SEQ_RS00005 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SEQ_RS00010 SM00480 DNA polymerase III beta subunit SEQ_RS00020 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS00035 SM00487 DEAD-like helicases superfamily SEQ_RS00035 SM00490 helicase superfamily c-terminal domain SEQ_RS00035 SM00982 SEQ_RS00035 SEQ_RS00035 SM01058 CarD-like/TRCF domain SEQ_RS00045 SM00363 S4 RNA-binding domain SEQ_RS00060 SM00977 TilS substrate C-terminal domain SEQ_RS00070 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00200 SM01400 SEQ_RS00200 SEQ_RS00225 SM01211 SEQ_RS00225 SEQ_RS00245 SM00798 AICARFT/IMPCHase bienzyme SEQ_RS00245 SM00851 MGS-like domain SEQ_RS00255 SM01209 SEQ_RS00255 SEQ_RS00255 SM01210 SEQ_RS00255 SEQ_RS00260 SM01001 AIR carboxylase SEQ_RS00275 SM00998 Adenylosuccinate lyase C-terminus SEQ_RS00285 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00290 SM00226 Low molecular weight phosphatase family SEQ_RS00295 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SEQ_RS00310 SM00829 Enoylreductase SEQ_RS00315 SM00829 Enoylreductase SEQ_RS00320 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00335 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS00350 SM01403 SEQ_RS00350 SEQ_RS00370 SM01382 SEQ_RS00370 SEQ_RS00370 SM01383 SEQ_RS00370 SEQ_RS00385 SM00322 K homology RNA-binding domain SEQ_RS00405 SM01374 SEQ_RS00405 SEQ_RS00410 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SEQ_RS00465 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS00480 SM00662 RNA polymerases D SEQ_RS00605 SM00347 helix_turn_helix multiple antibiotic resistance protein SEQ_RS00610 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00635 SM00663 RNA polymerase I subunit A N-terminus SEQ_RS00660 SM00382 ATPases associated with a variety of cellular activities SEQ_RS00755 SM00861 Transketolase, pyrimidine binding domain SEQ_RS00800 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS00915 SM00470 ParB-like nuclease domain SEQ_RS01045 SM00047 Lysozyme subfamily 2 SEQ_RS01045 SM00287 Bacterial SH3 domain homologues SEQ_RS01080 SM00357 Cold shock protein domain SEQ_RS01090 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01090 SM01086 C-terminal, D2-small domain, of ClpB protein SEQ_RS01135 SM00883 Chaperonin 10 Kd subunit SEQ_RS01175 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01205 SM00460 Transglutaminase/protease-like homologues SEQ_RS01225 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SEQ_RS01225 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SEQ_RS01285 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SEQ_RS01295 SM01007 Class II Aldolase and Adducin N-terminal domain SEQ_RS01315 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01325 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SEQ_RS01325 SM00474 3'-5' exonuclease SEQ_RS01325 SM00475 5'-3' exonuclease SEQ_RS01325 SM00482 DNA polymerase A domain SEQ_RS01330 SM00881 CoA binding domain SEQ_RS01345 SM00776 SEQ_RS01345 SEQ_RS01385 SM00849 Metallo-beta-lactamase superfamily SEQ_RS01410 SM00984 UDP binding domain SEQ_RS01505 SM00347 helix_turn_helix multiple antibiotic resistance protein SEQ_RS01510 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01515 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01530 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01540 SM00947 Carbonic anhydrase SEQ_RS01565 SM00448 cheY-homologous receiver domain SEQ_RS01565 SM00850 LytTr DNA-binding domain SEQ_RS01580 SM00393 Putative single-stranded nucleic acids-binding domain SEQ_RS01580 SM01245 SEQ_RS01580 SEQ_RS01675 SM01130 SEQ_RS01675 SEQ_RS01700 SM00493 SEQ_RS01700 SEQ_RS01705 SM00650 Ribosomal RNA adenine dimethylases SEQ_RS01720 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SEQ_RS01755 SM00838 Elongation factor G C-terminus SEQ_RS01755 SM00889 Elongation factor G, domain IV SEQ_RS01765 