CO687_RS00180	SM00387	Histidine kinase-like ATPases
CO687_RS00190	SM00220	Serine/Threonine protein kinases, catalytic domain
CO687_RS00190	SM00740	CO687_RS00190
CO687_RS00195	SM00331	Sigma factor PP2C-like phosphatases
CO687_RS00195	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CO687_RS00210	SM00487	DEAD-like helicases superfamily
CO687_RS00210	SM00490	helicase superfamily c-terminal domain
CO687_RS00215	SM01409	CO687_RS00215
CO687_RS00220	SM00072	Guanylate kinase homologues.
CO687_RS00225	SM00322	K homology RNA-binding domain
CO687_RS00225	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CO687_RS00240	SM00981	CO687_RS00240
CO687_RS00300	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00310	SM00487	DEAD-like helicases superfamily
CO687_RS00310	SM00490	helicase superfamily c-terminal domain
CO687_RS00320	SM00740	CO687_RS00320
CO687_RS00335	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS00370	SM00829	Enoylreductase
CO687_RS00435	SM00322	K homology RNA-binding domain
CO687_RS00460	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00530	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CO687_RS00535	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CO687_RS00585	SM00487	DEAD-like helicases superfamily
CO687_RS00585	SM00490	helicase superfamily c-terminal domain
CO687_RS00630	SM00448	cheY-homologous receiver domain
CO687_RS00630	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS00635	SM01350	CO687_RS00635
CO687_RS00640	SM00244	prohibitin homologues
CO687_RS00665	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS00705	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00715	SM00954	Region found in RelA / SpoT proteins
CO687_RS00720	SM00448	cheY-homologous receiver domain
CO687_RS00720	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS00725	SM00387	Histidine kinase-like ATPases
CO687_RS00725	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS00750	SM00342	helix_turn_helix, arabinose operon control protein
CO687_RS00755	SM00450	Rhodanese Homology Domain
CO687_RS00780	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS00800	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00815	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00820	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00830	SM00382	ATPases associated with a variety of cellular activities
CO687_RS00830	SM00930	CO687_RS00830
CO687_RS00845	SM00062	Bacterial periplasmic substrate-binding proteins
CO687_RS00890	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CO687_RS00900	SM01103	CO687_RS00900
CO687_RS00930	SM00829	Enoylreductase
CO687_RS00940	SM00845	GatB domain
CO687_RS00990	SM00870	CO687_RS00990
CO687_RS01015	SM00487	DEAD-like helicases superfamily
CO687_RS01015	SM00490	helicase superfamily c-terminal domain
CO687_RS01020	SM01005	Alanine racemase, C-terminal domain
CO687_RS01035	SM00957	SecA DEAD-like domain
CO687_RS01035	SM00958	SecA preprotein cross-linking domain
CO687_RS01040	SM00873	B3/4 domain
CO687_RS01070	SM01208	CO687_RS01070
CO687_RS01085	SM01208	CO687_RS01085
CO687_RS01090	SM00271	DnaJ molecular chaperone homology domain
CO687_RS01120	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01135	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS01150	SM00855	Phosphoglycerate mutase family
CO687_RS01155	SM00855	Phosphoglycerate mutase family
CO687_RS01180	SM00422	helix_turn_helix, mercury resistance
CO687_RS01185	SM00635	Bacterial Ig-like domain 2
CO687_RS01185	SM00640	Glycosyl hydrolases family 32
CO687_RS01185	SM01208	CO687_RS01185
CO687_RS01220	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01230	SM00448	cheY-homologous receiver domain
CO687_RS01230	SM00850	LytTr DNA-binding domain
CO687_RS01250	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01255	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS01305	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CO687_RS01320	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01330	SM00535	Ribonuclease III family
CO687_RS01335	SM00840	CO687_RS01335
CO687_RS01360	SM00316	Ribosomal protein S1-like RNA-binding domain
CO687_RS01360	SM00322	K homology RNA-binding domain
CO687_RS01415	SM01387	CO687_RS01415
CO687_RS01465	SM00363	S4 RNA-binding domain
CO687_RS01505	SM00855	Phosphoglycerate mutase family
CO687_RS01510	SM00855	Phosphoglycerate mutase family
CO687_RS01545	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01560	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01570	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01580	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS01590	SM00387	Histidine kinase-like ATPases
CO687_RS01590	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS01595	SM00448	cheY-homologous receiver domain
CO687_RS01595	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS01610	SM00382	ATPases associated with a variety of cellular activities
CO687_RS01640	SM00534	ATPase domain of DNA mismatch repair MUTS family
