locus-tag	class	description
BMF34_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BMF34_RS00010	COG0592	DNA-directed DNA polymerase activity
BMF34_RS00020	COG0012	GTP binding
BMF34_RS00025	COG0193	aminoacyl-tRNA hydrolase activity
BMF34_RS00030	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BMF34_RS00035	COG2244	polysaccharide biosynthetic process
BMF34_RS00040	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BMF34_RS00070	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BMF34_RS00100	COG0531	amino acid
BMF34_RS00115	COG2801	Transposase and inactivated derivatives
BMF34_RS00120	COG3328	transposase activity
BMF34_RS00135	COG2801	Transposase and inactivated derivatives
BMF34_RS00320	COG3942	CHAP domain
BMF34_RS00330	COG0436	Aminotransferase
BMF34_RS00340	COG0416	fatty acid biosynthetic process
BMF34_RS00345	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BMF34_RS00350	COG2188	Transcriptional regulator
BMF34_RS00355	COG2222	sugar isomerase
BMF34_RS00375	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS00380	COG3715	PTS system
BMF34_RS00385	COG3716	PTS system mannose fructose sorbose family IID component
BMF34_RS00390	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS00390	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS00410	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BMF34_RS00420	COG2255	four-way junction helicase activity
BMF34_RS00425	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BMF34_RS00435	COG2755	lipolytic protein G-D-S-L family
BMF34_RS00435	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BMF34_RS00440	COG1454	alcohol dehydrogenase
BMF34_RS00440	COG1012	belongs to the aldehyde dehydrogenase family
BMF34_RS00460	COG0051	transcription antitermination factor activity, RNA binding
BMF34_RS00465	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BMF34_RS00470	COG0088	Forms part of the polypeptide exit tunnel
BMF34_RS00475	COG0089	rRNA binding
BMF34_RS00495	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BMF34_RS00560	COG0200	Binds to the 23S rRNA
BMF34_RS00565	COG0201	protein transport
BMF34_RS00570	COG0563	adenylate kinase activity
BMF34_RS00590	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BMF34_RS00700	COG2963	transposase activity
BMF34_RS00705	COG2801	Transposase and inactivated derivatives
BMF34_RS00755	COG3328	transposase activity
BMF34_RS00780	COG2801	Transposase and inactivated derivatives
BMF34_RS00785	COG2963	transposase activity
BMF34_RS00805	COG1064	alcohol dehydrogenase
BMF34_RS00835	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
BMF34_RS00850	COG1252	NADH dehydrogenase
BMF34_RS00855	COG1271	oxidase subunit
BMF34_RS00860	COG1294	oxidase, subunit
BMF34_RS00865	COG4988	ABC transporter
BMF34_RS00870	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BMF34_RS00875	COG0142	geranyltranstransferase activity
BMF34_RS00880	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BMF34_RS00890	COG1121	(ABC) transporter
BMF34_RS00895	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BMF34_RS00905	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BMF34_RS00905	COG4499	WXG100 protein secretion system (Wss), protein YukC
BMF34_RS00915	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BMF34_RS00925	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BMF34_RS00930	COG1459	type II secretion system
BMF34_RS00935	COG4537	Required for transformation and DNA binding
BMF34_RS00960	COG0827	DNA restriction-modification system
BMF34_RS00985	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BMF34_RS00990	COG1363	Peptidase, m42
BMF34_RS01000	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BMF34_RS01005	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BMF34_RS01030	COG4120	Belongs to the binding-protein-dependent transport system permease family
BMF34_RS01035	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BMF34_RS01040	COG1428	Deoxynucleoside kinase
BMF34_RS01045	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BMF34_RS01050	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BMF34_RS01090	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BMF34_RS01100	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BMF34_RS01105	COG1349	DNA-binding transcription factor activity
BMF34_RS01110	COG1882	Formate acetyltransferase
BMF34_RS01145	COG3328	transposase activity
BMF34_RS01150	COG2801	Transposase and inactivated derivatives
BMF34_RS01155	COG2963	transposase activity
BMF34_RS01160	COG0803	Belongs to the bacterial solute-binding protein 9 family
BMF34_RS01160	COG3443	Belongs to the bacterial solute-binding protein 9 family
BMF34_RS01195	COG1028	Short-chain dehydrogenase reductase Sdr
BMF34_RS01205	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
BMF34_RS01210	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS01215	COG3715	PTS system
BMF34_RS01220	COG3716	PTS system mannose fructose sorbose family IID component
BMF34_RS01230	COG1609	Transcriptional regulator
BMF34_RS01235	COG5492	domain, Protein
BMF34_RS01240	COG1131	(ABC) transporter
BMF34_RS01250	COG2203	Gaf domain
BMF34_RS01250	COG4585	Histidine kinase
BMF34_RS01255	COG2197	response regulator
BMF34_RS01265	COG4978	Transcriptional regulator
BMF34_RS01265	COG0789	Transcriptional regulator
BMF34_RS01280	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BMF34_RS01285	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BMF34_RS01290	COG1012	belongs to the aldehyde dehydrogenase family
BMF34_RS01295	COG1882	Formate acetyltransferase
BMF34_RS01300	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BMF34_RS01315	COG1454	alcohol dehydrogenase
BMF34_RS01315	COG1012	belongs to the aldehyde dehydrogenase family
BMF34_RS01330	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
BMF34_RS01345	COG1454	alcohol dehydrogenase
BMF34_RS01345	COG1012	belongs to the aldehyde dehydrogenase family
BMF34_RS01350	COG4869	propanediol catabolic process
BMF34_RS01385	COG0577	efflux transmembrane transporter activity
BMF34_RS01390	COG1136	(ABC) transporter
BMF34_RS01395	COG0745	RESPONSE REGULATOR receiver
BMF34_RS01400	COG5002	protein histidine kinase activity
BMF34_RS01410	COG1396	sequence-specific DNA binding
BMF34_RS01460	COG1131	(ABC) transporter
BMF34_RS01475	COG3328	transposase activity
BMF34_RS01505	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BMF34_RS01510	COG0512	Glutamine amidotransferase of anthranilate synthase
BMF34_RS01515	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BMF34_RS01520	COG0154	amidase activity
BMF34_RS01535	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BMF34_RS01550	COG2190	(PTS) system
