locus-tag class description SEQ_RS00005 PF00308 Bacterial dnaA protein SEQ_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SEQ_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SEQ_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SEQ_RS00010 PF02767 DNA polymerase III beta subunit, central domain SEQ_RS00020 PF01381 Helix-turn-helix SEQ_RS00025 PF01926 50S ribosome-binding GTPase SEQ_RS00025 PF06071 Protein of unknown function (DUF933) SEQ_RS00030 PF01195 Peptidyl-tRNA hydrolase SEQ_RS00035 PF00271 Helicase conserved C-terminal domain SEQ_RS00035 PF03461 TRCF domain SEQ_RS00035 PF02559 CarD-like/TRCF domain SEQ_RS00035 PF17757 UvrB interaction domain SEQ_RS00035 PF00270 DEAD/DEAH box helicase SEQ_RS00040 PF14667 Polysaccharide biosynthesis C-terminal domain SEQ_RS00040 PF01943 Polysaccharide biosynthesis protein SEQ_RS00045 PF01479 S4 domain SEQ_RS00060 PF01171 PP-loop family SEQ_RS00065 PF00156 Phosphoribosyl transferase domain SEQ_RS00070 PF06480 FtsH Extracellular SEQ_RS00070 PF01434 Peptidase family M41 SEQ_RS00070 PF00004 ATPase family associated with various cellular activities (AAA) SEQ_RS00070 PF17862 AAA+ lid domain SEQ_RS00075 PF13520 Amino acid permease SEQ_RS00195 PF05257 CHAP domain SEQ_RS00195 PF01476 LysM domain SEQ_RS00200 PF14572 Phosphoribosyl synthetase-associated domain SEQ_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SEQ_RS00205 PF11967 Recombination protein O N terminal SEQ_RS00205 PF02565 Recombination protein O C terminal SEQ_RS00210 PF02504 Fatty acid synthesis protein SEQ_RS00215 PF00550 Phosphopantetheine attachment site SEQ_RS00220 PF01259 SAICAR synthetase SEQ_RS00225 PF00586 AIR synthase related protein, N-terminal domain SEQ_RS00225 PF02769 AIR synthase related protein, C-terminal domain SEQ_RS00225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SEQ_RS00230 PF13537 Glutamine amidotransferase domain SEQ_RS00230 PF00156 Phosphoribosyl transferase domain SEQ_RS00235 PF02769 AIR synthase related protein, C-terminal domain SEQ_RS00235 PF00586 AIR synthase related protein, N-terminal domain SEQ_RS00240 PF00551 Formyl transferase SEQ_RS00245 PF02142 MGS-like domain SEQ_RS00245 PF01808 AICARFT/IMPCHase bienzyme SEQ_RS00255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SEQ_RS00255 PF02844 Phosphoribosylglycinamide synthetase, N domain SEQ_RS00255 PF02843 Phosphoribosylglycinamide synthetase, C domain SEQ_RS00260 PF00731 AIR carboxylase SEQ_RS00265 PF02222 ATP-grasp domain SEQ_RS00265 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SEQ_RS00265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SEQ_RS00275 PF10397 Adenylosuccinate lyase C-terminus SEQ_RS00275 PF00206 Lyase SEQ_RS00285 PF17864 RuvB AAA lid domain SEQ_RS00285 PF05491 RuvB C-terminal winged helix domain SEQ_RS00285 PF05496 Holliday junction DNA helicase RuvB P-loop domain SEQ_RS00290 PF01451 Low molecular weight phosphotyrosine protein phosphatase SEQ_RS00300 PF01757 Acyltransferase family SEQ_RS00305 PF00465 Iron-containing alcohol dehydrogenase SEQ_RS00305 PF00171 Aldehyde dehydrogenase family SEQ_RS00310 PF08240 Alcohol dehydrogenase GroES-like domain SEQ_RS00310 PF13823 Alcohol dehydrogenase GroES-associated SEQ_RS00310 PF00107 Zinc-binding dehydrogenase SEQ_RS00315 PF00107 Zinc-binding dehydrogenase SEQ_RS00315 PF08240 Alcohol dehydrogenase GroES-like domain SEQ_RS00320 PF00664 ABC transporter transmembrane region SEQ_RS00320 PF00005 ABC transporter SEQ_RS00335 PF01381 Helix-turn-helix SEQ_RS00340 PF00291 Pyridoxal-phosphate dependent enzyme SEQ_RS00350 PF00338 Ribosomal protein S10p/S20e SEQ_RS00355 PF00297 Ribosomal protein L3 SEQ_RS00360 PF00573 Ribosomal protein L4/L1 family SEQ_RS00365 PF00276 Ribosomal protein L23 SEQ_RS00370 PF00181 Ribosomal Proteins L2, RNA binding domain SEQ_RS00370 PF03947 Ribosomal Proteins L2, C-terminal domain SEQ_RS00375 PF00203 Ribosomal protein S19 SEQ_RS00380 PF00237 Ribosomal protein L22p/L17e SEQ_RS00385 PF00189 Ribosomal protein S3, C-terminal domain SEQ_RS00385 PF07650 KH domain SEQ_RS00390 PF00252 Ribosomal protein L16p/L10e SEQ_RS00395 PF00831 Ribosomal L29 protein SEQ_RS00400 PF00366 Ribosomal protein S17 SEQ_RS00405 PF00238 Ribosomal protein L14p/L23e SEQ_RS00410 PF00467 KOW motif SEQ_RS00410 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SEQ_RS00415 PF00281 Ribosomal protein L5 SEQ_RS00415 PF00673 ribosomal L5P family C-terminus SEQ_RS00425 PF00410 Ribosomal protein S8 SEQ_RS00430 PF00347 Ribosomal protein L6 SEQ_RS00435 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SEQ_RS00440 PF00333 Ribosomal protein S5, N-terminal domain SEQ_RS00440 PF03719 Ribosomal protein S5, C-terminal domain SEQ_RS00445 PF00327 Ribosomal protein L30p/L7e SEQ_RS00450 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SEQ_RS00455 PF00344 SecY translocase SEQ_RS00465 PF01176 Translation initiation factor 1A / IF-1 SEQ_RS00470 PF00416 Ribosomal protein S13/S18 SEQ_RS00475 PF00411 Ribosomal protein S11 SEQ_RS00480 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SEQ_RS00480 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SEQ_RS00480 PF01000 RNA polymerase Rpb3/RpoA insert domain SEQ_RS00485 PF01196 Ribosomal protein L17 SEQ_RS00590 PF00746 LPXTG cell wall anchor motif SEQ_RS00590 PF04650 YSIRK type signal peptide SEQ_RS00595 PF00293 NUDIX domain SEQ_RS00600 PF00288 GHMP kinases N terminal domain SEQ_RS00600 PF08544 GHMP kinases C terminal SEQ_RS00605 PF01047 MarR family SEQ_RS00610 PF00005 ABC transporter SEQ_RS00615 PF00950 ABC 3 transport family SEQ_RS00620 PF00579 tRNA synthetases class I (W and Y) SEQ_RS00620 PF01479 S4 domain SEQ_RS00625 PF00912 Transglycosylase SEQ_RS00625 PF00905 Penicillin binding protein transpeptidase domain SEQ_RS00630 PF04563 RNA polymerase beta subunit SEQ_RS00630 PF00562 RNA polymerase Rpb2, domain 6 SEQ_RS00630 PF04565 RNA polymerase Rpb2, domain 3 SEQ_RS00630 PF04560 RNA polymerase Rpb2, domain 7 SEQ_RS00630 PF10385 RNA polymerase beta subunit external 1 domain SEQ_RS00630 PF04561 RNA polymerase Rpb2, domain 2 SEQ_RS00635 PF04997 RNA polymerase Rpb1, domain 1 SEQ_RS00635 PF00623 RNA polymerase Rpb1, domain 2 SEQ_RS00635 PF04983 RNA polymerase Rpb1, domain 3 SEQ_RS00635 PF05000 RNA polymerase Rpb1, domain 4 SEQ_RS00635 PF04998 RNA polymerase Rpb1, domain 5 SEQ_RS00645 PF00842 Alanine racemase, C-terminal domain SEQ_RS00645 PF01757 Acyltransferase family SEQ_RS00645 PF01168 Alanine racemase, N-terminal domain SEQ_RS00660 PF00005 ABC transporter SEQ_RS00665 PF00437 Type II/IV secretion system protein SEQ_RS00670 PF00482 Type II secretion system (T2SS), protein F SEQ_RS00675 PF07963 Prokaryotic N-terminal methylation motif SEQ_RS00715 PF00871 Acetokinase family SEQ_RS00725 PF00665 Integrase core domain SEQ_RS00725 PF13333 Integrase core domain SEQ_RS00735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SEQ_RS00740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS00745 PF03611 PTS system sugar-specific permease component SEQ_RS00750 PF00456 Transketolase, thiamine diphosphate binding domain SEQ_RS00755 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SEQ_RS00755 PF02780 Transketolase, C-terminal domain SEQ_RS00755 PF02779 Transketolase, pyrimidine binding domain SEQ_RS00760 PF05649 Peptidase family M13 SEQ_RS00760 PF01431 Peptidase family M13 SEQ_RS00765 PF00889 Elongation factor TS SEQ_RS00770 PF00318 Ribosomal protein S2 SEQ_RS00775 PF13192 Thioredoxin domain SEQ_RS00775 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS00780 PF00578 AhpC/TSA family SEQ_RS00790 PF14659 Phage integrase, N-terminal SAM-like domain SEQ_RS00790 PF00589 Phage integrase family SEQ_RS00800 PF01381 Helix-turn-helix SEQ_RS00845 PF03837 RecT family SEQ_RS01045 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SEQ_RS01045 PF13457 GW (Gly-Tryp) dipeptide domain SEQ_RS01080 PF00313 'Cold-shock' DNA-binding domain SEQ_RS01085 PF05848 CtsR N-terminal HTH domain SEQ_RS01085 PF17727 CtsR C-terminal dimerization domain SEQ_RS01090 PF07724 AAA domain (Cdc48 subfamily) SEQ_RS01090 PF17871 AAA lid domain SEQ_RS01090 PF00004 ATPase family associated with various cellular activities (AAA) SEQ_RS01090 PF02861 Clp amino terminal domain, pathogenicity island component SEQ_RS01090 PF10431 C-terminal, D2-small domain, of ClpB protein SEQ_RS01120 PF13333 Integrase core domain SEQ_RS01120 PF13276 HTH-like domain SEQ_RS01120 PF00665 Integrase core domain SEQ_RS01130 PF00118 TCP-1/cpn60 chaperonin family SEQ_RS01135 PF00166 Chaperonin 10 Kd subunit SEQ_RS01145 PF00665 Integrase core domain SEQ_RS01145 PF13333 Integrase core domain SEQ_RS01150 PF00293 NUDIX domain SEQ_RS01175 PF00005 ABC transporter SEQ_RS01195 PF00849 RNA pseudouridylate synthase SEQ_RS01195 PF01479 S4 domain SEQ_RS01215 PF00905 Penicillin binding protein transpeptidase domain SEQ_RS01215 PF00912 Transglycosylase SEQ_RS01225 PF00467 KOW motif SEQ_RS01225 PF02357 Transcription termination factor nusG SEQ_RS01230 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SEQ_RS01230 PF05043 Mga helix-turn-helix domain SEQ_RS01230 PF00874 PRD domain SEQ_RS01235 PF04650 YSIRK type signal peptide SEQ_RS01235 PF00746 LPXTG cell wall anchor motif SEQ_RS01240 PF13603 Leucyl-tRNA synthetase, Domain 2 SEQ_RS01240 PF09334 tRNA synthetases class I (M) SEQ_RS01240 PF08264 Anticodon-binding domain of tRNA SEQ_RS01240 PF00133 tRNA synthetases class I (I, L, M and V) SEQ_RS01270 PF03611 PTS system sugar-specific permease component SEQ_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS01280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SEQ_RS01285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SEQ_RS01290 PF01261 Xylose isomerase-like TIM barrel SEQ_RS01295 PF00596 Class II Aldolase and Adducin N-terminal domain SEQ_RS01315 PF00005 ABC transporter SEQ_RS01315 PF00571 CBS domain SEQ_RS01320 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS01325 PF01367 5'-3' exonuclease, C-terminal SAM fold SEQ_RS01325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SEQ_RS01325 PF00476 DNA polymerase family A SEQ_RS01330 PF13380 CoA binding domain SEQ_RS01335 PF01475 Ferric uptake regulator family SEQ_RS01355 PF01702 Queuine tRNA-ribosyltransferase SEQ_RS01360 PF00746 LPXTG cell wall anchor motif SEQ_RS01360 PF04650 YSIRK type signal peptide SEQ_RS01365 PF00665 Integrase core domain SEQ_RS01365 PF13333 Integrase core domain SEQ_RS01365 PF13276 HTH-like domain SEQ_RS01380 PF02632 BioY family SEQ_RS01385 PF12706 Beta-lactamase superfamily domain SEQ_RS01390 PF14437 MafB19-like deaminase SEQ_RS01405 PF00535 Glycosyl transferase family 2 SEQ_RS01410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SEQ_RS01410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SEQ_RS01410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SEQ_RS01415 PF00483 Nucleotidyl transferase SEQ_RS01420 PF01694 Rhomboid family SEQ_RS01425 PF01812 5-formyltetrahydrofolate cyclo-ligase family SEQ_RS01450 PF04650 YSIRK type signal peptide SEQ_RS01450 PF00746 LPXTG cell wall anchor motif SEQ_RS01465 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SEQ_RS01465 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SEQ_RS01470 PF03608 PTS system enzyme II sorbitol-specific factor SEQ_RS01480 PF05043 Mga helix-turn-helix domain SEQ_RS01480 PF08279 HTH domain SEQ_RS01480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SEQ_RS01480 PF00874 PRD domain SEQ_RS01485 PF00342 Phosphoglucose isomerase SEQ_RS01490 PF12804 MobA-like NTP transferase domain SEQ_RS01490 PF00132 Bacterial transferase hexapeptide (six repeats) SEQ_RS01495 PF00483 Nucleotidyl transferase SEQ_RS01500 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SEQ_RS01500 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SEQ_RS01510 PF00664 ABC transporter transmembrane region SEQ_RS01510 PF00005 ABC transporter SEQ_RS01515 PF00664 ABC transporter transmembrane region SEQ_RS01515 PF00005 ABC transporter SEQ_RS01520 PF02677 Epoxyqueuosine reductase QueH SEQ_RS01525 PF00692 dUTPase SEQ_RS01530 PF18073 Rubredoxin metal binding domain SEQ_RS01540 PF00484 Carbonic anhydrase SEQ_RS01545 PF01987 Mitochondrial biogenesis AIM24 SEQ_RS01550 PF00749 tRNA synthetases class I (E and Q), catalytic domain SEQ_RS01570 PF00825 Ribonuclease P SEQ_RS01575 PF02096 60Kd inner membrane protein SEQ_RS01580 PF14804 Jag N-terminus SEQ_RS01580 PF01424 R3H domain SEQ_RS01615 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SEQ_RS01620 PF02378 Phosphotransferase system, EIIC SEQ_RS01620 PF00367 phosphotransferase system, EIIB