS04200 PF00186 Dihydrofolate reductase SDEG_RS04210 PF06689 ClpX C4-type zinc finger SDEG_RS04210 PF07724 AAA domain (Cdc48 subfamily) SDEG_RS04210 PF10431 C-terminal, D2-small domain, of ClpB protein SDEG_RS04215 PF01926 50S ribosome-binding GTPase SDEG_RS04225 PF17871 AAA lid domain SDEG_RS04225 PF10431 C-terminal, D2-small domain, of ClpB protein SDEG_RS04225 PF07724 AAA domain (Cdc48 subfamily) SDEG_RS04225 PF00004 ATPase family associated with various cellular activities (AAA) SDEG_RS04235 PF00466 Ribosomal protein L10 SDEG_RS04240 PF00542 Ribosomal protein L7/L12 C-terminal domain SDEG_RS04240 PF16320 Ribosomal protein L7/L12 dimerisation domain SDEG_RS04245 PF00768 D-alanyl-D-alanine carboxypeptidase SDEG_RS04245 PF07943 Penicillin-binding protein 5, C-terminal domain SDEG_RS04250 PF01522 Polysaccharide deacetylase SDEG_RS04255 PF00742 Homoserine dehydrogenase SDEG_RS04255 PF03447 Homoserine dehydrogenase, NAD binding domain SDEG_RS04260 PF08544 GHMP kinases C terminal SDEG_RS04260 PF00288 GHMP kinases N terminal domain SDEG_RS04265 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS04265 PF08245 Mur ligase middle domain SDEG_RS04270 PF01227 GTP cyclohydrolase I SDEG_RS04275 PF00809 Pterin binding enzyme SDEG_RS04280 PF02152 Dihydroneopterin aldolase SDEG_RS04285 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SDEG_RS04290 PF01565 FAD binding domain SDEG_RS04290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SDEG_RS04295 PF00005 ABC transporter SDEG_RS04295 PF08402 TOBE domain SDEG_RS04300 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS04305 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS04310 PF13416 Bacterial extracellular solute-binding protein SDEG_RS04315 PF00072 Response regulator receiver domain SDEG_RS04320 PF17203 Single cache domain 3 SDEG_RS04320 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SDEG_RS04320 PF00989 PAS fold SDEG_RS04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS04325 PF03390 2-hydroxycarboxylate transporter family SDEG_RS04330 PF00390 Malic enzyme, N-terminal domain SDEG_RS04330 PF03949 Malic enzyme, NAD binding domain SDEG_RS04335 PF00654 Voltage gated chloride channel SDEG_RS04340 PF12833 Helix-turn-helix domain SDEG_RS04350 PF01594 AI-2E family transporter SDEG_RS04355 PF04002 RadC-like JAB domain SDEG_RS04360 PF07722 Peptidase C26 SDEG_RS04365 PF02629 CoA binding domain SDEG_RS04365 PF06971 Putative DNA-binding protein N-terminus SDEG_RS04380 PF00266 Aminotransferase class-V SDEG_RS04385 PF14572 Phosphoribosyl synthetase-associated domain SDEG_RS04385 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SDEG_RS04395 PF04607 Region found in RelA / SpoT proteins SDEG_RS04400 PF01513 ATP-NAD kinase SDEG_RS04405 PF00849 RNA pseudouridylate synthase SDEG_RS04405 PF01479 S4 domain SDEG_RS04410 PF01515 Phosphate acetyl/butaryl transferase SDEG_RS04415 PF00106 short chain dehydrogenase SDEG_RS04425 PF00005 ABC transporter SDEG_RS04425 PF00571 CBS domain SDEG_RS04430 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS04435 PF00478 IMP dehydrogenase / GMP reductase domain SDEG_RS04440 PF00156 Phosphoribosyl transferase domain SDEG_RS04445 PF00860 Permease family SDEG_RS04450 PF02424 ApbE family SDEG_RS04455 PF01361 Tautomerase enzyme SDEG_RS04460 PF00265 Thymidine kinase SDEG_RS04465 PF00472 RF-1 domain SDEG_RS04465 PF03462 PCRF domain SDEG_RS04470 PF05175 Methyltransferase small domain SDEG_RS04475 PF01300 Telomere recombination SDEG_RS04485 PF00464 Serine hydroxymethyltransferase SDEG_RS04500 PF00664 ABC transporter transmembrane region SDEG_RS04500 PF00005 ABC transporter SDEG_RS04505 PF00664 ABC transporter transmembrane region SDEG_RS04505 PF00005 ABC transporter SDEG_RS04510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS04510 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS04515 PF01872 RibD C-terminal domain SDEG_RS04520 PF00056 lactate/malate dehydrogenase, NAD binding domain SDEG_RS04520 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SDEG_RS04525 PF03989 DNA gyrase C-terminal domain, beta-propeller SDEG_RS04525 PF00521 DNA gyrase/topoisomerase IV, subunit A SDEG_RS04530 PF04203 Sortase domain SDEG_RS04535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDEG_RS04550 PF01297 Zinc-uptake complex component A periplasmic SDEG_RS04585 PF00005 ABC transporter SDEG_RS04590 PF12704 MacB-like periplasmic core domain SDEG_RS04590 PF02687 FtsX-like permease family SDEG_RS04595 PF00072 Response regulator receiver domain SDEG_RS04595 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS04600 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS04600 PF02702 Osmosensitive K+ channel His kinase sensor domain SDEG_RS04600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS04600 PF13493 Domain of unknown function (DUF4118) SDEG_RS04605 PF05257 CHAP domain SDEG_RS04605 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDEG_RS04625 PF00082 Subtilase family SDEG_RS04625 PF02225 PA domain SDEG_RS04625 PF06280 Fn3-like domain SDEG_RS04630 PF01297 Zinc-uptake complex component A periplasmic SDEG_RS04640 PF05532 CsbD-like SDEG_RS04645 PF00005 ABC transporter SDEG_RS04650 PF00005 ABC transporter SDEG_RS04650 PF12558 ATP-binding cassette cobalt transporter SDEG_RS04655 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS04660 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS04675 PF13936 Helix-turn-helix domain SDEG_RS04680 PF02388 FemAB family SDEG_RS04685 PF00999 Sodium/hydrogen exchanger family SDEG_RS04700 PF02963 Restriction endonuclease EcoRI SDEG_RS04705 PF13651 Adenine-specific methyltransferase EcoRI SDEG_RS04715 PF02540 NAD synthase SDEG_RS04715 PF00958 GMP synthase C terminal domain SDEG_RS04715 PF00117 Glutamine amidotransferase class-I SDEG_RS04725 PF07702 UTRA domain SDEG_RS04725 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS04730 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SDEG_RS04735 PF00448 SRP54-type protein, GTPase domain SDEG_RS04735 PF02978 Signal peptide binding domain SDEG_RS04735 PF02881 SRP54-type protein, helical bundle domain SDEG_RS04755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDEG_RS04755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDEG_RS04760 PF00072 Response regulator receiver domain SDEG_RS04760 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS04765 PF16736 Single Cache-like SDEG_RS04765 PF00989 PAS fold SDEG_RS04765 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS04770 PF07883 Cupin domain SDEG_RS04780 PF00589 Phage integrase family SDEG_RS04780 PF13495 Phage integrase, N-terminal SAM-like domain SDEG_RS04795 PF02424 ApbE family SDEG_RS04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS04810 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS04810 PF00072 Response regulator receiver domain SDEG_RS04820 PF00005 ABC transporter SDEG_RS04825 PF03572 Peptidase family S41 SDEG_RS04835 PF08218 Citrate lyase ligase C-terminal domain SDEG_RS04840 PF02436 Conserved carboxylase domain SDEG_RS04840 PF00682 HMGL-like SDEG_RS04840 PF00364 Biotin-requiring enzyme SDEG_RS04850 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SDEG_RS04855 PF04223 Citrate lyase, alpha subunit (CitF) SDEG_RS04860 PF03328 HpcH/HpaI aldolase/citrate lyase family SDEG_RS04865 PF06857 Malonate decarboxylase delta subunit (MdcD) SDEG_RS04875 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SDEG_RS04880 PF00364 Biotin-requiring enzyme SDEG_RS04890 PF03600 Citrate transporter SDEG_RS04900 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SDEG_RS04910 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SDEG_RS04915 PF00364 Biotin-requiring enzyme SDEG_RS04925 PF00682 HMGL-like SDEG_RS04925 PF02436 Conserved carboxylase domain SDEG_RS04925 PF00364 Biotin-requiring enzyme SDEG_RS04930 PF01134 Glucose inhibited division protein