SIR_RS09750 SM00382 ATPases associated with a variety of cellular activities SIR_RS09750 SM00760 Bacterial dnaA protein helix-turn-helix domain SIR_RS09755 SM00480 DNA polymerase III beta subunit SIR_RS09780 SM00487 DEAD-like helicases superfamily SIR_RS09780 SM00490 helicase superfamily c-terminal domain SIR_RS09780 SM00982 SIR_RS09780 SIR_RS09780 SM01058 CarD-like/TRCF domain SIR_RS09785 SM00363 S4 RNA-binding domain SIR_RS09800 SM00977 TilS substrate C-terminal domain SIR_RS09810 SM00382 ATPases associated with a variety of cellular activities SIR_RS09945 SM01400 SIR_RS09945 SIR_RS09975 SM01211 SIR_RS09975 SIR_RS10005 SM00798 AICARFT/IMPCHase bienzyme SIR_RS10005 SM00851 MGS-like domain SIR_RS10035 SM01209 SIR_RS10035 SIR_RS10035 SM01210 SIR_RS10035 SIR_RS10040 SM01001 AIR carboxylase SIR_RS10075 SM00998 Adenylosuccinate lyase C-terminus SIR_RS10080 SM00345 helix_turn_helix gluconate operon transcriptional repressor SIR_RS10080 SM00866 SIR_RS10080 SIR_RS10115 SM01133 SIR_RS10115 SIR_RS10130 SM00382 ATPases associated with a variety of cellular activities SIR_RS10155 SM00226 Low molecular weight phosphatase family SIR_RS10160 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SIR_RS10205 SM01130 SIR_RS10205 SIR_RS10320 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS10325 SM00382 ATPases associated with a variety of cellular activities SIR_RS10370 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SIR_RS10370 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SIR_RS10405 SM00382 ATPases associated with a variety of cellular activities SIR_RS10405 SM01086 C-terminal, D2-small domain, of ClpB protein SIR_RS10440 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS10465 SM00382 ATPases associated with a variety of cellular activities SIR_RS10490 SM00788 Adenylosuccinate synthetase SIR_RS10545 SM00393 Putative single-stranded nucleic acids-binding domain SIR_RS10545 SM01245 SIR_RS10545 SIR_RS10570 SM00493 SIR_RS10570 SIR_RS10755 SM00650 Ribosomal RNA adenine dimethylases SIR_RS10780 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SIR_RS10810 SM00838 Elongation factor G C-terminus SIR_RS10810 SM00889 Elongation factor G, domain IV SIR_RS10815 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SIR_RS10820 SM00849 Metallo-beta-lactamase superfamily SIR_RS10865 SM00422 helix_turn_helix, mercury resistance SIR_RS10910 SM00382 ATPases associated with a variety of cellular activities SIR_RS10915 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS10925 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SIR_RS10925 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SIR_RS11025 SM00463 Small MutS-related domain SIR_RS11025 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SIR_RS11025 SM00534 ATPase domain of DNA mismatch repair MUTS family SIR_RS11075 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIR_RS11105 SM00382 ATPases associated with a variety of cellular activities SIR_RS11160 SM00342 helix_turn_helix, arabinose operon control protein SIR_RS11185 SM00382 ATPases associated with a variety of cellular activities SIR_RS11205 SM00448 cheY-homologous receiver domain SIR_RS11205 SM00862 Transcriptional regulatory protein, C terminal SIR_RS11210 SM00387 Histidine kinase-like ATPases SIR_RS11210 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS11220 SM00382 ATPases associated with a variety of cellular activities SIR_RS11225 SM00642 Alpha-amylase domain SIR_RS11235 SM00382 ATPases associated