locus-tag class description SII_RS00005 PF00308 Bacterial dnaA protein SII_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SII_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SII_RS00010 PF02767 DNA polymerase III beta subunit, central domain SII_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SII_RS00025 PF06071 Protein of unknown function (DUF933) SII_RS00025 PF01926 50S ribosome-binding GTPase SII_RS00030 PF01195 Peptidyl-tRNA hydrolase SII_RS00035 PF17757 UvrB interaction domain SII_RS00035 PF00271 Helicase conserved C-terminal domain SII_RS00035 PF00270 DEAD/DEAH box helicase SII_RS00035 PF02559 CarD-like/TRCF domain SII_RS00035 PF03461 TRCF domain SII_RS00040 PF01479 S4 domain SII_RS00055 PF01171 PP-loop family SII_RS00060 PF00156 Phosphoribosyl transferase domain SII_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS00065 PF06480 FtsH Extracellular SII_RS00065 PF01434 Peptidase family M41 SII_RS00065 PF17862 AAA+ lid domain SII_RS00070 PF13088 BNR repeat-like domain SII_RS00070 PF02973 Sialidase, N-terminal domain SII_RS00070 PF04650 YSIRK type signal peptide SII_RS00185 PF04085 rod shape-determining protein MreC SII_RS00195 PF05257 CHAP domain SII_RS00195 PF01476 LysM domain SII_RS00200 PF14572 Phosphoribosyl synthetase-associated domain SII_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SII_RS00205 PF00155 Aminotransferase class I and II SII_RS00210 PF11967 Recombination protein O N terminal SII_RS00210 PF02565 Recombination protein O C terminal SII_RS00215 PF02504 Fatty acid synthesis protein SII_RS00220 PF00550 Phosphopantetheine attachment site SII_RS00225 PF01259 SAICAR synthetase SII_RS00230 PF00586 AIR synthase related protein, N-terminal domain SII_RS00230 PF02769 AIR synthase related protein, C-terminal domain SII_RS00230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SII_RS00240 PF00156 Phosphoribosyl transferase domain SII_RS00245 PF02769 AIR synthase related protein, C-terminal domain SII_RS00245 PF00586 AIR synthase related protein, N-terminal domain SII_RS00250 PF00551 Formyl transferase SII_RS00260 PF01808 AICARFT/IMPCHase bienzyme SII_RS00260 PF02142 MGS-like domain SII_RS00265 PF01476 LysM domain SII_RS00265 PF05257 CHAP domain SII_RS00270 PF02844 Phosphoribosylglycinamide synthetase, N domain SII_RS00270 PF02843 Phosphoribosylglycinamide synthetase, C domain SII_RS00270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SII_RS00275 PF00731 AIR carboxylase SII_RS00280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SII_RS00280 PF02222 ATP-grasp domain SII_RS00280 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SII_RS00300 PF00206 Lyase SII_RS00300 PF10397 Adenylosuccinate lyase C-terminus SII_RS00305 PF02733 Dak1 domain SII_RS00315 PF02733 Dak1 domain SII_RS00320 PF02734 DAK2 domain SII_RS00325 PF03610 PTS system fructose IIA component SII_RS00330 PF00230 Major intrinsic protein SII_RS00335 PF07702 UTRA domain SII_RS00335 PF00392 Bacterial regulatory proteins, gntR family SII_RS00340 PF01301 Glycosyl hydrolases family 35 SII_RS00345 PF03830 PTS system sorbose subfamily IIB component SII_RS00350 PF03609 PTS system sorbose-specific iic component SII_RS00355 PF03613 PTS system mannose/fructose/sorbose family IID component SII_RS00365 PF01380 SIS domain SII_RS00370 PF01791 DeoC/LacD family aldolase SII_RS00375 PF01263 Aldose 1-epimerase SII_RS00385 PF05491 RuvB C-terminal winged helix domain SII_RS00385 PF17864 RuvB AAA lid domain SII_RS00385 PF05496 Holliday junction DNA helicase RuvB P-loop domain SII_RS00400 PF10502 Signal peptidase, peptidase S26 SII_RS00425 PF01451 Low molecular weight phosphotyrosine protein phosphatase SII_RS00435 PF01757 Acyltransferase family SII_RS00440 PF00465 Iron-containing alcohol dehydrogenase SII_RS00440 PF00171 Aldehyde dehydrogenase family SII_RS00445 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SII_RS00455 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS00460 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS00465 PF04074 