SEQ_RS01620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SEQ_RS01625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SEQ_RS01625 PF00367 phosphotransferase system, EIIB SEQ_RS01625 PF02378 Phosphotransferase system, EIIC SEQ_RS01640 PF00468 Ribosomal protein L34 SEQ_RS01655 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS01660 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS01665 PF04074 YhcH/YjgK/YiaL SEQ_RS01675 PF00701 Dihydrodipicolinate synthetase family SEQ_RS01680 PF00480 ROK family SEQ_RS01690 PF01380 SIS domain SEQ_RS01690 PF01418 Helix-turn-helix domain, rpiR family SEQ_RS01695 PF01026 TatD related DNase SEQ_RS01700 PF13331 Domain of unknown function (DUF4093) SEQ_RS01705 PF00398 Ribosomal RNA adenine dimethylase SEQ_RS01710 PF16745 RsgA N-terminal domain SEQ_RS01710 PF03193 RsgA GTPase SEQ_RS01715 PF00834 Ribulose-phosphate 3 epimerase family SEQ_RS01720 PF04263 Thiamin pyrophosphokinase, catalytic domain SEQ_RS01720 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SEQ_RS01725 PF02646 RmuC family SEQ_RS01730 PF01966 HD domain SEQ_RS01735 PF00156 Phosphoribosyl transferase domain SEQ_RS01735 PF09182 Bacterial purine repressor, N-terminal SEQ_RS01745 PF00164 Ribosomal protein S12/S23 SEQ_RS01750 PF00177 Ribosomal protein S7p/S5e SEQ_RS01755 PF03144 Elongation factor Tu domain 2 SEQ_RS01755 PF00679 Elongation factor G C-terminus SEQ_RS01755 PF14492 Elongation Factor G, domain II SEQ_RS01755 PF03764 Elongation factor G, domain IV SEQ_RS01755 PF00009 Elongation factor Tu GTP binding domain SEQ_RS01765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SEQ_RS01765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SEQ_RS01770 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SEQ_RS01775 PF00162 Phosphoglycerate kinase SEQ_RS01785 PF13411 MerR HTH family regulatory protein SEQ_RS01790 PF00120 Glutamine synthetase, catalytic domain SEQ_RS01790 PF03951 Glutamine synthetase, beta-Grasp domain SEQ_RS01795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SEQ_RS01800 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS01805 PF12911 N-terminal TM domain of oligopeptide transport permease C SEQ_RS01805 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS01810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SEQ_RS01810 PF00005 ABC transporter SEQ_RS01815 PF00005 ABC transporter SEQ_RS01815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SEQ_RS01820 PF00753 Metallo-beta-lactamase superfamily SEQ_RS01820 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SEQ_RS01820 PF17770 Ribonuclease J C-terminal domain SEQ_RS01825 PF07288 Protein of unknown function (DUF1447) SEQ_RS01830 PF00814 Glycoprotease family SEQ_RS01840 PF00814 Glycoprotease family SEQ_RS01855 PF00253 Ribosomal protein S14p/S29e SEQ_RS01865 PF04394 Protein of unknown function, DUF536 SEQ_RS01865 PF08279 HTH domain SEQ_RS01870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SEQ_RS01870 PF11490 DNA polymerase III polC-type N-terminus II SEQ_RS01870 PF14579 Helix-hairpin-helix motif SEQ_RS01870 PF02811 PHP domain SEQ_RS01870 PF00929 Exonuclease SEQ_RS01870 PF01336 OB-fold nucleic acid binding domain SEQ_RS01870 PF07733 Bacterial DNA polymerase III alpha NTPase domain SEQ_RS01875 PF13411 MerR HTH family regulatory protein SEQ_RS01880 PF02575 YbaB/EbfC DNA-binding family SEQ_RS01890 PF00072 Response regulator receiver domain SEQ_RS01890 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS01900 PF13333 Integrase core domain SEQ_RS01900 PF13276 HTH-like domain SEQ_RS01900 PF00665 Integrase core domain SEQ_RS01905 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS01945 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SEQ_RS01945 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SEQ_RS01945 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SEQ_RS01950 PF13545 Crp-like helix-turn-helix domain SEQ_RS01955 PF07690 Major Facilitator Superfamily SEQ_RS01965 PF00230 Major intrinsic protein SEQ_RS01975 PF00144 Beta-lactamase SEQ_RS01985 PF02901 Pyruvate formate lyase-like SEQ_RS01985 PF01228 Glycine radical SEQ_RS01990 PF11799 impB/mucB/samB family C-terminal domain SEQ_RS01990 PF11798 IMS family HHH motif SEQ_RS01990 PF00817 impB/mucB/samB family SEQ_RS02000 PF14490 Helix-hairpin-helix containing domain SEQ_RS02000 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SEQ_RS02000 PF13538 UvrD-like helicase C-terminal domain SEQ_RS02005 PF10502 Signal peptidase, peptidase S26 SEQ_RS02010 PF01351 Ribonuclease HII SEQ_RS02010 PF11858 Domain of unknown function (DUF3378) SEQ_RS02020 PF02674 Colicin V production protein SEQ_RS02025 PF01713 Smr domain SEQ_RS02025 PF00488 MutS domain V SEQ_RS02030 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS02030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SEQ_RS02035 PF00085 Thioredoxin SEQ_RS02050 PF14815 NUDIX domain SEQ_RS02050 PF00730 HhH-GPD superfamily base excision DNA repair protein SEQ_RS02060 PF01250 Ribosomal protein S6 SEQ_RS02065 PF00436 Single-strand binding protein family SEQ_RS02070 PF01084 Ribosomal protein S18 SEQ_RS02080 PF13276 HTH-like domain SEQ_RS02080 PF13333 Integrase core domain SEQ_RS02080 PF00665 Integrase core domain SEQ_RS02095 PF17760 UvrA interaction domain SEQ_RS02095 PF17755 UvrA DNA-binding domain SEQ_RS02095 PF00005 ABC transporter SEQ_RS02100 PF00557 Metallopeptidase family M24 SEQ_RS02100 PF01321 Creatinase/Prolidase N-terminal domain SEQ_RS02105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SEQ_RS02115 PF01132 Elongation factor P (EF-P) OB domain SEQ_RS02115 PF09285 Elongation factor P, C-terminal SEQ_RS02115 PF08207 Elongation factor P (EF-P) KOW-like domain SEQ_RS02120 PF03780 Asp23 family, cell envelope-related function SEQ_RS02125 PF01029 NusB family SEQ_RS02160 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS02165 PF08244 Glycosyl hydrolases family 32 C terminal SEQ_RS02165 PF00251 Glycosyl hydrolases family 32 N-terminal domain SEQ_RS02170 PF02378 Phosphotransferase system, EIIC SEQ_RS02170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SEQ_RS02170 PF00367 phosphotransferase system, EIIB SEQ_RS02180 PF00480 ROK family SEQ_RS02185 PF01238 Phosphomannose isomerase type I SEQ_RS02190 PF02810 SEC-C motif SEQ_RS02190 PF07517 SecA DEAD-like domain SEQ_RS02190 PF07516 SecA Wing and Scaffold domain SEQ_RS02190 PF01043 SecA preprotein cross-linking domain SEQ_RS02195 PF01648 4'-phosphopantetheinyl transferase superfamily SEQ_RS02200 PF01168 Alanine racemase, N-terminal domain SEQ_RS02200 PF00842 Alanine racemase, C-terminal domain SEQ_RS02210 PF13276 HTH-like domain SEQ_RS02210 PF00665 Integrase core domain SEQ_RS02210 PF13333 Integrase core domain SEQ_RS02225 PF05257 CHAP domain SEQ_RS02225 PF01476 LysM domain SEQ_RS02240 PF01497 Periplasmic binding protein SEQ_RS02245 PF01032 FecCD transport family SEQ_RS02250 PF00005 ABC transporter SEQ_RS02255 PF00005 ABC transporter SEQ_RS02255 PF00664 ABC transporter transmembrane region SEQ_RS02260 PF00664 ABC transporter transmembrane region SEQ_RS02260 PF00005 ABC transporter SEQ_RS02275 PF00005 ABC transporter SEQ_RS02280 PF00270 DEAD/DEAH box helicase SEQ_RS02280 PF00271 Helicase conserved C-terminal domain SEQ_RS02280 PF17191 RecG wedge domain SEQ_RS02285 PF17763 Glutaminase/Asparaginase C-terminal domain SEQ_RS02285 PF00710 Asparaginase, N-terminal SEQ_RS02300 PF00155 Aminotransferase class I and II SEQ_RS02305 PF08222 CodY helix-turn-helix domain SEQ_RS02305 PF06018 CodY GAF-like domain SEQ_RS02310 PF00857 Isochorismatase family SEQ_RS02315 PF02686 Glu-tRNAGln amidotransferase C subunit SEQ_RS02320 PF01425 Amidase SEQ_RS02325 PF02934 GatB/GatE catalytic domain SEQ_RS02325 PF02637 GatB domain SEQ_RS02330 PF00892 EamA-like transporter family SEQ_RS02335 PF04226 Transglycosylase associated protein SEQ_RS02350 PF05167 Uncharacterised ACR (DUF711) SEQ_RS02355 PF00300 Histidine phosphatase superfamily (branch 1) SEQ_RS02360 PF02557 D-alanyl-D-alanine carboxypeptidase SEQ_RS02370 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SEQ_RS02370 PF01628 HrcA protein C terminal domain SEQ_RS02375 PF01025 GrpE SEQ_RS02380 PF00012 Hsp70 protein SEQ_RS02385 PF00684 DnaJ central domain SEQ_RS02385 PF00226 DnaJ domain SEQ_RS02385 PF01556 DnaJ C terminal domain SEQ_RS02390 PF00378 Enoyl-CoA hydratase/isomerase SEQ_RS02400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SEQ_RS02400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SEQ_RS02405 PF00550 Phosphopantetheine attachment site SEQ_RS02410 PF03060 Nitronate monooxygenase SEQ_RS02415 PF00698 Acyl transferase domain SEQ_RS02425 PF02801 Beta-ketoacyl synthase, C-terminal domain SEQ_RS02425 PF00109 Beta-ketoacyl synthase, N-terminal domain SEQ_RS02430 PF00364 Biotin-requiring enzyme SEQ_RS02435 PF07977 FabA-like domain SEQ_RS02440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SEQ_RS02440 PF02785 Biotin carboxylase C-terminal domain SEQ_RS02440 PF00289 Biotin carboxylase, N-terminal domain SEQ_RS02445 PF01039 Carboxyl transferase domain SEQ_RS02445 PF17848 Acetyl-coA carboxylase zinc finger domain SEQ_RS02450 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SEQ_RS02455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SEQ_RS02455 PF02403 Seryl-tRNA synthetase N-terminal domain SEQ_RS02470 PF03613 PTS system mannose/fructose/sorbose family IID component SEQ_RS02475 PF03609 PTS system sorbose-specific iic component SEQ_RS02480 PF03830 PTS system sorbose subfamily IIB component SEQ_RS02480 PF03610 PTS system fructose IIA component SEQ_RS02495 PF00860 Permease family SEQ_RS02500 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SEQ_RS02510 PF03816 Cell envelope-related transcriptional attenuator domain SEQ_RS02520 PF01230 HIT domain SEQ_RS02530 PF00005 ABC transporter SEQ_RS02535 PF05975 Bacterial ABC transporter protein EcsB SEQ_RS02545 PF02390 Putative methyltransferase SEQ_RS02560 PF17384 RimP C-terminal SH3 domain SEQ_RS02560 PF02576 RimP N-terminal domain SEQ_RS02565 PF13184 NusA-like KH domain SEQ_RS02565 PF00575 S1 RNA binding domain SEQ_RS02565 PF08529 NusA N-terminal domain SEQ_RS02570 PF04296 Protein of unknown function (DUF448) SEQ_RS02575 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SEQ_RS02580 PF00009 Elongation factor Tu GTP binding domain SEQ_RS02580 PF11987 Translation-initiation factor 2 SEQ_RS02580 PF04760 Translation initiation factor IF-2, N-terminal region SEQ_RS02585 PF02033 Ribosome-binding factor A SEQ_RS02590 PF07859 alpha/beta hydrolase fold SEQ_RS02595 PF03965 Penicillinase repressor SEQ_RS02600 PF00403 Heavy-metal-associated domain SEQ_RS02615 PF08220 DeoR-like helix-turn-helix domain SEQ_RS02615 PF00455 DeoR C terminal sensor domain SEQ_RS02620 PF02502 Ribose/Galactose Isomerase SEQ_RS02625 PF02502 Ribose/Galactose Isomerase SEQ_RS02630 PF00294 pfkB family carbohydrate kinase SEQ_RS02635 PF01791 DeoC/LacD family aldolase SEQ_RS02640 PF00232 Glycosyl hydrolase family 1 SEQ_RS02650 PF03458 UPF0126 domain SEQ_RS02665 PF02645 Uncharacterised protein, DegV family COG1307 SEQ_RS02680 PF01979 Amidohydrolase family SEQ_RS02685 PF00248 Aldo/keto reductase family SEQ_RS02690 PF12704 MacB-like periplasmic core domain SEQ_RS02690 PF00005 ABC transporter SEQ_RS02690 PF02687 FtsX-like permease family SEQ_RS02695 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SEQ_RS02700 PF02091 Glycyl-tRNA synthetase alpha subunit SEQ_RS02705 PF02092 Glycyl-tRNA synthetase beta subunit SEQ_RS02710 PF05979 Bacterial protein of unknown function (DUF896) SEQ_RS02740 PF00005 ABC transporter SEQ_RS02770 PF03932 CutC family SEQ_RS02780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SEQ_RS02780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SEQ_RS02785 PF03960 ArsC family SEQ_RS02790 PF03372 Endonuclease/Exonuclease/phosphatase family SEQ_RS02795 PF06280 Fn3-like domain SEQ_RS02795 PF02225 PA domain SEQ_RS02795 PF00746 LPXTG cell wall anchor motif SEQ_RS02795 PF00082 Subtilase family SEQ_RS02815 PF09334 tRNA synthetases class I (M) SEQ_RS02815 PF01588 Putative tRNA binding domain SEQ_RS02820 PF00268 Ribonucleotide reductase, small chain SEQ_RS02825 PF07972 NrdI Flavodoxin like SEQ_RS02830 PF08343 Ribonucleotide reductase N-terminal SEQ_RS02830 PF00317 Ribonucleotide reductase, all-alpha domain SEQ_RS02830 PF02867 Ribonucleotide reductase, barrel domain SEQ_RS02840 PF13333 Integrase core domain SEQ_RS02840 PF13276 HTH-like domain SEQ_RS02840 PF00665 Integrase core domain SEQ_RS02860 PF10140 WXG100 protein secretion system (Wss), protein YukC SEQ_RS02865 PF01580 FtsK/SpoIIIE family SEQ_RS02865 PF12538 