with a variety of cellular activities SIR_RS11315 SM00382 ATPases associated with a variety of cellular activities SIR_RS11330 SM00841 Elongation factor P, C-terminal SIR_RS11330 SM01185 SIR_RS11330 SIR_RS11435 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS11460 SM00382 ATPases associated with a variety of cellular activities SIR_RS11510 SM01350 SIR_RS11510 SIR_RS11515 SM00448 cheY-homologous receiver domain SIR_RS11515 SM00862 Transcriptional regulatory protein, C terminal SIR_RS11565 SM00487 DEAD-like helicases superfamily SIR_RS11565 SM00490 helicase superfamily c-terminal domain SIR_RS11615 SM00967 RNA 2'-O ribose methyltransferase substrate binding SIR_RS11655 SM00116 Domain in cystathionine beta-synthase and other proteins. SIR_RS11675 SM00363 S4 RNA-binding domain SIR_RS11680 SM01234 SIR_RS11680 SIR_RS11705 SM00014 Acid phosphatase homologues SIR_RS11715 SM00729 Elongator protein 3, MiaB family, Radical SAM SIR_RS11755 SM00382 ATPases associated with a variety of cellular activities SIR_RS11755 SM01086 C-terminal, D2-small domain, of ClpB protein SIR_RS11780 SM00382 ATPases associated with a variety of cellular activities SIR_RS11800 SM00354 helix_turn _helix lactose operon repressor SIR_RS11820 SM00640 Glycosyl hydrolases family 32 SIR_RS11830 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS11875 SM00382 ATPases associated with a variety of cellular activities SIR_RS11895 SM00411 bacterial (prokaryotic) histone like domain SIR_RS11905 SM00855 Phosphoglycerate mutase family SIR_RS11915 SM00493 SIR_RS11915 SIR_RS11945 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS11970 SM00487 DEAD-like helicases superfamily SIR_RS11970 SM00490 helicase superfamily c-terminal domain SIR_RS11975 SM01133 SIR_RS11975 SIR_RS11980 SM00420 helix_turn_helix, Deoxyribose operon repressor SIR_RS11980 SM01134 SIR_RS11980 SIR_RS12020 SM01061 CAT RNA binding domain SIR_RS12080 SM00028 Tetratricopeptide repeats SIR_RS12110 SM00382 ATPases associated with a variety of cellular activities SIR_RS12155 SM00382 ATPases associated with a variety of cellular activities SIR_RS12175 SM00642 Alpha-amylase domain SIR_RS12230 SM00382 ATPases associated with a variety of cellular activities SIR_RS12240 SM00327 von Willebrand factor (vWF) type A domain SIR_RS12265 SM00892 DNA/RNA non-specific endonuclease SIR_RS12270 SM00382 ATPases associated with a variety of cellular activities SIR_RS12275 SM00382 ATPases associated with a variety of cellular activities SIR_RS12330 SM00420 helix_turn_helix, Deoxyribose operon repressor SIR_RS12330 SM01134 SIR_RS12330 SIR_RS12365 SM00382 ATPases associated with a variety of cellular activities SIR_RS12380 SM00873 B3/4 domain SIR_RS12380 SM00874 tRNA synthetase B5 domain SIR_RS12380 SM00896 Ferredoxin-fold anticodon binding domain SIR_RS12420 SM00855 Phosphoglycerate mutase family SIR_RS12455 SM00481 DNA polymerase alpha chain like domain SIR_RS12500 SM00382 ATPases associated with a variety of cellular activities SIR_RS12505 SM00382 ATPases associated with a variety of cellular activities SIR_RS12540 SM00904 Riboflavin kinase SIR_RS12580 SM00382 ATPases associated with a variety of cellular activities SIR_RS12585 SM00382 ATPases associated with a variety of cellular activities SIR_RS12610 SM00881 CoA binding domain SIR_RS12625 SM01400 SIR_RS12625 SIR_RS12630 SM01118 SIR_RS12630 SIR_RS12635 SM00954 Region found in RelA / SpoT proteins SIR_RS12655 SM00478 endonuclease III SIR_RS12715 