YhcH/YjgK/YiaL SII_RS00475 PF00701 Dihydrodipicolinate synthetase family SII_RS00480 PF00480 ROK family SII_RS00495 PF02378 Phosphotransferase system, EIIC SII_RS00495 PF00367 phosphotransferase system, EIIB SII_RS00500 PF13580 SIS domain SII_RS00515 PF01496 V-type ATPase 116kDa subunit family SII_RS00520 PF00137 ATP synthase subunit C SII_RS00530 PF01992 ATP synthase (C/AC39) subunit SII_RS00535 PF01990 ATP synthase (F/14-kDa) subunit SII_RS00540 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS00540 PF16886 ATPsynthase alpha/beta subunit N-term extension SII_RS00540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS00545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS00545 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS00550 PF01813 ATP synthase subunit D SII_RS00555 PF00291 Pyridoxal-phosphate dependent enzyme SII_RS00555 PF14821 Threonine synthase N terminus SII_RS00565 PF13419 Haloacid dehalogenase-like hydrolase SII_RS00580 PF05737 Collagen binding domain SII_RS00580 PF17961 Bacterial Ig domain SII_RS00580 PF01476 LysM domain SII_RS00590 PF01289 Thiol-activated cytolysin SII_RS00590 PF17440 Thiol-activated cytolysin beta sandwich domain SII_RS00595 PF01047 MarR family SII_RS00600 PF00005 ABC transporter SII_RS00605 PF00950 ABC 3 transport family SII_RS00610 PF01297 Zinc-uptake complex component A periplasmic SII_RS00610 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SII_RS00615 PF03965 Penicillinase repressor SII_RS00620 PF00403 Heavy-metal-associated domain SII_RS00630 PF00849 RNA pseudouridylate synthase SII_RS00630 PF01479 S4 domain SII_RS00635 PF00912 Transglycosylase SII_RS00635 PF00905 Penicillin binding protein transpeptidase domain SII_RS00645 PF02357 Transcription termination factor nusG SII_RS00645 PF00467 KOW motif SII_RS00660 PF00318 Ribosomal protein S2 SII_RS00665 PF00889 Elongation factor TS SII_RS00675 PF05848 CtsR N-terminal HTH domain SII_RS00675 PF17727 CtsR C-terminal dimerization domain SII_RS00680 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS00680 PF17871 AAA lid domain SII_RS00680 PF07724 AAA domain (Cdc48 subfamily) SII_RS00680 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS00680 PF02861 Clp amino terminal domain, pathogenicity island component SII_RS00690 PF01207 Dihydrouridine synthase (Dus) SII_RS00695 PF01430 Hsp33 protein SII_RS00725 PF00709 Adenylosuccinate synthetase SII_RS00740 PF14437 MafB19-like deaminase SII_RS00760 PF00342 Phosphoglucose isomerase SII_RS00765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SII_RS00765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SII_RS00770 PF00825 Ribonuclease P SII_RS00775 PF02096 60Kd inner membrane protein SII_RS00795 PF00468 Ribosomal protein L34 SII_RS00800 PF01026 TatD related DNase SII_RS00805 PF13331 Domain of unknown function (DUF4093) SII_RS00810 PF06013 Proteins of 100 residues with WXG SII_RS00860 PF10140 WXG100 protein secretion system (Wss), protein YukC SII_RS00865 PF01580 FtsK/SpoIIIE family SII_RS00955 PF00398 Ribosomal RNA adenine dimethylase SII_RS00975 PF00834 Ribulose-phosphate 3 epimerase family SII_RS00980 PF04263 Thiamin pyrophosphokinase, catalytic domain SII_RS00980 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SII_RS00985 PF02646 RmuC family SII_RS00990 PF01966 HD domain SII_RS00990 PF01336 OB-fold nucleic acid binding domain SII_RS00995 PF00156 Phosphoribosyl transferase domain SII_RS00995 PF09182 Bacterial purine repressor, N-terminal SII_RS01000 PF00164 Ribosomal protein S12/S23 SII_RS01005 PF00177 Ribosomal protein S7p/S5e SII_RS01010 PF00679 Elongation factor G C-terminus SII_RS01010 PF14492 Elongation Factor G, domain II SII_RS01010 PF03764 Elongation factor G, domain IV SII_RS01010 PF00009 Elongation factor Tu GTP binding domain SII_RS01010 PF03144 Elongation factor Tu domain 2 SII_RS01015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SII_RS01015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SII_RS01020 PF17770 Ribonuclease J C-terminal domain