DNA transporter SEQ_RS02890 PF02683 Cytochrome C biogenesis protein transmembrane region SEQ_RS02895 PF08534 Redoxin SEQ_RS02900 PF01625 Peptide methionine sulfoxide reductase SEQ_RS02900 PF01641 SelR domain SEQ_RS02905 PF00072 Response regulator receiver domain SEQ_RS02905 PF12833 Helix-turn-helix domain SEQ_RS02910 PF06580 Histidine kinase SEQ_RS02910 PF02743 Cache domain SEQ_RS02910 PF00672 HAMP domain SEQ_RS02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS02915 PF04237 YjbR SEQ_RS02930 PF01316 Arginine repressor, DNA binding domain SEQ_RS02930 PF02863 Arginine repressor, C-terminal domain SEQ_RS02945 PF13673 Acetyltransferase (GNAT) domain SEQ_RS02950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SEQ_RS02950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SEQ_RS02955 PF03606 C4-dicarboxylate anaerobic carrier SEQ_RS02960 PF01546 Peptidase family M20/M25/M40 SEQ_RS02965 PF00696 Amino acid kinase family SEQ_RS02970 PF03590 Aspartate-ammonia ligase SEQ_RS02980 PF01467 Cytidylyltransferase-like SEQ_RS02985 PF05362 Lon protease (S16) C-terminal proteolytic domain SEQ_RS02985 PF13180 PDZ domain SEQ_RS02990 PF06265 Protein of unknown function (DUF1027) SEQ_RS02995 PF04055 Radical SAM superfamily SEQ_RS03005 PF00210 Ferritin-like domain SEQ_RS03010 PF06014 Bacterial protein of unknown function (DUF910) SEQ_RS03015 PF00480 ROK family SEQ_RS03025 PF00009 Elongation factor Tu GTP binding domain SEQ_RS03025 PF14492 Elongation Factor G, domain II SEQ_RS03025 PF00679 Elongation factor G C-terminus SEQ_RS03025 PF03144 Elongation factor Tu domain 2 SEQ_RS03035 PF02875 Mur ligase family, glutamate ligase domain SEQ_RS03035 PF08245 Mur ligase middle domain SEQ_RS03040 PF03033 Glycosyltransferase family 28 N-terminal domain SEQ_RS03040 PF04101 Glycosyltransferase family 28 C-terminal domain SEQ_RS03045 PF08478 POTRA domain, FtsQ-type SEQ_RS03050 PF02491 SHS2 domain inserted in FTSA SEQ_RS03050 PF11983 Membrane-attachment and polymerisation-promoting switch SEQ_RS03055 PF12327 FtsZ family, C-terminal domain SEQ_RS03055 PF00091 Tubulin/FtsZ family, GTPase domain SEQ_RS03060 PF01168 Alanine racemase, N-terminal domain SEQ_RS03065 PF04472 Cell division protein SepF SEQ_RS03080 PF05103 DivIVA protein SEQ_RS03085 PF00133 tRNA synthetases class I (I, L, M and V) SEQ_RS03085 PF08264 Anticodon-binding domain of tRNA SEQ_RS03095 PF00293 NUDIX domain SEQ_RS03100 PF17871 AAA lid domain SEQ_RS03100 PF10431 C-terminal, D2-small domain, of ClpB protein SEQ_RS03100 PF00004 ATPase family associated with various cellular activities (AAA) SEQ_RS03100 PF07724 AAA domain (Cdc48 subfamily) SEQ_RS03105 PF08796 Protein of unknown function (DUF1797) SEQ_RS03110 PF02370 M protein repeat SEQ_RS03110 PF00746 LPXTG cell wall anchor motif SEQ_RS03115 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS03120 PF00005 ABC transporter SEQ_RS03130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SEQ_RS03130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SEQ_RS03130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SEQ_RS03130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SEQ_RS03135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SEQ_RS03135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SEQ_RS03140 PF01256 Carbohydrate kinase SEQ_RS03145 PF02601 Exonuclease VII, large subunit SEQ_RS03145 PF13742 OB-fold nucleic acid binding domain SEQ_RS03150 PF02609 Exonuclease VII small subunit SEQ_RS03155 PF00348 Polyprenyl synthetase SEQ_RS03160 PF01728 FtsJ-like methyltransferase SEQ_RS03160 PF01479 S4 domain SEQ_RS03165 PF02863 Arginine repressor, C-terminal domain SEQ_RS03165 PF01316 Arginine repressor, DNA binding domain SEQ_RS03170 PF13476 AAA domain SEQ_RS03180 PF02645 Uncharacterised protein, DegV family COG1307 SEQ_RS03185 PF13472 GDSL-like Lipase/Acylhydrolase family SEQ_RS03190 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) SEQ_RS03195 PF00216 Bacterial DNA-binding protein SEQ_RS03200 PF03496 ADP-ribosyltransferase exoenzyme SEQ_RS03210 PF01381 Helix-turn-helix SEQ_RS03220 PF01180 Dihydroorotate dehydrogenase SEQ_RS03225 PF00300 Histidine phosphatase superfamily (branch 1) SEQ_RS03230 PF02829 3H domain SEQ_RS03230 PF08279 HTH domain SEQ_RS03240 PF01226 Formate/nitrite transporter SEQ_RS03245 PF03717 Penicillin-binding Protein dimerisation domain SEQ_RS03245 PF00905 Penicillin binding protein transpeptidase domain SEQ_RS03250 PF02132 RecR protein SEQ_RS03250 PF13662 Toprim domain SEQ_RS03255 PF07478 D-ala D-ala ligase C-terminus SEQ_RS03255 PF01820 D-ala D-ala ligase N-terminus SEQ_RS03265 PF13276 HTH-like domain SEQ_RS03265 PF00665 Integrase core domain SEQ_RS03265 PF13333 Integrase core domain SEQ_RS03280 PF02875 Mur ligase family, glutamate ligase domain SEQ_RS03280 PF01225 Mur ligase family, catalytic domain SEQ_RS03280 PF08245 Mur ligase middle domain SEQ_RS03290 PF16658 Class II release factor RF3, C-terminal domain SEQ_RS03290 PF03144 Elongation factor Tu domain 2 SEQ_RS03290 PF00009 Elongation factor Tu GTP binding domain SEQ_RS03295 PF00270 DEAD/DEAH box helicase SEQ_RS03295 PF00271 Helicase conserved C-terminal domain SEQ_RS03300 PF02705 K+ potassium transporter SEQ_RS03305 PF13276 HTH-like domain SEQ_RS03305 PF00665 Integrase core domain SEQ_RS03305 PF13333 Integrase core domain SEQ_RS03315 PF01541 GIY-YIG catalytic domain SEQ_RS03320 PF05175 Methyltransferase small domain SEQ_RS03325 PF01553 Acyltransferase SEQ_RS03335 PF00753 Metallo-beta-lactamase superfamily SEQ_RS03335 PF13567 Domain of unknown function (DUF4131) SEQ_RS03335 PF03772 Competence protein SEQ_RS03345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SEQ_RS03345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SEQ_RS03355 PF02547 Queuosine biosynthesis protein SEQ_RS03360 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SEQ_RS03365 PF01479 S4 domain SEQ_RS03365 PF00849 RNA pseudouridylate synthase SEQ_RS03380 PF00665 Integrase core domain SEQ_RS03380 PF13333 Integrase core domain SEQ_RS03380 PF13276 HTH-like domain SEQ_RS03390 PF08439 Oligopeptidase F SEQ_RS03390 PF01432 Peptidase family M3 SEQ_RS03405 PF13419 Haloacid dehalogenase-like hydrolase SEQ_RS03410 PF01596 O-methyltransferase SEQ_RS03415 PF13145 PPIC-type PPIASE domain SEQ_RS03420 PF01411 tRNA synthetases class II (A) SEQ_RS03420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SEQ_RS03420 PF02272 DHHA1 domain SEQ_RS03430 PF01522 Polysaccharide deacetylase SEQ_RS03430 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SEQ_RS03435 PF00271 Helicase conserved C-terminal domain SEQ_RS03435 PF00270 DEAD/DEAH box helicase SEQ_RS03440 PF00485 Phosphoribulokinase / Uridine kinase family SEQ_RS03455 PF13185 GAF domain SEQ_RS03460 PF12169 DNA polymerase III subunits gamma and tau domain III SEQ_RS03470 PF02237 Biotin protein ligase C terminal domain SEQ_RS03470 PF03099 Biotin/lipoate A/B protein ligase family SEQ_RS03470 PF08279 HTH domain SEQ_RS03485 PF00438 S-adenosylmethionine synthetase, N-terminal domain SEQ_RS03485 PF02772 S-adenosylmethionine synthetase, central domain SEQ_RS03485 PF02773 S-adenosylmethionine synthetase, C-terminal domain SEQ_RS03490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SEQ_RS03495 PF13276 HTH-like domain SEQ_RS03495 PF00665 Integrase core domain SEQ_RS03495 PF13333 Integrase core domain SEQ_RS03520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SEQ_RS03520 PF02837 Glycosyl hydrolases family 2, sugar binding domain SEQ_RS03520 PF00703 Glycosyl hydrolases family 2 SEQ_RS03525 PF07729 FCD domain SEQ_RS03525 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS03530 PF01081 KDPG and KHG aldolase SEQ_RS03535 PF02614 Glucuronate isomerase SEQ_RS03540 PF03786 D-mannonate dehydratase (UxuA) SEQ_RS03545 PF00106 short chain dehydrogenase SEQ_RS03555 PF00933 Glycosyl hydrolase family 3 N terminal domain SEQ_RS03560 PF01378 B domain SEQ_RS03560 PF17573 GA-like domain SEQ_RS03560 PF00746 LPXTG cell wall anchor motif SEQ_RS03570 PF07085 DRTGG domain SEQ_RS03570 PF00571 CBS domain SEQ_RS03570 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS03570 PF03061 Thioesterase superfamily SEQ_RS03575 PF00557 Metallopeptidase family M24 SEQ_RS03585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SEQ_RS03590 PF01202 Shikimate kinase SEQ_RS03595 PF03816 Cell envelope-related transcriptional attenuator domain SEQ_RS03600 PF05958 tRNA (Uracil-5-)-methyltransferase SEQ_RS03680 PF01131 DNA topoisomerase SEQ_RS03680 PF01751 Toprim domain SEQ_RS03685 PF00665 Integrase core domain SEQ_RS03685 PF13333 Integrase core domain SEQ_RS03735 PF07669 Eco57I restriction-modification methylase SEQ_RS03740 PF06616 BsuBI/PstI restriction endonuclease domain SEQ_RS03740 PF17728 BsuBI/PstI restriction endonuclease HTH domain SEQ_RS03750 PF13276 HTH-like domain SEQ_RS03750 PF13333 Integrase core domain SEQ_RS03750 PF00665 Integrase core domain SEQ_RS03770 PF13173 AAA domain SEQ_RS03770 PF13635 Domain of unknown function (DUF4143) SEQ_RS03775 PF00300 Histidine phosphatase superfamily (branch 1) SEQ_RS03785 PF04073 Aminoacyl-tRNA editing domain SEQ_RS03790 PF09515 Thiamine transporter protein (Thia_YuaJ) SEQ_RS03810 PF00255 Glutathione peroxidase SEQ_RS03820 PF00311 Phosphoenolpyruvate carboxylase SEQ_RS03825 PF01098 Cell cycle protein SEQ_RS03830 PF13333 Integrase core domain SEQ_RS03830 PF00665 Integrase core domain SEQ_RS03840 PF00664 ABC transporter transmembrane region SEQ_RS03840 PF00005 ABC transporter SEQ_RS03845 PF03412 Peptidase C39 family SEQ_RS03845 PF00005 ABC transporter SEQ_RS03845 PF00664 ABC transporter transmembrane region SEQ_RS03850 PF03462 PCRF domain SEQ_RS03850 PF00472 RF-1 domain SEQ_RS03855 PF00005 ABC transporter SEQ_RS03860 PF02687 FtsX-like permease family SEQ_RS03860 PF18075 FtsX extracellular domain SEQ_RS03865 PF00753 Metallo-beta-lactamase superfamily SEQ_RS03870 PF04851 Type III restriction enzyme, res subunit SEQ_RS03870 PF00929 Exonuclease SEQ_RS03870 PF13307 Helicase C-terminal domain SEQ_RS03870 PF00929 Exonuclease SEQ_RS03870 PF04851 Type III restriction enzyme, res subunit SEQ_RS03870 PF13307 Helicase C-terminal domain SEQ_RS03875 PF02899 Phage integrase, N-terminal SAM-like domain SEQ_RS03875 PF00589 Phage integrase family SEQ_RS03895 PF13333 Integrase core domain SEQ_RS03895 PF13276 HTH-like domain SEQ_RS03895 PF00665 Integrase core domain SEQ_RS03945 PF00436 Single-strand binding protein family SEQ_RS03970 PF01555 DNA methylase SEQ_RS03975 PF00145 C-5 cytosine-specific DNA methylase SEQ_RS04000 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SEQ_RS04035 PF00574 Clp protease SEQ_RS04130 PF01520 N-acetylmuramoyl-L-alanine amidase SEQ_RS04130 PF05257 CHAP domain SEQ_RS04130 PF08460 Bacterial SH3 domain SEQ_RS04165 PF00155 Aminotransferase class I and II SEQ_RS04170 PF00152 tRNA synthetases class II (D, K and N) SEQ_RS04170 PF01336 OB-fold nucleic acid binding domain SEQ_RS04180 PF03668 P-loop ATPase protein family SEQ_RS04185 PF01933 Uncharacterised protein family UPF0052 SEQ_RS04190 PF02650 WhiA C-terminal HTH domain SEQ_RS04190 PF14527 WhiA LAGLIDADG-like domain SEQ_RS04190 PF10298 WhiA N-terminal LAGLIDADG-like domain SEQ_RS04195 PF03577 Peptidase family C69 SEQ_RS04200 PF01297 Zinc-uptake complex component A periplasmic SEQ_RS04200 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SEQ_RS04205 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS04205 PF07702 UTRA domain SEQ_RS04210 PF01380 SIS domain SEQ_RS04215 PF01791 DeoC/LacD family aldolase SEQ_RS04220 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS04220 PF07702 UTRA domain SEQ_RS04225 PF01301 Glycosyl hydrolases family 35 SEQ_RS04230 PF13333 Integrase core domain SEQ_RS04230 PF13276 HTH-like domain SEQ_RS04230 PF00665 Integrase core domain SEQ_RS04245 PF03610 PTS system fructose IIA component SEQ_RS04245 PF03830 PTS system sorbose subfamily IIB component SEQ_RS04255 PF03613 PTS system mannose/fructose/sorbose family IID component SEQ_RS04265 PF01197 Ribosomal protein L31 SEQ_RS04270 PF02272 DHHA1 domain SEQ_RS04270 PF01368 DHH family SEQ_RS04275 PF13673 Acetyltransferase (GNAT) domain SEQ_RS04280 PF00962 Adenosine/AMP deaminase SEQ_RS04285 PF00258 Flavodoxin SEQ_RS04295 PF00654 Voltage gated chloride channel SEQ_RS04300 PF01245 Ribosomal protein L19 SEQ_RS04315 PF01381 Helix-turn-helix SEQ_RS04330 PF00268 Ribonucleotide reductase, small chain SEQ_RS04335 PF08343 Ribonucleotide reductase N-terminal SEQ_RS04335 PF00317 Ribonucleotide reductase, all-alpha domain SEQ_RS04335 PF02867 Ribonucleotide reductase, barrel domain SEQ_RS04340 