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS12720 SM00919 Malic enzyme, NAD binding domain SIR_RS12720 SM01274 SIR_RS12720 SIR_RS12750 SM01260 SIR_RS12750 SIR_RS12755 SM00382 ATPases associated with a variety of cellular activities SIR_RS12790 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS12790 SM00732 Likely ribonuclease with RNase H fold. SIR_RS12795 SM00731 SprT homologues. SIR_RS12845 SM00849 Metallo-beta-lactamase superfamily SIR_RS12865 SM00382 ATPases associated with a variety of cellular activities SIR_RS12920 SM00257 Lysin motif SIR_RS12955 SM00487 DEAD-like helicases superfamily SIR_RS12955 SM00490 helicase superfamily c-terminal domain SIR_RS12985 SM00838 Elongation factor G C-terminus SIR_RS12995 SM00382 ATPases associated with a variety of cellular activities SIR_RS13015 SM00859 Semialdehyde dehydrogenase, NAD binding domain SIR_RS13020 SM01130 SIR_RS13020 SIR_RS13030 SM00342 helix_turn_helix, arabinose operon control protein SIR_RS13030 SM00871 Bacterial transcription activator, effector binding domain SIR_RS13050 SM00382 ATPases associated with a variety of cellular activities SIR_RS13090 SM00382 ATPases associated with a variety of cellular activities SIR_RS13140 SM00354 helix_turn _helix lactose operon repressor SIR_RS13210 SM00487 DEAD-like helicases superfamily SIR_RS13220 SM00487 DEAD-like helicases superfamily SIR_RS13220 SM00490 helicase superfamily c-terminal domain SIR_RS13290 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SIR_RS13330 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SIR_RS13330 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SIR_RS13345 SM00382 ATPases associated with a variety of cellular activities SIR_RS13350 SM00382 ATPases associated with a variety of cellular activities SIR_RS13385 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SIR_RS13385 SM01232 SIR_RS13385 SIR_RS13405 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS13405 SM00955 SIR_RS13405 SIR_RS13415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SIR_RS13420 SM00849 Metallo-beta-lactamase superfamily SIR_RS13435 SM00986 Uracil DNA glycosylase superfamily SIR_RS13435 SM00987 UreE urease accessory protein, C-terminal domain SIR_RS13465 SM00116 Domain in cystathionine beta-synthase and other proteins. SIR_RS13480 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS13485 SM00873 B3/4 domain SIR_RS13520 SM00292 breast cancer carboxy-terminal domain SIR_RS13520 SM00532 Ligase N family SIR_RS13525 SM00046 Diacylglycerol kinase catalytic domain (presumed) SIR_RS13530 SM00642 Alpha-amylase domain SIR_RS13570 SM00382 ATPases associated with a variety of cellular activities SIR_RS13575 SM00382 ATPases associated with a variety of cellular activities SIR_RS13580 SM00345 helix_turn_helix gluconate operon transcriptional repressor SIR_RS13630 SM01266 SIR_RS13630 SIR_RS13640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SIR_RS13640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SIR_RS13640 SM00493 SIR_RS13640 SIR_RS13675 SM00382 ATPases associated with a variety of cellular activities SIR_RS13675 SM00962 SRP54-type protein, GTPase domain SIR_RS13675 SM00963 SRP54-type protein, helical bundle domain SIR_RS13685 SM00345 helix_turn_helix gluconate operon transcriptional repressor SIR_RS13685 SM00866 SIR_RS13685 SIR_RS13725 SM00937 SIR_RS13725 SIR_RS13755 SM01240 SIR_RS13755 SIR_RS13795 SM00382 ATPases associated with a variety of cellular activities SIR_RS13810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SIR_RS13810 