SII_RS01020 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SII_RS01020 PF00753 Metallo-beta-lactamase superfamily SII_RS01025 PF07288 Protein of unknown function (DUF1447) SII_RS01030 PF00814 Glycoprotease family SII_RS01040 PF00814 Glycoprotease family SII_RS01055 PF01381 Helix-turn-helix SII_RS01075 PF13411 MerR HTH family regulatory protein SII_RS01075 PF07739 TipAS antibiotic-recognition domain SII_RS01080 PF00293 NUDIX domain SII_RS01080 PF13344 Haloacid dehalogenase-like hydrolase SII_RS01090 PF04394 Protein of unknown function, DUF536 SII_RS01090 PF08279 HTH domain SII_RS01100 PF03009 Glycerophosphoryl diester phosphodiesterase family SII_RS01105 PF02575 YbaB/EbfC DNA-binding family SII_RS01110 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SII_RS01110 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SII_RS01110 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SII_RS01115 PF00230 Major intrinsic protein SII_RS01130 PF00144 Beta-lactamase SII_RS01135 PF10509 Galactokinase galactose-binding signature SII_RS01135 PF00288 GHMP kinases N terminal domain SII_RS01135 PF08544 GHMP kinases C terminal SII_RS01145 PF00288 GHMP kinases N terminal domain SII_RS01145 PF08544 GHMP kinases C terminal SII_RS01150 PF01070 FMN-dependent dehydrogenase SII_RS01155 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SII_RS01160 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SII_RS01160 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SII_RS01175 PF01228 Glycine radical SII_RS01175 PF02901 Pyruvate formate lyase-like SII_RS01180 PF00817 impB/mucB/samB family SII_RS01180 PF11799 impB/mucB/samB family C-terminal domain SII_RS01185 PF13538 UvrD-like helicase C-terminal domain SII_RS01185 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SII_RS01185 PF14490 Helix-hairpin-helix containing domain SII_RS01190 PF10502 Signal peptidase, peptidase S26 SII_RS01195 PF11858 Domain of unknown function (DUF3378) SII_RS01195 PF01351 Ribonuclease HII SII_RS01210 PF00488 MutS domain V SII_RS01210 PF01713 Smr domain SII_RS01215 PF03577 Peptidase family C69 SII_RS01220 PF00085 Thioredoxin SII_RS01225 PF13520 Amino acid permease SII_RS01230 PF00924 Mechanosensitive ion channel SII_RS01235 PF10026 Predicted Zn-dependent protease (DUF2268) SII_RS01245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SII_RS01245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SII_RS01250 PF01180 Dihydroorotate dehydrogenase SII_RS01255 PF01641 SelR domain SII_RS01255 PF01625 Peptide methionine sulfoxide reductase SII_RS01260 PF01979 Amidohydrolase family SII_RS01265 PF00005 ABC transporter SII_RS01270 PF01325 Iron dependent repressor, N-terminal DNA binding domain SII_RS01270 PF00480 ROK family SII_RS01275 PF02378 Phosphotransferase system, EIIC SII_RS01285 PF00722 Glycosyl hydrolases family 16 SII_RS01290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS01295 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS01300 PF00440 Bacterial regulatory proteins, tetR family SII_RS01305 PF01554 MatE SII_RS01315 PF12833 Helix-turn-helix domain SII_RS01315 PF00072 Response regulator receiver domain SII_RS01320 PF00232 Glycosyl hydrolase family 1 SII_RS01325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS01340 PF12102 Domain of unknown function (DUF3578) SII_RS01340 PF07728 AAA domain (dynein-related subfamily) SII_RS01360 PF00072 Response regulator receiver domain SII_RS01360 PF00486 Transcriptional regulatory protein, C terminal SII_RS01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS01365 PF00512 His Kinase A (phospho-acceptor) domain SII_RS01375 PF00005 ABC transporter SII_RS01380 PF16657 Maltogenic Amylase, C-terminal domain SII_RS01380 PF00128 Alpha amylase, catalytic domain SII_RS01390 PF00005 ABC transporter SII_RS01400 PF01717 Cobalamin-independent synthase, Catalytic domain SII_RS01400 PF08267 Cobalamin-independent synthase, N-terminal domain SII_RS01410 PF02611 CDP-diacylglycerol pyrophosphatase SII_RS01440 PF01580 FtsK/SpoIIIE family