A SDEG_RS04945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDEG_RS04945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SDEG_RS04965 PF01396 Topoisomerase DNA binding C4 zinc finger SDEG_RS04965 PF01751 Toprim domain SDEG_RS04965 PF01131 DNA topoisomerase SDEG_RS04970 PF18255 DNA processing protein A sterile alpha motif domain SDEG_RS04970 PF02481 DNA recombination-mediator protein A SDEG_RS04975 PF01351 Ribonuclease HII SDEG_RS04980 PF01926 50S ribosome-binding GTPase SDEG_RS04990 PF01381 Helix-turn-helix SDEG_RS05000 PF03006 Haemolysin-III related SDEG_RS05015 PF05532 CsbD-like SDEG_RS05020 PF00005 ABC transporter SDEG_RS05020 PF12848 ABC transporter SDEG_RS05025 PF02821 Staphylokinase/Streptokinase family SDEG_RS05040 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS05040 PF00155 Aminotransferase class I and II SDEG_RS05045 PF13597 Anaerobic ribonucleoside-triphosphate reductase SDEG_RS05045 PF03477 ATP cone domain SDEG_RS05050 PF02774 Semialdehyde dehydrogenase, dimerisation domain SDEG_RS05050 PF01118 Semialdehyde dehydrogenase, NAD binding domain SDEG_RS05055 PF13091 PLD-like domain SDEG_RS05070 PF01610 Transposase SDEG_RS05070 PF13683 Integrase core domain SDEG_RS05085 PF01268 Formate--tetrahydrofolate ligase SDEG_RS05090 PF03099 Biotin/lipoate A/B protein ligase family SDEG_RS05090 PF10437 Bacterial lipoate protein ligase C-terminus SDEG_RS05100 PF01661 Macro domain SDEG_RS05105 PF01597 Glycine cleavage H-protein SDEG_RS05110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SDEG_RS05115 PF03099 Biotin/lipoate A/B protein ligase family SDEG_RS05120 PF04127 DNA / pantothenate metabolism flavoprotein SDEG_RS05120 PF02441 Flavoprotein SDEG_RS05125 PF02441 Flavoprotein SDEG_RS05130 PF12822 ECF transporter, substrate-specific component SDEG_RS05135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDEG_RS05135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDEG_RS05135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDEG_RS05135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDEG_RS05140 PF02653 Branched-chain amino acid transport system / permease component SDEG_RS05145 PF02653 Branched-chain amino acid transport system / permease component SDEG_RS05150 PF00005 ABC transporter SDEG_RS05155 PF02608 ABC transporter substrate-binding protein PnrA-like SDEG_RS05160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDEG_RS05165 PF01791 DeoC/LacD family aldolase SDEG_RS05170 PF02885 Glycosyl transferase family, helical bundle domain SDEG_RS05170 PF00591 Glycosyl transferase family, a/b domain SDEG_RS05170 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SDEG_RS05175 PF05175 Methyltransferase small domain SDEG_RS05180 PF00485 Phosphoribulokinase / Uridine kinase family SDEG_RS05185 PF01649 Ribosomal protein S20 SDEG_RS05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS05190 PF00512 His Kinase A (phospho-acceptor) domain SDEG_RS05195 PF00072 Response regulator receiver domain SDEG_RS05195 PF00486 Transcriptional regulatory protein, C terminal SDEG_RS05200 PF11838 ERAP1-like C-terminal domain SDEG_RS05200 PF01433 Peptidase family M1 domain SDEG_RS05205 PF01895 PhoU domain SDEG_RS05210 PF00005 ABC transporter SDEG_RS05215 PF00005 ABC transporter SDEG_RS05220 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS05225 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS05230 PF12849 PBP superfamily domain SDEG_RS05235 PF17126 RsmF rRNA methyltransferase first C-terminal domain SDEG_RS05235 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SDEG_RS05235 PF01189 16S rRNA methyltransferase RsmB/F SDEG_RS05240 PF00459 Inositol monophosphatase family SDEG_RS05245 PF05256 Uncharacterised protein family (UPF0223) SDEG_RS05250 PF03960 ArsC family SDEG_RS05255 PF06574 FAD synthetase SDEG_RS05255 PF01687 Riboflavin kinase SDEG_RS05265 PF01509 TruB family pseudouridylate synthase (N terminal domain) SDEG_RS05265 PF16198 tRNA pseudouridylate synthase B C-terminal domain SDEG_RS05290 PF02687 FtsX-like permease family SDEG_RS05290 PF00005 ABC transporter SDEG_RS05290 PF12704 MacB-like periplasmic core domain SDEG_RS05305 PF03780 Asp23 family, cell envelope-related function SDEG_RS05310 PF05532 CsbD-like SDEG_RS05315 PF03780 Asp23 family, cell envelope-related function SDEG_RS05330 PF04226 Transglycosylase associated protein SDEG_RS05335 PF13361 UvrD-like helicase C-terminal domain SDEG_RS05335 PF00580 UvrD/REP helicase N-terminal domain SDEG_RS05340 PF01235 Sodium:alanine symporter family SDEG_RS05345 PF01545 Cation efflux family SDEG_RS05345 PF16916 Dimerisation domain of Zinc Transporter SDEG_RS05355 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDEG_RS05360 PF00005 ABC transporter SDEG_RS05365 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS05370 PF03831 PhnA domain SDEG_RS05370 PF08274 PhnA Zinc-Ribbon SDEG_RS05375 PF01380 SIS domain SDEG_RS05380 PF10502 Signal peptidase, peptidase S26 SDEG_RS05385 PF00224 Pyruvate kinase, barrel domain SDEG_RS05385 PF02887 Pyruvate kinase, alpha/beta domain SDEG_RS05390 PF00365 Phosphofructokinase SDEG_RS05395 PF02811 PHP domain SDEG_RS05395 PF14579 Helix-hairpin-helix motif SDEG_RS05395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDEG_RS05395 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDEG_RS05395 PF01336 OB-fold nucleic acid binding domain SDEG_RS05400 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS05405 PF00005 ABC transporter SDEG_RS05415 PF09335 SNARE associated Golgi protein SDEG_RS05430 PF05532 CsbD-like SDEG_RS05440 PF05257 CHAP domain SDEG_RS05440 PF08460 Bacterial SH3 domain SDEG_RS05440 PF01520 N-acetylmuramoyl-L-alanine amidase SDEG_RS05450 PF05105 Bacteriophage holin family SDEG_RS05630 PF03837 RecT family SDEG_RS05730 PF00575 S1 RNA binding domain SDEG_RS05750 PF01063 Amino-transferase class IV SDEG_RS05760 PF03989 DNA gyrase C-terminal domain, beta-propeller SDEG_RS05760 PF00521 DNA gyrase/topoisomerase IV, subunit A SDEG_RS05770 PF00986 DNA gyrase B subunit, carboxyl terminus SDEG_RS05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS05770 PF01751 Toprim domain SDEG_RS05770 PF00204 DNA gyrase B SDEG_RS05775 PF02660 Glycerol-3-phosphate acyltransferase SDEG_RS05780 PF01979 Amidohydrolase family SDEG_RS05785 PF03167 Uracil DNA glycosylase superfamily SDEG_RS05790 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS05795 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDEG_RS05800 PF01425 Amidase SDEG_RS05805 PF00665 Integrase core domain SDEG_RS05805 PF13276 HTH-like domain SDEG_RS05805 PF13333 Integrase core domain SDEG_RS05820 PF00156 Phosphoribosyl transferase domain SDEG_RS05825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDEG_RS05835 PF03466 LysR substrate binding domain SDEG_RS05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDEG_RS05845 PF01048 Phosphorylase superfamily SDEG_RS05850 PF01048 Phosphorylase superfamily SDEG_RS05855 PF03960 ArsC family SDEG_RS05860 PF01676 Metalloenzyme superfamily SDEG_RS05865 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SDEG_RS05870 PF01926 50S ribosome-binding GTPase SDEG_RS05870 PF10396 GTP-binding protein TrmE N-terminus SDEG_RS05870 PF12631 MnmE helical domain SDEG_RS05875 PF01546 Peptidase family M20/M25/M40 SDEG_RS05880 PF00881 Nitroreductase family SDEG_RS05885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDEG_RS05885 PF00205 Thiamine pyrophosphate enzyme, central domain SDEG_RS05885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDEG_RS05890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDEG_RS05890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDEG_RS05890 PF00205 Thiamine pyrophosphate enzyme, central domain SDEG_RS05905 PF02151 UvrB/uvrC motif SDEG_RS05905 PF01541 GIY-YIG catalytic domain SDEG_RS05905 PF08459 UvrC Helix-hairpin-helix N-terminal SDEG_RS05915 