BMF34_RS01550	COG1263	PTS System
BMF34_RS01550	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS01560	COG1363	Peptidase, m42
BMF34_RS01570	COG0737	Belongs to the 5'-nucleotidase family
BMF34_RS01600	COG3842	ATPase activity
BMF34_RS01640	COG1523	belongs to the glycosyl hydrolase 13 family
BMF34_RS01645	COG1609	Transcriptional regulator
BMF34_RS01650	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BMF34_RS01655	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BMF34_RS01660	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BMF34_RS01670	COG1862	Preprotein translocase
BMF34_RS01680	COG4589	Belongs to the CDS family
BMF34_RS01690	COG0442	prolyl-tRNA aminoacylation
BMF34_RS01720	COG0242	peptide deformylase activity
BMF34_RS01735	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BMF34_RS01750	COG1045	serine acetyltransferase
BMF34_RS01760	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BMF34_RS01790	COG0383	alpha-mannosidase activity
BMF34_RS01805	COG4209	transmembrane transport
BMF34_RS01810	COG0395	ABC-type sugar transport system, permease component
BMF34_RS01815	COG1653	transport
BMF34_RS01825	COG2972	Histidine kinase
BMF34_RS01830	COG2207	Transcriptional regulator
BMF34_RS01830	COG4753	response regulator
BMF34_RS01835	COG2723	6-phospho-beta-galactosidase activity
BMF34_RS01855	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BMF34_RS01880	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS01885	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BMF34_RS01890	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BMF34_RS01925	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BMF34_RS01975	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
BMF34_RS01990	COG2851	Citrate transporter
BMF34_RS02000	COG0511	ligase activity, forming carbon-carbon bonds
BMF34_RS02005	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
BMF34_RS02010	COG3052	prosthetic group binding
BMF34_RS02035	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
BMF34_RS02045	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BMF34_RS02045	COG0392	lysyltransferase activity
BMF34_RS02060	COG1122	ATPase activity
BMF34_RS02065	COG4720	Psort location CytoplasmicMembrane, score
BMF34_RS02105	COG0527	aspartate kinase activity
BMF34_RS02110	COG0101	tRNA pseudouridine synthase activity
BMF34_RS02115	COG0351	phosphomethylpyrimidine kinase
BMF34_RS02115	COG0352	thiamine-phosphate diphosphorylase activity
BMF34_RS02120	COG4720	Psort location CytoplasmicMembrane, score
BMF34_RS02130	COG0668	transmembrane transport
BMF34_RS02135	COG0544	peptidyl-prolyl cis-trans isomerase activity
BMF34_RS02140	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BMF34_RS02145	COG3343	RNA polymerase activity
BMF34_RS02155	COG3275	phosphorelay sensor kinase activity
BMF34_RS02160	COG3279	Response regulator of the LytR AlgR family
BMF34_RS02170	COG1346	cytolysis
BMF34_RS02215	COG1126	abc transporter atp-binding protein
BMF34_RS02220	COG0765	amino acid transport
BMF34_RS02235	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BMF34_RS02245	COG0719	Fe-S assembly protein
BMF34_RS02250	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BMF34_RS02260	COG0719	Fe-S assembly protein
BMF34_RS02270	COG2963	transposase activity
BMF34_RS02275	COG2801	Transposase and inactivated derivatives
BMF34_RS02280	COG1686	Belongs to the peptidase S11 family
BMF34_RS02285	COG1686	Belongs to the peptidase S11 family
BMF34_RS02290	COG4166	transmembrane transport
BMF34_RS02295	COG0601	transmembrane transport
BMF34_RS02300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BMF34_RS02305	COG0444	Belongs to the ABC transporter superfamily
BMF34_RS02385	COG2137	regulation of response to DNA damage stimulus
BMF34_RS02395	COG1216	Glycosyl transferase, family 2
BMF34_RS02395	COG1442	glycosyl transferase family 8
BMF34_RS02410	COG1216	Glycosyl transferase, family 2
BMF34_RS02410	COG1442	glycosyl transferase family 8
BMF34_RS02415	COG1442	glycosyl transferase family 8
BMF34_RS02445	COG1073	alpha beta
BMF34_RS02495	COG1131	(ABC) transporter
BMF34_RS02500	COG2207	Transcriptional regulator
BMF34_RS02510	COG1175	transmembrane transport
BMF34_RS02515	COG0395	ABC-type sugar transport system, permease component
BMF34_RS02530	COG1247	-acetyltransferase
BMF34_RS02550	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BMF34_RS02555	COG0586	Pfam SNARE associated Golgi protein
BMF34_RS02560	COG1668	transmembrane transport
BMF34_RS02565	COG4152	abc transporter atp-binding protein
BMF34_RS02600	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BMF34_RS02650	COG3591	Belongs to the peptidase S1B family
BMF34_RS02675	COG2963	transposase activity
BMF34_RS02680	COG2801	Transposase and inactivated derivatives
BMF34_RS02690	COG2972	Histidine kinase
BMF34_RS02695	COG2207	Transcriptional regulator
BMF34_RS02695	COG4753	response regulator
BMF34_RS02700	COG1840	ABC-type Fe3 transport system, periplasmic component
BMF34_RS02705	COG3842	ATPase activity
BMF34_RS02710	COG1178	ABC-type Fe3 transport system permease component
BMF34_RS02715	COG0673	inositol 2-dehydrogenase activity
BMF34_RS02745	COG0454	-acetyltransferase
BMF34_RS02755	COG1288	antiporter activity
BMF34_RS02760	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BMF34_RS02765	COG0549	Belongs to the carbamate kinase family
BMF34_RS02780	COG0742	ribosomal rna small subunit methyltransferase
BMF34_RS02785	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BMF34_RS02790	COG3480	Lon protease (S16) C-terminal proteolytic domain
BMF34_RS02795	COG1609	Transcriptional regulator
BMF34_RS02800	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BMF34_RS02805	COG1869	D-ribose catabolic process
BMF34_RS02815	COG1172	Belongs to the binding-protein-dependent transport system permease family
BMF34_RS02820	COG1879	ABC-type sugar transport system periplasmic component
BMF34_RS02825	COG0737	Belongs to the 5'-nucleotidase family
BMF34_RS02830	COG4470	Protein conserved in bacteria
BMF34_RS02835	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BMF34_RS02845	COG1132	(ABC) transporter
BMF34_RS02850	COG1132	(ABC) transporter
BMF34_RS02865	COG1940	carbohydrate kinase activity
BMF34_RS02870	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BMF34_RS02875	COG1217	gtp-binding protein TYPA
BMF34_RS02885	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BMF34_RS02890	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BMF34_RS02910	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BMF34_RS02915	COG1799	cell septum assembly
BMF34_RS02930	COG3599	regulation of cell shape