SII_RS01440 PF12538 DNA transporter SII_RS01480 PF01250 Ribosomal protein S6 SII_RS01485 PF00436 Single-strand binding protein family SII_RS01490 PF01084 Ribosomal protein S18 SII_RS01510 PF17755 UvrA DNA-binding domain SII_RS01510 PF00005 ABC transporter SII_RS01510 PF17760 UvrA interaction domain SII_RS01520 PF00557 Metallopeptidase family M24 SII_RS01520 PF01321 Creatinase/Prolidase N-terminal domain SII_RS01525 PF09285 Elongation factor P, C-terminal SII_RS01525 PF01132 Elongation factor P (EF-P) OB domain SII_RS01525 PF08207 Elongation factor P (EF-P) KOW-like domain SII_RS01530 PF03780 Asp23 family, cell envelope-related function SII_RS01535 PF01029 NusB family SII_RS01625 PF07155 ECF-type riboflavin transporter, S component SII_RS01635 PF01381 Helix-turn-helix SII_RS01655 PF12558 ATP-binding cassette cobalt transporter SII_RS01655 PF00005 ABC transporter SII_RS01665 PF00106 short chain dehydrogenase SII_RS01670 PF08437 Glycosyl transferase family 8 C-terminal SII_RS01670 PF01501 Glycosyl transferase family 8 SII_RS01680 PF02527 rRNA small subunit methyltransferase G SII_RS01685 PF04011 LemA family SII_RS01690 PF01435 Peptidase family M48 SII_RS01705 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SII_RS01705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SII_RS01710 PF00072 Response regulator receiver domain SII_RS01710 PF00486 Transcriptional regulatory protein, C terminal SII_RS01715 PF02378 Phosphotransferase system, EIIC SII_RS01715 PF00367 phosphotransferase system, EIIB SII_RS01715 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS01720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS01720 PF00367 phosphotransferase system, EIIB SII_RS01720 PF02378 Phosphotransferase system, EIIC SII_RS01725 PF03372 Endonuclease/Exonuclease/phosphatase family SII_RS01735 PF03477 ATP cone domain SII_RS01745 PF01695 IstB-like ATP binding protein SII_RS01745 PF07319 Primosomal protein DnaI N-terminus SII_RS01750 PF00881 Nitroreductase family SII_RS01755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SII_RS01755 PF01926 50S ribosome-binding GTPase SII_RS01760 PF12419 SNF2 Helicase protein SII_RS01760 PF00176 SNF2 family N-terminal domain SII_RS01760 PF00271 Helicase conserved C-terminal domain SII_RS01770 PF01225 Mur ligase family, catalytic domain SII_RS01770 PF02875 Mur ligase family, glutamate ligase domain SII_RS01770 PF08245 Mur ligase middle domain SII_RS01785 PF02618 YceG-like family SII_RS01790 PF03449 Transcription elongation factor, N-terminal SII_RS01790 PF01272 Transcription elongation factor, GreA/GreB, C-term SII_RS01795 PF00293 NUDIX domain SII_RS01795 PF13344 Haloacid dehalogenase-like hydrolase SII_RS01800 PF02096 60Kd inner membrane protein SII_RS01805 PF00708 Acylphosphatase SII_RS01810 PF08032 RNA 2'-O ribose methyltransferase substrate binding SII_RS01810 PF00588 SpoU rRNA Methylase family SII_RS01820 PF01027 Inhibitor of apoptosis-promoting Bax1 SII_RS01825 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SII_RS01825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SII_RS01830 PF03672 Uncharacterised protein family (UPF0154) SII_RS01835 PF01177 Asp/Glu/Hydantoin racemase SII_RS01840 PF01725 Ham1 family SII_RS01855 PF00589 Phage integrase family SII_RS01855 PF02899 Phage integrase, N-terminal SAM-like domain SII_RS01860 PF02616 Segregation and condensation protein ScpA SII_RS01865 PF04079 Segregation and condensation complex subunit ScpB SII_RS01870 PF01479 S4 domain SII_RS01870 PF00849 RNA pseudouridylate synthase SII_RS01875 PF01809 Putative membrane protein insertion efficiency factor SII_RS01880 PF02386 Cation transport protein SII_RS01885 PF02080 TrkA-C domain SII_RS01885 PF02254 TrkA-N domain SII_RS01890 PF00588 SpoU rRNA Methylase family SII_RS01895 PF12822 ECF transporter, substrate-specific component SII_RS01900 PF01569 PAP2 superfamily SII_RS01910 PF16199 Radical_SAM C-terminal domain SII_RS01910 PF04055 Radical SAM superfamily SII_RS01915 PF06962 Putative rRNA methylase