CO687_RS01650	SM00342	helix_turn_helix, arabinose operon control protein
CO687_RS01665	SM00854	Bacterial capsule synthesis protein PGA_cap
CO687_RS01695	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CO687_RS01765	SM00463	Small MutS-related domain
CO687_RS01765	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CO687_RS01765	SM00534	ATPase domain of DNA mismatch repair MUTS family
CO687_RS01895	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CO687_RS01895	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
CO687_RS01925	SM00422	helix_turn_helix, mercury resistance
CO687_RS01970	SM00849	Metallo-beta-lactamase superfamily
CO687_RS01990	SM01230	CO687_RS01990
CO687_RS01995	SM00422	helix_turn_helix, mercury resistance
CO687_RS02005	SM00257	Lysin motif
CO687_RS02025	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CO687_RS02030	SM00838	Elongation factor G C-terminus
CO687_RS02030	SM00889	Elongation factor G, domain IV
CO687_RS02070	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CO687_RS02100	SM00650	Ribosomal RNA adenine dimethylases
CO687_RS02120	SM00493	CO687_RS02120
CO687_RS02165	SM00393	Putative single-stranded nucleic acids-binding domain
CO687_RS02165	SM01245	CO687_RS02165
CO687_RS02195	SM00947	Carbonic anhydrase
CO687_RS02215	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02240	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02245	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02330	SM00812	Alpha-L-fucosidase
CO687_RS02355	SM00881	CoA binding domain
CO687_RS02360	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CO687_RS02360	SM00474	3'-5' exonuclease
CO687_RS02360	SM00475	5'-3' exonuclease
CO687_RS02360	SM00482	DNA polymerase A domain
CO687_RS02385	SM00257	Lysin motif
CO687_RS02460	SM01130	CO687_RS02460
CO687_RS02500	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CO687_RS02505	SM00226	Low molecular weight phosphatase family
CO687_RS02515	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02555	SM00354	helix_turn _helix lactose operon repressor
CO687_RS02560	SM00642	Alpha-amylase domain
CO687_RS02630	SM00420	helix_turn_helix, Deoxyribose operon repressor
CO687_RS02630	SM01134	CO687_RS02630
CO687_RS02745	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CO687_RS02855	SM00866	CO687_RS02855
CO687_RS02860	SM00798	AICARFT/IMPCHase bienzyme
CO687_RS02860	SM00851	MGS-like domain
CO687_RS02885	SM01211	CO687_RS02885
CO687_RS02935	SM01228	CO687_RS02935
CO687_RS02945	SM00257	Lysin motif
CO687_RS02960	SM00257	Lysin motif
CO687_RS02970	SM00382	ATPases associated with a variety of cellular activities
CO687_RS02975	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03010	SM00116	Domain in cystathionine beta-synthase and other proteins.
CO687_RS03010	SM01240	CO687_RS03010
CO687_RS03020	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03040	SM00480	DNA polymerase III beta subunit
CO687_RS03045	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03045	SM00760	Bacterial dnaA protein helix-turn-helix domain
CO687_RS03050	SM00470	ParB-like nuclease domain
CO687_RS03055	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CO687_RS03080	SM00448	cheY-homologous receiver domain
CO687_RS03080	SM00850	LytTr DNA-binding domain
CO687_RS03105	SM00487	DEAD-like helicases superfamily
CO687_RS03105	SM00490	helicase superfamily c-terminal domain
CO687_RS03105	SM00982	CO687_RS03105
CO687_RS03105	SM01058	CarD-like/TRCF domain
CO687_RS03110	SM00363	S4 RNA-binding domain
CO687_RS03130	SM00977	TilS substrate C-terminal domain
CO687_RS03140	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03280	SM01400	CO687_RS03280
CO687_RS03315	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03320	SM00363	S4 RNA-binding domain
CO687_RS03320	SM01390	CO687_RS03320
CO687_RS03325	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03340	SM01209	CO687_RS03340
CO687_RS03340	SM01210	CO687_RS03340
CO687_RS03350	SM01001	AIR carboxylase
CO687_RS03375	SM00998	Adenylosuccinate lyase C-terminus
CO687_RS03400	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS03445	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS03460	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03505	SM00836	DALR anticodon binding domain
CO687_RS03505	SM01016	Arginyl tRNA synthetase N terminal dom
CO687_RS03515	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CO687_RS03515	SM00534	ATPase domain of DNA mismatch repair MUTS family
CO687_RS03525	SM00850	LytTr DNA-binding domain
CO687_RS03530	SM00853	MutL C terminal dimerisation domain
CO687_RS03530	SM01340	CO687_RS03530
CO687_RS03540	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS03545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CO687_RS03560	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS03565	SM00852	Probable molybdopterin binding domain
CO687_RS03570	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03590	SM00732	Likely ribonuclease with RNase H fold.