BMF34_RS02950	COG0542	response to heat
BMF34_RS02955	COG4703	Protein of unknown function (DUF1797)
BMF34_RS02960	COG0765	amino acid transport
BMF34_RS02965	COG1126	abc transporter atp-binding protein
BMF34_RS02970	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BMF34_RS02990	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
BMF34_RS02995	COG1438	arginine binding
BMF34_RS03000	COG0497	DNA recombination
BMF34_RS03010	COG2801	Transposase and inactivated derivatives
BMF34_RS03020	COG2755	lipolytic protein G-D-S-L family
BMF34_RS03035	COG2217	Heavy metal translocating P-type atpase
BMF34_RS03045	COG0167	dihydroorotate dehydrogenase activity
BMF34_RS03055	COG1827	regulation of RNA biosynthetic process
BMF34_RS03065	COG2116	formate transmembrane transporter activity
BMF34_RS03070	COG0768	penicillin binding
BMF34_RS03075	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BMF34_RS03080	COG1181	Belongs to the D-alanine--D-alanine ligase family
BMF34_RS03085	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BMF34_RS03120	COG0561	phosphatase activity
BMF34_RS03125	COG0513	Belongs to the DEAD box helicase family
BMF34_RS03140	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BMF34_RS03145	COG0204	Acyl-transferase
BMF34_RS03150	COG1596	polysaccharide export
BMF34_RS03150	COG1555	photosystem II stabilization
BMF34_RS03155	COG2333	competence protein COMEC
BMF34_RS03155	COG0658	competence protein
BMF34_RS03190	COG1187	pseudouridine synthase activity
BMF34_RS03230	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BMF34_RS03235	COG4122	O-methyltransferase activity
BMF34_RS03240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BMF34_RS03260	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BMF34_RS03265	COG0436	Aminotransferase
BMF34_RS03285	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BMF34_RS03290	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BMF34_RS03295	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BMF34_RS03315	COG0726	polysaccharide deacetylase
BMF34_RS03320	COG0513	Belongs to the DEAD box helicase family
BMF34_RS03325	COG0572	uridine kinase
BMF34_RS03340	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BMF34_RS03360	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BMF34_RS03370	COG2211	Major facilitator Superfamily
BMF34_RS03375	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BMF34_RS03380	COG2186	Transcriptional regulator
BMF34_RS03385	COG0800	Aldolase
BMF34_RS03395	COG1312	Catalyzes the dehydration of D-mannonate
BMF34_RS03400	COG1028	Short-chain dehydrogenase reductase Sdr
BMF34_RS03425	COG4109	DRTGG domain
BMF34_RS03430	COG0024	Methionine aminopeptidase
BMF34_RS03490	COG2963	transposase activity
BMF34_RS03495	COG2801	Transposase and inactivated derivatives
BMF34_RS03500	COG3328	transposase activity
BMF34_RS03505	COG3328	transposase activity
BMF34_RS03520	COG0577	efflux transmembrane transporter activity
BMF34_RS03520	COG1136	(ABC) transporter
BMF34_RS03530	COG0584	glycerophosphoryl diester phosphodiesterase
BMF34_RS03550	COG0318	PFAM AMP-dependent synthetase and ligase
BMF34_RS03555	COG1960	acyl-CoA dehydrogenase activity
BMF34_RS03560	COG0427	acetyl-CoA hydrolase
BMF34_RS03565	COG1024	Enoyl-CoA hydratase
BMF34_RS03565	COG1250	3-hydroxyacyl-CoA dehydrogenase
BMF34_RS03570	COG0183	Belongs to the thiolase family
BMF34_RS03575	COG0583	DNA-binding transcription factor activity
BMF34_RS03580	COG2050	protein possibly involved in aromatic compounds catabolism
BMF34_RS03585	COG4619	ABC transporter
BMF34_RS03590	COG0390	transport system, permease component
BMF34_RS03595	COG4868	Belongs to the UPF0371 family
BMF34_RS03600	COG2814	Major facilitator Superfamily
BMF34_RS03615	COG1187	pseudouridine synthase activity
BMF34_RS03620	COG0598	Magnesium transport protein CorA
BMF34_RS03625	COG1132	(ABC) transporter
BMF34_RS03635	COG2309	aminopeptidase activity
BMF34_RS03645	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BMF34_RS03655	COG0488	(ABC) transporter
BMF34_RS03660	COG1126	abc transporter atp-binding protein
BMF34_RS03670	COG0556	nucleotide-excision repair
BMF34_RS03685	COG1696	Membrane protein involved in D-alanine export
BMF34_RS03690	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BMF34_RS03695	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BMF34_RS03700	COG2182	Extracellular solute-binding protein
BMF34_RS03705	COG0366	Alpha amylase catalytic
BMF34_RS03715	COG1175	transmembrane transport
BMF34_RS03720	COG3833	ABC-type maltose transport systems, permease component
BMF34_RS03735	COG3833	ABC-type maltose transport systems, permease component
BMF34_RS03740	COG1175	transmembrane transport
BMF34_RS03750	COG1609	Transcriptional regulator
BMF34_RS03755	COG1640	4-alpha-glucanotransferase
BMF34_RS03760	COG0058	SHG alpha-glucan phosphorylase activity
BMF34_RS03770	COG1054	Belongs to the UPF0176 family
BMF34_RS03795	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BMF34_RS03810	COG0300	oxidoreductase activity
BMF34_RS03815	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BMF34_RS03815	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
BMF34_RS03820	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BMF34_RS03830	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BMF34_RS03835	COG3328	transposase activity
BMF34_RS03840	COG2384	SAM-dependent methyltransferase
BMF34_RS03855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BMF34_RS03860	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BMF34_RS03870	COG1088	dTDP-glucose 4,6-dehydratase activity
BMF34_RS03880	COG2706	6-phosphogluconolactonase activity
BMF34_RS03885	COG1051	belongs to the nudix hydrolase family
BMF34_RS03890	COG0628	permease
BMF34_RS03895	COG0457	Tetratricopeptide repeat
BMF34_RS03900	COG1293	RNA-binding protein homologous to eukaryotic snRNP
BMF34_RS03915	COG3842	ATPase activity
BMF34_RS03935	COG0488	(ABC) transporter
BMF34_RS03945	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BMF34_RS03950	COG0022	dehydrogenase e1 component
BMF34_RS03950	COG0508	dehydrogenase complex catalyzes the overall conversion of
BMF34_RS03955	COG0508	dehydrogenase complex catalyzes the overall conversion of
BMF34_RS03965	COG0095	Lipoate-protein ligase
BMF34_RS03970	COG3442	glutamine amidotransferase
BMF34_RS03975	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BMF34_RS03980	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BMF34_RS03990	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BMF34_RS04000	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BMF34_RS04030	COG1518	maintenance of DNA repeat elements