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SEQ_RS01785 SM00422 helix_turn_helix, mercury resistance SEQ_RS01790 SM01230 SEQ_RS01790 SEQ_RS01810 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01815 SM00382 ATPases associated with a variety of cellular activities SEQ_RS01820 SM00849 Metallo-beta-lactamase superfamily SEQ_RS01870 SM00479 SEQ_RS01870 SEQ_RS01875 SM00422 helix_turn_helix, mercury resistance SEQ_RS01890 SM00448 cheY-homologous receiver domain SEQ_RS01905 SM00387 Histidine kinase-like ATPases SEQ_RS01905 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS01935 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS01945 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SEQ_RS01945 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SEQ_RS01950 SM00419 helix_turn_helix, cAMP Regulatory protein SEQ_RS02000 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02025 SM00463 Small MutS-related domain SEQ_RS02025 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SEQ_RS02025 SM00534 ATPase domain of DNA mismatch repair MUTS family SEQ_RS02050 SM00478 endonuclease III SEQ_RS02115 SM00841 Elongation factor P, C-terminal SEQ_RS02115 SM01185 SEQ_RS02115 SEQ_RS02160 SM00354 helix_turn _helix lactose operon repressor SEQ_RS02165 SM00640 Glycosyl hydrolases family 32 SEQ_RS02190 SM00957 SecA DEAD-like domain SEQ_RS02190 SM00958 SecA preprotein cross-linking domain SEQ_RS02200 SM01005 Alanine racemase, C-terminal domain SEQ_RS02250 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02255 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02260 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02275 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02280 SM00487 DEAD-like helicases superfamily SEQ_RS02280 SM00490 helicase superfamily c-terminal domain SEQ_RS02285 SM00870 SEQ_RS02285 SEQ_RS02325 SM00845 GatB domain SEQ_RS02355 SM00855 Phosphoglycerate mutase family SEQ_RS02365 SM00047 Lysozyme subfamily 2 SEQ_RS02385 SM00271 DnaJ molecular chaperone homology domain SEQ_RS02395 SM00347 helix_turn_helix multiple antibiotic resistance protein SEQ_RS02415 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SEQ_RS02420 SM00822 SEQ_RS02420 SEQ_RS02425 SM00825 Beta-ketoacyl synthase SEQ_RS02440 SM00878 Biotin carboxylase C-terminal domain SEQ_RS02530 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02565 SM00322 K homology RNA-binding domain SEQ_RS02615 SM00420 helix_turn_helix, Deoxyribose operon repressor SEQ_RS02615 SM01134 SEQ_RS02615 SEQ_RS02740 SM00382 ATPases associated with a variety of cellular activities SEQ_RS02905 SM00342 helix_turn_helix, arabinose operon control protein SEQ_RS02905 SM00448 cheY-homologous receiver domain SEQ_RS02910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SEQ_RS02910 SM00387 Histidine kinase-like ATPases SEQ_RS02920 SM00873 B3/4 domain SEQ_RS02935 SM00419 helix_turn_helix, cAMP Regulatory protein SEQ_RS03020 SM00450 Rhodanese Homology Domain SEQ_RS03025 SM00838 Elongation factor G C-terminus SEQ_RS03050 SM00842 Cell division protein FtsA SEQ_RS03055 SM00864 Tubulin/FtsZ family, GTPase domain SEQ_RS03055 SM00865 Tubulin/FtsZ family, C-terminal domain SEQ_RS03075 SM00363 S4 RNA-binding domain SEQ_RS03100 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03100 SM01086 C-terminal, D2-small domain, of ClpB protein SEQ_RS03120 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03195 SM00411 bacterial (prokaryotic) histone like domain SEQ_RS03210 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS03225 SM00855 Phosphoglycerate mutase family SEQ_RS03250 SM00493 SEQ_RS03250 SEQ_RS03295 SM00487 DEAD-like helicases superfamily SEQ_RS03295 SM00490 helicase superfamily c-terminal domain SEQ_RS03325 SM00563 Phosphate acyltransferases SEQ_RS03335 SM00849 Metallo-beta-lactamase superfamily SEQ_RS03365 SM00363 S4 RNA-binding domain