SII_RS01925 PF00999 Sodium/hydrogen exchanger family SII_RS01935 PF00293 NUDIX domain SII_RS01940 PF08279 HTH domain SII_RS01940 PF13280 WYL domain SII_RS01950 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS01950 PF17871 AAA lid domain SII_RS01950 PF07724 AAA domain (Cdc48 subfamily) SII_RS01950 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS01955 PF08796 Protein of unknown function (DUF1797) SII_RS01965 PF07664 Ferrous iron transport protein B C terminus SII_RS01965 PF17910 FeoB cytosolic helical domain SII_RS01965 PF02421 Ferrous iron transport protein B SII_RS01965 PF07670 Nucleoside recognition SII_RS01985 PF00005 ABC transporter SII_RS01990 PF02687 FtsX-like permease family SII_RS01990 PF12704 MacB-like periplasmic core domain SII_RS01995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SII_RS01995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SII_RS02000 PF01256 Carbohydrate kinase SII_RS02005 PF13742 OB-fold nucleic acid binding domain SII_RS02005 PF02601 Exonuclease VII, large subunit SII_RS02010 PF02609 Exonuclease VII small subunit SII_RS02015 PF00348 Polyprenyl synthetase SII_RS02020 PF01728 FtsJ-like methyltransferase SII_RS02020 PF01479 S4 domain SII_RS02025 PF02863 Arginine repressor, C-terminal domain SII_RS02025 PF01316 Arginine repressor, DNA binding domain SII_RS02030 PF13476 AAA domain SII_RS02040 PF01497 Periplasmic binding protein SII_RS02045 PF00005 ABC transporter SII_RS02050 PF01032 FecCD transport family SII_RS02055 PF01032 FecCD transport family SII_RS02060 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS02065 PF00216 Bacterial DNA-binding protein SII_RS02070 PF01475 Ferric uptake regulator family SII_RS02075 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS02080 PF00905 Penicillin binding protein transpeptidase domain SII_RS02080 PF03717 Penicillin-binding Protein dimerisation domain SII_RS02085 PF02132 RecR protein SII_RS02085 PF13662 Toprim domain SII_RS02090 PF07478 D-ala D-ala ligase C-terminus SII_RS02090 PF01820 D-ala D-ala ligase N-terminus SII_RS02095 PF02875 Mur ligase family, glutamate ligase domain SII_RS02095 PF08245 Mur ligase middle domain SII_RS02095 PF01225 Mur ligase family, catalytic domain SII_RS02115 PF01381 Helix-turn-helix SII_RS02125 PF00009 Elongation factor Tu GTP binding domain SII_RS02125 PF03144 Elongation factor Tu domain 2 SII_RS02125 PF16658 Class II release factor RF3, C-terminal domain SII_RS02140 PF00270 DEAD/DEAH box helicase SII_RS02140 PF00271 Helicase conserved C-terminal domain SII_RS02145 PF01791 DeoC/LacD family aldolase SII_RS02155 PF02502 Ribose/Galactose Isomerase SII_RS02160 PF02502 Ribose/Galactose Isomerase SII_RS02175 PF03611 PTS system sugar-specific permease component SII_RS02180 PF00294 pfkB family carbohydrate kinase SII_RS02185 PF07501 G5 domain SII_RS02185 PF04650 YSIRK type signal peptide SII_RS02185 PF00746 LPXTG cell wall anchor motif SII_RS02185 PF00728 Glycosyl hydrolase family 20, catalytic domain SII_RS02190 PF03123 CAT RNA binding domain SII_RS02190 PF00874 PRD domain SII_RS02195 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS02200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS02200 PF02378 Phosphotransferase system, EIIC SII_RS02205 PF00232 Glycosyl hydrolase family 1 SII_RS02210 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SII_RS02215 PF01541 GIY-YIG catalytic domain SII_RS02220 PF05175 Methyltransferase small domain SII_RS02225 PF01197 Ribosomal protein L31 SII_RS02230 PF01368 DHH family SII_RS02230 PF02272 DHHA1 domain SII_RS02235 PF00258 Flavodoxin SII_RS02240 PF01458 Uncharacterized protein family (UPF0051) SII_RS02245 PF01594 AI-2E family transporter SII_RS02255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SII_RS02255 PF00205 Thiamine pyrophosphate enzyme, central domain SII_RS02255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SII_RS02260 PF03306 Alpha-acetolactate decarboxylase SII_RS02265 PF05670 NFACT protein RNA binding domain SII_RS02280 PF09383 NIL domain SII_RS02280 