BMF34_RS04035	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BMF34_RS04055	COG0481	GTPase activity
BMF34_RS04065	COG1418	mRNA catabolic process
BMF34_RS04080	COG0656	L-ascorbic acid biosynthetic process
BMF34_RS04095	COG2259	Doxx family
BMF34_RS04100	COG1011	Hydrolase
BMF34_RS04105	COG1012	belongs to the aldehyde dehydrogenase family
BMF34_RS04110	COG0322	excinuclease ABC activity
BMF34_RS04130	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BMF34_RS04140	COG1393	Belongs to the ArsC family
BMF34_RS04150	COG0813	purine-nucleoside phosphorylase activity
BMF34_RS04160	COG0583	DNA-binding transcription factor activity
BMF34_RS04165	COG1316	TRANSCRIPTIONal
BMF34_RS04190	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BMF34_RS04200	COG0438	transferase activity, transferring glycosyl groups
BMF34_RS04200	COG4641	Protein conserved in bacteria
BMF34_RS04205	COG0110	maltose O-acetyltransferase activity
BMF34_RS04270	COG1881	PFAM PEBP family protein
BMF34_RS04280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BMF34_RS04285	COG0765	amino acid transport
BMF34_RS04290	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BMF34_RS04295	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BMF34_RS04305	COG0187	DNA topoisomerase II activity
BMF34_RS04320	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BMF34_RS04340	COG0539	negative regulation of cytoplasmic translation
BMF34_RS04370	COG1131	(ABC) transporter
BMF34_RS04375	COG1725	Transcriptional regulator
BMF34_RS04385	COG0205	6-phosphofructokinase activity
BMF34_RS04390	COG0469	pyruvate kinase activity
BMF34_RS04405	COG2213	PTS system mannitol-specific
BMF34_RS04410	COG3711	transcriptional antiterminator
BMF34_RS04415	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS04420	COG0246	Mannitol dehydrogenase
BMF34_RS04425	COG2824	Alkylphosphonate utilization operon protein PhnA
BMF34_RS04430	COG0765	amino acid transport
BMF34_RS04435	COG1126	abc transporter atp-binding protein
BMF34_RS04440	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BMF34_RS04450	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BMF34_RS04455	COG1115	amino acid carrier protein
BMF34_RS04465	COG2261	transglycosylase associated protein
BMF34_RS04510	COG1136	(ABC) transporter
BMF34_RS04520	COG2801	Transposase and inactivated derivatives
BMF34_RS04555	COG0196	riboflavin kinase activity
BMF34_RS04565	COG4476	Belongs to the UPF0223 family
BMF34_RS04570	COG0483	inositol monophosphate 1-phosphatase activity
BMF34_RS04580	COG0573	inorganic phosphate transmembrane transporter activity
BMF34_RS04585	COG0581	inorganic phosphate transmembrane transporter activity
BMF34_RS04600	COG0704	Plays a role in the regulation of phosphate uptake
BMF34_RS04610	COG0745	RESPONSE REGULATOR receiver
BMF34_RS04615	COG5002	protein histidine kinase activity
BMF34_RS04630	COG2813	Specifically methylates the guanine in position
BMF34_RS04635	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BMF34_RS04640	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BMF34_RS04645	COG0295	cytidine deaminase activity
BMF34_RS04650	COG1744	ABC transporter substrate-binding protein PnrA-like
BMF34_RS04655	COG3845	ABC transporter
BMF34_RS04660	COG4603	Belongs to the binding-protein-dependent transport system permease family
BMF34_RS04665	COG1079	Belongs to the binding-protein-dependent transport system permease family
BMF34_RS04680	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BMF34_RS04685	COG4684	Psort location CytoplasmicMembrane, score
BMF34_RS04690	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BMF34_RS04695	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BMF34_RS04705	COG2759	Belongs to the formate--tetrahydrofolate ligase family
BMF34_RS04710	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BMF34_RS04715	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BMF34_RS04720	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BMF34_RS04725	COG1328	CTP reductase activity
BMF34_RS04725	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BMF34_RS04730	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BMF34_RS04735	COG0488	(ABC) transporter
BMF34_RS04760	COG1272	protein, Hemolysin III
BMF34_RS04780	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BMF34_RS04790	COG0110	maltose O-acetyltransferase activity
BMF34_RS04795	COG0758	DNA mediated transformation
BMF34_RS04800	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BMF34_RS04805	COG0583	DNA-binding transcription factor activity
BMF34_RS04830	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
BMF34_RS04840	COG3328	transposase activity
BMF34_RS04845	COG1136	(ABC) transporter
BMF34_RS04850	COG0577	efflux transmembrane transporter activity
BMF34_RS04855	COG0745	RESPONSE REGULATOR receiver
BMF34_RS04870	COG4974	Belongs to the 'phage' integrase family
BMF34_RS04880	COG3328	transposase activity
BMF34_RS04885	COG2815	serine threonine protein kinase
BMF34_RS04885	COG0515	serine threonine protein kinase
BMF34_RS04895	COG3328	transposase activity
BMF34_RS04915	COG0662	Cupin 2, conserved barrel domain protein
BMF34_RS04920	COG0673	inositol 2-dehydrogenase activity
BMF34_RS04940	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BMF34_RS04945	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
BMF34_RS04950	COG2188	Transcriptional regulator
BMF34_RS04980	COG3104	oligopeptide transport
BMF34_RS04985	COG0386	Belongs to the glutathione peroxidase family
BMF34_RS05005	COG3328	transposase activity
BMF34_RS05015	COG0346	lactoylglutathione lyase activity
BMF34_RS05020	COG3764	Sortase (surface protein transpeptidase)
BMF34_RS05030	COG0039	L-malate dehydrogenase activity
BMF34_RS05050	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BMF34_RS05055	COG3153	acetyltransferase
BMF34_RS05060	COG0009	L-threonylcarbamoyladenylate synthase
BMF34_RS05065	COG2890	protein-(glutamine-N5) methyltransferase activity
BMF34_RS05070	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BMF34_RS05080	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS05115	COG2233	PERMEase
BMF34_RS05125	COG0516	GMP reductase activity
BMF34_RS05130	COG1174	glycine betaine transport
BMF34_RS05135	COG0517	IMP dehydrogenase activity
BMF34_RS05135	COG1125	glycine betaine transport
BMF34_RS05150	COG4221	oxidoreductase activity
BMF34_RS05155	COG0280	phosphate acetyltransferase
BMF34_RS05160	COG0564	pseudouridine synthase activity
BMF34_RS05170	COG2357	RelA SpoT domain protein
BMF34_RS05185	COG1104	cysteine desulfurase activity
BMF34_RS05205	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BMF34_RS05210	COG2003	Belongs to the UPF0758 family
BMF34_RS05215	COG0628	permease