PF00171 Aldehyde dehydrogenase family SDEG_RS05920 PF13419 Haloacid dehalogenase-like hydrolase SDEG_RS05930 PF03773 Predicted permease SDEG_RS05955 PF12833 Helix-turn-helix domain SDEG_RS05955 PF00072 Response regulator receiver domain SDEG_RS05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS05960 PF06580 Histidine kinase SDEG_RS05965 PF03613 PTS system mannose/fructose/sorbose family IID component SDEG_RS05970 PF03609 PTS system sorbose-specific iic component SDEG_RS05975 PF03830 PTS system sorbose subfamily IIB component SDEG_RS05985 PF03601 Conserved hypothetical protein 698 SDEG_RS06000 PF01721 Class II bacteriocin SDEG_RS06005 PF01966 HD domain SDEG_RS06010 PF01641 SelR domain SDEG_RS06015 PF00679 Elongation factor G C-terminus SDEG_RS06015 PF03144 Elongation factor Tu domain 2 SDEG_RS06015 PF00009 Elongation factor Tu GTP binding domain SDEG_RS06015 PF06421 GTP-binding protein LepA C-terminus SDEG_RS06015 PF14492 Elongation Factor G, domain II SDEG_RS06020 PF00334 Nucleoside diphosphate kinase SDEG_RS06025 PF09711 CRISPR-associated protein (Cas_Csn2) SDEG_RS06030 PF09827 CRISPR associated protein Cas2 SDEG_RS06035 PF01867 CRISPR associated protein Cas1 SDEG_RS06040 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 SDEG_RS06040 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 SDEG_RS06040 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 SDEG_RS06040 PF13395 HNH endonuclease SDEG_RS06050 PF13344 Haloacid dehalogenase-like hydrolase SDEG_RS06060 PF04055 Radical SAM superfamily SDEG_RS06060 PF06969 HemN C-terminal domain SDEG_RS06070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDEG_RS06070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDEG_RS06070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDEG_RS06070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDEG_RS06080 PF02457 DisA bacterial checkpoint controller nucleotide-binding SDEG_RS06085 PF08353 Domain of unknown function (DUF1727) SDEG_RS06085 PF08245 Mur ligase middle domain SDEG_RS06090 PF07685 CobB/CobQ-like glutamine amidotransferase domain SDEG_RS06095 PF10437 Bacterial lipoate protein ligase C-terminus SDEG_RS06095 PF03099 Biotin/lipoate A/B protein ligase family SDEG_RS06105 PF03551 Transcriptional regulator PadR-like family SDEG_RS06105 PF10400 Virulence activator alpha C-term SDEG_RS06110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS06110 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS06120 PF02817 e3 binding domain SDEG_RS06120 PF00364 Biotin-requiring enzyme SDEG_RS06120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SDEG_RS06125 PF00364 Biotin-requiring enzyme SDEG_RS06125 PF02779 Transketolase, pyrimidine binding domain SDEG_RS06125 PF02780 Transketolase, C-terminal domain SDEG_RS06130 PF00676 Dehydrogenase E1 component SDEG_RS06135 PF16326 ABC transporter C-terminal domain SDEG_RS06135 PF00005 ABC transporter SDEG_RS06135 PF12848 ABC transporter SDEG_RS06145 PF00756 Putative esterase SDEG_RS06150 PF17770 Ribonuclease J C-terminal domain SDEG_RS06150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SDEG_RS06150 PF00753 Metallo-beta-lactamase superfamily SDEG_RS06155 PF00005 ABC transporter SDEG_RS06155 PF12558 ATP-binding cassette cobalt transporter SDEG_RS06185 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SDEG_RS06205 PF05670 NFACT protein RNA binding domain SDEG_RS06215 PF01594 AI-2E family transporter SDEG_RS06220 PF00293 NUDIX domain SDEG_RS06235 PF16363 GDP-mannose 4,6 dehydratase SDEG_RS06240 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SDEG_RS06245 PF00483 Nucleotidyl transferase SDEG_RS06250 PF01266 FAD dependent oxidoreductase SDEG_RS06255 PF02535 ZIP Zinc transporter SDEG_RS06260 PF01784 NIF3 (NGG1p interacting factor 3) SDEG_RS06265 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SDEG_RS06270 PF00730 HhH-GPD superfamily base excision DNA repair protein SDEG_RS06270 PF10576 Iron-sulfur binding domain of endonuclease III SDEG_RS06270 PF00633 Helix-hairpin-helix motif SDEG_RS06280 PF00156 Phosphoribosyl transferase domain SDEG_RS06285 PF02272 DHHA1 domain SDEG_RS06285 PF17768 RecJ OB domain SDEG_RS06285 PF01368 DHH family SDEG_RS06285 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SDEG_RS06290 PF00106 short chain dehydrogenase SDEG_RS06295 PF12706 Beta-lactamase superfamily domain SDEG_RS06295 PF00753 Metallo-beta-lactamase superfamily SDEG_RS06305 PF01926 50S ribosome-binding GTPase SDEG_RS06305 PF13167 GTP-binding GTPase N-terminal SDEG_RS06305 PF16360 GTP-binding GTPase Middle Region SDEG_RS06320 PF13417 Glutathione S-transferase, N-terminal domain SDEG_RS06330 PF17773 UPF0176 acylphosphatase like domain SDEG_RS06330 PF00581 Rhodanese-like domain SDEG_RS06330 PF12368 Rhodanase C-terminal SDEG_RS06340 PF03358 NADPH-dependent FMN reductase SDEG_RS06345 PF00343 Carbohydrate phosphorylase SDEG_RS06350 PF02446 4-alpha-glucanotransferase SDEG_RS06355 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS06355 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDEG_RS06360 PF13936 Helix-turn-helix domain SDEG_RS06365 PF13416 Bacterial extracellular solute-binding protein SDEG_RS06370 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS06375 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS06380 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS06390 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS06400 PF02903 Alpha amylase, N-terminal ig-like domain SDEG_RS06400 PF00128 Alpha amylase, catalytic domain SDEG_RS06405 PF13416 Bacterial extracellular solute-binding protein SDEG_RS06410 PF04914 DltD protein SDEG_RS06415 PF00550 Phosphopantetheine attachment site SDEG_RS06420 PF03062 MBOAT, membrane-bound O-acyltransferase family SDEG_RS06425 PF00501 AMP-binding enzyme SDEG_RS06425 PF13193 AMP-binding enzyme C-terminal domain SDEG_RS06435 PF17757 UvrB interaction domain SDEG_RS06435 PF12344 Ultra-violet resistance protein B SDEG_RS06435 PF02151 UvrB/uvrC motif SDEG_RS06435 PF04851 Type III restriction enzyme, res subunit SDEG_RS06435 PF00271 Helicase conserved C-terminal domain SDEG_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS06445 PF00005 ABC transporter SDEG_RS06460 PF09269 Domain of unknown function (DUF1967) SDEG_RS06460 PF01018 GTP1/OBG SDEG_RS06460 PF01926 50S ribosome-binding GTPase SDEG_RS06465 PF02073 Thermophilic metalloprotease (M29) SDEG_RS06475 PF00849 RNA pseudouridylate synthase SDEG_RS06475 PF01479 S4 domain SDEG_RS06485 PF07690 Major Facilitator Superfamily SDEG_RS06490 PF08903 Domain of unknown function (DUF1846) SDEG_RS06495 PF03649 Uncharacterised protein family (UPF0014) SDEG_RS06500 PF00005 ABC transporter SDEG_RS06515 PF03180 NLPA lipoprotein SDEG_RS06530 PF12848 ABC transporter SDEG_RS06530 PF16326 ABC transporter C-terminal domain SDEG_RS06530 PF00005 ABC transporter SDEG_RS06535 PF12848 ABC transporter SDEG_RS06535 PF00005 ABC transporter SDEG_RS06540 PF00005 ABC transporter SDEG_RS06565 PF13683 Integrase core domain SDEG_RS06565 PF01610 Transposase SDEG_RS06580 PF01381 Helix-turn-helix SDEG_RS06585 PF01443 Viral (Superfamily 1) RNA helicase SDEG_RS06585 PF03389 MobA/MobL family SDEG_RS06585 PF17841 BID domain of Bartonella effector protein (Bep) SDEG_RS06615 PF01695 IstB-like ATP binding protein SDEG_RS06630 PF01938 TRAM domain SDEG_RS06630 PF05958 tRNA (Uracil-5-)-methyltransferase SDEG_RS06635 PF03816 Cell envelope-related transcriptional attenuator domain SDEG_RS06640 PF01202 Shikimate kinase SDEG_RS06645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDEG_RS06655 PF00557 Metallopeptidase family M24 SDEG_RS06660 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS06660 PF07085 DRTGG domain SDEG_RS06660 PF00571 CBS domain SDEG_RS06660 PF03061 Thioesterase superfamily SDEG_RS06670 PF01378 B domain SDEG_RS06670 PF00746 LPXTG cell wall anchor motif SDEG_RS06670 