PF00005 ABC transporter SII_RS02290 PF02229 Transcriptional Coactivator p15 (PC4) SII_RS02325 PF00005 ABC transporter SII_RS02325 PF13732 Domain of unknown function (DUF4162) SII_RS02335 PF12705 PD-(D/E)XK nuclease superfamily SII_RS02340 PF12705 PD-(D/E)XK nuclease superfamily SII_RS02340 PF13361 UvrD-like helicase C-terminal domain SII_RS02340 PF00580 UvrD/REP helicase N-terminal domain SII_RS02345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS02345 PF00128 Alpha amylase, catalytic domain SII_RS02345 PF02806 Alpha amylase, C-terminal all-beta domain SII_RS02350 PF00483 Nucleotidyl transferase SII_RS02355 PF00483 Nucleotidyl transferase SII_RS02360 PF08323 Starch synthase catalytic domain SII_RS02360 PF00534 Glycosyl transferases group 1 SII_RS02365 PF00343 Carbohydrate phosphorylase SII_RS02370 PF00137 ATP synthase subunit C SII_RS02375 PF00119 ATP synthase A chain SII_RS02380 PF00430 ATP synthase B/B' CF(0) SII_RS02385 PF00213 ATP synthase delta (OSCP) subunit SII_RS02390 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS02390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS02390 PF00306 ATP synthase alpha/beta chain, C terminal domain SII_RS02395 PF00231 ATP synthase SII_RS02400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS02400 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS02405 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SII_RS02405 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SII_RS02410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS02415 PF11772 DNA-directed RNA polymerase subunit beta SII_RS02420 PF01223 DNA/RNA non-specific endonuclease SII_RS02425 PF00005 ABC transporter SII_RS02425 PF00664 ABC transporter transmembrane region SII_RS02430 PF00664 ABC transporter transmembrane region SII_RS02430 PF00005 ABC transporter SII_RS02445 PF03788 LrgA family SII_RS02450 PF04172 LrgB-like family SII_RS02455 PF00156 Phosphoribosyl transferase domain SII_RS02465 PF04204 Homoserine O-succinyltransferase SII_RS02475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS02475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS02485 PF01433 Peptidase family M1 domain SII_RS02485 PF11838 ERAP1-like C-terminal domain SII_RS02490 PF08220 DeoR-like helix-turn-helix domain SII_RS02490 PF00455 DeoR C terminal sensor domain SII_RS02495 PF00294 pfkB family carbohydrate kinase SII_RS02500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS02500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS02510 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS02515 PF01113 Dihydrodipicolinate reductase, N-terminus SII_RS02515 PF05173 Dihydrodipicolinate reductase, C-terminus SII_RS02520 PF12627 Probable RNA and SrmB- binding site of polymerase A SII_RS02520 PF13735 tRNA nucleotidyltransferase domain 2 putative SII_RS02520 PF01743 Poly A polymerase head domain SII_RS02525 PF12848 ABC transporter SII_RS02525 PF16326 ABC transporter C-terminal domain SII_RS02525 PF00005 ABC transporter SII_RS02530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SII_RS02530 PF01409 tRNA synthetases class II core domain (F) SII_RS02535 PF13673 Acetyltransferase (GNAT) domain SII_RS02540 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SII_RS02540 PF01588 Putative tRNA binding domain SII_RS02540 PF03483 B3/4 domain SII_RS02540 PF03147 Ferredoxin-fold anticodon binding domain SII_RS02540 PF03484 tRNA synthetase B5 domain SII_RS02545 PF02632 BioY family SII_RS02550 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS02550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS02565 PF01926 50S ribosome-binding GTPase SII_RS02565 PF13167 GTP-binding GTPase N-terminal SII_RS02565 PF16360 GTP-binding GTPase Middle Region SII_RS02575 PF00753 Metallo-beta-lactamase superfamily SII_RS02575 PF12706 Beta-lactamase superfamily domain SII_RS02585 PF00106 short chain dehydrogenase SII_RS02600 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SII_RS02600 PF17768 RecJ OB domain SII_RS02600 PF01368 DHH family SII_RS02600 