BMF34_RS05220	COG2723	6-phospho-beta-galactosidase activity
BMF34_RS05235	COG2723	6-phospho-beta-galactosidase activity
BMF34_RS05240	COG2207	Transcriptional regulator
BMF34_RS05245	COG1263	PTS System
BMF34_RS05245	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS05245	COG2190	(PTS) system
BMF34_RS05270	COG3493	citrate carrier protein
BMF34_RS05275	COG3290	protein histidine kinase activity
BMF34_RS05280	COG4565	transcriptional regulatory protein
BMF34_RS05290	COG1177	transmembrane transport
BMF34_RS05295	COG1176	ABC-type spermidine putrescine transport system, permease component I
BMF34_RS05305	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BMF34_RS05310	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS05315	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BMF34_RS05330	COG0302	gtp cyclohydrolase
BMF34_RS05335	COG0285	dihydrofolate synthase activity
BMF34_RS05340	COG0083	homoserine kinase activity
BMF34_RS05355	COG3328	transposase activity
BMF34_RS05390	COG2801	Transposase and inactivated derivatives
BMF34_RS05415	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BMF34_RS05425	COG3425	synthase
BMF34_RS05435	COG1304	FMN binding
BMF34_RS05450	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BMF34_RS05455	COG1132	(ABC) transporter
BMF34_RS05460	COG1132	(ABC) transporter
BMF34_RS05470	COG0242	peptide deformylase activity
BMF34_RS05475	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BMF34_RS05480	COG1132	(ABC) transporter
BMF34_RS05495	COG0488	(ABC) transporter
BMF34_RS05500	COG0617	tRNA 3'-terminal CCA addition
BMF34_RS05505	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BMF34_RS05530	COG1388	LysM domain
BMF34_RS05530	COG1705	Flagellar rod assembly protein muramidase FlgJ
BMF34_RS05535	COG1705	Flagellar rod assembly protein muramidase FlgJ
BMF34_RS05535	COG1388	LysM domain
BMF34_RS05540	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BMF34_RS05540	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS05540	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BMF34_RS05545	COG1105	Belongs to the carbohydrate kinase PfkB family
BMF34_RS05550	COG1349	DNA-binding transcription factor activity
BMF34_RS05570	COG0336	Belongs to the RNA methyltransferase TrmD family
BMF34_RS05575	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BMF34_RS05585	COG1837	Belongs to the UPF0109 family
BMF34_RS05590	COG0228	four-way junction DNA binding
BMF34_RS05600	COG0577	efflux transmembrane transporter activity
BMF34_RS05605	COG1136	(ABC) transporter
BMF34_RS05620	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BMF34_RS05625	COG0564	pseudouridine synthase activity
BMF34_RS05635	COG0583	DNA-binding transcription factor activity
BMF34_RS05640	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BMF34_RS05670	COG2963	transposase activity
BMF34_RS05675	COG2801	Transposase and inactivated derivatives
BMF34_RS05695	COG1104	cysteine desulfurase activity
BMF34_RS05705	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BMF34_RS05730	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BMF34_RS05735	COG1368	sulfuric ester hydrolase activity
BMF34_RS05745	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BMF34_RS05755	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BMF34_RS05795	COG1216	Glycosyl transferase, family 2
BMF34_RS05795	COG1442	glycosyl transferase family 8
BMF34_RS05810	COG0463	Glycosyl transferase, family 2
BMF34_RS05845	COG0463	Glycosyl transferase, family 2
BMF34_RS05860	COG2151	metal-sulfur cluster biosynthetic enzyme
BMF34_RS05865	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BMF34_RS05870	COG0358	DNA primase activity
BMF34_RS05875	COG1970	mechanosensitive ion channel activity
BMF34_RS05885	COG1074	ATP-dependent DNA helicase activity
BMF34_RS05895	COG2321	neutral zinc metallopeptidase
BMF34_RS05900	COG1136	(ABC) transporter
BMF34_RS05905	COG0577	efflux transmembrane transporter activity
BMF34_RS05950	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BMF34_RS05955	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BMF34_RS05960	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BMF34_RS05980	COG0356	it plays a direct role in the translocation of protons across the membrane
BMF34_RS05990	COG0297	glycogen (starch) synthase activity
BMF34_RS06000	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BMF34_RS06010	COG1523	belongs to the glycosyl hydrolase 13 family
BMF34_RS06015	COG1597	lipid kinase activity
BMF34_RS06020	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BMF34_RS06025	COG4708	membrane
BMF34_RS06050	COG1131	(ABC) transporter
BMF34_RS06085	COG0148	phosphopyruvate hydratase activity
BMF34_RS06105	COG0560	Phosphoserine phosphatase
BMF34_RS06110	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
BMF34_RS06125	COG0772	Belongs to the SEDS family
BMF34_RS06140	COG0335	large ribosomal subunit rRNA binding
BMF34_RS06145	COG0038	chloride channel
BMF34_RS06155	COG0716	FMN binding
BMF34_RS06165	COG0625	glutathione transferase activity
BMF34_RS06175	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BMF34_RS06180	COG2153	protein acetylation
BMF34_RS06185	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BMF34_RS06200	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS06230	COG1660	Displays ATPase and GTPase activities
BMF34_RS06240	COG0017	Asparaginyl-tRNA synthetase
BMF34_RS06245	COG0436	Aminotransferase
BMF34_RS06250	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BMF34_RS06250	COG1199	ATP-dependent helicase activity
BMF34_RS06260	COG2177	Part of the ABC transporter FtsEX involved in
BMF34_RS06265	COG2884	Cell division ATP-binding protein ftsE
BMF34_RS06270	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BMF34_RS06275	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BMF34_RS06280	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
BMF34_RS06290	COG0584	glycerophosphoryl diester phosphodiesterase
BMF34_RS06310	COG1078	dGTPase activity
BMF34_RS06345	COG1595	DNA-templated transcription, initiation
BMF34_RS06350	COG0772	Belongs to the SEDS family
BMF34_RS06360	COG1164	Oligoendopeptidase f
BMF34_RS06380	COG3859	Proton-coupled thiamine transporter YuaJ
BMF34_RS06385	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BMF34_RS06390	COG3304	Inner membrane component domain
BMF34_RS06395	COG0406	alpha-ribazole phosphatase activity
BMF34_RS06435	COG0285	dihydrofolate synthase activity
BMF34_RS06440	COG2986	histidine ammonia-lyase
BMF34_RS06445	COG0531	amino acid
BMF34_RS06460	COG3404	Formiminotransferase-cyclodeaminase
BMF34_RS06475	COG1228	amidohydrolase
BMF34_RS06480	COG4166	transmembrane transport