CO687_RS03610	SM00155	Phospholipase D. Active site motifs.
CO687_RS03715	SM00641	Glycosyl hydrolases family 25
CO687_RS03750	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CO687_RS03750	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CO687_RS03765	SM01208	CO687_RS03765
CO687_RS03795	SM00382	ATPases associated with a variety of cellular activities
CO687_RS03795	SM01086	C-terminal, D2-small domain, of ClpB protein
CO687_RS03835	SM00788	Adenylosuccinate synthetase
CO687_RS03845	SM01403	CO687_RS03845
CO687_RS03865	SM01382	CO687_RS03865
CO687_RS03865	SM01383	CO687_RS03865
CO687_RS03880	SM00322	K homology RNA-binding domain
CO687_RS03900	SM01374	CO687_RS03900
CO687_RS03905	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CO687_RS03960	SM00316	Ribosomal protein S1-like RNA-binding domain
CO687_RS03980	SM00662	RNA polymerases D
CO687_RS04075	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS04080	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04125	SM00363	S4 RNA-binding domain
CO687_RS04145	SM00663	RNA polymerase I subunit A N-terminus
CO687_RS04215	SM00905	Dihydroneopterin aldolase
CO687_RS04220	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04235	SM00448	cheY-homologous receiver domain
CO687_RS04235	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS04240	SM00387	Histidine kinase-like ATPases
CO687_RS04240	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS04245	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS04295	SM00387	Histidine kinase-like ATPases
CO687_RS04300	SM00421	helix_turn_helix, Lux Regulon
CO687_RS04300	SM00448	cheY-homologous receiver domain
CO687_RS04340	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04345	SM00883	Chaperonin 10 Kd subunit
CO687_RS04425	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04435	SM00978	CO687_RS04435
CO687_RS04445	SM00841	Elongation factor P, C-terminal
CO687_RS04445	SM01185	CO687_RS04445
CO687_RS04465	SM00354	helix_turn _helix lactose operon repressor
CO687_RS04470	SM00640	Glycosyl hydrolases family 32
CO687_RS04485	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04485	SM01086	C-terminal, D2-small domain, of ClpB protein
CO687_RS04490	SM01323	CO687_RS04490
CO687_RS04530	SM00479	CO687_RS04530
CO687_RS04530	SM00481	DNA polymerase alpha chain like domain
CO687_RS04535	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04645	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CO687_RS04680	SM00954	Region found in RelA / SpoT proteins
CO687_RS04705	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS04710	SM00529	Helix-turn-helix diphteria tox regulatory element
CO687_RS04710	SM00899	CO687_RS04710
CO687_RS04720	SM00028	Tetratricopeptide repeats
CO687_RS04720	SM01043	Bacterial transcriptional activator domain
CO687_RS04760	SM01221	CO687_RS04760
CO687_RS04760	SM01222	CO687_RS04760
CO687_RS04790	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04805	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04875	SM00829	Enoylreductase
CO687_RS04890	SM00812	Alpha-L-fucosidase
CO687_RS04900	SM01149	CO687_RS04900
CO687_RS04905	SM00872	Alpha mannosidase, middle domain
CO687_RS04945	SM00342	helix_turn_helix, arabinose operon control protein
CO687_RS04945	SM00448	cheY-homologous receiver domain
CO687_RS04980	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS04985	SM00382	ATPases associated with a variety of cellular activities
CO687_RS04990	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05020	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05045	SM00850	LytTr DNA-binding domain
CO687_RS05065	SM01120	CO687_RS05065
CO687_RS05065	SM01121	CO687_RS05065
CO687_RS05070	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05085	SM00421	helix_turn_helix, Lux Regulon
CO687_RS05085	SM00448	cheY-homologous receiver domain
CO687_RS05090	SM00244	prohibitin homologues
CO687_RS05100	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05105	SM00062	Bacterial periplasmic substrate-binding proteins
CO687_RS05130	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05155	SM00936	Penicillin-binding protein 5, C-terminal domain 
CO687_RS05190	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05195	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05240	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS05260	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CO687_RS05265	SM00822	CO687_RS05265
CO687_RS05270	SM00825	Beta-ketoacyl synthase
CO687_RS05285	SM00878	Biotin carboxylase C-terminal domain
CO687_RS05390	SM00116	Domain in cystathionine beta-synthase and other proteins.