SM00387 Histidine kinase-like ATPases SIR_RS13815 SM00342 helix_turn_helix, arabinose operon control protein SIR_RS13815 SM00448 cheY-homologous receiver domain SIR_RS13850 SM00400 zinc finger SIR_RS13850 SM00493 SIR_RS13850 SIR_RS13870 SM00434 DNA Topoisomerase IV SIR_RS13890 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS13915 SM00434 DNA Topoisomerase IV SIR_RS13925 SM00387 Histidine kinase-like ATPases SIR_RS13925 SM00433 TopoisomeraseII SIR_RS13930 SM01207 SIR_RS13930 SIR_RS13970 SM01192 SIR_RS13970 SIR_RS13970 SM01193 SIR_RS13970 SIR_RS14030 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS14065 SM00382 ATPases associated with a variety of cellular activities SIR_RS14080 SM01133 SIR_RS14080 SIR_RS14085 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SIR_RS14110 SM00642 Alpha-amylase domain SIR_RS14115 SM00387 Histidine kinase-like ATPases SIR_RS14115 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS14120 SM00448 cheY-homologous receiver domain SIR_RS14120 SM00862 Transcriptional regulatory protein, C terminal SIR_RS14150 SM00851 MGS-like domain SIR_RS14150 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SIR_RS14150 SM01209 SIR_RS14150 SIR_RS14155 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SIR_RS14175 SM00365 Leucine-rich repeat, SDS22-like subfamily SIR_RS14195 SM00562 SIR_RS14195 SIR_RS14225 SM00729 Elongator protein 3, MiaB family, Radical SAM SIR_RS14245 SM00487 DEAD-like helicases superfamily SIR_RS14245 SM00490 helicase superfamily c-terminal domain SIR_RS14250 SM00062 Bacterial periplasmic substrate-binding proteins SIR_RS14250 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SIR_RS14250 SM00918 Ligated ion channel L-glutamate- and glycine-binding site SIR_RS14255 SM00382 ATPases associated with a variety of cellular activities SIR_RS14260 SM00382 ATPases associated with a variety of cellular activities SIR_RS14265 SM00382 ATPases associated with a variety of cellular activities SIR_RS14270 SM00382 ATPases associated with a variety of cellular activities SIR_RS14280 SM00047 Lysozyme subfamily 2 SIR_RS14290 SM00382 ATPases associated with a variety of cellular activities SIR_RS14290 SM00994 ClpX C4-type zinc finger SIR_RS14290 SM01086 C-terminal, D2-small domain, of ClpB protein SIR_RS14315 SM00830 Chorismate mutase type II SIR_RS14345 SM00363 S4 RNA-binding domain SIR_RS14370 SM00450 Rhodanese Homology Domain SIR_RS14375 SM00450 Rhodanese Homology Domain SIR_RS14400 SM00981 SIR_RS14400 SIR_RS14420 SM00116 Domain in cystathionine beta-synthase and other proteins. SIR_RS14420 SM00420 helix_turn_helix, Deoxyribose operon repressor SIR_RS14435 SM00382 ATPases associated with a variety of cellular activities SIR_RS14435 SM00962 SRP54-type protein, GTPase domain SIR_RS14435 SM00963 SRP54-type protein, helical bundle domain SIR_RS14450 SM00968 SMC proteins Flexible Hinge Domain SIR_RS14455 SM00358 Double-stranded RNA binding motif SIR_RS14455 SM00535 Ribonuclease III family SIR_RS14465 SM00849 Metallo-beta-lactamase superfamily SIR_RS14470 SM00091 PAS domain SIR_RS14470 SM00387 Histidine kinase-like ATPases SIR_RS14470 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS14475 SM00448 cheY-homologous receiver domain SIR_RS14475 SM00862 Transcriptional regulatory protein, C terminal SIR_RS14495 SM00354 helix_turn _helix lactose operon repressor SIR_RS14555 SM00382 ATPases associated with a variety of cellular activities SIR_RS14650 SM00382 ATPases