BMF34_RS06485	COG4443	Transcriptional Coactivator p15 (PC4)
BMF34_RS06490	COG0826	peptidase U32
BMF34_RS06515	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS06535	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BMF34_RS06555	COG2183	response to ionizing radiation
BMF34_RS06565	COG0704	Plays a role in the regulation of phosphate uptake
BMF34_RS06570	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BMF34_RS06575	COG0581	inorganic phosphate transmembrane transporter activity
BMF34_RS06580	COG0573	inorganic phosphate transmembrane transporter activity
BMF34_RS06585	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BMF34_RS06590	COG5002	protein histidine kinase activity
BMF34_RS06595	COG0745	RESPONSE REGULATOR receiver
BMF34_RS06600	COG0346	lactoylglutathione lyase activity
BMF34_RS06605	COG0701	Predicted permease
BMF34_RS06610	COG3689	TIGRFAM TIGR03943 family protein
BMF34_RS06615	COG1090	epimerase
BMF34_RS06620	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BMF34_RS06630	COG1447	Phosphotransferase system cellobiose-specific component IIA
BMF34_RS06640	COG3711	transcriptional antiterminator
BMF34_RS06640	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS06650	COG2723	6-phospho-beta-galactosidase activity
BMF34_RS06660	COG0552	protein localization to endoplasmic reticulum
BMF34_RS06665	COG0561	phosphatase activity
BMF34_RS06670	COG0561	phosphatase activity
BMF34_RS06690	COG3328	transposase activity
BMF34_RS06705	COG1196	nuclear chromosome segregation
BMF34_RS06710	COG0571	ribonuclease III activity
BMF34_RS06715	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BMF34_RS06720	COG5002	protein histidine kinase activity
BMF34_RS06725	COG0745	RESPONSE REGULATOR receiver
BMF34_RS06730	COG1126	abc transporter atp-binding protein
BMF34_RS06735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BMF34_RS06740	COG0765	amino acid transport
BMF34_RS06745	COG0765	amino acid transport
BMF34_RS06755	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BMF34_RS06760	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
BMF34_RS06765	COG1461	Dihydroxyacetone kinase
BMF34_RS06770	COG2376	Dihydroxyacetone kinase
BMF34_RS06780	COG2376	Dihydroxyacetone kinase
BMF34_RS06785	COG2963	transposase activity
BMF34_RS06790	COG2801	Transposase and inactivated derivatives
BMF34_RS06795	COG3328	transposase activity
BMF34_RS06800	COG4152	abc transporter atp-binding protein
BMF34_RS06815	COG1131	(ABC) transporter
BMF34_RS06825	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BMF34_RS06830	COG0438	transferase activity, transferring glycosyl groups
BMF34_RS06840	COG1609	Transcriptional regulator
BMF34_RS06845	COG0006	proline dipeptidase activity
BMF34_RS06855	COG0778	Nitroreductase
BMF34_RS06860	COG0346	lactoylglutathione lyase activity
BMF34_RS06865	COG0463	Glycosyl transferase, family 2
BMF34_RS06880	COG3328	transposase activity
BMF34_RS06900	COG0557	exoribonuclease II activity
BMF34_RS06915	COG0433	COG0433 Predicted ATPase
BMF34_RS06920	COG2364	Membrane
BMF34_RS06950	COG1131	(ABC) transporter
BMF34_RS06955	COG3328	transposase activity
BMF34_RS06990	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BMF34_RS06995	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BMF34_RS07000	COG1573	uracil-dna glycosylase
BMF34_RS07005	COG1702	phosphate starvation-inducible protein PhoH
BMF34_RS07020	COG4479	Belongs to the UPF0346 family
BMF34_RS07025	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BMF34_RS07035	COG0233	cytoplasmic translational termination
BMF34_RS07045	COG0081	regulation of translation
BMF34_RS07050	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BMF34_RS07055	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS07095	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BMF34_RS07105	COG0494	nUDIX hydrolase
BMF34_RS07110	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BMF34_RS07115	COG0673	inositol 2-dehydrogenase activity
BMF34_RS07120	COG1028	Short-chain dehydrogenase reductase Sdr
BMF34_RS07130	COG0582	viral genome integration into host DNA
BMF34_RS07150	COG1114	Component of the transport system for branched-chain amino acids
BMF34_RS07180	COG1304	FMN binding
BMF34_RS07185	COG1620	l-lactate permease
BMF34_RS07195	COG0640	Transcriptional regulator
BMF34_RS07200	COG0708	Exodeoxyribonuclease III
BMF34_RS07230	COG1393	Belongs to the ArsC family
BMF34_RS07235	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BMF34_RS07240	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BMF34_RS07250	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BMF34_RS07270	COG1774	PSP1 C-terminal conserved region
BMF34_RS07275	COG0470	DNA polymerase III
BMF34_RS07280	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BMF34_RS07285	COG0517	IMP dehydrogenase activity
BMF34_RS07305	COG0559	Belongs to the binding-protein-dependent transport system permease family
BMF34_RS07315	COG4471	UPF0298 protein
BMF34_RS07340	COG2244	polysaccharide biosynthetic process
BMF34_RS07360	COG1120	ATPase activity
BMF34_RS07365	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BMF34_RS07370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BMF34_RS07375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BMF34_RS07390	COG1227	inorganic diphosphatase activity
BMF34_RS07395	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BMF34_RS07400	COG1253	flavin adenine dinucleotide binding
BMF34_RS07410	COG1605	Chorismate mutase
BMF34_RS07410	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
BMF34_RS07425	COG1131	(ABC) transporter
BMF34_RS07430	COG1242	4 iron, 4 sulfur cluster binding
BMF34_RS07435	COG0671	phosphoesterase, PA-phosphatase related
BMF34_RS07440	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BMF34_RS07450	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BMF34_RS07455	COG1187	pseudouridine synthase activity
BMF34_RS07465	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BMF34_RS07490	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BMF34_RS07495	COG3763	UPF0154 protein
BMF34_RS07515	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BMF34_RS07520	COG1254	Belongs to the acylphosphatase family
BMF34_RS07535	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BMF34_RS07555	COG2826	transposase and inactivated derivatives, IS30 family
BMF34_RS07585	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BMF34_RS07595	COG1484	DNA-dependent DNA replication
BMF34_RS07605	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BMF34_RS07615	COG0745	RESPONSE REGULATOR receiver
BMF34_RS07625	COG0501	Belongs to the peptidase M48B family