PF00462 Glutaredoxin SEQ_RS04345 PF00381 PTS HPr component phosphorylation site SEQ_RS04350 PF02896 PEP-utilising enzyme, TIM barrel domain SEQ_RS04350 PF00391 PEP-utilising enzyme, mobile domain SEQ_RS04350 PF05524 PEP-utilising enzyme, N-terminal SEQ_RS04355 PF00171 Aldehyde dehydrogenase family SEQ_RS04360 PF01098 Cell cycle protein SEQ_RS04370 PF00204 DNA gyrase B SEQ_RS04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS04370 PF01751 Toprim domain SEQ_RS04370 PF00986 DNA gyrase B subunit, carboxyl terminus SEQ_RS04375 PF06160 Septation ring formation regulator, EzrA SEQ_RS04390 PF00113 Enolase, C-terminal TIM barrel domain SEQ_RS04390 PF03952 Enolase, N-terminal domain SEQ_RS04420 PF06177 QueT transporter SEQ_RS04425 PF00533 BRCA1 C Terminus (BRCT) domain SEQ_RS04425 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SEQ_RS04425 PF03120 NAD-dependent DNA ligase OB-fold domain SEQ_RS04425 PF12826 Helix-hairpin-helix motif SEQ_RS04425 PF01653 NAD-dependent DNA ligase adenylation domain SEQ_RS04430 PF00781 Diacylglycerol kinase catalytic domain SEQ_RS04435 PF17999 Pullulanase N1-terminal domain SEQ_RS04435 PF00128 Alpha amylase, catalytic domain SEQ_RS04435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SEQ_RS04445 PF00132 Bacterial transferase hexapeptide (six repeats) SEQ_RS04445 PF00483 Nucleotidyl transferase SEQ_RS04450 PF00483 Nucleotidyl transferase SEQ_RS04455 PF08323 Starch synthase catalytic domain SEQ_RS04455 PF00534 Glycosyl transferases group 1 SEQ_RS04460 PF00343 Carbohydrate phosphorylase SEQ_RS04465 PF00137 ATP synthase subunit C SEQ_RS04470 PF00119 ATP synthase A chain SEQ_RS04475 PF00430 ATP synthase B/B' CF(0) SEQ_RS04480 PF00213 ATP synthase delta (OSCP) subunit SEQ_RS04485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SEQ_RS04485 PF00306 ATP synthase alpha/beta chain, C terminal domain SEQ_RS04485 PF02874 ATP synthase alpha/beta family, beta-barrel domain SEQ_RS04490 PF00231 ATP synthase SEQ_RS04495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SEQ_RS04495 PF02874 ATP synthase alpha/beta family, beta-barrel domain SEQ_RS04500 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SEQ_RS04500 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SEQ_RS04510 PF13333 Integrase core domain SEQ_RS04510 PF00665 Integrase core domain SEQ_RS04520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SEQ_RS04525 PF11772 DNA-directed RNA polymerase subunit beta SEQ_RS04530 PF01223 DNA/RNA non-specific endonuclease SEQ_RS04535 PF01409 tRNA synthetases class II core domain (F) SEQ_RS04535 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SEQ_RS04545 PF03484 tRNA synthetase B5 domain SEQ_RS04545 PF03483 B3/4 domain SEQ_RS04545 PF03147 Ferredoxin-fold anticodon binding domain SEQ_RS04545 PF01588 Putative tRNA binding domain SEQ_RS04545 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SEQ_RS04550 PF02687 FtsX-like permease family SEQ_RS04555 PF00005 ABC transporter SEQ_RS04560 PF17573 GA-like domain SEQ_RS04560 PF01378 B domain SEQ_RS04560 PF17573 GA-like domain SEQ_RS04560 PF00746 LPXTG cell wall anchor motif SEQ_RS04560 PF00746 LPXTG cell wall anchor motif SEQ_RS04560 PF01378 B domain SEQ_RS04570 PF17802 Prealbumin-like fold domain SEQ_RS04570 PF05737 Collagen binding domain SEQ_RS04570 PF05738 Cna protein B-type domain SEQ_RS04585 PF09028 Mac 1 SEQ_RS04590 PF02370 M protein repeat SEQ_RS04590 PF00746 LPXTG cell wall anchor motif SEQ_RS04615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SEQ_RS04615 PF03714 Bacterial pullanase-associated domain SEQ_RS04615 PF00128 Alpha amylase, catalytic domain SEQ_RS04620 PF04542 Sigma-70 region 2 SEQ_RS04620 PF08281 Sigma-70, region 4 SEQ_RS04650 PF00535 Glycosyl transferase family 2 SEQ_RS04655 PF12705 PD-(D/E)XK nuclease superfamily SEQ_RS04660 PF00580 UvrD/REP helicase N-terminal domain SEQ_RS04660 PF13361 UvrD-like helicase C-terminal domain SEQ_RS04660 PF12705 PD-(D/E)XK nuclease superfamily SEQ_RS04665 PF00155 Aminotransferase class I and II SEQ_RS04670 PF00497 Bacterial extracellular solute-binding proteins, family 3 SEQ_RS04675 PF01165 Ribosomal protein S21 SEQ_RS04680 PF01741 Large-conductance mechanosensitive channel, MscL SEQ_RS04685 PF08275 DNA primase catalytic core, N-terminal domain SEQ_RS04685 PF01807 CHC2 zinc finger SEQ_RS04685 PF10410 DnaB-helicase binding domain of primase SEQ_RS04690 PF04545 Sigma-70, region 4 SEQ_RS04690 PF04539 Sigma-70 region 3 SEQ_RS04690 PF04542 Sigma-70 region 2 SEQ_RS04690 PF00140 Sigma-70 factor, region 1.2 SEQ_RS04690 PF03979 Sigma-70 factor, region 1.1 SEQ_RS04695 PF01883 Iron-sulfur cluster assembly protein SEQ_RS04700 PF04321 RmlD substrate binding domain SEQ_RS04710 PF00535 Glycosyl transferase family 2 SEQ_RS04720 PF00005 ABC transporter SEQ_RS04725 PF00535 Glycosyl transferase family 2 SEQ_RS04735 PF00535 Glycosyl transferase family 2 SEQ_RS04755 PF13439 Glycosyltransferase Family 4 SEQ_RS04755 PF00534 Glycosyl transferases group 1 SEQ_RS04760 PF00884 Sulfatase SEQ_RS04765 PF16363 GDP-mannose 4,6 dehydratase SEQ_RS04770 PF07687 Peptidase dimerisation domain SEQ_RS04770 PF01546 Peptidase family M20/M25/M40 SEQ_RS04790 PF02224 Cytidylate kinase SEQ_RS04795 PF05198 Translation initiation factor IF-3, N-terminal domain SEQ_RS04795 PF00707 Translation initiation factor IF-3, C-terminal domain SEQ_RS04800 PF01632 Ribosomal protein L35 SEQ_RS04805 PF00453 Ribosomal protein L20 SEQ_RS04815 PF00884 Sulfatase SEQ_RS04830 PF00665 Integrase core domain SEQ_RS04830 PF13333 Integrase core domain SEQ_RS04830 PF13276 HTH-like domain SEQ_RS04840 PF17785 PUA-like domain SEQ_RS04840 PF10672 S-adenosylmethionine-dependent methyltransferase SEQ_RS04845 PF01487 Type I 3-dehydroquinase SEQ_RS04850 PF01264 Chorismate synthase SEQ_RS04855 PF06133 Control of competence regulator ComK, YlbF/YmcA SEQ_RS04860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SEQ_RS04860 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS04870 PF00266 Aminotransferase class-V SEQ_RS04875 PF02926 THUMP domain SEQ_RS04875 PF02568 Thiamine biosynthesis protein (ThiI) SEQ_RS04885 PF09028 Mac 1 SEQ_RS04905 PF00005 ABC transporter SEQ_RS04910 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS04915 PF02811 PHP domain SEQ_RS04915 PF01336 OB-fold nucleic acid binding domain SEQ_RS04915 PF14579 Helix-hairpin-helix motif SEQ_RS04915 PF07733 Bacterial DNA polymerase III alpha NTPase domain SEQ_RS04915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SEQ_RS04925 PF13333 Integrase core domain SEQ_RS04925 PF13276 HTH-like domain SEQ_RS04925 PF00665 Integrase core domain SEQ_RS04940 PF00365 Phosphofructokinase SEQ_RS04945 PF02887 Pyruvate kinase, alpha/beta domain SEQ_RS04945 PF00224 Pyruvate kinase, barrel domain SEQ_RS04950 PF10502 Signal peptidase, peptidase S26 SEQ_RS04955 PF01380 SIS domain SEQ_RS04960 PF08274 PhnA Zinc-Ribbon SEQ_RS04960 PF03831 PhnA domain SEQ_RS04965 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS04970 PF00005 ABC transporter SEQ_RS04975 PF00497 Bacterial extracellular solute-binding proteins, family 3 SEQ_RS04980 PF01545 Cation efflux family SEQ_RS04980 PF16916 Dimerisation domain of Zinc Transporter SEQ_RS04985 PF01235 Sodium:alanine symporter family SEQ_RS04990 PF00580 UvrD/REP helicase N-terminal domain SEQ_RS04990 PF13361 UvrD-like helicase C-terminal domain SEQ_RS05010 PF03780 Asp23 family, cell envelope-related function SEQ_RS05020 PF03780 Asp23 family, cell envelope-related function SEQ_RS05035 PF12704 MacB-like periplasmic core domain SEQ_RS05035 PF00005 ABC transporter SEQ_RS05035 PF02687 FtsX-like permease family SEQ_RS05065 PF01509 TruB family pseudouridylate synthase (N terminal domain) SEQ_RS05065 PF16198 tRNA pseudouridylate synthase B C-terminal domain SEQ_RS05070 PF06574 FAD synthetase SEQ_RS05070 PF01687 Riboflavin kinase SEQ_RS05075 PF03960 ArsC family SEQ_RS05080 PF05256 Uncharacterised protein family (UPF0223) SEQ_RS05085 PF00459 Inositol monophosphatase family SEQ_RS05090 PF17126 RsmF rRNA methyltransferase first C-terminal domain SEQ_RS05090 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SEQ_RS05090 PF01189 16S rRNA methyltransferase RsmB/F SEQ_RS05095 PF12849 PBP superfamily domain SEQ_RS05100 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS05105 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS05110 PF00005 ABC transporter SEQ_RS05115 PF00005 ABC transporter SEQ_RS05120 PF01895 PhoU domain SEQ_RS05125 PF01433 Peptidase family M1 domain SEQ_RS05125 PF11838 ERAP1-like C-terminal domain SEQ_RS05130 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS05130 PF00072 Response regulator receiver domain SEQ_RS05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS05135 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS05160 PF01649 Ribosomal protein S20 SEQ_RS05165 PF00485 Phosphoribulokinase / Uridine kinase family SEQ_RS05170 PF05175 Methyltransferase small domain SEQ_RS05175 PF02885 Glycosyl transferase family, helical bundle domain SEQ_RS05175 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SEQ_RS05175 PF00591 Glycosyl transferase family, a/b domain SEQ_RS05180 PF01791 DeoC/LacD family aldolase SEQ_RS05185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SEQ_RS05190 PF02608 ABC transporter substrate-binding protein PnrA-like SEQ_RS05195 PF00005 ABC transporter SEQ_RS05200 PF02653 Branched-chain amino acid transport system / permease component SEQ_RS05210 PF13683 Integrase core domain SEQ_RS05210 PF01610 Transposase SEQ_RS05215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SEQ_RS05215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SEQ_RS05215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SEQ_RS05215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SEQ_RS05225 PF13333 Integrase core domain SEQ_RS05225 PF00665 Integrase core domain SEQ_RS05225 PF13276 HTH-like domain SEQ_RS05240 PF12822 ECF transporter, substrate-specific component SEQ_RS05245 PF02441 Flavoprotein SEQ_RS05255 PF01268 Formate--tetrahydrofolate ligase SEQ_RS05270 PF13091 PLD-like domain SEQ_RS05280 PF01118 Semialdehyde dehydrogenase, NAD binding domain SEQ_RS05280 PF02774 Semialdehyde dehydrogenase, dimerisation domain SEQ_RS05285 PF13597 Anaerobic ribonucleoside-triphosphate reductase SEQ_RS05285 PF03477 ATP cone domain SEQ_RS05290 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS05290 PF00155 Aminotransferase class I and II SEQ_RS05305 PF00005 ABC transporter SEQ_RS05305 PF12848 ABC transporter SEQ_RS05320 PF03006 Haemolysin-III related SEQ_RS05330 PF13649 Methyltransferase domain SEQ_RS05355 PF00005 ABC transporter SEQ_RS05355 PF13732 Domain of unknown function (DUF4162) SEQ_RS05365 PF13276 HTH-like domain SEQ_RS05365 PF13333 Integrase core domain SEQ_RS05365 PF00665 Integrase core domain SEQ_RS05385 PF00664 ABC transporter transmembrane region SEQ_RS05385 PF00005 ABC transporter SEQ_RS05390 PF10509 Galactokinase galactose-binding signature SEQ_RS05390 PF08544 GHMP kinases C terminal SEQ_RS05390 PF00288 GHMP kinases N terminal domain SEQ_RS05400 PF08544 GHMP kinases C terminal SEQ_RS05400 PF00288 GHMP kinases N terminal domain SEQ_RS05405 PF01070 FMN-dependent dehydrogenase SEQ_RS05410 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SEQ_RS05415 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SEQ_RS05415 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SEQ_RS05420 PF00303 Thymidylate synthase SEQ_RS05425 PF00186 Dihydrofolate reductase SEQ_RS05435 PF06689 ClpX C4-type zinc finger SEQ_RS05435 PF10431 C-terminal, D2-small domain, of ClpB protein SEQ_RS05435 PF07724 AAA domain (Cdc48 subfamily) SEQ_RS05440 PF01926 50S ribosome-binding GTPase SEQ_RS05450 PF00004 ATPase family associated with various cellular activities (AAA) SEQ_RS05450 PF07724 AAA domain (Cdc48 subfamily) SEQ_RS05450 PF17871 AAA lid domain SEQ_RS05450 PF10431 C-terminal, D2-small domain, of ClpB protein SEQ_RS05455 PF00334 Nucleoside diphosphate kinase SEQ_RS05465 PF01522 Polysaccharide deacetylase SEQ_RS05470 PF03447 Homoserine dehydrogenase, NAD binding domain SEQ_RS05470 PF00742 Homoserine dehydrogenase SEQ_RS05475 PF00288 GHMP kinases N terminal domain SEQ_RS05475 PF08544 GHMP kinases C terminal SEQ_RS05480 PF02875 Mur ligase family, glutamate ligase domain SEQ_RS05480 PF08245 Mur ligase middle domain SEQ_RS05485 PF01227 GTP cyclohydrolase I SEQ_RS05490 PF00809 Pterin binding enzyme SEQ_RS05495 PF02152 Dihydroneopterin aldolase SEQ_RS05500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SEQ_RS05505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SEQ_RS05505 