SEQ_RS03420 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SEQ_RS03425 SM00892 DNA/RNA non-specific endonuclease SEQ_RS03435 SM00487 DEAD-like helicases superfamily SEQ_RS03435 SM00490 helicase superfamily c-terminal domain SEQ_RS03460 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03480 SM00369 Leucine-rich repeats, typical (most populated) subfamily SEQ_RS03525 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS03525 SM00895 SEQ_RS03525 SEQ_RS03570 SM00116 Domain in cystathionine beta-synthase and other proteins. SEQ_RS03680 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SEQ_RS03680 SM00493 SEQ_RS03680 SEQ_RS03700 SM00966 SpoVT / AbrB like domain SEQ_RS03710 SM00487 DEAD-like helicases superfamily SEQ_RS03720 SM00490 helicase superfamily c-terminal domain SEQ_RS03775 SM00855 Phosphoglycerate mutase family SEQ_RS03840 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03845 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03850 SM00937 SEQ_RS03850 SEQ_RS03855 SM00382 ATPases associated with a variety of cellular activities SEQ_RS03865 SM00849 Metallo-beta-lactamase superfamily SEQ_RS03870 SM00479 SEQ_RS03870 SEQ_RS03870 SM00491 SEQ_RS03870 SEQ_RS03890 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS03950 SM00942 Primase C terminal 1 (PriCT-1) SEQ_RS03950 SM00943 Bifunctional DNA primase/polymerase, N-terminal SEQ_RS04010 SM00507 HNH nucleases SEQ_RS04130 SM00047 Lysozyme subfamily 2 SEQ_RS04205 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS04205 SM00866 SEQ_RS04205 SEQ_RS04215 SM01133 SEQ_RS04215 SEQ_RS04220 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS04220 SM00866 SEQ_RS04220 SEQ_RS04290 SM00830 Chorismate mutase type II SEQ_RS04310 SM00892 DNA/RNA non-specific endonuclease SEQ_RS04315 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS04370 SM00387 Histidine kinase-like ATPases SEQ_RS04370 SM00433 TopoisomeraseII SEQ_RS04390 SM01192 SEQ_RS04390 SEQ_RS04390 SM01193 SEQ_RS04390 SEQ_RS04425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SEQ_RS04425 SM00292 breast cancer carboxy-terminal domain SEQ_RS04425 SM00532 Ligase N family SEQ_RS04430 SM00046 Diacylglycerol kinase catalytic domain (presumed) SEQ_RS04435 SM00642 Alpha-amylase domain SEQ_RS04495 SM00382 ATPases associated with a variety of cellular activities SEQ_RS04530 SM00892 DNA/RNA non-specific endonuclease SEQ_RS04545 SM00873 B3/4 domain SEQ_RS04545 SM00874 tRNA synthetase B5 domain SEQ_RS04545 SM00896 Ferredoxin-fold anticodon binding domain SEQ_RS04555 SM00382 ATPases associated with a variety of cellular activities SEQ_RS04615 SM00642 Alpha-amylase domain SEQ_RS04670 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS04685 SM00400 zinc finger SEQ_RS04685 SM00493 SEQ_RS04685 SEQ_RS04720 SM00382 ATPases associated with a variety of cellular activities SEQ_RS04785 SM00257 Lysin motif SEQ_RS04875 SM00981 SEQ_RS04875 SEQ_RS04905 SM00382 ATPases associated with a variety of cellular activities SEQ_RS04910 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS04915 SM00481 DNA polymerase alpha chain like domain SEQ_RS04970 SM00382 ATPases associated with a variety of cellular activities SEQ_RS04975 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS05025 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS05035 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05070 SM00904 Riboflavin kinase SEQ_RS05110 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05115 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05130 SM00448 cheY-homologous receiver domain SEQ_RS05130 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS05135 SM00387 Histidine kinase-like ATPases SEQ_RS05135 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS05175 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SEQ_RS05180 SM01133 SEQ_RS05180 SEQ_RS05195 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05270 