associated with a variety of cellular activities SIR_RS14655 SM00387 Histidine kinase-like ATPases SIR_RS14655 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS14660 SM00448 cheY-homologous receiver domain SIR_RS14660 SM00862 Transcriptional regulatory protein, C terminal SIR_RS14680 SM00857 Resolvase, N terminal domain SIR_RS14730 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS14740 SM00487 DEAD-like helicases superfamily SIR_RS14740 SM00490 helicase superfamily c-terminal domain SIR_RS14750 SM00966 SpoVT / AbrB like domain SIR_RS14755 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SIR_RS14755 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SIR_RS14755 SM00493 SIR_RS14755 SIR_RS14950 SM00641 Glycosyl hydrolases family 25 SIR_RS14995 SM00382 ATPases associated with a variety of cellular activities SIR_RS15005 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS15010 SM00986 Uracil DNA glycosylase superfamily SIR_RS15010 SM00987 UreE urease accessory protein, C-terminal domain SIR_RS15030 SM00465 GIY-YIG type nucleases (URI domain) SIR_RS15085 SM00563 Phosphate acyltransferases SIR_RS15105 SM00855 Phosphoglycerate mutase family SIR_RS15150 SM00342 helix_turn_helix, arabinose operon control protein SIR_RS15150 SM00448 cheY-homologous receiver domain SIR_RS15190 SM00872 Alpha mannosidase, middle domain SIR_RS15195 SM01149 SIR_RS15195 SIR_RS15275 SM00420 helix_turn_helix, Deoxyribose operon repressor SIR_RS15275 SM01134 SIR_RS15275 SIR_RS15295 SM00382 ATPases associated with a variety of cellular activities SIR_RS15305 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SIR_RS15315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SIR_RS15315 SM00387 Histidine kinase-like ATPases SIR_RS15315 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS15320 SM00448 cheY-homologous receiver domain SIR_RS15320 SM00862 Transcriptional regulatory protein, C terminal SIR_RS15335 SM00387 Histidine kinase-like ATPases SIR_RS15335 SM00433 TopoisomeraseII SIR_RS15360 SM00479 SIR_RS15360 SIR_RS15360 SM00487 DEAD-like helicases superfamily SIR_RS15360 SM00491 SIR_RS15360 SIR_RS15365 SM00849 Metallo-beta-lactamase superfamily SIR_RS15375 SM00382 ATPases associated with a variety of cellular activities SIR_RS15380 SM00937 SIR_RS15380 SIR_RS15390 SM00831 Cation transporter/ATPase, N-terminus SIR_RS15400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SIR_RS15420 SM00382 ATPases associated with a variety of cellular activities SIR_RS15425 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SIR_RS15540 SM00419 helix_turn_helix, cAMP Regulatory protein SIR_RS15605 SM00448 cheY-homologous receiver domain SIR_RS15605 SM00850 LytTr DNA-binding domain SIR_RS15625 SM00382 ATPases associated with a variety of cellular activities SIR_RS15665 SM00649 Ribosomal protein L11/L12 SIR_RS15680 SM00382 ATPases associated with a variety of cellular activities SIR_RS15680 SM00843 SIR_RS15680 SIR_RS15705 SM00382 ATPases associated with a variety of cellular activities SIR_RS15735 SM01022 SIR_RS15735 SIR_RS15765 SM00357 Cold shock protein domain SIR_RS15795 SM00382 ATPases associated with a variety of cellular activities SIR_RS15810 SM00850 LytTr DNA-binding domain SIR_RS15820 SM00382 ATPases associated with a variety of cellular activities SIR_RS15830 SM00382 ATPases associated with a variety of cellular activities SIR_RS15840 SM00387 Histidine kinase-like ATPases SIR_RS15845 SM00448 cheY-homologous receiver domain SIR_RS15845 SM00862 