PF01565 FAD binding domain SEQ_RS05510 PF00005 ABC transporter SEQ_RS05510 PF08402 TOBE domain SEQ_RS05515 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS05520 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS05525 PF13416 Bacterial extracellular solute-binding protein SEQ_RS05530 PF00654 Voltage gated chloride channel SEQ_RS05540 PF01594 AI-2E family transporter SEQ_RS05545 PF04002 RadC-like JAB domain SEQ_RS05550 PF07722 Peptidase C26 SEQ_RS05555 PF06971 Putative DNA-binding protein N-terminus SEQ_RS05555 PF02629 CoA binding domain SEQ_RS05565 PF00266 Aminotransferase class-V SEQ_RS05570 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SEQ_RS05570 PF14572 Phosphoribosyl synthetase-associated domain SEQ_RS05580 PF04607 Region found in RelA / SpoT proteins SEQ_RS05585 PF01513 ATP-NAD kinase SEQ_RS05590 PF00849 RNA pseudouridylate synthase SEQ_RS05595 PF01515 Phosphate acetyl/butaryl transferase SEQ_RS05600 PF00106 short chain dehydrogenase SEQ_RS05620 PF00478 IMP dehydrogenase / GMP reductase domain SEQ_RS05625 PF00156 Phosphoribosyl transferase domain SEQ_RS05630 PF02424 ApbE family SEQ_RS05635 PF13333 Integrase core domain SEQ_RS05635 PF00665 Integrase core domain SEQ_RS05635 PF13276 HTH-like domain SEQ_RS05650 PF01361 Tautomerase enzyme SEQ_RS05655 PF00265 Thymidine kinase SEQ_RS05660 PF03462 PCRF domain SEQ_RS05660 PF00472 RF-1 domain SEQ_RS05665 PF05175 Methyltransferase small domain SEQ_RS05670 PF03481 Putative GTP-binding controlling metal-binding SEQ_RS05670 PF01300 Telomere recombination SEQ_RS05680 PF00464 Serine hydroxymethyltransferase SEQ_RS05695 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS05695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SEQ_RS05700 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SEQ_RS05700 PF00056 lactate/malate dehydrogenase, NAD binding domain SEQ_RS05705 PF03989 DNA gyrase C-terminal domain, beta-propeller SEQ_RS05705 PF00521 DNA gyrase/topoisomerase IV, subunit A SEQ_RS05710 PF04203 Sortase domain SEQ_RS05715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SEQ_RS05720 PF01297 Zinc-uptake complex component A periplasmic SEQ_RS05740 PF00448 SRP54-type protein, GTPase domain SEQ_RS05740 PF02881 SRP54-type protein, helical bundle domain SEQ_RS05740 PF02978 Signal peptide binding domain SEQ_RS05745 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SEQ_RS05750 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS05750 PF07702 UTRA domain SEQ_RS05755 PF00117 Glutamine amidotransferase class-I SEQ_RS05755 PF02540 NAD synthase SEQ_RS05755 PF00958 GMP synthase C terminal domain SEQ_RS05765 PF01381 Helix-turn-helix SEQ_RS05775 PF13495 Phage integrase, N-terminal SAM-like domain SEQ_RS05775 PF00589 Phage integrase family SEQ_RS05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS05785 PF00072 Response regulator receiver domain SEQ_RS05785 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS05800 PF00665 Integrase core domain SEQ_RS05800 PF13333 Integrase core domain SEQ_RS05800 PF13276 HTH-like domain SEQ_RS05810 PF00005 ABC transporter SEQ_RS05825 PF13683 Integrase core domain SEQ_RS05825 PF01610 Transposase SEQ_RS05830 PF02436 Conserved carboxylase domain SEQ_RS05830 PF00364 Biotin-requiring enzyme SEQ_RS05830 PF00682 HMGL-like SEQ_RS05835 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SEQ_RS05840 PF04223 Citrate lyase, alpha subunit (CitF) SEQ_RS05845 PF03328 HpcH/HpaI aldolase/citrate lyase family SEQ_RS05850 PF06857 Malonate decarboxylase delta subunit (MdcD) SEQ_RS05860 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SEQ_RS05865 PF00364 Biotin-requiring enzyme SEQ_RS05875 PF03600 Citrate transporter SEQ_RS05885 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SEQ_RS05895 PF08218 Citrate lyase ligase C-terminal domain SEQ_RS05900 PF13276 HTH-like domain SEQ_RS05900 PF00665 Integrase core domain SEQ_RS05900 PF13333 Integrase core domain SEQ_RS05915 PF01610 Transposase SEQ_RS05915 PF13683 Integrase core domain SEQ_RS05920 PF01134 Glucose inhibited division protein A SEQ_RS05935 PF01396 Topoisomerase DNA binding C4 zinc finger SEQ_RS05935 PF01751 Toprim domain SEQ_RS05935 PF01131 DNA topoisomerase SEQ_RS05940 PF02481 DNA recombination-mediator protein A SEQ_RS05940 PF18255 DNA processing protein A sterile alpha motif domain SEQ_RS05945 PF01351 Ribonuclease HII SEQ_RS05950 PF01926 50S ribosome-binding GTPase SEQ_RS05975 PF13276 HTH-like domain SEQ_RS05975 PF13333 Integrase core domain SEQ_RS05975 PF00665 Integrase core domain SEQ_RS06010 PF00005 ABC transporter SEQ_RS06010 PF00664 ABC transporter transmembrane region SEQ_RS06015 PF00005 ABC transporter SEQ_RS06015 PF00664 ABC transporter transmembrane region SEQ_RS06020 PF00005 ABC transporter SEQ_RS06045 PF00550 Phosphopantetheine attachment site SEQ_RS06045 PF08242 Methyltransferase domain SEQ_RS06045 PF00501 AMP-binding enzyme SEQ_RS06045 PF00668 Condensation domain SEQ_RS06050 PF13193 AMP-binding enzyme C-terminal domain SEQ_RS06050 PF00501 AMP-binding enzyme SEQ_RS06060 PF00975 Thioesterase domain SEQ_RS06075 PF03432 Relaxase/Mobilisation nuclease domain SEQ_RS06105 PF01131 DNA topoisomerase SEQ_RS06105 PF01751 Toprim domain SEQ_RS06135 PF01555 DNA methylase SEQ_RS06170 PF02687 FtsX-like permease family SEQ_RS06170 PF00005 ABC transporter SEQ_RS06170 PF12704 MacB-like periplasmic core domain SEQ_RS06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS06185 PF00072 Response regulator receiver domain SEQ_RS06185 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS06185 PF09308 LuxQ, periplasmic SEQ_RS06195 PF02195 ParB-like nuclease domain SEQ_RS06195 PF17762 HTH domain found in ParB protein SEQ_RS06200 PF13614 AAA domain SEQ_RS06205 PF00664 ABC transporter transmembrane region SEQ_RS06205 PF00005 ABC transporter SEQ_RS06210 PF00664 ABC transporter transmembrane region SEQ_RS06210 PF00005 ABC transporter SEQ_RS06215 PF02872 5'-nucleotidase, C-terminal domain SEQ_RS06215 PF00149 Calcineurin-like phosphoesterase SEQ_RS06215 PF17936 Bacterial Ig domain SEQ_RS06220 PF01327 Polypeptide deformylase SEQ_RS06225 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SEQ_RS06225 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SEQ_RS06235 PF00005 ABC transporter SEQ_RS06235 PF00664 ABC transporter transmembrane region SEQ_RS06245 PF01743 Poly A polymerase head domain SEQ_RS06245 PF12627 Probable RNA and SrmB- binding site of polymerase A SEQ_RS06245 PF13735 tRNA nucleotidyltransferase domain 2 putative SEQ_RS06250 PF02645 Uncharacterised protein, DegV family COG1307 SEQ_RS06260 PF00665 Integrase core domain SEQ_RS06260 PF13333 Integrase core domain SEQ_RS06270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SEQ_RS06270 PF01476 LysM domain SEQ_RS06295 PF01381 Helix-turn-helix SEQ_RS06300 PF01797 Transposase IS200 like SEQ_RS06305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SEQ_RS06305 PF01476 LysM domain SEQ_RS06310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SEQ_RS06310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS06315 PF00294 pfkB family carbohydrate kinase SEQ_RS06320 PF08220 DeoR-like helix-turn-helix domain SEQ_RS06320 PF00455 DeoR C terminal sensor domain SEQ_RS06325 PF08546 Ketopantoate reductase PanE/ApbA C terminal SEQ_RS06325 PF02558 Ketopantoate reductase PanE/ApbA SEQ_RS06335 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS06340 PF01746 tRNA (Guanine-1)-methyltransferase SEQ_RS06345 PF01782 RimM N-terminal domain SEQ_RS06345 PF05239 PRC-barrel domain SEQ_RS06360 PF00886 Ribosomal protein S16 SEQ_RS06370 PF02687 FtsX-like permease family SEQ_RS06370 PF12704 MacB-like periplasmic core domain SEQ_RS06375 PF00005 ABC transporter SEQ_RS06380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SEQ_RS06385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SEQ_RS06385 PF02142 MGS-like domain SEQ_RS06385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SEQ_RS06390 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SEQ_RS06390 PF00117 Glutamine amidotransferase class-I SEQ_RS06395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SEQ_RS06395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SEQ_RS06400 PF00860 Permease family SEQ_RS06405 PF00156 Phosphoribosyl transferase domain SEQ_RS06415 PF00849 RNA pseudouridylate synthase SEQ_RS06415 PF01479 S4 domain SEQ_RS06420 PF01252 Signal peptidase (SPase) II SEQ_RS06425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SEQ_RS06425 PF03466 LysR substrate binding domain SEQ_RS06430 PF01016 Ribosomal L27 protein SEQ_RS06440 PF00829 Ribosomal prokaryotic L21 protein SEQ_RS06445 PF09587 Bacterial capsule synthesis protein PGA_cap SEQ_RS06470 PF00665 Integrase core domain SEQ_RS06470 PF13333 Integrase core domain SEQ_RS06490 PF13683 Integrase core domain SEQ_RS06490 PF01610 Transposase SEQ_RS06495 PF00575 S1 RNA binding domain SEQ_RS06515 PF01063 Amino-transferase class IV SEQ_RS06520 PF00521 DNA gyrase/topoisomerase IV, subunit A SEQ_RS06520 PF03989 DNA gyrase C-terminal domain, beta-propeller SEQ_RS06530 PF00986 DNA gyrase B subunit, carboxyl terminus SEQ_RS06530 PF01751 Toprim domain SEQ_RS06530 PF00204 DNA gyrase B SEQ_RS06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS06535 PF02660 Glycerol-3-phosphate acyltransferase SEQ_RS06540 PF01979 Amidohydrolase family SEQ_RS06545 PF03167 Uracil DNA glycosylase superfamily SEQ_RS06555 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS06560 PF00497 Bacterial extracellular solute-binding proteins, family 3 SEQ_RS06565 PF01425 Amidase SEQ_RS06575 PF00156 Phosphoribosyl transferase domain SEQ_RS06580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SEQ_RS06590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SEQ_RS06590 PF03466 LysR substrate binding domain SEQ_RS06600 PF01048 Phosphorylase superfamily SEQ_RS06605 PF01676 Metalloenzyme superfamily SEQ_RS06610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SEQ_RS06655 PF10396 GTP-binding protein TrmE N-terminus SEQ_RS06655 PF12631 MnmE helical domain SEQ_RS06655 PF01926 50S ribosome-binding GTPase SEQ_RS06660 PF01546 Peptidase family M20/M25/M40 SEQ_RS06665 PF00881 Nitroreductase family SEQ_RS06670 PF08459 UvrC Helix-hairpin-helix N-terminal SEQ_RS06670 PF01541 GIY-YIG catalytic domain SEQ_RS06670 PF02151 UvrB/uvrC motif SEQ_RS06680 PF12833 Helix-turn-helix domain SEQ_RS06680 PF00072 Response regulator receiver domain SEQ_RS06685 PF06580 Histidine kinase SEQ_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS06690 PF03613 PTS system mannose/fructose/sorbose family IID component SEQ_RS06695 PF03609 PTS system sorbose-specific iic component SEQ_RS06700 PF03830 PTS system sorbose subfamily IIB component SEQ_RS06710 PF03601 Conserved hypothetical protein 698 SEQ_RS06715 PF01641 SelR domain SEQ_RS06720 PF00009 Elongation factor Tu GTP binding domain SEQ_RS06720 PF03144 Elongation factor Tu domain 2 SEQ_RS06720 PF00679 Elongation factor G C-terminus SEQ_RS06720 PF14492 Elongation Factor G, domain II SEQ_RS06720 PF06421 GTP-binding protein LepA C-terminus SEQ_RS06740 PF01721 Class II bacteriocin SEQ_RS06745 PF00005 ABC transporter SEQ_RS06745 PF03412 Peptidase C39 family SEQ_RS06745 PF00664 ABC transporter transmembrane region SEQ_RS06775 PF01797 Transposase IS200 like SEQ_RS06780 PF00542 Ribosomal protein L7/L12 C-terminal domain SEQ_RS06780 PF16320 Ribosomal protein L7/L12 dimerisation domain SEQ_RS06785 PF00466 Ribosomal protein L10 SEQ_RS06795 PF13344 Haloacid dehalogenase-like hydrolase SEQ_RS06805 PF04055 Radical SAM superfamily SEQ_RS06805 PF06969 HemN C-terminal domain SEQ_RS06815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SEQ_RS06815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SEQ_RS06815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SEQ_RS06815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SEQ_RS06825 PF02457 DisA bacterial checkpoint controller nucleotide-binding SEQ_RS06830 PF08245 Mur ligase middle domain SEQ_RS06830 PF08353 Domain of unknown function (DUF1727) SEQ_RS06835 PF07685 CobB/CobQ-like glutamine amidotransferase domain SEQ_RS06840 PF10437 Bacterial lipoate protein ligase C-terminus SEQ_RS06840 PF03099 Biotin/lipoate A/B protein ligase family SEQ_RS06845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SEQ_RS06845 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS06850 PF02817 e3 binding domain SEQ_RS06850 PF00364 Biotin-requiring enzyme SEQ_RS06850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SEQ_RS06855 PF02780 Transketolase, C-terminal domain SEQ_RS06855 PF02779 