PF02272 DHHA1 domain SII_RS02605 PF00005 ABC transporter SII_RS02615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SII_RS02615 PF14579 Helix-hairpin-helix motif SII_RS02615 PF02811 PHP domain SII_RS02615 PF01336 OB-fold nucleic acid binding domain SII_RS02615 PF07733 Bacterial DNA polymerase III alpha NTPase domain SII_RS02620 PF00365 Phosphofructokinase SII_RS02625 PF02887 Pyruvate kinase, alpha/beta domain SII_RS02625 PF00224 Pyruvate kinase, barrel domain SII_RS02640 PF16916 Dimerisation domain of Zinc Transporter SII_RS02640 PF01545 Cation efflux family SII_RS02645 PF13361 UvrD-like helicase C-terminal domain SII_RS02645 PF00580 UvrD/REP helicase N-terminal domain SII_RS02650 PF00293 NUDIX domain SII_RS02660 PF00664 ABC transporter transmembrane region SII_RS02660 PF00005 ABC transporter SII_RS02660 PF08021 Siderophore-interacting FAD-binding domain SII_RS02660 PF04954 Siderophore-interacting protein SII_RS02665 PF00005 ABC transporter SII_RS02665 PF00664 ABC transporter transmembrane region SII_RS02690 PF16198 tRNA pseudouridylate synthase B C-terminal domain SII_RS02690 PF01509 TruB family pseudouridylate synthase (N terminal domain) SII_RS02695 PF01687 Riboflavin kinase SII_RS02695 PF06574 FAD synthetase SII_RS02700 PF03960 ArsC family SII_RS02705 PF05256 Uncharacterised protein family (UPF0223) SII_RS02710 PF00459 Inositol monophosphatase family SII_RS02715 PF17126 RsmF rRNA methyltransferase first C-terminal domain SII_RS02715 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SII_RS02715 PF01189 16S rRNA methyltransferase RsmB/F SII_RS02720 PF12849 PBP superfamily domain SII_RS02725 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS02730 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS02735 PF00005 ABC transporter SII_RS02740 PF00005 ABC transporter SII_RS02745 PF01895 PhoU domain SII_RS02750 PF04002 RadC-like JAB domain SII_RS02765 PF06971 Putative DNA-binding protein N-terminus SII_RS02765 PF02629 CoA binding domain SII_RS02775 PF00266 Aminotransferase class-V SII_RS02780 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SII_RS02780 PF14572 Phosphoribosyl synthetase-associated domain SII_RS02790 PF04607 Region found in RelA / SpoT proteins SII_RS02795 PF01513 ATP-NAD kinase SII_RS02800 PF00849 RNA pseudouridylate synthase SII_RS02805 PF01515 Phosphate acetyl/butaryl transferase SII_RS02810 PF00730 HhH-GPD superfamily base excision DNA repair protein SII_RS02810 PF14815 NUDIX domain SII_RS02820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS02820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02825 PF12822 ECF transporter, substrate-specific component SII_RS02830 PF02441 Flavoprotein SII_RS02845 PF01268 Formate--tetrahydrofolate ligase SII_RS02865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SII_RS02865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SII_RS02870 PF07690 Major Facilitator Superfamily SII_RS02875 PF09323 Domain of unknown function (DUF1980) SII_RS02880 PF03773 Predicted permease SII_RS02885 PF00575 S1 RNA binding domain SII_RS02885 PF16921 Tex protein YqgF-like domain SII_RS02885 PF09371 Tex-like protein N-terminal domain SII_RS02885 PF17674 HHH domain SII_RS02890 PF10263 SprT-like family SII_RS02900 PF00293 NUDIX domain SII_RS02905 PF02603 HPr Serine kinase N terminus SII_RS02905 PF07475 HPr Serine kinase C-terminal domain SII_RS02910 PF01790 Prolipoprotein diacylglyceryl transferase SII_RS02935 PF16325 Peptidase family U32 C-terminal domain SII_RS02935 PF01136 Peptidase family U32 SII_RS02940 PF00753 Metallo-beta-lactamase superfamily SII_RS02940 PF17770 Ribonuclease J C-terminal domain SII_RS02940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SII_RS02945 PF00756 Putative esterase SII_RS02960 PF12848 ABC transporter SII_RS02960 PF16326 ABC transporter C-terminal domain SII_RS02960 PF00005 ABC transporter SII_RS02970 PF07685 CobB/CobQ-like glutamine amidotransferase domain SII_RS02975 PF08353 Domain of unknown function (DUF1727) SII_RS02975 PF08245 Mur