CO687_RS05410	SM00363	S4 RNA-binding domain
CO687_RS05415	SM01234	CO687_RS05415
CO687_RS05450	SM00014	Acid phosphatase homologues
CO687_RS05460	SM00729	Elongator protein 3, MiaB family, Radical SAM
CO687_RS05475	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05500	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05515	SM01091	Transporter associated domain
CO687_RS05525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CO687_RS05525	SM00866	CO687_RS05525
CO687_RS05535	SM00642	Alpha-amylase domain
CO687_RS05555	SM01131	CO687_RS05555
CO687_RS05590	SM00831	Cation transporter/ATPase, N-terminus
CO687_RS05625	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05630	SM00382	ATPases associated with a variety of cellular activities
CO687_RS05635	SM00116	Domain in cystathionine beta-synthase and other proteins.
CO687_RS05655	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CO687_RS05665	SM00831	Cation transporter/ATPase, N-terminus
CO687_RS05700	SM01329	CO687_RS05700
CO687_RS05720	SM00487	DEAD-like helicases superfamily
CO687_RS05720	SM00490	helicase superfamily c-terminal domain
CO687_RS05725	SM00420	helix_turn_helix, Deoxyribose operon repressor
CO687_RS05725	SM01134	CO687_RS05725
CO687_RS05745	SM00563	Phosphate acyltransferases
CO687_RS05755	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CO687_RS05760	SM00849	Metallo-beta-lactamase superfamily
CO687_RS05785	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CO687_RS05795	SM00100	Cyclic nucleotide-monophosphate binding domain
CO687_RS05795	SM00419	helix_turn_helix, cAMP Regulatory protein
CO687_RS05875	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CO687_RS05880	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CO687_RS05905	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS05955	SM00642	Alpha-amylase domain
CO687_RS05980	SM00014	Acid phosphatase homologues
CO687_RS06015	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06065	SM00478	endonuclease III
CO687_RS06100	SM00420	helix_turn_helix, Deoxyribose operon repressor
CO687_RS06100	SM01134	CO687_RS06100
CO687_RS06120	SM01133	CO687_RS06120
CO687_RS06155	SM01133	CO687_RS06155
CO687_RS06160	SM01061	CAT RNA binding domain
CO687_RS06210	SM00448	cheY-homologous receiver domain
CO687_RS06210	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS06215	SM00387	Histidine kinase-like ATPases
CO687_RS06235	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06245	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06255	SM00850	LytTr DNA-binding domain
CO687_RS06295	SM01208	CO687_RS06295
CO687_RS06300	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06350	SM01022	CO687_RS06350
CO687_RS06375	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06400	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06400	SM00843	CO687_RS06400
CO687_RS06420	SM00649	Ribosomal protein L11/L12
CO687_RS06460	SM00493	CO687_RS06460
CO687_RS06500	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06510	SM00849	Metallo-beta-lactamase superfamily
CO687_RS06515	SM00479	CO687_RS06515
CO687_RS06515	SM00487	DEAD-like helicases superfamily
CO687_RS06515	SM00491	CO687_RS06515
CO687_RS06540	SM00387	Histidine kinase-like ATPases
CO687_RS06540	SM00433	TopoisomeraseII
CO687_RS06575	SM01192	CO687_RS06575
CO687_RS06575	SM01193	CO687_RS06575
CO687_RS06610	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06620	SM00448	cheY-homologous receiver domain
CO687_RS06620	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS06625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CO687_RS06625	SM00387	Histidine kinase-like ATPases
CO687_RS06625	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS06630	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CO687_RS06715	SM00116	Domain in cystathionine beta-synthase and other proteins.