SM00155 Phospholipase D. Active site motifs. SEQ_RS05280 SM00859 Semialdehyde dehydrogenase, NAD binding domain SEQ_RS05290 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS05305 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05345 SM00448 cheY-homologous receiver domain SEQ_RS05345 SM00850 LytTr DNA-binding domain SEQ_RS05355 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05380 SM00857 Resolvase, N terminal domain SEQ_RS05435 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05435 SM00994 ClpX C4-type zinc finger SEQ_RS05435 SM01086 C-terminal, D2-small domain, of ClpB protein SEQ_RS05450 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05450 SM01086 C-terminal, D2-small domain, of ClpB protein SEQ_RS05455 SM00562 SEQ_RS05455 SEQ_RS05460 SM00892 DNA/RNA non-specific endonuclease SEQ_RS05495 SM00905 Dihydroneopterin aldolase SEQ_RS05510 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05555 SM00881 CoA binding domain SEQ_RS05570 SM01400 SEQ_RS05570 SEQ_RS05575 SM01118 SEQ_RS05575 SEQ_RS05580 SM00954 Region found in RelA / SpoT proteins SEQ_RS05620 SM01240 SEQ_RS05620 SEQ_RS05660 SM00937 SEQ_RS05660 SEQ_RS05705 SM00434 DNA Topoisomerase IV SEQ_RS05740 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05740 SM00962 SRP54-type protein, GTPase domain SEQ_RS05740 SM00963 SRP54-type protein, helical bundle domain SEQ_RS05750 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS05750 SM00866 SEQ_RS05750 SEQ_RS05765 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS05780 SM00387 Histidine kinase-like ATPases SEQ_RS05785 SM00448 cheY-homologous receiver domain SEQ_RS05785 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS05810 SM00382 ATPases associated with a variety of cellular activities SEQ_RS05880 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS05880 SM00895 SEQ_RS05880 SEQ_RS05895 SM00764 Citrate lyase ligase C-terminal domain SEQ_RS05935 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SEQ_RS05935 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SEQ_RS05935 SM00493 SEQ_RS05935 SEQ_RS05980 SM00857 Resolvase, N terminal domain SEQ_RS06010 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06015 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06020 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06065 SM00529 Helix-turn-helix diphteria tox regulatory element SEQ_RS06090 SM00487 DEAD-like helicases superfamily SEQ_RS06090 SM00490 helicase superfamily c-terminal domain SEQ_RS06105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SEQ_RS06105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SEQ_RS06105 SM00493 SEQ_RS06105 SEQ_RS06170 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06185 SM00387 Histidine kinase-like ATPases SEQ_RS06190 SM01040 BRO family, N-terminal domain SEQ_RS06195 SM00470 ParB-like nuclease domain SEQ_RS06210 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06225 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SEQ_RS06235 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06270 SM00047 Lysozyme subfamily 2 SEQ_RS06295 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS06300 SM01321 SEQ_RS06300 SEQ_RS06305 SM00047 Lysozyme subfamily 2 SEQ_RS06320 SM00420 helix_turn_helix, Deoxyribose operon repressor SEQ_RS06320 SM01134 SEQ_RS06320 SEQ_RS06375 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06385 SM00851 MGS-like domain SEQ_RS06385 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SEQ_RS06385 SM01209 SEQ_RS06385 SEQ_RS06390 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SEQ_RS06415 SM00363 S4 RNA-binding domain SEQ_RS06445 SM00854 Bacterial capsule synthesis protein PGA_cap SEQ_RS06495 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS06520 SM00434 DNA Topoisomerase IV SEQ_RS06530 SM00387 Histidine kinase-like ATPases SEQ_RS06530 SM00433 TopoisomeraseII