BMF34_RS07630	COG1704	LemA family
BMF34_RS07640	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BMF34_RS07645	COG0569	domain protein
BMF34_RS07655	COG1114	Component of the transport system for branched-chain amino acids
BMF34_RS07670	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BMF34_RS07675	COG1464	Belongs to the NlpA lipoprotein family
BMF34_RS07680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BMF34_RS07695	COG0789	Transcriptional regulator
BMF34_RS07710	COG2226	methyltransferase
BMF34_RS07715	COG0799	negative regulation of ribosome biogenesis
BMF34_RS07720	COG1713	HD superfamily hydrolase involved in NAD metabolism
BMF34_RS07730	COG1534	Rna-binding protein
BMF34_RS07735	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BMF34_RS07740	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
BMF34_RS07780	COG2801	Transposase and inactivated derivatives
BMF34_RS07795	COG1040	competence protein
BMF34_RS07800	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
BMF34_RS07805	COG1739	Uncharacterized protein family UPF0029
BMF34_RS07820	COG1098	S1 RNA binding domain
BMF34_RS07830	COG2197	response regulator
BMF34_RS07835	COG4585	Histidine kinase
BMF34_RS07845	COG2815	serine threonine protein kinase
BMF34_RS07845	COG0515	serine threonine protein kinase
BMF34_RS07855	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BMF34_RS07855	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BMF34_RS07865	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BMF34_RS07870	COG1758	RNA polymerase activity
BMF34_RS07885	COG1854	S-ribosylhomocysteine lyase activity
BMF34_RS07895	COG0116	Belongs to the methyltransferase superfamily
BMF34_RS07910	COG4474	Belongs to the UPF0398 family
BMF34_RS07915	COG3331	DNA recombination
BMF34_RS07920	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BMF34_RS07925	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BMF34_RS07930	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BMF34_RS07945	COG1113	amino acid transport
BMF34_RS07950	COG0492	ferredoxin-NADP+ reductase activity
BMF34_RS07960	COG1126	abc transporter atp-binding protein
BMF34_RS07965	COG0765	amino acid transport
BMF34_RS07970	COG0513	Belongs to the DEAD box helicase family
BMF34_RS07975	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BMF34_RS07980	COG0768	penicillin binding
BMF34_RS07990	COG0275	rRNA processing
BMF34_RS08000	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BMF34_RS08010	COG1131	(ABC) transporter
BMF34_RS08030	COG0446	pyridine nucleotide-disulphide oxidoreductase
BMF34_RS08035	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BMF34_RS08060	COG0751	glycine-tRNA ligase activity
BMF34_RS08070	COG1755	Isoprenylcysteine carboxyl methyltransferase
BMF34_RS08075	COG0656	L-ascorbic acid biosynthetic process
BMF34_RS08090	COG0561	phosphatase activity
BMF34_RS08100	COG3250	beta-galactosidase activity
BMF34_RS08135	COG2740	Nucleic-acid-binding protein implicated in transcription termination
BMF34_RS08140	COG0195	Participates in both transcription termination and antitermination
BMF34_RS08145	COG0779	Required for maturation of 30S ribosomal subunits
BMF34_RS08150	COG1368	sulfuric ester hydrolase activity
BMF34_RS08190	COG1131	(ABC) transporter
BMF34_RS08195	COG0537	adenosine 5'-monophosphoramidase activity
BMF34_RS08205	COG1316	TRANSCRIPTIONal
BMF34_RS08215	COG0802	atpase or kinase
BMF34_RS08220	COG2252	PERMEase
BMF34_RS08225	COG0561	phosphatase activity
BMF34_RS08240	COG3715	PTS system
BMF34_RS08245	COG3716	PTS system mannose fructose sorbose family IID component
BMF34_RS08260	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BMF34_RS08280	COG0439	Biotin carboxylase
BMF34_RS08295	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BMF34_RS08300	COG1028	Short-chain dehydrogenase reductase Sdr
BMF34_RS08305	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BMF34_RS08320	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BMF34_RS08330	COG1024	Enoyl-CoA hydratase
BMF34_RS08335	COG0484	heat shock protein binding
BMF34_RS08345	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BMF34_RS08350	COG1420	regulation of RNA biosynthetic process
BMF34_RS08355	COG1388	LysM domain
BMF34_RS08355	COG1705	Flagellar rod assembly protein muramidase FlgJ
BMF34_RS08365	COG0588	phosphoglycerate mutase activity
BMF34_RS08370	COG2848	UPF0210 protein
BMF34_RS08375	COG3830	Belongs to the UPF0237 family
BMF34_RS08380	COG2261	transglycosylase associated protein
BMF34_RS08395	COG0154	amidase activity
BMF34_RS08400	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BMF34_RS08405	COG0574	Belongs to the PEP-utilizing enzyme family
BMF34_RS08405	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BMF34_RS08410	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BMF34_RS08415	COG0517	IMP dehydrogenase activity
BMF34_RS08420	COG1054	Belongs to the UPF0176 family
BMF34_RS08435	COG1937	Protein conserved in bacteria
BMF34_RS08440	COG1335	isochorismatase
BMF34_RS08445	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BMF34_RS08450	COG0436	Aminotransferase
BMF34_RS08455	COG0589	response to stress
BMF34_RS08460	COG0561	phosphatase activity
BMF34_RS08470	COG0252	asparaginase activity
BMF34_RS08475	COG4989	oxidoreductase activity
BMF34_RS08480	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BMF34_RS08485	COG1129	ABC transporter
BMF34_RS08500	COG1132	(ABC) transporter
BMF34_RS08505	COG4988	ABC transporter
BMF34_RS08510	COG1120	ATPase activity
BMF34_RS08535	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BMF34_RS08540	COG0736	holo-[acyl-carrier-protein] synthase activity
BMF34_RS08545	COG0653	protein targeting
BMF34_RS08550	COG1482	cell wall glycoprotein biosynthetic process
BMF34_RS08555	COG1940	carbohydrate kinase activity
BMF34_RS08560	COG1263	PTS System
BMF34_RS08560	COG2190	(PTS) system
BMF34_RS08560	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS08565	COG1621	beta-fructofuranosidase activity
BMF34_RS08570	COG1609	Transcriptional regulator
BMF34_RS08575	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BMF34_RS08595	COG2131	deaminase
BMF34_RS08600	COG0006	proline dipeptidase activity
BMF34_RS08630	COG1368	sulfuric ester hydrolase activity
BMF34_RS08655	COG1194	a g-specific adenine glycosylase
BMF34_RS08665	COG3118	belongs to the thioredoxin family
BMF34_RS08670	COG1193	negative regulation of DNA recombination
BMF34_RS08685	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BMF34_RS08690	COG0681	Belongs to the peptidase S26 family
BMF34_RS08695	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BMF34_RS08710	COG1882	Formate acetyltransferase