PF17573 GA-like domain SDEG_RS06675 PF00933 Glycosyl hydrolase family 3 N terminal domain SDEG_RS06685 PF00106 short chain dehydrogenase SDEG_RS06690 PF03786 D-mannonate dehydratase (UxuA) SDEG_RS06695 PF02614 Glucuronate isomerase SDEG_RS06700 PF01081 KDPG and KHG aldolase SDEG_RS06705 PF07729 FCD domain SDEG_RS06705 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS06710 PF00703 Glycosyl hydrolases family 2 SDEG_RS06710 PF02837 Glycosyl hydrolases family 2, sugar binding domain SDEG_RS06710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SDEG_RS06725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDEG_RS06730 PF02772 S-adenosylmethionine synthetase, central domain SDEG_RS06730 PF00438 S-adenosylmethionine synthetase, N-terminal domain SDEG_RS06730 PF02773 S-adenosylmethionine synthetase, C-terminal domain SDEG_RS06740 PF03099 Biotin/lipoate A/B protein ligase family SDEG_RS06740 PF08279 HTH domain SDEG_RS06740 PF02237 Biotin protein ligase C terminal domain SDEG_RS06745 PF12169 DNA polymerase III subunits gamma and tau domain III SDEG_RS06750 PF13185 GAF domain SDEG_RS06765 PF00485 Phosphoribulokinase / Uridine kinase family SDEG_RS06770 PF00270 DEAD/DEAH box helicase SDEG_RS06770 PF00271 Helicase conserved C-terminal domain SDEG_RS06780 PF00665 Integrase core domain SDEG_RS06780 PF13276 HTH-like domain SDEG_RS06780 PF13333 Integrase core domain SDEG_RS06785 PF00665 Integrase core domain SDEG_RS06785 PF13333 Integrase core domain SDEG_RS06785 PF13276 HTH-like domain SDEG_RS06800 PF00232 Glycosyl hydrolase family 1 SDEG_RS06805 PF00300 Histidine phosphatase superfamily (branch 1) SDEG_RS06810 PF00300 Histidine phosphatase superfamily (branch 1) SDEG_RS06815 PF00300 Histidine phosphatase superfamily (branch 1) SDEG_RS06830 PF12464 Maltose acetyltransferase SDEG_RS06830 PF14602 Hexapeptide repeat of succinyl-transferase SDEG_RS06830 PF00132 Bacterial transferase hexapeptide (six repeats) SDEG_RS06845 PF02378 Phosphotransferase system, EIIC SDEG_RS06855 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SDEG_RS06860 PF08279 HTH domain SDEG_RS06860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS06860 PF00874 PRD domain SDEG_RS06860 PF05043 Mga helix-turn-helix domain SDEG_RS06865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS06885 PF00872 Transposase, Mutator family SDEG_RS06890 PF04193 PQ loop repeat SDEG_RS06895 PF00232 Glycosyl hydrolase family 1 SDEG_RS06900 PF02608 ABC transporter substrate-binding protein PnrA-like SDEG_RS06920 PF00232 Glycosyl hydrolase family 1 SDEG_RS06925 PF02311 AraC-like ligand binding domain SDEG_RS06925 PF12833 Helix-turn-helix domain SDEG_RS06930 PF00367 phosphotransferase system, EIIB SDEG_RS06930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDEG_RS06930 PF02378 Phosphotransferase system, EIIC SDEG_RS06935 PF03123 CAT RNA binding domain SDEG_RS06935 PF00874 PRD domain SDEG_RS06945 PF13276 HTH-like domain SDEG_RS06945 PF13333 Integrase core domain SDEG_RS06945 PF00665 Integrase core domain SDEG_RS06950 PF01522 Polysaccharide deacetylase SDEG_RS06950 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SDEG_RS06955 PF00171 Aldehyde dehydrogenase family SDEG_RS06960 PF05524 PEP-utilising enzyme, N-terminal SDEG_RS06960 PF00391 PEP-utilising enzyme, mobile domain SDEG_RS06960 PF02896 PEP-utilising enzyme, TIM barrel domain SDEG_RS06965 PF00381 PTS HPr component phosphorylation site SDEG_RS06970 PF00462 Glutaredoxin SDEG_RS06975 PF08343 Ribonucleotide reductase N-terminal SDEG_RS06975 PF00317 Ribonucleotide reductase, all-alpha domain SDEG_RS06975 PF02867 Ribonucleotide reductase, barrel domain SDEG_RS06980 PF00268 Ribonucleotide reductase, small chain SDEG_RS07000 PF01381 Helix-turn-helix SDEG_RS07010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDEG_RS07010 PF01411 tRNA synthetases class II (A) SDEG_RS07010 PF02272 DHHA1 domain SDEG_RS07020 PF13145 PPIC-type PPIASE domain SDEG_RS07025 PF01596 O-methyltransferase SDEG_RS07030 PF07690 Major Facilitator Superfamily SDEG_RS07045 PF03358 NADPH-dependent FMN reductase SDEG_RS07050 PF08439 Oligopeptidase F SDEG_RS07050 PF01432 Peptidase family M3 SDEG_RS07070 PF00849 RNA pseudouridylate synthase SDEG_RS07070 PF01479 S4 domain SDEG_RS07075 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SDEG_RS07080 PF02547 Queuosine biosynthesis protein SDEG_RS07095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SDEG_RS07095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SDEG_RS07105 PF00753 Metallo-beta-lactamase superfamily SDEG_RS07105 PF13567 Domain of unknown function (DUF4131) SDEG_RS07105 PF03772 Competence protein SDEG_RS07110 PF10531 SLBB domain SDEG_RS07115 PF01553 Acyltransferase SDEG_RS07120 PF05175 Methyltransferase small domain SDEG_RS07125 PF01541 GIY-YIG catalytic domain SDEG_RS07130 PF02705 K+ potassium transporter SDEG_RS07135 PF00271 Helicase conserved C-terminal domain SDEG_RS07135 PF00270 DEAD/DEAH box helicase SDEG_RS07140 PF03180 NLPA lipoprotein SDEG_RS07145 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS07150 PF00005 ABC transporter SDEG_RS07150 PF09383 NIL domain SDEG_RS07155 PF08000 Bacterial PH domain SDEG_RS07160 PF16658 Class II release factor RF3, C-terminal domain SDEG_RS07160 PF00009 Elongation factor Tu GTP binding domain SDEG_RS07160 PF03144 Elongation factor Tu domain 2 SDEG_RS07170 PF08245 Mur ligase middle domain SDEG_RS07170 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS07170 PF01225 Mur ligase family, catalytic domain SDEG_RS07175 PF01820 D-ala D-ala ligase N-terminus SDEG_RS07175 PF07478 D-ala D-ala ligase C-terminus SDEG_RS07180 PF13662 Toprim domain SDEG_RS07180 PF02132 RecR protein SDEG_RS07185 PF00905 Penicillin binding protein transpeptidase domain SDEG_RS07185 PF03717 Penicillin-binding Protein dimerisation domain SDEG_RS07190 PF01226 Formate/nitrite transporter SDEG_RS07200 PF02829 3H domain SDEG_RS07200 PF08279 HTH domain SDEG_RS07205 PF00300 Histidine phosphatase superfamily (branch 1) SDEG_RS07210 PF13936 Helix-turn-helix domain SDEG_RS07215 PF01180 Dihydroorotate dehydrogenase SDEG_RS07235 PF00216 Bacterial DNA-binding protein SDEG_RS07245 PF13472 GDSL-like Lipase/Acylhydrolase family SDEG_RS07250 PF02645 Uncharacterised protein, DegV family COG1307 SDEG_RS07260 PF13476 AAA domain SDEG_RS07265 PF02863 Arginine repressor, C-terminal domain SDEG_RS07265 PF01316 Arginine repressor, DNA binding domain SDEG_RS07270 PF01728 FtsJ-like methyltransferase SDEG_RS07270 PF01479 S4 domain SDEG_RS07275 PF00348 Polyprenyl synthetase SDEG_RS07280 PF02609 Exonuclease VII small subunit SDEG_RS07285 PF02601 Exonuclease VII, large subunit SDEG_RS07285 PF13742 OB-fold nucleic acid binding domain SDEG_RS07290 PF01256 Carbohydrate kinase SDEG_RS07295 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SDEG_RS07295 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SDEG_RS07300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDEG_RS07300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDEG_RS07300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDEG_RS07300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDEG_RS07305 PF03441 FAD binding domain of DNA photolyase SDEG_RS07305 PF00875 DNA photolyase SDEG_RS07315 PF07670 Nucleoside recognition SDEG_RS07315 PF02421 Ferrous iron transport protein B SDEG_RS07315 PF17910 FeoB cytosolic helical domain SDEG_RS07315 PF07664 Ferrous iron transport protein B C terminus SDEG_RS07325 PF00005 ABC transporter SDEG_RS07330 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS07335 PF08796 Protein of unknown function (DUF1797) SDEG_RS07340 PF10431 C-terminal, D2-small domain, of ClpB protein SDEG_RS07340 PF17871 AAA lid domain SDEG_RS07340 PF07724 AAA domain (Cdc48 subfamily) SDEG_RS07340 PF00004 ATPase family associated with various cellular activities (AAA) SDEG_RS07345 