Transcriptional regulatory protein, C terminal SIR_RS15880 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SIR_RS15905 SM00478 endonuclease III SIR_RS15945 SM00116 Domain in cystathionine beta-synthase and other proteins. SIR_RS15950 SM00382 ATPases associated with a variety of cellular activities SIR_RS15955 SM00382 ATPases associated with a variety of cellular activities SIR_RS15990 SM00831 Cation transporter/ATPase, N-terminus SIR_RS16025 SM01131 SIR_RS16025 SIR_RS16040 SM00642 Alpha-amylase domain SIR_RS16050 SM00345 helix_turn_helix gluconate operon transcriptional repressor SIR_RS16050 SM00866 SIR_RS16050 SIR_RS16055 SM01091 Transporter associated domain SIR_RS16080 SM00363 S4 RNA-binding domain SIR_RS16100 SM00864 Tubulin/FtsZ family, GTPase domain SIR_RS16100 SM00865 Tubulin/FtsZ family, C-terminal domain SIR_RS16105 SM00842 Cell division protein FtsA SIR_RS16130 SM00838 Elongation factor G C-terminus SIR_RS16140 SM00450 Rhodanese Homology Domain SIR_RS16200 SM00487 DEAD-like helicases superfamily SIR_RS16200 SM00490 helicase superfamily c-terminal domain SIR_RS16305 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS16315 SM00421 helix_turn_helix, Lux Regulon SIR_RS16315 SM00448 cheY-homologous receiver domain SIR_RS16320 SM00387 Histidine kinase-like ATPases SIR_RS16330 SM00220 Serine/Threonine protein kinases, catalytic domain SIR_RS16330 SM00740 SIR_RS16330 SIR_RS16335 SM00331 Sigma factor PP2C-like phosphatases SIR_RS16335 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SIR_RS16350 SM00487 DEAD-like helicases superfamily SIR_RS16350 SM00490 helicase superfamily c-terminal domain SIR_RS16355 SM01409 SIR_RS16355 SIR_RS16360 SM00072 Guanylate kinase homologues. SIR_RS16365 SM00322 K homology RNA-binding domain SIR_RS16365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SIR_RS16375 SM00857 Resolvase, N terminal domain SIR_RS16380 SM00857 Resolvase, N terminal domain SIR_RS16385 SM00857 Resolvase, N terminal domain SIR_RS16415 SM00729 Elongator protein 3, MiaB family, Radical SAM SIR_RS16425 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS16435 SM00382 ATPases associated with a variety of cellular activities SIR_RS16440 SM00729 Elongator protein 3, MiaB family, Radical SAM SIR_RS16465 SM00487 DEAD-like helicases superfamily SIR_RS16465 SM00490 helicase superfamily c-terminal domain SIR_RS16475 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SIR_RS16475 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SIR_RS16475 SM00493 SIR_RS16475 SIR_RS16535 SM01040 BRO family, N-terminal domain SIR_RS16575 SM00981 SIR_RS16575 SIR_RS16640 SM00382 ATPases associated with a variety of cellular activities SIR_RS16650 SM00487 DEAD-like helicases superfamily SIR_RS16650 SM00490 helicase superfamily c-terminal domain SIR_RS16655 SM00936 Penicillin-binding protein 5, C-terminal domain SIR_RS16675 SM00382 ATPases associated with a variety of cellular activities SIR_RS16700 SM00062 Bacterial periplasmic substrate-binding proteins SIR_RS16705 SM00382 ATPases associated with a variety of cellular activities SIR_RS16715 SM00244 prohibitin homologues SIR_RS16720 SM00421 helix_turn_helix, Lux Regulon SIR_RS16720 SM00448 cheY-homologous receiver domain SIR_RS16735 SM00382 ATPases associated with a variety of cellular activities SIR_RS16740 SM01120 SIR_RS16740 SIR_RS16740 SM01121 SIR_RS16740 SIR_RS16760 SM00850 LytTr DNA-binding domain SIR_RS16805 SM00740 SIR_RS16805 SIR_RS16820 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS16860 