Transketolase, pyrimidine binding domain SEQ_RS06855 PF00364 Biotin-requiring enzyme SEQ_RS06860 PF00676 Dehydrogenase E1 component SEQ_RS06865 PF16326 ABC transporter C-terminal domain SEQ_RS06865 PF00005 ABC transporter SEQ_RS06865 PF12848 ABC transporter SEQ_RS06870 PF00756 Putative esterase SEQ_RS06875 PF17770 Ribonuclease J C-terminal domain SEQ_RS06875 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SEQ_RS06875 PF00753 Metallo-beta-lactamase superfamily SEQ_RS06880 PF00005 ABC transporter SEQ_RS06895 PF05670 NFACT protein RNA binding domain SEQ_RS06905 PF01594 AI-2E family transporter SEQ_RS06910 PF00293 NUDIX domain SEQ_RS06915 PF16363 GDP-mannose 4,6 dehydratase SEQ_RS06920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SEQ_RS06925 PF00483 Nucleotidyl transferase SEQ_RS06930 PF01266 FAD dependent oxidoreductase SEQ_RS06935 PF01784 NIF3 (NGG1p interacting factor 3) SEQ_RS06940 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SEQ_RS06945 PF00730 HhH-GPD superfamily base excision DNA repair protein SEQ_RS06945 PF10576 Iron-sulfur binding domain of endonuclease III SEQ_RS06945 PF00633 Helix-hairpin-helix motif SEQ_RS06955 PF00156 Phosphoribosyl transferase domain SEQ_RS06965 PF17768 RecJ OB domain SEQ_RS06965 PF02272 DHHA1 domain SEQ_RS06965 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SEQ_RS06965 PF01368 DHH family SEQ_RS06970 PF00106 short chain dehydrogenase SEQ_RS06975 PF00753 Metallo-beta-lactamase superfamily SEQ_RS06975 PF12706 Beta-lactamase superfamily domain SEQ_RS06980 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SEQ_RS06980 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SEQ_RS06985 PF01926 50S ribosome-binding GTPase SEQ_RS06985 PF13167 GTP-binding GTPase N-terminal SEQ_RS06985 PF16360 GTP-binding GTPase Middle Region SEQ_RS07000 PF00343 Carbohydrate phosphorylase SEQ_RS07005 PF02446 4-alpha-glucanotransferase SEQ_RS07010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SEQ_RS07010 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS07020 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07035 PF00665 Integrase core domain SEQ_RS07035 PF13276 HTH-like domain SEQ_RS07035 PF13333 Integrase core domain SEQ_RS07045 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07050 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07055 PF01833 IPT/TIG domain SEQ_RS07055 PF00686 Starch binding domain SEQ_RS07055 PF00128 Alpha amylase, catalytic domain SEQ_RS07060 PF02903 Alpha amylase, N-terminal ig-like domain SEQ_RS07060 PF00128 Alpha amylase, catalytic domain SEQ_RS07065 PF13416 Bacterial extracellular solute-binding protein SEQ_RS07070 PF00934 PE family SEQ_RS07070 PF07859 alpha/beta hydrolase fold SEQ_RS07075 PF04914 DltD protein SEQ_RS07080 PF00550 Phosphopantetheine attachment site SEQ_RS07085 PF03062 MBOAT, membrane-bound O-acyltransferase family SEQ_RS07090 PF00501 AMP-binding enzyme SEQ_RS07090 PF13193 AMP-binding enzyme C-terminal domain SEQ_RS07100 PF17757 UvrB interaction domain SEQ_RS07100 PF02151 UvrB/uvrC motif SEQ_RS07100 PF04851 Type III restriction enzyme, res subunit SEQ_RS07100 PF00271 Helicase conserved C-terminal domain SEQ_RS07100 PF12344 Ultra-violet resistance protein B SEQ_RS07105 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07110 PF00005 ABC transporter SEQ_RS07115 PF02378 Phosphotransferase system, EIIC SEQ_RS07125 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SEQ_RS07130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS07135 PF05043 Mga helix-turn-helix domain SEQ_RS07135 PF00874 PRD domain SEQ_RS07135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SEQ_RS07135 PF08279 HTH domain SEQ_RS07145 PF00232 Glycosyl hydrolase family 1 SEQ_RS07160 PF01926 50S ribosome-binding GTPase SEQ_RS07160 PF01018 GTP1/OBG SEQ_RS07160 PF09269 Domain of unknown function (DUF1967) SEQ_RS07165 PF02073 Thermophilic metalloprotease (M29) SEQ_RS07165 PF02073 Thermophilic metalloprotease (M29) SEQ_RS07170 PF00849 RNA pseudouridylate synthase SEQ_RS07170 PF01479 S4 domain SEQ_RS07180 PF07690 Major Facilitator Superfamily SEQ_RS07185 PF08903 Domain of unknown function (DUF1846) SEQ_RS07200 PF13419 Haloacid dehalogenase-like hydrolase SEQ_RS07215 PF00665 Integrase core domain SEQ_RS07215 PF13276 HTH-like domain SEQ_RS07215 PF13333 Integrase core domain SEQ_RS07225 PF01081 KDPG and KHG aldolase SEQ_RS07230 PF00294 pfkB family carbohydrate kinase SEQ_RS07250 PF07470 Glycosyl Hydrolase Family 88 SEQ_RS07255 PF03830 PTS system sorbose subfamily IIB component SEQ_RS07260 PF03609 PTS system sorbose-specific iic component SEQ_RS07265 PF03613 PTS system mannose/fructose/sorbose family IID component SEQ_RS07270 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS07300 PF00689 Cation transporting ATPase, C-terminus SEQ_RS07300 PF00690 Cation transporter/ATPase, N-terminus SEQ_RS07310 PF01966 HD domain SEQ_RS07320 PF02388 FemAB family SEQ_RS07330 PF00121 Triosephosphate isomerase SEQ_RS07335 PF03143 Elongation factor Tu C-terminal domain SEQ_RS07335 PF03144 Elongation factor Tu domain 2 SEQ_RS07335 PF00009 Elongation factor Tu GTP binding domain SEQ_RS07405 PF13333 Integrase core domain SEQ_RS07405 PF00665 Integrase core domain SEQ_RS07405 PF13276 HTH-like domain SEQ_RS07425 PF01336 OB-fold nucleic acid binding domain SEQ_RS07425 PF00152 tRNA synthetases class II (D, K and N) SEQ_RS07435 PF02229 Transcriptional Coactivator p15 (PC4) SEQ_RS07445 PF01136 Peptidase family U32 SEQ_RS07445 PF16325 Peptidase family U32 C-terminal domain SEQ_RS07465 PF12732 YtxH-like protein SEQ_RS07475 PF01790 Prolipoprotein diacylglyceryl transferase SEQ_RS07480 PF02603 HPr Serine kinase N terminus SEQ_RS07480 PF07475 HPr Serine kinase C-terminal domain SEQ_RS07490 PF10263 SprT-like family SEQ_RS07495 PF17674 HHH domain SEQ_RS07495 PF16921 Tex protein YqgF-like domain SEQ_RS07495 PF09371 Tex-like protein N-terminal domain SEQ_RS07495 PF00575 S1 RNA binding domain SEQ_RS07505 PF00005 ABC transporter SEQ_RS07510 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07515 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07520 PF12849 PBP superfamily domain SEQ_RS07525 PF16736 Single Cache-like SEQ_RS07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS07525 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS07525 PF00989 PAS fold SEQ_RS07530 PF00072 Response regulator receiver domain SEQ_RS07530 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS07540 PF03773 Predicted permease SEQ_RS07545 PF09323 Domain of unknown function (DUF1980) SEQ_RS07550 PF00232 Glycosyl hydrolase family 1 SEQ_RS07555 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SEQ_RS07555 PF02378 Phosphotransferase system, EIIC SEQ_RS07555 PF00367 phosphotransferase system, EIIB SEQ_RS07560 PF00874 PRD domain SEQ_RS07560 PF03123 CAT RNA binding domain SEQ_RS07565 PF00448 SRP54-type protein, GTPase domain SEQ_RS07565 PF02881 SRP54-type protein, helical bundle domain SEQ_RS07585 PF00005 ABC transporter SEQ_RS07615 PF06470 SMC proteins Flexible Hinge Domain SEQ_RS07615 PF02463 RecF/RecN/SMC N terminal domain SEQ_RS07620 PF00035 Double-stranded RNA binding motif SEQ_RS07620 PF14622 Ribonuclease-III-like SEQ_RS07640 PF02980 Restriction endonuclease FokI, catalytic domain SEQ_RS07640 PF16902 Type-2 restriction enzyme D3 domain SEQ_RS07640 PF02981 Restriction endonuclease FokI, recognition domain SEQ_RS07640 PF09254 Restriction endonuclease FokI, C terminal SEQ_RS07645 PF13333 Integrase core domain SEQ_RS07645 PF13276 HTH-like domain SEQ_RS07645 PF00665 Integrase core domain SEQ_RS07655 PF00753 Metallo-beta-lactamase superfamily SEQ_RS07660 PF13426 PAS domain SEQ_RS07660 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS07660 PF00672 HAMP domain SEQ_RS07665 PF00072 Response regulator receiver domain SEQ_RS07665 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS07680 PF00108 Thiolase, N-terminal domain SEQ_RS07680 PF02803 Thiolase, C-terminal domain SEQ_RS07695 PF13333 Integrase core domain SEQ_RS07695 PF13276 HTH-like domain SEQ_RS07695 PF00665 Integrase core domain SEQ_RS07700 PF00005 ABC transporter SEQ_RS07705 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS07710 PF00072 Response regulator receiver domain SEQ_RS07710 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS07715 PF00082 Subtilase family SEQ_RS07725 PF03129 Anticodon binding domain SEQ_RS07725 PF02824 TGS domain SEQ_RS07725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SEQ_RS07725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SEQ_RS07730 PF00534 Glycosyl transferases group 1 SEQ_RS07730 PF13439 Glycosyltransferase Family 4 SEQ_RS07735 PF00534 Glycosyl transferases group 1 SEQ_RS07735 PF13439 Glycosyltransferase Family 4 SEQ_RS07740 PF00128 Alpha amylase, catalytic domain SEQ_RS07740 PF09154 Domain of unknown function (DUF1939) SEQ_RS07745 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS07750 PF01321 Creatinase/Prolidase N-terminal domain SEQ_RS07750 PF00557 Metallopeptidase family M24 SEQ_RS07760 PF00664 ABC transporter transmembrane region SEQ_RS07760 PF00005 ABC transporter SEQ_RS07760 PF03412 Peptidase C39 family SEQ_RS07770 PF00881 Nitroreductase family SEQ_RS07775 PF00535 Glycosyl transferase family 2 SEQ_RS07780 PF01668 SmpB protein SEQ_RS07785 PF00575 S1 RNA binding domain SEQ_RS07785 PF00773 RNB domain SEQ_RS07785 PF08206 Ribonuclease B OB domain SEQ_RS07785 PF17876 Cold shock domain SEQ_RS07805 PF01121 Dephospho-CoA kinase SEQ_RS07810 PF06827 Zinc finger found in FPG and IleRS SEQ_RS07810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SEQ_RS07810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SEQ_RS07815 PF01301 Glycosyl hydrolases family 35 SEQ_RS07820 PF04650 YSIRK type signal peptide SEQ_RS07820 PF02973 Sialidase, N-terminal domain SEQ_RS07820 PF13088 BNR repeat-like domain SEQ_RS07830 PF02378 Phosphotransferase system, EIIC SEQ_RS07835 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SEQ_RS07840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS07850 PF00480 ROK family SEQ_RS07855 PF13344 Haloacid dehalogenase-like hydrolase SEQ_RS07855 PF00293 NUDIX domain SEQ_RS07870 PF13276 HTH-like domain SEQ_RS07870 PF13333 Integrase core domain SEQ_RS07870 PF00665 Integrase core domain SEQ_RS07885 PF01144 Coenzyme A transferase SEQ_RS07890 PF01144 Coenzyme A transferase SEQ_RS07895 PF00108 Thiolase, N-terminal domain SEQ_RS07895 PF02803 Thiolase, C-terminal domain SEQ_RS07900 PF03466 LysR substrate binding domain SEQ_RS07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SEQ_RS07910 PF13732 Domain of unknown function (DUF4162) SEQ_RS07910 PF00005 ABC transporter SEQ_RS07920 PF01926 50S ribosome-binding GTPase SEQ_RS07920 PF07650 KH domain SEQ_RS07925 PF01219 Prokaryotic diacylglycerol kinase SEQ_RS07930 PF02130 Uncharacterized protein family UPF0054 SEQ_RS07940 PF03167 Uracil DNA glycosylase superfamily SEQ_RS07945 PF02562 PhoH-like protein SEQ_RS07950 PF06855 YozE SAM-like fold SEQ_RS07955 PF01625 Peptide methionine sulfoxide reductase SEQ_RS07965 PF01765 Ribosome recycling factor SEQ_RS07970 PF00696 Amino acid kinase family SEQ_RS07975 PF00005 ABC transporter SEQ_RS07980 PF00005 ABC transporter SEQ_RS07985 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07990 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS07995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SEQ_RS08005 PF00687 Ribosomal protein L1p/L10e family SEQ_RS08010 PF00298 Ribosomal protein L11, RNA binding domain SEQ_RS08010 PF03946 Ribosomal protein L11, N-terminal domain SEQ_RS08015 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS08030 PF01580 FtsK/SpoIIIE family SEQ_RS08030 PF17854 FtsK alpha domain SEQ_RS08030 PF09397 Ftsk gamma domain SEQ_RS08035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SEQ_RS08040 PF00950 ABC 3 transport family SEQ_RS08045 PF00005 ABC transporter SEQ_RS08050 PF01297 Zinc-uptake complex component A periplasmic SEQ_RS08060 PF01048 Phosphorylase superfamily SEQ_RS08070 PF00293 NUDIX domain SEQ_RS08075 PF00132 Bacterial transferase hexapeptide (six repeats) SEQ_RS08075 PF12804 MobA-like NTP transferase domain SEQ_RS08080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SEQ_RS08080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SEQ_RS08110 PF10458 Valyl tRNA synthetase tRNA binding arm SEQ_RS08110 PF08264 Anticodon-binding domain of tRNA SEQ_RS08110 PF00133 tRNA synthetases class I (I, L, M and V) SEQ_RS08120 PF13302 Acetyltransferase (GNAT) domain SEQ_RS08145 PF01817 Chorismate mutase type II SEQ_RS08145 PF00793 DAHP synthetase I family