PF00293 NUDIX domain SDEG_RS07355 PF00133 tRNA synthetases class I (I, L, M and V) SDEG_RS07355 PF08264 Anticodon-binding domain of tRNA SDEG_RS07360 PF05103 DivIVA protein SDEG_RS07375 PF04472 Cell division protein SepF SDEG_RS07380 PF01168 Alanine racemase, N-terminal domain SDEG_RS07385 PF12327 FtsZ family, C-terminal domain SDEG_RS07385 PF00091 Tubulin/FtsZ family, GTPase domain SDEG_RS07390 PF02491 SHS2 domain inserted in FTSA SDEG_RS07390 PF11983 Membrane-attachment and polymerisation-promoting switch SDEG_RS07395 PF08478 POTRA domain, FtsQ-type SDEG_RS07400 PF08478 POTRA domain, FtsQ-type SDEG_RS07405 PF03033 Glycosyltransferase family 28 N-terminal domain SDEG_RS07405 PF04101 Glycosyltransferase family 28 C-terminal domain SDEG_RS07410 PF08245 Mur ligase middle domain SDEG_RS07410 PF02875 Mur ligase family, glutamate ligase domain SDEG_RS07425 PF03144 Elongation factor Tu domain 2 SDEG_RS07425 PF00679 Elongation factor G C-terminus SDEG_RS07425 PF14492 Elongation Factor G, domain II SDEG_RS07425 PF00009 Elongation factor Tu GTP binding domain SDEG_RS07430 PF00581 Rhodanese-like domain SDEG_RS07435 PF00480 ROK family SDEG_RS07445 PF00210 Ferritin-like domain SDEG_RS07455 PF00196 Bacterial regulatory proteins, luxR family SDEG_RS07455 PF00072 Response regulator receiver domain SDEG_RS07460 PF07730 Histidine kinase SDEG_RS07470 PF00005 ABC transporter SDEG_RS07475 PF00005 ABC transporter SDEG_RS07475 PF00664 ABC transporter transmembrane region SDEG_RS07490 PF04055 Radical SAM superfamily SDEG_RS07495 PF06265 Protein of unknown function (DUF1027) SDEG_RS07510 PF13407 Periplasmic binding protein domain SDEG_RS07515 PF00005 ABC transporter SDEG_RS07520 PF05025 RbsD / FucU transport protein family SDEG_RS07525 PF00294 pfkB family carbohydrate kinase SDEG_RS07530 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS07535 PF05362 Lon protease (S16) C-terminal proteolytic domain SDEG_RS07535 PF13180 PDZ domain SDEG_RS07540 PF01467 Cytidylyltransferase-like SDEG_RS07550 PF03590 Aspartate-ammonia ligase SDEG_RS07555 PF00696 Amino acid kinase family SDEG_RS07565 PF01546 Peptidase family M20/M25/M40 SDEG_RS07570 PF03606 C4-dicarboxylate anaerobic carrier SDEG_RS07575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDEG_RS07575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDEG_RS07580 PF13673 Acetyltransferase (GNAT) domain SDEG_RS07590 PF13545 Crp-like helix-turn-helix domain SDEG_RS07590 PF00027 Cyclic nucleotide-binding domain SDEG_RS07595 PF02863 Arginine repressor, C-terminal domain SDEG_RS07595 PF01316 Arginine repressor, DNA binding domain SDEG_RS07610 PF00672 HAMP domain SDEG_RS07610 PF06580 Histidine kinase SDEG_RS07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS07610 PF02743 Cache domain SDEG_RS07615 PF12833 Helix-turn-helix domain SDEG_RS07615 PF00072 Response regulator receiver domain SDEG_RS07620 PF01641 SelR domain SDEG_RS07620 PF01625 Peptide methionine sulfoxide reductase SDEG_RS07625 PF08534 Redoxin SDEG_RS07630 PF02683 Cytochrome C biogenesis protein transmembrane region SDEG_RS07640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDEG_RS07640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDEG_RS07650 PF08264 Anticodon-binding domain of tRNA SDEG_RS07650 PF10458 Valyl tRNA synthetase tRNA binding arm SDEG_RS07650 PF00133 tRNA synthetases class I (I, L, M and V) SDEG_RS07685 PF01554 MatE SDEG_RS07695 PF00793 DAHP synthetase I family SDEG_RS07695 PF01817 Chorismate mutase type II SDEG_RS07700 PF01761 3-dehydroquinate synthase SDEG_RS07720 PF08501 Shikimate dehydrogenase substrate binding domain SDEG_RS07720 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SDEG_RS07725 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SDEG_RS07725 PF16355 Domain of unknown function (DUF4982) SDEG_RS07725 PF02837 Glycosyl hydrolases family 2, sugar binding domain SDEG_RS07725 PF00703 Glycosyl hydrolases family 2 SDEG_RS07725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SDEG_RS07730 PF12833 Helix-turn-helix domain SDEG_RS07730 PF00072 Response regulator receiver domain SDEG_RS07735 PF00672 HAMP domain SDEG_RS07735 PF02743 Cache domain SDEG_RS07735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS07735 PF06580 Histidine kinase SDEG_RS07745 PF12010 Domain of unknown function (DUF3502) SDEG_RS07750 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS07755 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS07760 PF00480 ROK family SDEG_RS07775 PF00232 Glycosyl hydrolase family 1 SDEG_RS07780 PF02838 Glycosyl hydrolase family 20, domain 2 SDEG_RS07780 PF07555 beta-N-acetylglucosaminidase SDEG_RS07785 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS07795 PF07748 Glycosyl hydrolases family 38 C-terminal domain SDEG_RS07795 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SDEG_RS07795 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SDEG_RS07795 PF09261 Alpha mannosidase middle domain SDEG_RS07795 PF01074 Glycosyl hydrolases family 38 N-terminal domain SDEG_RS07805 PF00583 Acetyltransferase (GNAT) family SDEG_RS07810 PF00296 Luciferase-like monooxygenase SDEG_RS07815 PF00501 AMP-binding enzyme SDEG_RS07815 PF13193 AMP-binding enzyme C-terminal domain SDEG_RS07820 PF03060 Nitronate monooxygenase SDEG_RS07825 PF00108 Thiolase, N-terminal domain SDEG_RS07825 PF02803 Thiolase, C-terminal domain SDEG_RS07830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SDEG_RS07830 PF16113 Enoyl-CoA hydratase/isomerase SDEG_RS07830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SDEG_RS07840 PF00005 ABC transporter SDEG_RS07845 PF05958 tRNA (Uracil-5-)-methyltransferase SDEG_RS07845 PF01938 TRAM domain SDEG_RS07995 PF04466 Phage terminase large subunit SDEG_RS07995 PF17288 Terminase RNAseH like domain SDEG_RS08055 PF05866 Endodeoxyribonuclease RusA SDEG_RS08065 PF00436 Single-strand binding protein family SDEG_RS08130 PF02899 Phage integrase, N-terminal SAM-like domain SDEG_RS08130 PF00589 Phage integrase family SDEG_RS08135 PF02631 RecX family SDEG_RS08140 PF04167 Protein of unknown function (DUF402) SDEG_RS08205 PF13936 Helix-turn-helix domain SDEG_RS08210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SDEG_RS08210 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SDEG_RS08220 PF04851 Type III restriction enzyme, res subunit SDEG_RS08220 PF00271 Helicase conserved C-terminal domain SDEG_RS08225 PF09186 Domain of unknown function (DUF1949) SDEG_RS08225 PF01205 Uncharacterized protein family UPF0029 SDEG_RS08230 PF00291 Pyridoxal-phosphate dependent enzyme SDEG_RS08235 PF00575 S1 RNA binding domain SDEG_RS08240 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDEG_RS08245 PF00072 Response regulator receiver domain SDEG_RS08245 PF00196 Bacterial regulatory proteins, luxR family SDEG_RS08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDEG_RS08250 PF07730 Histidine kinase SDEG_RS08250 PF00672 HAMP domain SDEG_RS08260 PF00069 Protein kinase domain SDEG_RS08260 PF03793 PASTA domain SDEG_RS08270 PF01029 NusB family SDEG_RS08270 PF01189 16S rRNA methyltransferase RsmB/F SDEG_RS08275 PF00551 Formyl transferase SDEG_RS08275 PF02911 Formyl transferase, C-terminal domain SDEG_RS08280 PF00271 Helicase conserved C-terminal domain SDEG_RS08280 PF18074 Primosomal protein N C-terminal domain SDEG_RS08280 PF17764 3′ DNA-binding domain (3′BD) SDEG_RS08280 PF04851 Type III restriction enzyme, res subunit SDEG_RS08280 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SDEG_RS08285 PF01192 RNA polymerase Rpb6 SDEG_RS08290 PF00625 Guanylate kinase SDEG_RS08295 PF12072 Domain of unknown function (DUF3552) SDEG_RS08295 PF00013 KH domain SDEG_RS08295 PF01966 HD domain SDEG_RS08300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDEG_RS08300 PF03466 LysR substrate binding domain SDEG_RS08305 PF00108 Thiolase, N-terminal domain SDEG_RS08305 