SEQ_RS06535 SM01207 SEQ_RS06535 SEQ_RS06545 SM00986 Uracil DNA glycosylase superfamily SEQ_RS06545 SM00987 UreE urease accessory protein, C-terminal domain SEQ_RS06560 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS06580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SEQ_RS06670 SM00465 GIY-YIG type nucleases (URI domain) SEQ_RS06680 SM00342 helix_turn_helix, arabinose operon control protein SEQ_RS06680 SM00448 cheY-homologous receiver domain SEQ_RS06720 SM00838 Elongation factor G C-terminus SEQ_RS06775 SM01321 SEQ_RS06775 SEQ_RS06805 SM00729 Elongator protein 3, MiaB family, Radical SAM SEQ_RS06855 SM00861 Transketolase, pyrimidine binding domain SEQ_RS06865 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06875 SM00849 Metallo-beta-lactamase superfamily SEQ_RS06880 SM00382 ATPases associated with a variety of cellular activities SEQ_RS06900 SM00028 Tetratricopeptide repeats SEQ_RS06945 SM00478 endonuclease III SEQ_RS06945 SM00525 SEQ_RS06945 SEQ_RS07010 SM00354 helix_turn _helix lactose operon repressor SEQ_RS07055 SM00632 SEQ_RS07055 SEQ_RS07055 SM00642 Alpha-amylase domain SEQ_RS07055 SM01065 Starch binding domain SEQ_RS07060 SM00642 Alpha-amylase domain SEQ_RS07100 SM00487 DEAD-like helicases superfamily SEQ_RS07100 SM00490 helicase superfamily c-terminal domain SEQ_RS07105 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS07105 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SEQ_RS07110 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07170 SM00363 S4 RNA-binding domain SEQ_RS07270 SM00354 helix_turn _helix lactose operon repressor SEQ_RS07300 SM00831 Cation transporter/ATPase, N-terminus SEQ_RS07310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SEQ_RS07490 SM00731 SprT homologues. SEQ_RS07495 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS07495 SM00732 Likely ribonuclease with RNase H fold. SEQ_RS07505 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07525 SM00387 Histidine kinase-like ATPases SEQ_RS07525 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS07530 SM00448 cheY-homologous receiver domain SEQ_RS07530 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS07560 SM01061 CAT RNA binding domain SEQ_RS07565 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07565 SM00962 SRP54-type protein, GTPase domain SEQ_RS07565 SM00963 SRP54-type protein, helical bundle domain SEQ_RS07585 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07615 SM00968 SMC proteins Flexible Hinge Domain SEQ_RS07620 SM00358 Double-stranded RNA binding motif SEQ_RS07620 SM00535 Ribonuclease III family SEQ_RS07655 SM00849 Metallo-beta-lactamase superfamily SEQ_RS07660 SM00091 PAS domain SEQ_RS07660 SM00387 Histidine kinase-like ATPases SEQ_RS07660 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS07665 SM00448 cheY-homologous receiver domain SEQ_RS07665 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS07705 SM00387 Histidine kinase-like ATPases SEQ_RS07705 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS07710 SM00448 cheY-homologous receiver domain SEQ_RS07710 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS07725 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SEQ_RS07740 SM00642 Alpha-amylase domain SEQ_RS07745 SM00354 helix_turn _helix lactose operon repressor SEQ_RS07760 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07765 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS07785 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS07785 SM00955 SEQ_RS07785 SEQ_RS07810 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SEQ_RS07810 SM01232 SEQ_RS07810 SEQ_RS07885 SM00882 Coenzyme A transferase SEQ_RS07890 SM00882 Coenzyme A transferase SEQ_RS07910 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07940 SM00986 Uracil DNA glycosylase superfamily SEQ_RS07940 SM00987 UreE urease accessory protein, C-terminal domain SEQ_RS07975 