CO687_RS06730	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS06735	SM00873	B3/4 domain
CO687_RS06755	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CO687_RS06755	SM00292	breast cancer carboxy-terminal domain
CO687_RS06755	SM00532	Ligase N family
CO687_RS06760	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CO687_RS06765	SM00642	Alpha-amylase domain
CO687_RS06775	SM00830	Chorismate mutase type II
CO687_RS06830	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS06925	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06930	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS06940	SM00382	ATPases associated with a variety of cellular activities
CO687_RS06975	SM00642	Alpha-amylase domain
CO687_RS07010	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07015	SM00481	DNA polymerase alpha chain like domain
CO687_RS07065	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07070	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07075	SM00729	Elongator protein 3, MiaB family, Radical SAM
CO687_RS07195	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS07235	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07240	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07245	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07295	SM00400	zinc finger
CO687_RS07295	SM00493	CO687_RS07295
CO687_RS07410	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CO687_RS07430	SM00986	Uracil DNA glycosylase superfamily
CO687_RS07430	SM00987	UreE urease accessory protein, C-terminal domain 
CO687_RS07450	SM01207	CO687_RS07450
CO687_RS07455	SM00387	Histidine kinase-like ATPases
CO687_RS07455	SM00433	TopoisomeraseII
CO687_RS07470	SM00434	DNA Topoisomerase IV
CO687_RS07495	SM00316	Ribosomal protein S1-like RNA-binding domain
CO687_RS07515	SM00434	DNA Topoisomerase IV
CO687_RS07530	SM00881	CoA binding domain
CO687_RS07550	SM01400	CO687_RS07550
CO687_RS07555	SM01118	CO687_RS07555
CO687_RS07560	SM00954	Region found in RelA / SpoT proteins
CO687_RS07580	SM00478	endonuclease III
CO687_RS07645	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CO687_RS07650	SM01130	CO687_RS07650
CO687_RS07675	SM01061	CAT RNA binding domain
CO687_RS07680	SM01266	CO687_RS07680
CO687_RS07690	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CO687_RS07690	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CO687_RS07690	SM00493	CO687_RS07690
CO687_RS07760	SM00860	SMI1 / KNR4 family
CO687_RS07770	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07775	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07835	SM00342	helix_turn_helix, arabinose operon control protein
CO687_RS07835	SM00448	cheY-homologous receiver domain
CO687_RS07840	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CO687_RS07840	SM00387	Histidine kinase-like ATPases
CO687_RS07910	SM01240	CO687_RS07910
CO687_RS07935	SM00937	CO687_RS07935
CO687_RS07995	SM00382	ATPases associated with a variety of cellular activities
CO687_RS07995	SM00994	ClpX C4-type zinc finger
CO687_RS07995	SM01086	C-terminal, D2-small domain, of ClpB protein
CO687_RS08005	SM00047	Lysozyme subfamily 2
CO687_RS08035	SM00861	Transketolase, pyrimidine binding domain
CO687_RS08075	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08075	SM00962	SRP54-type protein, GTPase domain
CO687_RS08075	SM00963	SRP54-type protein, helical bundle domain
CO687_RS08090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CO687_RS08090	SM00866	CO687_RS08090
CO687_RS08100	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08135	SM00420	helix_turn_helix, Deoxyribose operon repressor
CO687_RS08135	SM01134	CO687_RS08135
CO687_RS08165	SM00851	MGS-like domain
CO687_RS08165	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CO687_RS08165	SM01209	CO687_RS08165
CO687_RS08170	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CO687_RS08200	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CO687_RS08215	SM00363	S4 RNA-binding domain
CO687_RS08250	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08265	SM01133	CO687_RS08265
CO687_RS08270	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CO687_RS08295	SM00642	Alpha-amylase domain
CO687_RS08300	SM00387	Histidine kinase-like ATPases
CO687_RS08300	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS08305	SM00448	cheY-homologous receiver domain
CO687_RS08305	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS08325	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS08370	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08375	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08415	SM00904	Riboflavin kinase
CO687_RS08480	SM00487	DEAD-like helicases superfamily
CO687_RS08480	SM00490	helicase superfamily c-terminal domain
CO687_RS08485	SM00062	Bacterial periplasmic substrate-binding proteins
CO687_RS08485	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CO687_RS08485	SM00918	Ligated ion channel L-glutamate- and glycine-binding site
CO687_RS08490	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08550	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08775	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08780	SM00062	Bacterial periplasmic substrate-binding proteins