SEQ_RS08150 PF01761 3-dehydroquinate synthase SEQ_RS08160 PF08501 Shikimate dehydrogenase substrate binding domain SEQ_RS08160 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SEQ_RS08165 PF00703 Glycosyl hydrolases family 2 SEQ_RS08165 PF02837 Glycosyl hydrolases family 2, sugar binding domain SEQ_RS08165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SEQ_RS08165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SEQ_RS08165 PF16355 Domain of unknown function (DUF4982) SEQ_RS08170 PF00072 Response regulator receiver domain SEQ_RS08170 PF12833 Helix-turn-helix domain SEQ_RS08175 PF02743 Cache domain SEQ_RS08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS08175 PF06580 Histidine kinase SEQ_RS08175 PF00672 HAMP domain SEQ_RS08185 PF12010 Domain of unknown function (DUF3502) SEQ_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS08195 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS08200 PF00480 ROK family SEQ_RS08210 PF00232 Glycosyl hydrolase family 1 SEQ_RS08215 PF07555 beta-N-acetylglucosaminidase SEQ_RS08215 PF00963 Cohesin domain SEQ_RS08215 PF00041 Fibronectin type III domain SEQ_RS08215 PF00754 F5/8 type C domain SEQ_RS08215 PF02838 Glycosyl hydrolase family 20, domain 2 SEQ_RS08220 PF00392 Bacterial regulatory proteins, gntR family SEQ_RS08230 PF07748 Glycosyl hydrolases family 38 C-terminal domain SEQ_RS08230 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SEQ_RS08230 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SEQ_RS08230 PF09261 Alpha mannosidase middle domain SEQ_RS08230 PF01074 Glycosyl hydrolases family 38 N-terminal domain SEQ_RS08235 PF00005 ABC transporter SEQ_RS08250 PF00583 Acetyltransferase (GNAT) family SEQ_RS08260 PF00665 Integrase core domain SEQ_RS08260 PF13333 Integrase core domain SEQ_RS08260 PF13276 HTH-like domain SEQ_RS08290 PF00664 ABC transporter transmembrane region SEQ_RS08290 PF03412 Peptidase C39 family SEQ_RS08290 PF00005 ABC transporter SEQ_RS08305 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SEQ_RS08305 PF17203 Single cache domain 3 SEQ_RS08305 PF00989 PAS fold SEQ_RS08305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS08325 PF05958 tRNA (Uracil-5-)-methyltransferase SEQ_RS08325 PF01938 TRAM domain SEQ_RS08335 PF02631 RecX family SEQ_RS08340 PF04167 Protein of unknown function (DUF402) SEQ_RS08360 PF01610 Transposase SEQ_RS08360 PF13683 Integrase core domain SEQ_RS08415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SEQ_RS08415 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SEQ_RS08435 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SEQ_RS08440 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SEQ_RS08440 PF13457 GW (Gly-Tryp) dipeptide domain SEQ_RS08555 PF04607 Region found in RelA / SpoT proteins SEQ_RS08555 PF13291 ACT domain SEQ_RS08555 PF02824 TGS domain SEQ_RS08575 PF04466 Phage terminase large subunit SEQ_RS08575 PF17288 Terminase RNAseH like domain SEQ_RS08580 PF00665 Integrase core domain SEQ_RS08580 PF13333 Integrase core domain SEQ_RS08580 PF13276 HTH-like domain SEQ_RS08605 PF00239 Resolvase, N terminal domain SEQ_RS08605 PF07508 Recombinase SEQ_RS08605 PF13408 Recombinase zinc beta ribbon domain SEQ_RS08610 PF04851 Type III restriction enzyme, res subunit SEQ_RS08610 PF00271 Helicase conserved C-terminal domain SEQ_RS08615 PF01205 Uncharacterized protein family UPF0029 SEQ_RS08615 PF09186 Domain of unknown function (DUF1949) SEQ_RS08620 PF00291 Pyridoxal-phosphate dependent enzyme SEQ_RS08625 PF00575 S1 RNA binding domain SEQ_RS08630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SEQ_RS08635 PF00072 Response regulator receiver domain SEQ_RS08635 PF00196 Bacterial regulatory proteins, luxR family SEQ_RS08640 PF00672 HAMP domain SEQ_RS08640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS08640 PF07730 Histidine kinase SEQ_RS08650 PF00069 Protein kinase domain SEQ_RS08650 PF03793 PASTA domain SEQ_RS08660 PF01029 NusB family SEQ_RS08660 PF01189 16S rRNA methyltransferase RsmB/F SEQ_RS08665 PF02911 Formyl transferase, C-terminal domain SEQ_RS08665 PF00551 Formyl transferase SEQ_RS08670 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SEQ_RS08670 PF00271 Helicase conserved C-terminal domain SEQ_RS08670 PF18074 Primosomal protein N C-terminal domain SEQ_RS08670 PF17764 3′ DNA-binding domain (3′BD) SEQ_RS08670 PF04851 Type III restriction enzyme, res subunit SEQ_RS08675 PF01192 RNA polymerase Rpb6 SEQ_RS08680 PF00625 Guanylate kinase SEQ_RS08685 PF01966 HD domain SEQ_RS08685 PF12072 Domain of unknown function (DUF3552) SEQ_RS08685 PF00013 KH domain SEQ_RS08690 PF02664 S-Ribosylhomocysteinase (LuxS) SEQ_RS08700 PF13276 HTH-like domain SEQ_RS08700 PF00665 Integrase core domain SEQ_RS08700 PF13333 Integrase core domain SEQ_RS08705 PF18708 MapZ extracellular C-terminal domain 2 SEQ_RS08705 PF18041 MapZ extracellular domain 1 SEQ_RS08710 PF02926 THUMP domain SEQ_RS08710 PF01170 Putative RNA methylase family UPF0020 SEQ_RS08715 PF05103 DivIVA protein SEQ_RS08720 PF06908 YspA SLOG family SEQ_RS08725 PF03838 Recombination protein U SEQ_RS08730 PF00912 Transglycosylase SEQ_RS08730 PF00905 Penicillin binding protein transpeptidase domain SEQ_RS08735 PF03051 Peptidase C1-like family SEQ_RS08740 PF02540 NAD synthase SEQ_RS08745 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SEQ_RS08745 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SEQ_RS08745 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SEQ_RS08750 PF00324 Amino acid permease SEQ_RS08755 PF07992 Pyridine nucleotide-disulphide oxidoreductase SEQ_RS08765 PF00005 ABC transporter SEQ_RS08770 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS08775 PF00497 Bacterial extracellular solute-binding proteins, family 3 SEQ_RS08785 PF00271 Helicase conserved C-terminal domain SEQ_RS08785 PF00270 DEAD/DEAH box helicase SEQ_RS08790 PF00953 Glycosyl transferase family 4 SEQ_RS08790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SEQ_RS08795 PF03793 PASTA domain SEQ_RS08795 PF03717 Penicillin-binding Protein dimerisation domain SEQ_RS08795 PF00905 Penicillin binding protein transpeptidase domain SEQ_RS08805 PF01795 MraW methylase family SEQ_RS08815 PF00171 Aldehyde dehydrogenase family SEQ_RS08820 PF00696 Amino acid kinase family SEQ_RS08835 PF00665 Integrase core domain SEQ_RS08835 PF13276 HTH-like domain SEQ_RS08835 PF13333 Integrase core domain SEQ_RS08850 PF00005 ABC transporter SEQ_RS08860 PF00746 LPXTG cell wall anchor motif SEQ_RS08860 PF04650 YSIRK type signal peptide SEQ_RS08865 PF02780 Transketolase, C-terminal domain SEQ_RS08865 PF00456 Transketolase, thiamine diphosphate binding domain SEQ_RS08865 PF02779 Transketolase, pyrimidine binding domain SEQ_RS08870 PF00923 Transaldolase/Fructose-6-phosphate aldolase SEQ_RS08875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SEQ_RS08875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SEQ_RS08880 PF03413 Peptidase propeptide and YPEB domain SEQ_RS08900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SEQ_RS08905 PF06156 Initiation control protein YabA SEQ_RS08910 PF04468 PSP1 C-terminal conserved region SEQ_RS08915 PF09115 DNA polymerase III, delta subunit, C terminal SEQ_RS08920 PF02223 Thymidylate kinase SEQ_RS08925 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SEQ_RS08935 PF00574 Clp protease SEQ_RS08945 PF01943 Polysaccharide biosynthesis protein SEQ_RS08945 PF14667 Polysaccharide biosynthesis C-terminal domain SEQ_RS08950 PF02875 Mur ligase family, glutamate ligase domain SEQ_RS08950 PF08245 Mur ligase middle domain SEQ_RS08955 PF00005 ABC transporter SEQ_RS08960 PF01497 Periplasmic binding protein SEQ_RS08965 PF01032 FecCD transport family SEQ_RS08970 PF01032 FecCD transport family SEQ_RS08980 PF02833 DHHA2 domain SEQ_RS08980 PF01368 DHH family SEQ_RS08985 PF11380 Stealth protein CR2, conserved region 2 SEQ_RS08985 PF17101 Stealth protein CR1, conserved region 1 SEQ_RS08990 PF04055 Radical SAM superfamily SEQ_RS08995 PF00571 CBS domain SEQ_RS08995 PF03471 Transporter associated domain SEQ_RS08995 PF01595 Cyclin M transmembrane N-terminal domain SEQ_RS09000 PF06962 Putative rRNA methylase SEQ_RS09005 PF01636 Phosphotransferase enzyme family SEQ_RS09010 PF04055 Radical SAM superfamily SEQ_RS09010 PF16199 Radical_SAM C-terminal domain SEQ_RS09015 PF01569 PAP2 superfamily SEQ_RS09020 PF12822 ECF transporter, substrate-specific component SEQ_RS09065 PF00588 SpoU rRNA Methylase family SEQ_RS09070 PF01809 Putative membrane protein insertion efficiency factor SEQ_RS09075 PF01479 S4 domain SEQ_RS09075 PF00849 RNA pseudouridylate synthase SEQ_RS09080 PF04079 Segregation and condensation complex subunit ScpB SEQ_RS09085 PF02616 Segregation and condensation protein ScpA SEQ_RS09090 PF00589 Phage integrase family SEQ_RS09105 PF01725 Ham1 family SEQ_RS09110 PF01177 Asp/Glu/Hydantoin racemase SEQ_RS09115 PF03672 Uncharacterised protein family (UPF0154) SEQ_RS09120 PF01027 Inhibitor of apoptosis-promoting Bax1 SEQ_RS09130 PF00588 SpoU rRNA Methylase family SEQ_RS09130 PF08032 RNA 2'-O ribose methyltransferase substrate binding SEQ_RS09140 PF00665 Integrase core domain SEQ_RS09140 PF13276 HTH-like domain SEQ_RS09140 PF13333 Integrase core domain SEQ_RS09155 PF00708 Acylphosphatase SEQ_RS09160 PF02096 60Kd inner membrane protein SEQ_RS09165 PF03449 Transcription elongation factor, N-terminal SEQ_RS09165 PF01272 Transcription elongation factor, GreA/GreB, C-term SEQ_RS09170 PF02618 YceG-like family SEQ_RS09180 PF02875 Mur ligase family, glutamate ligase domain SEQ_RS09180 PF01225 Mur ligase family, catalytic domain SEQ_RS09180 PF08245 Mur ligase middle domain SEQ_RS09190 PF04434 SWIM zinc finger SEQ_RS09190 PF00271 Helicase conserved C-terminal domain SEQ_RS09190 PF00176 SNF2 family N-terminal domain SEQ_RS09195 PF01926 50S ribosome-binding GTPase SEQ_RS09195 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SEQ_RS09200 PF07319 Primosomal protein DnaI N-terminus SEQ_RS09200 PF01695 IstB-like ATP binding protein SEQ_RS09210 PF03477 ATP cone domain SEQ_RS09215 PF00512 His Kinase A (phospho-acceptor) domain SEQ_RS09215 PF18719 ArlS sensor domain SEQ_RS09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEQ_RS09220 PF00072 Response regulator receiver domain SEQ_RS09220 PF00486 Transcriptional regulatory protein, C terminal SEQ_RS09230 PF01435 Peptidase family M48 SEQ_RS09235 PF04011 LemA family SEQ_RS09240 PF02527 rRNA small subunit methyltransferase G SEQ_RS09245 PF02386 Cation transport protein SEQ_RS09250 PF02254 TrkA-N domain SEQ_RS09250 PF02080 TrkA-C domain SEQ_RS09255 PF00375 Sodium:dicarboxylate symporter family SEQ_RS09260 PF05525 Branched-chain amino acid transport protein SEQ_RS09265 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS09270 PF00005 ABC transporter SEQ_RS09270 PF09383 NIL domain SEQ_RS09275 PF07687 Peptidase dimerisation domain SEQ_RS09275 PF01546 Peptidase family M20/M25/M40 SEQ_RS09280 PF03180 NLPA lipoprotein SEQ_RS09285 PF00497 Bacterial extracellular solute-binding proteins, family 3 SEQ_RS09290 PF01709 Transcriptional regulator SEQ_RS09295 PF07739 TipAS antibiotic-recognition domain SEQ_RS09295 PF13411 MerR HTH family regulatory protein SEQ_RS09300 PF05636 HIGH Nucleotidyl Transferase SEQ_RS09305 PF13649 Methyltransferase domain SEQ_RS09315 PF01966 HD domain SEQ_RS09320 PF01467 Cytidylyltransferase-like SEQ_RS09325 PF01985 CRS1 / YhbY (CRM) domain SEQ_RS09330 PF01926 50S ribosome-binding GTPase SEQ_RS09375 PF00005 ABC transporter SEQ_RS09375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SEQ_RS09380 PF00005 ABC transporter SEQ_RS09380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SEQ_RS09385 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS09385 PF12911 N-terminal TM domain of oligopeptide transport permease C SEQ_RS09390 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS09395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SEQ_RS09400 PF00768 D-alanyl-D-alanine carboxypeptidase SEQ_RS09400 PF07943 Penicillin-binding protein 5, C-terminal domain SEQ_RS09405 PF00768 D-alanyl-D-alanine carboxypeptidase SEQ_RS09405 PF07943 Penicillin-binding protein 5, C-terminal domain SEQ_RS09410 PF07943 Penicillin-binding protein 5, C-terminal domain SEQ_RS09410 PF00768 D-alanyl-D-alanine carboxypeptidase SEQ_RS09425 PF01458 Uncharacterized protein family (UPF0051) SEQ_RS09430 PF01592 NifU-like N terminal domain SEQ_RS09435 PF00266 Aminotransferase class-V SEQ_RS09440 PF01458 Uncharacterized protein family (UPF0051) SEQ_RS09445 PF00005 ABC transporter SEQ_RS09450 PF00953 Glycosyl transferase family 4 