SM00382 ATPases associated with a variety of cellular activities SEQ_RS07980 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08010 SM00649 Ribosomal protein L11/L12 SEQ_RS08015 SM00354 helix_turn _helix lactose operon repressor SEQ_RS08030 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08030 SM00843 SEQ_RS08030 SEQ_RS08045 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08055 SM00529 Helix-turn-helix diphteria tox regulatory element SEQ_RS08055 SM00899 SEQ_RS08055 SEQ_RS08170 SM00342 helix_turn_helix, arabinose operon control protein SEQ_RS08170 SM00448 cheY-homologous receiver domain SEQ_RS08175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SEQ_RS08220 SM00345 helix_turn_helix gluconate operon transcriptional repressor SEQ_RS08225 SM01149 SEQ_RS08225 SEQ_RS08230 SM00872 Alpha mannosidase, middle domain SEQ_RS08235 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08290 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08310 SM00448 cheY-homologous receiver domain SEQ_RS08310 SM00850 LytTr DNA-binding domain SEQ_RS08440 SM00047 Lysozyme subfamily 2 SEQ_RS08440 SM00287 Bacterial SH3 domain homologues SEQ_RS08595 SM00974 SEQ_RS08595 SEQ_RS08605 SM00857 Resolvase, N terminal domain SEQ_RS08610 SM00487 DEAD-like helicases superfamily SEQ_RS08625 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS08635 SM00421 helix_turn_helix, Lux Regulon SEQ_RS08635 SM00448 cheY-homologous receiver domain SEQ_RS08640 SM00387 Histidine kinase-like ATPases SEQ_RS08650 SM00220 Serine/Threonine protein kinases, catalytic domain SEQ_RS08650 SM00740 SEQ_RS08650 SEQ_RS08655 SM00331 Sigma factor PP2C-like phosphatases SEQ_RS08655 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SEQ_RS08670 SM00487 DEAD-like helicases superfamily SEQ_RS08670 SM00490 helicase superfamily c-terminal domain SEQ_RS08675 SM01409 SEQ_RS08675 SEQ_RS08680 SM00072 Guanylate kinase homologues. SEQ_RS08685 SM00322 K homology RNA-binding domain SEQ_RS08685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SEQ_RS08710 SM00981 SEQ_RS08710 SEQ_RS08765 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08775 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS08785 SM00487 DEAD-like helicases superfamily SEQ_RS08785 SM00490 helicase superfamily c-terminal domain SEQ_RS08795 SM00740 SEQ_RS08795 SEQ_RS08850 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08865 SM00861 Transketolase, pyrimidine binding domain SEQ_RS08955 SM00382 ATPases associated with a variety of cellular activities SEQ_RS08980 SM01131 SEQ_RS08980 SEQ_RS08995 SM01091 Transporter associated domain SEQ_RS09010 SM00729 Elongator protein 3, MiaB family, Radical SAM SEQ_RS09015 SM00014 Acid phosphatase homologues SEQ_RS09070 SM01234 SEQ_RS09070 SEQ_RS09075 SM00363 S4 RNA-binding domain SEQ_RS09095 SM00116 Domain in cystathionine beta-synthase and other proteins. SEQ_RS09130 SM00967 RNA 2'-O ribose methyltransferase substrate binding SEQ_RS09190 SM00487 DEAD-like helicases superfamily SEQ_RS09190 SM00490 helicase superfamily c-terminal domain SEQ_RS09215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SEQ_RS09215 SM00387 Histidine kinase-like ATPases SEQ_RS09215 SM00388 His Kinase A (phosphoacceptor) domain SEQ_RS09220 SM00448 cheY-homologous receiver domain SEQ_RS09220 SM00862 Transcriptional regulatory protein, C terminal SEQ_RS09270 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09270 SM00930 SEQ_RS09270 SEQ_RS09285 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS09295 SM00422 helix_turn_helix, mercury resistance SEQ_RS09315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SEQ_RS09325 SM01103 SEQ_RS09325 SEQ_RS09375 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09380 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09400 SM00936 Penicillin-binding protein 5, C-terminal domain SEQ_RS09405 SM00936 Penicillin-binding