PF02803 Thiolase, C-terminal domain SDEG_RS08310 PF01144 Coenzyme A transferase SDEG_RS08315 PF01144 Coenzyme A transferase SDEG_RS08330 PF02664 S-Ribosylhomocysteinase (LuxS) SDEG_RS08335 PF18041 MapZ extracellular domain 1 SDEG_RS08335 PF18708 MapZ extracellular C-terminal domain 2 SDEG_RS08340 PF01170 Putative RNA methylase family UPF0020 SDEG_RS08340 PF02926 THUMP domain SDEG_RS08345 PF05103 DivIVA protein SDEG_RS08350 PF06908 YspA SLOG family SDEG_RS08355 PF03838 Recombination protein U SDEG_RS08360 PF00912 Transglycosylase SDEG_RS08360 PF00905 Penicillin binding protein transpeptidase domain SDEG_RS08365 PF03051 Peptidase C1-like family SDEG_RS08370 PF02540 NAD synthase SDEG_RS08375 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SDEG_RS08375 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SDEG_RS08375 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SDEG_RS08380 PF00324 Amino acid permease SDEG_RS08385 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS08395 PF00005 ABC transporter SDEG_RS08400 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS08410 PF00270 DEAD/DEAH box helicase SDEG_RS08410 PF00271 Helicase conserved C-terminal domain SDEG_RS08415 PF00953 Glycosyl transferase family 4 SDEG_RS08415 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SDEG_RS08420 PF03793 PASTA domain SDEG_RS08420 PF03717 Penicillin-binding Protein dimerisation domain SDEG_RS08420 PF00905 Penicillin binding protein transpeptidase domain SDEG_RS08430 PF01795 MraW methylase family SDEG_RS08435 PF00171 Aldehyde dehydrogenase family SDEG_RS08440 PF00696 Amino acid kinase family SDEG_RS08450 PF00005 ABC transporter SDEG_RS08460 PF02779 Transketolase, pyrimidine binding domain SDEG_RS08460 PF02780 Transketolase, C-terminal domain SDEG_RS08460 PF00456 Transketolase, thiamine diphosphate binding domain SDEG_RS08465 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDEG_RS08475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS08480 PF00230 Major intrinsic protein SDEG_RS08485 PF01266 FAD dependent oxidoreductase SDEG_RS08485 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SDEG_RS08490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDEG_RS08490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDEG_RS08495 PF03413 Peptidase propeptide and YPEB domain SDEG_RS08500 PF05979 Bacterial protein of unknown function (DUF896) SDEG_RS08505 PF02092 Glycyl-tRNA synthetase beta subunit SDEG_RS08510 PF02091 Glycyl-tRNA synthetase alpha subunit SDEG_RS08515 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SDEG_RS08520 PF00248 Aldo/keto reductase family SDEG_RS08525 PF01979 Amidohydrolase family SDEG_RS08530 PF02690 Na+/Pi-cotransporter SDEG_RS08540 PF02645 Uncharacterised protein, DegV family COG1307 SDEG_RS08555 PF03458 UPF0126 domain SDEG_RS08565 PF00294 pfkB family carbohydrate kinase SDEG_RS08570 PF02502 Ribose/Galactose Isomerase SDEG_RS08575 PF02502 Ribose/Galactose Isomerase SDEG_RS08590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS08595 PF00455 DeoR C terminal sensor domain SDEG_RS08595 PF08220 DeoR-like helix-turn-helix domain SDEG_RS08605 PF00403 Heavy-metal-associated domain SDEG_RS08610 PF03965 Penicillinase repressor SDEG_RS08640 PF04203 Sortase domain SDEG_RS08645 PF12892 Spy0128-like isopeptide containing domain SDEG_RS08655 PF17802 Prealbumin-like fold domain SDEG_RS08655 PF08341 Thioester domain SDEG_RS08660 PF06445 GyrI-like small molecule binding domain SDEG_RS08660 PF12833 Helix-turn-helix domain SDEG_RS08680 PF07859 alpha/beta hydrolase fold SDEG_RS08685 PF02033 Ribosome-binding factor A SDEG_RS08690 PF00009 Elongation factor Tu GTP binding domain SDEG_RS08690 PF11987 Translation-initiation factor 2 SDEG_RS08690 PF04760 Translation initiation factor IF-2, N-terminal region SDEG_RS08695 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SDEG_RS08700 PF04296 Protein of unknown function (DUF448) SDEG_RS08705 PF08529 NusA N-terminal domain SDEG_RS08705 PF13184 NusA-like KH domain SDEG_RS08705 PF00575 S1 RNA binding domain SDEG_RS08710 PF02576 RimP N-terminal domain SDEG_RS08710 PF17384 RimP C-terminal SH3 domain SDEG_RS08720 PF02390 Putative methyltransferase SDEG_RS08730 PF05975 Bacterial ABC transporter protein EcsB SDEG_RS08735 PF00005 ABC transporter SDEG_RS08740 PF01230 HIT domain SDEG_RS08750 PF03816 Cell envelope-related transcriptional attenuator domain SDEG_RS08755 PF13302 Acetyltransferase (GNAT) domain SDEG_RS08760 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SDEG_RS08765 PF00860 Permease family SDEG_RS08775 PF03610 PTS system fructose IIA component SDEG_RS08775 PF03830 PTS system sorbose subfamily IIB component SDEG_RS08780 PF03609 PTS system sorbose-specific iic component SDEG_RS08785 PF03613 PTS system mannose/fructose/sorbose family IID component SDEG_RS08800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDEG_RS08800 PF02403 Seryl-tRNA synthetase N-terminal domain SDEG_RS08805 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SDEG_RS08810 PF17848 Acetyl-coA carboxylase zinc finger domain SDEG_RS08810 PF01039 Carboxyl transferase domain SDEG_RS08815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDEG_RS08815 PF00289 Biotin carboxylase, N-terminal domain SDEG_RS08815 PF02785 Biotin carboxylase C-terminal domain SDEG_RS08820 PF07977 FabA-like domain SDEG_RS08825 PF00364 Biotin-requiring enzyme SDEG_RS08830 PF00109 Beta-ketoacyl synthase, N-terminal domain SDEG_RS08830 PF02801 Beta-ketoacyl synthase, C-terminal domain SDEG_RS08840 PF00698 Acyl transferase domain SDEG_RS08845 PF03060 Nitronate monooxygenase SDEG_RS08850 PF00550 Phosphopantetheine attachment site SDEG_RS08855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SDEG_RS08855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SDEG_RS08865 PF00378 Enoyl-CoA hydratase/isomerase SDEG_RS08870 PF00684 DnaJ central domain SDEG_RS08870 PF00226 DnaJ domain SDEG_RS08870 PF01556 DnaJ C terminal domain SDEG_RS08880 PF00012 Hsp70 protein SDEG_RS08885 PF01025 GrpE SDEG_RS08890 PF01628 HrcA protein C terminal domain SDEG_RS08890 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SDEG_RS08900 PF02557 D-alanyl-D-alanine carboxypeptidase SDEG_RS08905 PF00300 Histidine phosphatase superfamily (branch 1) SDEG_RS08910 PF04226 Transglycosylase associated protein SDEG_RS08915 PF00892 EamA-like transporter family SDEG_RS08925 PF13808 DDE_Tnp_1-associated SDEG_RS08925 PF01609 Transposase DDE domain SDEG_RS08930 PF02934 GatB/GatE catalytic domain SDEG_RS08930 PF02637 GatB domain SDEG_RS08935 PF01425 Amidase SDEG_RS08940 PF02686 Glu-tRNAGln amidotransferase C subunit SDEG_RS08945 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SDEG_RS08945 PF00391 PEP-utilising enzyme, mobile domain SDEG_RS08945 PF02896 PEP-utilising enzyme, TIM barrel domain SDEG_RS08950 PF03618 Kinase/pyrophosphorylase SDEG_RS08955 PF00571 CBS domain SDEG_RS08955 PF08279 HTH domain SDEG_RS08965 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS08965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS08975 PF02583 Metal-sensitive transcriptional repressor SDEG_RS08980 PF00857 Isochorismatase family SDEG_RS08985 PF06018 CodY GAF-like domain SDEG_RS08985 PF08222 CodY helix-turn-helix domain SDEG_RS08990 PF00155 Aminotransferase class I and II SDEG_RS09005 PF00710 Asparaginase, N-terminal SDEG_RS09005 PF17763 Glutaminase/Asparaginase C-terminal domain SDEG_RS09010 PF00248 Aldo/keto reductase family SDEG_RS09015 PF17191 RecG wedge domain SDEG_RS09015 PF00271 Helicase conserved C-terminal domain SDEG_RS09015 PF00270 DEAD/DEAH box helicase SDEG_RS09020 PF00005 ABC transporter SDEG_RS09035 PF00005 ABC transporter SDEG_RS09035 PF00664 ABC transporter transmembrane region SDEG_RS09040 PF00005 ABC transporter SDEG_RS09040 PF00664 ABC transporter transmembrane region SDEG_RS09045 PF00005 ABC