BMF34_RS08725	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BMF34_RS08740	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BMF34_RS08745	COG2936	dipeptidyl-peptidase activity
BMF34_RS08760	COG1705	Flagellar rod assembly protein muramidase FlgJ
BMF34_RS08760	COG3942	CHAP domain
BMF34_RS08890	COG2801	Transposase and inactivated derivatives
BMF34_RS08895	COG2963	transposase activity
BMF34_RS08910	COG3328	transposase activity
BMF34_RS08915	COG0515	serine threonine protein kinase
BMF34_RS08925	COG1476	TRANSCRIPTIONal
BMF34_RS08960	COG0582	viral genome integration into host DNA
BMF34_RS08990	COG2081	HI0933 family
BMF34_RS09010	COG1214	PFAM Peptidase M22, glycoprotease
BMF34_RS09020	COG5503	Protein of unknown function (DUF1447)
BMF34_RS09030	COG4608	Belongs to the ABC transporter superfamily
BMF34_RS09035	COG0444	Belongs to the ABC transporter superfamily
BMF34_RS09040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BMF34_RS09045	COG0601	transmembrane transport
BMF34_RS09050	COG4166	transmembrane transport
BMF34_RS09055	COG0174	glutamine synthetase
BMF34_RS09060	COG0789	Transcriptional regulator
BMF34_RS09075	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BMF34_RS09105	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BMF34_RS09135	COG1288	antiporter activity
BMF34_RS09140	COG0549	Belongs to the carbamate kinase family
BMF34_RS09145	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BMF34_RS09155	COG0784	Response regulator, receiver
BMF34_RS09160	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BMF34_RS09165	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BMF34_RS09170	COG0084	hydrolase, TatD family'
BMF34_RS09185	COG2801	Transposase and inactivated derivatives
BMF34_RS09200	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BMF34_RS09215	COG0395	ABC-type sugar transport system, permease component
BMF34_RS09240	COG0395	ABC-type sugar transport system, permease component
BMF34_RS09245	COG1175	transmembrane transport
BMF34_RS09285	COG3279	Response regulator of the LytR AlgR family
BMF34_RS09295	COG1131	(ABC) transporter
BMF34_RS09310	COG0594	ribonuclease P activity
BMF34_RS09315	COG0165	Argininosuccinate lyase
BMF34_RS09375	COG0756	dUTP diphosphatase activity
BMF34_RS09380	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS09380	COG1263	PTS System
BMF34_RS09385	COG0366	Alpha amylase catalytic
BMF34_RS09395	COG1737	Transcriptional regulator
BMF34_RS09400	COG2832	Protein of unknown function (DUF454)
BMF34_RS09430	COG1132	(ABC) transporter
BMF34_RS09435	COG1132	(ABC) transporter
BMF34_RS09445	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BMF34_RS09450	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BMF34_RS09465	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BMF34_RS09470	COG1215	transferase activity, transferring glycosyl groups
BMF34_RS09475	COG1473	amidohydrolase
BMF34_RS09485	COG0166	Belongs to the GPI family
BMF34_RS09535	COG1234	tRNA 3'-trailer cleavage
BMF34_RS09540	COG1268	BioY protein
BMF34_RS09555	COG0343	queuine tRNA-ribosyltransferase activity
BMF34_RS09565	COG0735	belongs to the Fur family
BMF34_RS09570	COG1832	CoA-binding protein
BMF34_RS09575	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BMF34_RS09575	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BMF34_RS09585	COG4175	Glycine betaine
BMF34_RS09585	COG3448	diguanylate cyclase activity
BMF34_RS09590	COG1597	lipid kinase activity
BMF34_RS09600	COG0415	Belongs to the DNA photolyase family
BMF34_RS09625	COG3775	system Galactitol-specific IIC component
BMF34_RS09630	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BMF34_RS09640	COG1609	Transcriptional regulator
BMF34_RS09650	COG3623	hexulose-6-phosphate isomerase
BMF34_RS09660	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS09675	COG1929	Belongs to the glycerate kinase type-1 family
BMF34_RS09685	COG2964	Protein conserved in bacteria
BMF34_RS09690	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BMF34_RS09695	COG0626	cystathionine gamma-synthase activity
BMF34_RS09700	COG0251	oxidation-reduction process
BMF34_RS09710	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BMF34_RS09735	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BMF34_RS09750	COG0564	pseudouridine synthase activity
BMF34_RS09775	COG0459	protein refolding
BMF34_RS09785	COG0542	response to heat
BMF34_RS09790	COG4463	regulation of RNA biosynthetic process
BMF34_RS09805	COG0025	NhaP-type Na H and K H
BMF34_RS09815	COG0450	alkyl hydroperoxide reductase
BMF34_RS09835	COG2801	Transposase and inactivated derivatives
BMF34_RS09845	COG3590	peptidase
BMF34_RS09850	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BMF34_RS09855	COG3959	Transketolase, thiamine diphosphate binding domain
BMF34_RS09870	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BMF34_RS09875	COG0366	Alpha amylase catalytic
BMF34_RS09880	COG1263	PTS System
BMF34_RS09880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BMF34_RS09885	COG2188	Transcriptional regulator
BMF34_RS09895	COG0602	queuosine metabolic process
BMF34_RS09905	COG0673	inositol 2-dehydrogenase activity
BMF34_RS09910	COG1328	CTP reductase activity
BMF34_RS09940	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BMF34_RS09945	COG4472	Bacterial protein of unknown function (DUF965)
BMF34_RS09950	COG1393	Belongs to the ArsC family
BMF34_RS09955	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BMF34_RS09965	COG0519	Catalyzes the synthesis of GMP from XMP
BMF34_RS09980	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BMF34_RS10000	COG0018	arginyl-trna synthetase
BMF34_RS10005	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BMF34_RS10015	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BMF34_RS10045	COG2801	Transposase and inactivated derivatives
BMF34_RS10060	COG5002	protein histidine kinase activity
BMF34_RS10100	COG3759	membrane
BMF34_RS10110	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BMF34_RS10120	COG0305	Participates in initiation and elongation during chromosome replication
BMF34_RS10125	COG0359	binds to the 23S rRNA
BMF34_RS10150	COG1760	l-serine dehydratase
BMF34_RS10155	COG1760	l-serine dehydratase
BMF34_RS10165	COG0741	lytic transglycosylase activity
BMF34_RS10185	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BMF34_RS10195	COG0612	Peptidase, M16
BMF34_RS10200	COG0612	Peptidase, M16
BMF34_RS10230	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BMF34_RS10235	COG0488	(ABC) transporter
BMF34_RS10265	COG3328	transposase activity
BMF34_RS10270	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BMF34_RS10275	COG1475	DNA binding