SEQ_RS09455 PF05389 Negative regulator of genetic competence (MecA) SEQ_RS09460 PF02673 Bacitracin resistance protein BacA SEQ_RS09465 PF00528 Binding-protein-dependent transport system inner membrane component SEQ_RS09470 PF00005 ABC transporter SEQ_RS09480 PF02734 DAK2 domain SEQ_RS09480 PF13684 Dihydroxyacetone kinase family SEQ_RS09485 PF03780 Asp23 family, cell envelope-related function SEQ_RS09490 PF00830 Ribosomal L28 family SEQ_RS09500 PF01116 Fructose-bisphosphate aldolase class-II SEQ_RS09515 PF06418 CTP synthase N-terminus SEQ_RS09515 PF00117 Glutamine amidotransferase class-I SEQ_RS09520 PF05066 HB1, ASXL, restriction endonuclease HTH domain SEQ_RS09525 PF05698 Bacterial trigger factor protein (TF) C-terminus SEQ_RS09525 PF05697 Bacterial trigger factor protein (TF) SEQ_RS09525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SEQ_RS09530 PF00128 Alpha amylase, catalytic domain SEQ_RS09530 PF16738 Starch-binding module 26 SEQ_RS09535 PF00924 Mechanosensitive ion channel SEQ_RS09540 PF04260 Protein of unknown function (DUF436) SEQ_RS09550 PF08543 Phosphomethylpyrimidine kinase SEQ_RS09550 PF02581 Thiamine monophosphate synthase SEQ_RS09555 PF01416 tRNA pseudouridine synthase SEQ_RS09560 PF13840 ACT domain SEQ_RS09560 PF00696 Amino acid kinase family SEQ_RS09670 PF01297 Zinc-uptake complex component A periplasmic SEQ_RS09680 PF00781 Diacylglycerol kinase catalytic domain SEQ_RS09685 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS09690 PF08544 GHMP kinases C terminal SEQ_RS09690 PF10509 Galactokinase galactose-binding signature SEQ_RS09690 PF00288 GHMP kinases N terminal domain SEQ_RS09695 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SEQ_RS09695 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SEQ_RS09700 PF16363 GDP-mannose 4,6 dehydratase SEQ_RS09705 PF01263 Aldose 1-epimerase SEQ_RS09730 PF00270 DEAD/DEAH box helicase SEQ_RS09730 PF13749 Putative ATP-dependent DNA helicase recG C-terminal SEQ_RS09730 PF17191 RecG wedge domain SEQ_RS09735 PF12008 Type I restriction and modification enzyme - subunit R C terminal SEQ_RS09735 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SEQ_RS09735 PF18766 SWI2/SNF2 ATPase SEQ_RS09745 PF01420 Type I restriction modification DNA specificity domain SEQ_RS09750 PF12161 HsdM N-terminal domain SEQ_RS09750 PF02384 N-6 DNA Methylase SEQ_RS09790 PF00589 Phage integrase family SEQ_RS09790 PF02899 Phage integrase, N-terminal SAM-like domain SEQ_RS09795 PF00380 Ribosomal protein S9/S16 SEQ_RS09800 PF00572 Ribosomal protein L13 SEQ_RS09805 PF02645 Uncharacterised protein, DegV family COG1307 SEQ_RS09815 PF08032 RNA 2'-O ribose methyltransferase substrate binding SEQ_RS09815 PF00588 SpoU rRNA Methylase family SEQ_RS09825 PF00636 Ribonuclease III domain SEQ_RS09830 PF09190 DALR domain SEQ_RS09830 PF01406 tRNA synthetases class I (C) catalytic domain SEQ_RS09835 PF06426 Serine acetyltransferase, N-terminal SEQ_RS09835 PF00132 Bacterial transferase hexapeptide (six repeats) SEQ_RS09845 PF00575 S1 RNA binding domain SEQ_RS09845 PF03725 3' exoribonuclease family, domain 2 SEQ_RS09845 PF01138 3' exoribonuclease family, domain 1 SEQ_RS09845 PF00013 KH domain SEQ_RS09845 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SEQ_RS09855 PF13333 Integrase core domain SEQ_RS09855 PF00665 Integrase core domain SEQ_RS09860 PF00312 Ribosomal protein S15 SEQ_RS09870 PF01327 Polypeptide deformylase SEQ_RS09875 PF02525 Flavodoxin-like fold SEQ_RS09880 PF01047 MarR family SEQ_RS09885 PF00929 Exonuclease SEQ_RS09885 PF14480 DNA polymerase III polC-type N-terminus I SEQ_RS09885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SEQ_RS09885 PF07733 Bacterial DNA polymerase III alpha NTPase domain SEQ_RS09885 PF11490 DNA polymerase III polC-type N-terminus II SEQ_RS09885 PF02811 PHP domain SEQ_RS09895 PF04073 Aminoacyl-tRNA editing domain SEQ_RS09895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SEQ_RS09895 PF03129 Anticodon binding domain SEQ_RS09900 PF02163 Peptidase family M50 SEQ_RS09900 PF13180 PDZ domain SEQ_RS09910 PF01255 Putative undecaprenyl diphosphate synthase SEQ_RS09915 PF02699 Preprotein translocase subunit SEQ_RS09925 PF00128 Alpha amylase, catalytic domain SEQ_RS09930 PF03459 TOBE domain SEQ_RS09930 PF17912 MalK OB fold domain SEQ_RS09930 PF00005 ABC transporter SEQ_RS09935 PF13556 PucR C-terminal helix-turn-helix domain SEQ_RS09945 PF02580 D-Tyr-tRNA(Tyr) deacylase SEQ_RS09950 PF02824 TGS domain SEQ_RS09950 PF04607 Region found in RelA / SpoT proteins SEQ_RS09950 PF13291 ACT domain SEQ_RS09955 PF02370 M protein repeat SEQ_RS09955 PF00746 LPXTG cell wall anchor motif SEQ_RS09965 PF07972 NrdI Flavodoxin like SEQ_RS09970 PF03372 Endonuclease/Exonuclease/phosphatase family SEQ_RS09975 PF02378 Phosphotransferase system, EIIC SEQ_RS09975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SEQ_RS09975 PF00367 phosphotransferase system, EIIB SEQ_RS09985 PF00356 Bacterial regulatory proteins, lacI family SEQ_RS09985 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SEQ_RS09995 PF04452 RNA methyltransferase SEQ_RS10025 PF00425 chorismate binding enzyme SEQ_RS10025 PF04715 Anthranilate synthase component I, N terminal region SEQ_RS10030 PF00117 Glutamine amidotransferase class-I SEQ_RS10035 PF05496 Holliday junction DNA helicase RuvB P-loop domain SEQ_RS10035 PF16193 AAA C-terminal domain SEQ_RS10035 PF12002 MgsA AAA+ ATPase C terminal SEQ_RS10040 PF13333 Integrase core domain SEQ_RS10040 PF00665 Integrase core domain SEQ_RS10055 PF01381 Helix-turn-helix SEQ_RS10060 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SEQ_RS10060 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SEQ_RS10065 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SEQ_RS10190 PF04466 Phage terminase large subunit SEQ_RS10190 PF17288 Terminase RNAseH like domain SEQ_RS10315 PF14659 Phage integrase, N-terminal SAM-like domain SEQ_RS10315 PF00589 Phage integrase family SEQ_RS10325 PF00665 Integrase core domain SEQ_RS10325 PF13333 Integrase core domain SEQ_RS10325 PF13276 HTH-like domain SEQ_RS10355 PF00746 LPXTG cell wall anchor motif SEQ_RS10355 PF02370 M protein repeat SEQ_RS10360 PF00746 LPXTG cell wall anchor motif SEQ_RS10360 PF04650 YSIRK type signal peptide SEQ_RS10375 PF00465 Iron-containing alcohol dehydrogenase SEQ_RS10380 PF00923 Transaldolase/Fructose-6-phosphate aldolase SEQ_RS10385 PF01228 Glycine radical SEQ_RS10385 PF02901 Pyruvate formate lyase-like SEQ_RS10390 PF02378 Phosphotransferase system, EIIC SEQ_RS10395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SEQ_RS10400 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SEQ_RS10405 PF13936 Helix-turn-helix domain SEQ_RS10405 PF04198 Putative sugar-binding domain SEQ_RS10410 PF08220 DeoR-like helix-turn-helix domain SEQ_RS10410 PF00455 DeoR C terminal sensor domain SEQ_RS10415 PF04055 Radical SAM superfamily SEQ_RS10420 PF00709 Adenylosuccinate synthetase SEQ_RS10450 PF01430 Hsp33 protein SEQ_RS10455 PF01207 Dihydrouridine synthase (Dus) SEQ_RS10470 PF00005 ABC transporter SEQ_RS10475 PF02653 Branched-chain amino acid transport system / permease component SEQ_RS10490 PF00436 Single-strand binding protein family SEQ_RS10500 PF14794 Domain of unknown function (DUF4479) SEQ_RS10500 PF01588 Putative tRNA binding domain SEQ_RS10505 PF00085 Thioredoxin SEQ_RS10515 PF05343 M42 glutamyl aminopeptidase SEQ_RS10520 PF03807 NADP oxidoreductase coenzyme F420-dependent SEQ_RS10520 PF14748 Pyrroline-5-carboxylate reductase dimerisation SEQ_RS10545 PF03883 Peroxide stress protein YaaA SEQ_RS10560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SEQ_RS10565 PF03477 ATP cone domain SEQ_RS10565 PF13597 Anaerobic ribonucleoside-triphosphate reductase SEQ_RS10575 PF06949 Protein of unknown function (DUF1292) SEQ_RS10580 PF03652 Holliday junction resolvase SEQ_RS10585 PF06135 IreB regulatory phosphoprotein SEQ_RS10590 PF03960 ArsC family SEQ_RS10595 PF00154 recA bacterial DNA recombination protein SEQ_RS10600 PF02464 Competence-damaged protein SEQ_RS10600 PF18146 Damage-inducible protein CinA KH domain SEQ_RS10600 PF00994 Probable molybdopterin binding domain SEQ_RS10620 PF13673 Acetyltransferase (GNAT) domain SEQ_RS10620 PF13302 Acetyltransferase (GNAT) domain SEQ_RS10620 PF03352 Methyladenine glycosylase SEQ_RS10620 PF00117 Glutamine amidotransferase class-I SEQ_RS10620 PF00958 GMP synthase C terminal domain SEQ_RS10625 PF01330 RuvA N terminal domain SEQ_RS10625 PF07499 RuvA, C-terminal domain SEQ_RS10630 PF07690 Major Facilitator Superfamily SEQ_RS10635 PF08676 MutL C terminal dimerisation domain SEQ_RS10635 PF01119 DNA mismatch repair protein, C-terminal domain SEQ_RS10640 PF01624 MutS domain I SEQ_RS10640 PF00488 MutS domain V SEQ_RS10640 PF05190 MutS family domain IV SEQ_RS10640 PF05188 MutS domain II SEQ_RS10640 PF05192 MutS domain III SEQ_RS10650 PF01316 Arginine repressor, DNA binding domain SEQ_RS10650 PF02863 Arginine repressor, C-terminal domain SEQ_RS10655 PF05746 DALR anticodon binding domain SEQ_RS10655 PF00750 tRNA synthetases class I (R) SEQ_RS10655 PF03485 Arginyl tRNA synthetase N terminal domain SEQ_RS10660 PF12848 ABC transporter SEQ_RS10660 PF00005 ABC transporter SEQ_RS10665 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SEQ_RS10665 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SEQ_RS10670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SEQ_RS10670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SEQ_RS10675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SEQ_RS10675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SEQ_RS10680 PF02938 GAD domain SEQ_RS10680 PF01336 OB-fold nucleic acid binding domain SEQ_RS10680 PF00152 tRNA synthetases class II (D, K and N) SEQ_RS10690 PF00005 ABC transporter SEQ_RS10710 PF13393 Histidyl-tRNA synthetase SEQ_RS10710 PF03129 Anticodon binding domain SEQ_RS10720 PF01783 Ribosomal L32p protein family SEQ_RS10745 PF00072 Response regulator receiver domain SEQ_RS10745 PF00196 Bacterial regulatory proteins, luxR family SEQ_RS10760 PF13333 Integrase core domain SEQ_RS10760 PF00665 Integrase core domain SEQ_RS10775 PF02687 FtsX-like permease family SEQ_RS10775 PF00005 ABC transporter SEQ_RS10775 PF12704 MacB-like periplasmic core domain SEQ_RS10785 PF04650 YSIRK type signal peptide SEQ_RS10785 PF00746 LPXTG cell wall anchor motif SEQ_RS10805 PF13276 HTH-like domain SEQ_RS10805 PF13333 Integrase core domain SEQ_RS10805 PF00665 Integrase core domain SEQ_RS10835 PF01479 S4 domain SEQ_RS10835 PF00163 Ribosomal protein S4/S9 N-terminal domain SEQ_RS10845 PF03796 DnaB-like helicase C terminal domain SEQ_RS10845 PF00772 DnaB-like helicase N terminal domain SEQ_RS10850 PF01281 Ribosomal protein L9, N-terminal domain SEQ_RS10850 PF03948 Ribosomal protein L9, C-terminal domain SEQ_RS10855 PF01368 DHH family SEQ_RS10855 PF02272 DHHA1 domain SEQ_RS10860 PF13932 GidA associated domain SEQ_RS10860 PF01134 Glucose inhibited division protein A SEQ_RS10865 PF00293 NUDIX domain SEQ_RS10865 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SEQ_RS10865 PF09297 NADH pyrophosphatase zinc ribbon domain SEQ_RS10875 PF03315 Serine dehydratase beta chain SEQ_RS10875 PF01842 ACT domain SEQ_RS10880 PF03313 Serine dehydratase alpha chain SEQ_RS10885 PF13419 Haloacid dehalogenase-like hydrolase SEQ_RS10890 PF06737 Transglycosylase-like domain SEQ_RS10895 PF02361 Cobalt transport protein SEQ_RS10900 PF00005 ABC transporter SEQ_RS10905 PF00005 ABC transporter SEQ_RS10910 PF01066 CDP-alcohol phosphatidyltransferase SEQ_RS10920 PF00675 Insulinase (Peptidase family M16) SEQ_RS10920 PF05193 Peptidase M16 inactive domain SEQ_RS10935 PF02463 RecF/RecN/SMC N terminal domain SEQ_RS10940 PF06800 Sugar transport protein SEQ_RS10980 PF00478 IMP dehydrogenase / GMP reductase domain SEQ_RS10980 PF00571 CBS domain SEQ_RS10985 PF00579 tRNA synthetases class I (W and Y) SEQ_RS10990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SEQ_RS10990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SEQ_RS10995 PF12848 ABC transporter SEQ_RS10995 PF00005 ABC transporter SEQ_RS11020 PF02590 Predicted SPOUT methyltransferase SEQ_RS11025 PF13180 PDZ domain SEQ_RS11030 PF02195 ParB-like nuclease domain SEQ_RS11030 PF17762 HTH domain found in ParB protein SEQ_RS11045 PF02370 M protein repeat SEQ_RS11045 PF00746 LPXTG cell wall anchor motif SEQ_RS11055 PF00145 C-5 cytosine-specific DNA methylase SEQ_RS11065 PF00501 AMP-binding enzyme SEQ_RS11065 PF13193 AMP-binding enzyme C-terminal domain SEQ_RS11065 PF00668 Condensation domain SEQ_RS11065 PF00550 Phosphopantetheine attachment site