transporter SDEG_RS09050 PF01032 FecCD transport family SDEG_RS09055 PF01497 Periplasmic binding protein SDEG_RS09070 PF01476 LysM domain SDEG_RS09070 PF05257 CHAP domain SDEG_RS09075 PF00842 Alanine racemase, C-terminal domain SDEG_RS09075 PF01168 Alanine racemase, N-terminal domain SDEG_RS09080 PF01648 4'-phosphopantetheinyl transferase superfamily SDEG_RS09085 PF07517 SecA DEAD-like domain SDEG_RS09085 PF02810 SEC-C motif SDEG_RS09085 PF07516 SecA Wing and Scaffold domain SDEG_RS09085 PF01043 SecA preprotein cross-linking domain SDEG_RS09090 PF01238 Phosphomannose isomerase type I SDEG_RS09095 PF00480 ROK family SDEG_RS09100 PF00367 phosphotransferase system, EIIB SDEG_RS09100 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDEG_RS09100 PF02378 Phosphotransferase system, EIIC SDEG_RS09105 PF00251 Glycosyl hydrolases family 32 N-terminal domain SDEG_RS09105 PF08244 Glycosyl hydrolases family 32 C terminal SDEG_RS09110 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS09115 PF01029 NusB family SDEG_RS09120 PF03780 Asp23 family, cell envelope-related function SDEG_RS09125 PF09285 Elongation factor P, C-terminal SDEG_RS09125 PF08207 Elongation factor P (EF-P) KOW-like domain SDEG_RS09125 PF01132 Elongation factor P (EF-P) OB domain SDEG_RS09130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDEG_RS09135 PF01321 Creatinase/Prolidase N-terminal domain SDEG_RS09135 PF00557 Metallopeptidase family M24 SDEG_RS09140 PF17760 UvrA interaction domain SDEG_RS09140 PF17755 UvrA DNA-binding domain SDEG_RS09140 PF00005 ABC transporter SDEG_RS09155 PF01084 Ribosomal protein S18 SDEG_RS09160 PF00436 Single-strand binding protein family SDEG_RS09165 PF01250 Ribosomal protein S6 SDEG_RS09175 PF14815 NUDIX domain SDEG_RS09175 PF00730 HhH-GPD superfamily base excision DNA repair protein SDEG_RS09180 PF00085 Thioredoxin SDEG_RS09185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDEG_RS09185 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS09190 PF00488 MutS domain V SDEG_RS09190 PF01713 Smr domain SDEG_RS09205 PF01351 Ribonuclease HII SDEG_RS09205 PF11858 Domain of unknown function (DUF3378) SDEG_RS09210 PF10502 Signal peptidase, peptidase S26 SDEG_RS09215 PF14490 Helix-hairpin-helix containing domain SDEG_RS09215 PF13538 UvrD-like helicase C-terminal domain SDEG_RS09215 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SDEG_RS09225 PF11799 impB/mucB/samB family C-terminal domain SDEG_RS09225 PF11798 IMS family HHH motif SDEG_RS09225 PF00817 impB/mucB/samB family SDEG_RS09230 PF01228 Glycine radical SDEG_RS09230 PF02901 Pyruvate formate lyase-like SDEG_RS09235 PF13673 Acetyltransferase (GNAT) domain SDEG_RS09240 PF00128 Alpha amylase, catalytic domain SDEG_RS09240 PF16657 Maltogenic Amylase, C-terminal domain SDEG_RS09240 PF02903 Alpha amylase, N-terminal ig-like domain SDEG_RS09245 PF01547 Bacterial extracellular solute-binding protein SDEG_RS09255 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09260 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDEG_RS09265 PF00356 Bacterial regulatory proteins, lacI family SDEG_RS09270 PF00144 Beta-lactamase SDEG_RS09285 PF00230 Major intrinsic protein SDEG_RS09290 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SDEG_RS09290 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SDEG_RS09290 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SDEG_RS09310 PF02575 YbaB/EbfC DNA-binding family SDEG_RS09315 PF07739 TipAS antibiotic-recognition domain SDEG_RS09315 PF13411 MerR HTH family regulatory protein SDEG_RS09320 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDEG_RS09320 PF14579 Helix-hairpin-helix motif SDEG_RS09320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDEG_RS09320 PF01336 OB-fold nucleic acid binding domain SDEG_RS09320 PF00929 Exonuclease SDEG_RS09320 PF02811 PHP domain SDEG_RS09320 PF11490 DNA polymerase III polC-type N-terminus II SDEG_RS09325 PF04394 Protein of unknown function, DUF536 SDEG_RS09325 PF08279 HTH domain SDEG_RS09340 PF00253 Ribosomal protein S14p/S29e SDEG_RS09345 PF00814 Glycoprotease family SDEG_RS09355 PF00814 Glycoprotease family SDEG_RS09360 PF07288 Protein of unknown function (DUF1447) SDEG_RS09365 PF17770 Ribonuclease J C-terminal domain SDEG_RS09365 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SDEG_RS09365 PF00753 Metallo-beta-lactamase superfamily SDEG_RS09370 PF00005 ABC transporter SDEG_RS09370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDEG_RS09375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDEG_RS09375 PF00005 ABC transporter SDEG_RS09380 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09380 PF12911 N-terminal TM domain of oligopeptide transport permease C SDEG_RS09385 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDEG_RS09395 PF00120 Glutamine synthetase, catalytic domain SDEG_RS09395 PF03951 Glutamine synthetase, beta-Grasp domain SDEG_RS09400 PF13411 MerR HTH family regulatory protein SDEG_RS09415 PF00162 Phosphoglycerate kinase SDEG_RS09420 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SDEG_RS09425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SDEG_RS09425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SDEG_RS09430 PF03144 Elongation factor Tu domain 2 SDEG_RS09430 PF00679 Elongation factor G C-terminus SDEG_RS09430 PF00009 Elongation factor Tu GTP binding domain SDEG_RS09430 PF03764 Elongation factor G, domain IV SDEG_RS09430 PF14492 Elongation Factor G, domain II SDEG_RS09435 PF00177 Ribosomal protein S7p/S5e SDEG_RS09440 PF00164 Ribosomal protein S12/S23 SDEG_RS09450 PF09182 Bacterial purine repressor, N-terminal SDEG_RS09450 PF00156 Phosphoribosyl transferase domain SDEG_RS09455 PF01966 HD domain SDEG_RS09460 PF02646 RmuC family SDEG_RS09465 PF04263 Thiamin pyrophosphokinase, catalytic domain SDEG_RS09465 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SDEG_RS09470 PF00834 Ribulose-phosphate 3 epimerase family SDEG_RS09475 PF03193 RsgA GTPase SDEG_RS09475 PF16745 RsgA N-terminal domain SDEG_RS09480 PF00398 Ribosomal RNA adenine dimethylase SDEG_RS09485 PF13331 Domain of unknown function (DUF4093) SDEG_RS09490 PF01026 TatD related DNase SDEG_RS09495 PF00857 Isochorismatase family SDEG_RS09505 PF00480 ROK family SDEG_RS09510 PF00701 Dihydrodipicolinate synthetase family SDEG_RS09525 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09540 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SDEG_RS09545 PF00468 Ribosomal protein L34 SDEG_RS09550 PF14804 Jag N-terminus SDEG_RS09550 PF01424 R3H domain SDEG_RS09555 PF02096 60Kd inner membrane protein SDEG_RS09560 PF00825 Ribonuclease P SDEG_RS09580 PF00749 tRNA synthetases class I (E and Q), catalytic domain SDEG_RS09600 PF01987 Mitochondrial biogenesis AIM24 SDEG_RS09605 PF00484 Carbonic anhydrase SDEG_RS09610 PF18073 Rubredoxin metal binding domain SDEG_RS09615 PF00692 dUTPase SDEG_RS09620 PF02677 Epoxyqueuosine reductase QueH SDEG_RS09625 PF00664 ABC transporter transmembrane region SDEG_RS09625 PF00005 ABC transporter SDEG_RS09630 PF00005 ABC transporter SDEG_RS09630 PF00664 ABC transporter transmembrane region SDEG_RS09640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SDEG_RS09640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SDEG_RS09645 PF00483 Nucleotidyl transferase SDEG_RS09655 PF01694 Rhomboid family SDEG_RS09660 PF01812 5-formyltetrahydrofolate cyclo-ligase family SDEG_RS09685 PF00342 Phosphoglucose isomerase SDEG_RS09690 PF08534 Redoxin SDEG_RS09700 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SDEG_RS09700 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SDEG_RS09710 PF14437 MafB19-like deaminase SDEG_RS09715 PF12706 Beta-lactamase superfamily domain SDEG_RS09720 PF02632 BioY family SDEG_RS09725 PF01702 Queuine tRNA-ribosyltransferase SDEG_RS09735 PF01475 Ferric uptake regulator family SDEG_RS09740 PF13380 CoA binding