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS16905 SM00322 K homology RNA-binding domain SIR_RS16935 SM00382 ATPases associated with a variety of cellular activities SIR_RS16980 SM00829 Enoylreductase SIR_RS17025 SM00878 Biotin carboxylase C-terminal domain SIR_RS17040 SM00825 Beta-ketoacyl synthase SIR_RS17045 SM00822 SIR_RS17045 SIR_RS17050 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SIR_RS17070 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS17115 SM00382 ATPases associated with a variety of cellular activities SIR_RS17115 SM00930 SIR_RS17115 SIR_RS17130 SM00062 Bacterial periplasmic substrate-binding proteins SIR_RS17170 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SIR_RS17180 SM01103 SIR_RS17180 SIR_RS17205 SM00829 Enoylreductase SIR_RS17210 SM00845 GatB domain SIR_RS17255 SM00870 SIR_RS17255 SIR_RS17265 SM00487 DEAD-like helicases superfamily SIR_RS17265 SM00490 helicase superfamily c-terminal domain SIR_RS17270 SM01005 Alanine racemase, C-terminal domain SIR_RS17285 SM00957 SecA DEAD-like domain SIR_RS17285 SM00958 SecA preprotein cross-linking domain SIR_RS17335 SM00345 helix_turn_helix gluconate operon transcriptional repressor SIR_RS17335 SM00866 SIR_RS17335 SIR_RS17355 SM00382 ATPases associated with a variety of cellular activities SIR_RS17360 SM00382 ATPases associated with a variety of cellular activities SIR_RS17365 SM00347 helix_turn_helix multiple antibiotic resistance protein SIR_RS17390 SM00640 Glycosyl hydrolases family 32 SIR_RS17395 SM00354 helix_turn _helix lactose operon repressor SIR_RS17405 SM00382 ATPases associated with a variety of cellular activities SIR_RS17410 SM00382 ATPases associated with a variety of cellular activities SIR_RS17435 SM00873 B3/4 domain SIR_RS17480 SM00271 DnaJ molecular chaperone homology domain SIR_RS17505 SM00382 ATPases associated with a variety of cellular activities SIR_RS17525 SM00855 Phosphoglycerate mutase family SIR_RS17545 SM00354 helix_turn _helix lactose operon repressor SIR_RS17555 SM01323 SIR_RS17555 SIR_RS17635 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS17650 SM00382 ATPases associated with a variety of cellular activities SIR_RS17655 SM00382 ATPases associated with a variety of cellular activities SIR_RS17715 SM00382 ATPases associated with a variety of cellular activities SIR_RS17775 SM00967 RNA 2'-O ribose methyltransferase substrate binding SIR_RS17780 SM00382 ATPases associated with a variety of cellular activities SIR_RS17790 SM00535 Ribonuclease III family SIR_RS17795 SM00840 SIR_RS17795 SIR_RS17810 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS17810 SM00322 K homology RNA-binding domain SIR_RS17825 SM01387 SIR_RS17825 SIR_RS17830 SM00363 S4 RNA-binding domain SIR_RS17905 SM00479 SIR_RS17905 SIR_RS17905 SM00481 DNA polymerase alpha chain like domain SIR_RS17915 SM00642 Alpha-amylase domain SIR_RS17930 SM00382 ATPases associated with a variety of cellular activities SIR_RS17945 SM00529 Helix-turn-helix diphteria tox regulatory element SIR_RS17945 SM00899 SIR_RS17945 SIR_RS17955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SIR_RS17955 SM00954 Region found in RelA / SpoT proteins SIR_RS17985 SM00382 ATPases associated with a variety of cellular activities SIR_RS18000 SM00354 helix_turn _helix lactose operon repressor SIR_RS18020 SM00883 Chaperonin 10 Kd subunit SIR_RS18055 SM00421 helix_turn_helix, Lux Regulon SIR_RS18055 SM00448 cheY-homologous receiver domain SIR_RS18060 