CO687_RS08820	SM00957	SecA DEAD-like domain
CO687_RS08820	SM00958	SecA preprotein cross-linking domain
CO687_RS08870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CO687_RS08875	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08880	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08940	SM00487	DEAD-like helicases superfamily
CO687_RS08940	SM00490	helicase superfamily c-terminal domain
CO687_RS08965	SM00382	ATPases associated with a variety of cellular activities
CO687_RS08975	SM01208	CO687_RS08975
CO687_RS09035	SM00354	helix_turn _helix lactose operon repressor
CO687_RS09075	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09080	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09100	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09110	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS09135	SM01329	CO687_RS09135
CO687_RS09140	SM00917	LeuA allosteric (dimerisation) domain
CO687_RS09150	SM00354	helix_turn _helix lactose operon repressor
CO687_RS09165	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09185	SM00530	Helix-turn-helix XRE-family like proteins 
CO687_RS09270	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09280	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09315	SM00873	B3/4 domain
CO687_RS09315	SM00874	tRNA synthetase B5 domain
CO687_RS09315	SM00896	Ferredoxin-fold anticodon binding domain
CO687_RS09330	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09360	SM00028	Tetratricopeptide repeats
CO687_RS09415	SM00450	Rhodanese Homology Domain
CO687_RS09420	SM00829	Enoylreductase
CO687_RS09425	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS09440	SM00986	Uracil DNA glycosylase superfamily
CO687_RS09440	SM00987	UreE urease accessory protein, C-terminal domain 
CO687_RS09475	SM00860	SMI1 / KNR4 family
CO687_RS09495	SM00860	SMI1 / KNR4 family
CO687_RS09545	SM00465	GIY-YIG type nucleases (URI domain)
CO687_RS09560	SM00342	helix_turn_helix, arabinose operon control protein
CO687_RS09560	SM00871	Bacterial transcription activator, effector binding domain
CO687_RS09575	SM00838	Elongation factor G C-terminus
CO687_RS09590	SM00450	Rhodanese Homology Domain
CO687_RS09615	SM00981	CO687_RS09615
CO687_RS09635	SM00116	Domain in cystathionine beta-synthase and other proteins.
CO687_RS09665	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09700	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09720	SM00849	Metallo-beta-lactamase superfamily
CO687_RS09725	SM00731	SprT homologues.
CO687_RS09730	SM00316	Ribosomal protein S1-like RNA-binding domain
CO687_RS09730	SM00732	Likely ribonuclease with RNase H fold.
CO687_RS09755	SM00382	ATPases associated with a variety of cellular activities
CO687_RS09755	SM00962	SRP54-type protein, GTPase domain
CO687_RS09755	SM00963	SRP54-type protein, helical bundle domain
CO687_RS09770	SM00968	SMC proteins Flexible Hinge Domain
CO687_RS09775	SM00358	Double-stranded RNA binding motif
CO687_RS09775	SM00535	Ribonuclease III family
CO687_RS09785	SM00849	Metallo-beta-lactamase superfamily
CO687_RS09790	SM00091	PAS domain
CO687_RS09790	SM00387	Histidine kinase-like ATPases
CO687_RS09790	SM00388	His Kinase A (phosphoacceptor) domain
CO687_RS09795	SM00448	cheY-homologous receiver domain
CO687_RS09795	SM00862	Transcriptional regulatory protein, C terminal
CO687_RS09800	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CO687_RS09825	SM00354	helix_turn _helix lactose operon repressor
CO687_RS09860	SM00892	DNA/RNA non-specific endonuclease
CO687_RS09920	SM00855	Phosphoglycerate mutase family
CO687_RS09935	SM00382	ATPases associated with a variety of cellular activities
CO687_RS10040	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS10060	SM00382	ATPases associated with a variety of cellular activities
CO687_RS10095	SM00316	Ribosomal protein S1-like RNA-binding domain
CO687_RS10095	SM00955	CO687_RS10095
CO687_RS10120	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CO687_RS10120	SM01232	CO687_RS10120
CO687_RS10155	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CO687_RS10155	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CO687_RS10175	SM00855	Phosphoglycerate mutase family
CO687_RS10185	SM00411	bacterial (prokaryotic) histone like domain
CO687_RS10210	SM00363	S4 RNA-binding domain
CO687_RS10255	SM00382	ATPases associated with a variety of cellular activities
CO687_RS10255	SM01086	C-terminal, D2-small domain, of ClpB protein
CO687_RS10285	SM00347	helix_turn_helix multiple antibiotic resistance protein
CO687_RS10300	SM00363	S4 RNA-binding domain
CO687_RS10320	SM00864	Tubulin/FtsZ family, GTPase domain
CO687_RS10320	SM00865	Tubulin/FtsZ family, C-terminal domain
CO687_RS10325	SM00842	Cell division protein FtsA
CO687_RS10350	SM00838	Elongation factor G C-terminus
CO687_RS10360	SM00450	Rhodanese Homology Domain
CO687_RS10420	SM00830	Chorismate mutase type II
CO687_RS10465	SM00530	Helix-turn-helix XRE-family like proteins 