domain SDEG_RS09745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SDEG_RS09745 PF01367 5'-3' exonuclease, C-terminal SAM fold SDEG_RS09745 PF00476 DNA polymerase family A SDEG_RS09750 PF00528 Binding-protein-dependent transport system inner membrane component SDEG_RS09755 PF00005 ABC transporter SDEG_RS09755 PF00571 CBS domain SDEG_RS09760 PF00781 Diacylglycerol kinase catalytic domain SDEG_RS09780 PF00596 Class II Aldolase and Adducin N-terminal domain SDEG_RS09785 PF01261 Xylose isomerase-like TIM barrel SDEG_RS09790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDEG_RS09795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDEG_RS09800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDEG_RS09805 PF03611 PTS system sugar-specific permease component SDEG_RS09810 PF09334 tRNA synthetases class I (M) SDEG_RS09810 PF13603 Leucyl-tRNA synthetase, Domain 2 SDEG_RS09810 PF00133 tRNA synthetases class I (I, L, M and V) SDEG_RS09810 PF08264 Anticodon-binding domain of tRNA SDEG_RS09840 PF00005 ABC transporter SDEG_RS09840 PF00664 ABC transporter transmembrane region SDEG_RS09845 PF00899 ThiF family SDEG_RS09860 PF17440 Thiol-activated cytolysin beta sandwich domain SDEG_RS09860 PF01289 Thiol-activated cytolysin SDEG_RS09875 PF02357 Transcription termination factor nusG SDEG_RS09875 PF00467 KOW motif SDEG_RS09885 PF00905 Penicillin binding protein transpeptidase domain SDEG_RS09885 PF00912 Transglycosylase SDEG_RS09900 PF01479 S4 domain SDEG_RS09900 PF00849 RNA pseudouridylate synthase SDEG_RS09910 PF03577 Peptidase family C69 SDEG_RS09915 PF00293 NUDIX domain SDEG_RS09920 PF00118 TCP-1/cpn60 chaperonin family SDEG_RS09925 PF00166 Chaperonin 10 Kd subunit SDEG_RS09930 PF17871 AAA lid domain SDEG_RS09930 PF02861 Clp amino terminal domain, pathogenicity island component SDEG_RS09930 PF00004 ATPase family associated with various cellular activities (AAA) SDEG_RS09930 PF07724 AAA domain (Cdc48 subfamily) SDEG_RS09930 PF10431 C-terminal, D2-small domain, of ClpB protein SDEG_RS09935 PF05848 CtsR N-terminal HTH domain SDEG_RS09935 PF17727 CtsR C-terminal dimerization domain SDEG_RS09940 PF00313 'Cold-shock' DNA-binding domain SDEG_RS09965 PF00578 AhpC/TSA family SDEG_RS09970 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDEG_RS09970 PF13192 Thioredoxin domain SDEG_RS09975 PF01979 Amidohydrolase family SDEG_RS09980 PF17391 Urocanase N-terminal domain SDEG_RS09980 PF17392 Urocanase C-terminal domain SDEG_RS09980 PF01175 Urocanase Rossmann-like domain SDEG_RS09985 PF07837 Formiminotransferase domain, N-terminal subdomain SDEG_RS09985 PF02971 Formiminotransferase domain SDEG_RS09990 PF04961 Formiminotransferase-cyclodeaminase SDEG_RS09995 PF01268 Formate--tetrahydrofolate ligase SDEG_RS10005 PF13520 Amino acid permease SDEG_RS10010 PF00221 Aromatic amino acid lyase SDEG_RS10015 PF00491 Arginase family SDEG_RS10025 PF00318 Ribosomal protein S2 SDEG_RS10030 PF00889 Elongation factor TS SDEG_RS10035 PF01431 Peptidase family M13 SDEG_RS10035 PF05649 Peptidase family M13 SDEG_RS10040 PF16657 Maltogenic Amylase, C-terminal domain SDEG_RS10040 PF00128 Alpha amylase, catalytic domain SDEG_RS10045 PF00367 phosphotransferase system, EIIB SDEG_RS10045 PF02378 Phosphotransferase system, EIIC SDEG_RS10050 PF07702 UTRA domain SDEG_RS10050 PF00392 Bacterial regulatory proteins, gntR family SDEG_RS10065 PF03883 Peroxide stress protein YaaA SDEG_RS10080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDEG_RS10085 PF03477 ATP cone domain SDEG_RS10085 PF13597 Anaerobic ribonucleoside-triphosphate reductase SDEG_RS10095 PF06949 Protein of unknown function (DUF1292) SDEG_RS10100 PF03652 Holliday junction resolvase SDEG_RS10105 PF06135 IreB regulatory phosphoprotein SDEG_RS10110 PF03960 ArsC family SDEG_RS10115 PF00154 recA bacterial DNA recombination protein SDEG_RS10120 PF02464 Competence-damaged protein SDEG_RS10120 PF18146 Damage-inducible protein CinA KH domain SDEG_RS10120 PF00994 Probable molybdopterin binding domain SDEG_RS10130 PF03352 Methyladenine glycosylase SDEG_RS10130 PF13302 Acetyltransferase (GNAT) domain SDEG_RS10130 PF13673 Acetyltransferase (GNAT) domain SDEG_RS10130 PF00117 Glutamine amidotransferase class-I SDEG_RS10130 PF00958 GMP synthase C terminal domain SDEG_RS10135 PF07499 RuvA, C-terminal domain SDEG_RS10135 PF01330 RuvA N terminal domain SDEG_RS10140 PF07690 Major Facilitator Superfamily SDEG_RS10145 PF08676 MutL C terminal dimerisation domain SDEG_RS10145 PF01119 DNA mismatch repair protein, C-terminal domain SDEG_RS10150 PF00488 MutS domain V SDEG_RS10150 PF05190 MutS family domain IV SDEG_RS10150 PF05192 MutS domain III SDEG_RS10150 PF01624 MutS domain I SDEG_RS10150 PF05188 MutS domain II SDEG_RS10160 PF01316 Arginine repressor, DNA binding domain SDEG_RS10160 PF02863 Arginine repressor, C-terminal domain SDEG_RS10165 PF05746 DALR anticodon binding domain SDEG_RS10165 PF03485 Arginyl tRNA synthetase N terminal domain SDEG_RS10165 PF00750 tRNA synthetases class I (R) SDEG_RS10170 PF12848 ABC transporter SDEG_RS10170 PF00005 ABC transporter SDEG_RS10175 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDEG_RS10175 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDEG_RS10180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDEG_RS10180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDEG_RS10185 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDEG_RS10185 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDEG_RS10190 PF00152 tRNA synthetases class II (D, K and N) SDEG_RS10190 PF01336 OB-fold nucleic acid binding domain SDEG_RS10190 PF02938 GAD domain SDEG_RS10195 PF03129 Anticodon binding domain SDEG_RS10195 PF13393 Histidyl-tRNA synthetase SDEG_RS10200 PF01783 Ribosomal L32p protein family SDEG_RS10205 PF00471 Ribosomal protein L33 SDEG_RS10215 PF01022 Bacterial regulatory protein, arsR family SDEG_RS10395 PF00589 Phage integrase family SDEG_RS10395 PF14659 Phage integrase, N-terminal SAM-like domain SDEG_RS10400 PF00163 Ribosomal protein S4/S9 N-terminal domain SDEG_RS10400 PF01479 S4 domain SDEG_RS10405 PF01381 Helix-turn-helix SDEG_RS10405 PF00145 C-5 cytosine-specific DNA methylase SDEG_RS10415 PF00772 DnaB-like helicase N terminal domain SDEG_RS10415 PF03796 DnaB-like helicase C terminal domain SDEG_RS10420 PF01281 Ribosomal protein L9, N-terminal domain SDEG_RS10420 PF03948 Ribosomal protein L9, C-terminal domain SDEG_RS10425 PF01368 DHH family SDEG_RS10425 PF02272 DHHA1 domain SDEG_RS10430 PF13932 GidA associated domain SDEG_RS10430 PF01134 Glucose inhibited division protein A SDEG_RS10440 PF01914 MarC family integral membrane protein SDEG_RS10450 PF03315 Serine dehydratase beta chain SDEG_RS10450 PF01842 ACT domain SDEG_RS10455 PF03313 Serine dehydratase alpha chain SDEG_RS10460 PF13419 Haloacid dehalogenase-like hydrolase SDEG_RS10465 PF06737 Transglycosylase-like domain SDEG_RS10470 PF02361 Cobalt transport protein SDEG_RS10475 PF00005 ABC transporter SDEG_RS10480 PF00005 ABC transporter SDEG_RS10485 PF01066 CDP-alcohol phosphatidyltransferase SDEG_RS10495 PF00675 Insulinase (Peptidase family M16) SDEG_RS10495 PF05193 Peptidase M16 inactive domain SDEG_RS10510 PF02463 RecF/RecN/SMC N terminal domain SDEG_RS10515 PF06800 Sugar transport protein SDEG_RS10520 PF00571 CBS domain SDEG_RS10520 PF00478 IMP dehydrogenase / GMP reductase domain SDEG_RS10525 PF00579 tRNA synthetases class I (W and Y) SDEG_RS10530 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SDEG_RS10530 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SDEG_RS10535 PF12848 ABC transporter SDEG_RS10535 PF00005 ABC transporter SDEG_RS10565 PF02590 Predicted SPOUT methyltransferase SDEG_RS10570 PF13180 PDZ domain SDEG_RS10575 PF02195 ParB-like nuclease domain SDEG_RS10575 PF17762 HTH domain found in ParB protein SDEG_RS10595 PF01791 DeoC/LacD family aldolase