protein 5, C-terminal domain SEQ_RS09445 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09465 SM00062 Bacterial periplasmic substrate-binding proteins SEQ_RS09470 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09475 SM00244 prohibitin homologues SEQ_RS09480 SM01120 SEQ_RS09480 SEQ_RS09480 SM01121 SEQ_RS09480 SEQ_RS09530 SM00642 Alpha-amylase domain SEQ_RS09680 SM00046 Diacylglycerol kinase catalytic domain (presumed) SEQ_RS09685 SM00354 helix_turn _helix lactose operon repressor SEQ_RS09735 SM00487 DEAD-like helicases superfamily SEQ_RS09785 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS09815 SM00967 RNA 2'-O ribose methyltransferase substrate binding SEQ_RS09825 SM00535 Ribonuclease III family SEQ_RS09830 SM00840 SEQ_RS09830 SEQ_RS09845 SM00316 Ribosomal protein S1-like RNA-binding domain SEQ_RS09845 SM00322 K homology RNA-binding domain SEQ_RS09860 SM01387 SEQ_RS09860 SEQ_RS09880 SM00347 helix_turn_helix multiple antibiotic resistance protein SEQ_RS09885 SM00479 SEQ_RS09885 SEQ_RS09885 SM00481 DNA polymerase alpha chain like domain SEQ_RS09915 SM01323 SEQ_RS09915 SEQ_RS09925 SM00642 Alpha-amylase domain SEQ_RS09930 SM00382 ATPases associated with a variety of cellular activities SEQ_RS09950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SEQ_RS09950 SM00954 Region found in RelA / SpoT proteins SEQ_RS09960 SM00342 helix_turn_helix, arabinose operon control protein SEQ_RS09985 SM00354 helix_turn _helix lactose operon repressor SEQ_RS10035 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10055 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS10070 SM00641 Glycosyl hydrolases family 25 SEQ_RS10230 SM00487 DEAD-like helicases superfamily SEQ_RS10235 SM00990 SEQ_RS10235 SEQ_RS10240 SM00885 D5 N terminal like SEQ_RS10245 SM00482 DNA polymerase A domain SEQ_RS10300 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS10365 SM00855 Phosphoglycerate mutase family SEQ_RS10410 SM00420 helix_turn_helix, Deoxyribose operon repressor SEQ_RS10410 SM01134 SEQ_RS10410 SEQ_RS10420 SM00788 Adenylosuccinate synthetase SEQ_RS10445 SM00342 helix_turn_helix, arabinose operon control protein SEQ_RS10470 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10540 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS10580 SM00732 Likely ribonuclease with RNase H fold. SEQ_RS10595 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10600 SM00852 Probable molybdopterin binding domain SEQ_RS10615 SM00530 Helix-turn-helix XRE-family like proteins SEQ_RS10625 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SEQ_RS10635 SM00853 MutL C terminal dimerisation domain SEQ_RS10635 SM01340 SEQ_RS10635 SEQ_RS10640 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SEQ_RS10640 SM00534 ATPase domain of DNA mismatch repair MUTS family SEQ_RS10655 SM00836 DALR anticodon binding domain SEQ_RS10655 SM01016 Arginyl tRNA synthetase N terminal dom SEQ_RS10660 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10690 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10700 SM00448 cheY-homologous receiver domain SEQ_RS10700 SM00850 LytTr DNA-binding domain SEQ_RS10730 SM00954 Region found in RelA / SpoT proteins SEQ_RS10745 SM00421 helix_turn_helix, Lux Regulon SEQ_RS10745 SM00448 cheY-homologous receiver domain SEQ_RS10775 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10835 SM00363 S4 RNA-binding domain SEQ_RS10835 SM01390 SEQ_RS10835 SEQ_RS10860 SM01228 SEQ_RS10860 SEQ_RS10900 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10905 SM00382 ATPases associated with a variety of cellular activities SEQ_RS10980 SM00116 Domain in cystathionine beta-synthase and other proteins. SEQ_RS10980 SM01240 SEQ_RS10980 SEQ_RS10995 SM00382 ATPases associated with a variety of cellular activities SEQ_RS11025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SEQ_RS11030 SM00470 ParB-like nuclease domain