SM00387 Histidine kinase-like ATPases SIR_RS18130 SM01323 SIR_RS18130 SIR_RS18140 SM00861 Transketolase, pyrimidine binding domain SIR_RS18155 SM01007 Class II Aldolase and Adducin N-terminal domain SIR_RS18165 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SIR_RS18185 SM00382 ATPases associated with a variety of cellular activities SIR_RS18185 SM01086 C-terminal, D2-small domain, of ClpB protein SIR_RS18245 SM01230 SIR_RS18245 SIR_RS18250 SM00422 helix_turn_helix, mercury resistance SIR_RS18260 SM00257 Lysin motif SIR_RS18275 SM00663 RNA polymerase I subunit A N-terminus SIR_RS18290 SM00363 S4 RNA-binding domain SIR_RS18325 SM00382 ATPases associated with a variety of cellular activities SIR_RS18390 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS18435 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS18605 SM00662 RNA polymerases D SIR_RS18620 SM00316 Ribosomal protein S1-like RNA-binding domain SIR_RS18675 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SIR_RS18680 SM01374 SIR_RS18680 SIR_RS18700 SM00322 K homology RNA-binding domain SIR_RS18715 SM01382 SIR_RS18715 SIR_RS18715 SM01383 SIR_RS18715 SIR_RS18735 SM01403 SIR_RS18735 SIR_RS18760 SM00881 CoA binding domain SIR_RS18765 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SIR_RS18765 SM00474 3'-5' exonuclease SIR_RS18765 SM00475 5'-3' exonuclease SIR_RS18765 SM00482 DNA polymerase A domain SIR_RS18770 SM00855 Phosphoglycerate mutase family SIR_RS18795 SM00387 Histidine kinase-like ATPases SIR_RS18795 SM00388 His Kinase A (phosphoacceptor) domain SIR_RS18800 SM00448 cheY-homologous receiver domain SIR_RS18800 SM00862 Transcriptional regulatory protein, C terminal SIR_RS18905 SM00155 Phospholipase D. Active site motifs. SIR_RS18925 SM00732 Likely ribonuclease with RNase H fold. SIR_RS18950 SM00382 ATPases associated with a variety of cellular activities SIR_RS18955 SM00852 Probable molybdopterin binding domain SIR_RS18975 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SIR_RS18980 SM00530 Helix-turn-helix XRE-family like proteins SIR_RS18990 SM00853 MutL C terminal dimerisation domain SIR_RS18990 SM01340 SIR_RS18990 SIR_RS18995 SM00850 LytTr DNA-binding domain SIR_RS19005 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SIR_RS19005 SM00534 ATPase domain of DNA mismatch repair MUTS family SIR_RS19015 SM00836 DALR anticodon binding domain SIR_RS19015 SM01016 Arginyl tRNA synthetase N terminal dom SIR_RS19065 SM00354 helix_turn _helix lactose operon repressor SIR_RS19070 SM00642 Alpha-amylase domain SIR_RS19110 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SIR_RS19160 SM00220 Serine/Threonine protein kinases, catalytic domain SIR_RS19185 SM00420 helix_turn_helix, Deoxyribose operon repressor SIR_RS19185 SM01134 SIR_RS19185 SIR_RS19300 SM00363 S4 RNA-binding domain SIR_RS19300 SM01390 SIR_RS19300 SIR_RS19330 SM01228 SIR_RS19330 SIR_RS19340 SM00257 Lysin motif SIR_RS19360 SM00257 Lysin motif SIR_RS19370 SM00382 ATPases associated with a variety of cellular activities SIR_RS19375 SM00382 ATPases associated with a variety of cellular activities SIR_RS19410 SM00116 Domain in cystathionine beta-synthase and other proteins. SIR_RS19410 SM01240 SIR_RS19410 SIR_RS19435 SM00382 ATPases associated with a variety of cellular activities SIR_RS19455 SM00448 cheY-homologous receiver domain SIR_RS19455 SM00850 LytTr DNA-binding domain SIR_RS19480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SIR_RS19485 SM00470 ParB-like nuclease domain