ligase middle domain SII_RS02980 PF02457 DisA bacterial checkpoint controller nucleotide-binding SII_RS02990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS03000 PF02595 Glycerate kinase family SII_RS03020 PF02224 Cytidylate kinase SII_RS03025 PF00707 Translation initiation factor IF-3, C-terminal domain SII_RS03025 PF05198 Translation initiation factor IF-3, N-terminal domain SII_RS03030 PF01632 Ribosomal protein L35 SII_RS03035 PF00453 Ribosomal protein L20 SII_RS03040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS03045 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SII_RS03045 PF01522 Polysaccharide deacetylase SII_RS03050 PF00271 Helicase conserved C-terminal domain SII_RS03050 PF00270 DEAD/DEAH box helicase SII_RS03055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SII_RS03055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SII_RS03060 PF00485 Phosphoribulokinase / Uridine kinase family SII_RS03065 PF01546 Peptidase family M20/M25/M40 SII_RS03065 PF07687 Peptidase dimerisation domain SII_RS03070 PF00762 Ferrochelatase SII_RS03080 PF06421 GTP-binding protein LepA C-terminus SII_RS03080 PF00679 Elongation factor G C-terminus SII_RS03080 PF00009 Elongation factor Tu GTP binding domain SII_RS03080 PF03144 Elongation factor Tu domain 2 SII_RS03085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SII_RS03085 PF01565 FAD binding domain SII_RS03090 PF00005 ABC transporter SII_RS03090 PF08402 TOBE domain SII_RS03095 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS03100 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS03105 PF13416 Bacterial extracellular solute-binding protein SII_RS03110 PF01118 Semialdehyde dehydrogenase, NAD binding domain SII_RS03110 PF02774 Semialdehyde dehydrogenase, dimerisation domain SII_RS03115 PF00701 Dihydrodipicolinate synthetase family SII_RS03130 PF12833 Helix-turn-helix domain SII_RS03130 PF06445 GyrI-like small molecule binding domain SII_RS03135 PF00466 Ribosomal protein L10 SII_RS03140 PF16320 Ribosomal protein L7/L12 dimerisation domain SII_RS03140 PF00542 Ribosomal protein L7/L12 C-terminal domain SII_RS03150 PF18008 Replication initiator protein A C-terminal domain SII_RS03150 PF06970 Replication initiator protein A (RepA) N-terminus SII_RS03155 PF00145 C-5 cytosine-specific DNA methylase SII_RS03235 PF06125 Bacterial protein of unknown function (DUF961) SII_RS03250 PF18106 Rolling Circle replication initiation protein N-terminal domain SII_RS03250 PF02486 Replication initiation factor SII_RS03255 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) SII_RS03260 PF00398 Ribosomal RNA adenine dimethylase SII_RS03295 PF00009 Elongation factor Tu GTP binding domain SII_RS03295 PF03764 Elongation factor G, domain IV SII_RS03295 PF00679 Elongation factor G C-terminus SII_RS03295 PF14492 Elongation Factor G, domain II SII_RS03320 PF09035 Excisionase from transposon Tn916 SII_RS03325 PF02920 DNA binding domain of tn916 integrase SII_RS03325 PF00589 Phage integrase family SII_RS03385 PF01381 Helix-turn-helix SII_RS03390 PF06414 Zeta toxin SII_RS03410 PF03432 Relaxase/Mobilisation nuclease domain SII_RS03415 PF01381 Helix-turn-helix SII_RS03425 PF13495 Phage integrase, N-terminal SAM-like domain SII_RS03425 PF00589 Phage integrase family SII_RS03440 PF12704 MacB-like periplasmic core domain SII_RS03440 PF02687 FtsX-like permease family SII_RS03440 PF00005 ABC transporter SII_RS03460 PF00664 ABC transporter transmembrane region SII_RS03460 PF00005 ABC transporter SII_RS03465 PF05239 PRC-barrel domain SII_RS03465 PF01782 RimM N-terminal domain SII_RS03470 PF01746 tRNA (Guanine-1)-methyltransferase SII_RS03475 PF01297 Zinc-uptake complex component A periplasmic SII_RS03475 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SII_RS03500 PF01381 Helix-turn-helix SII_RS03510 PF13185 GAF domain SII_RS03515 PF12169 DNA polymerase III subunits gamma and tau domain III SII_RS03525 PF08279 HTH domain SII_RS03525 PF02237 Biotin protein ligase C terminal domain SII_RS03525 PF03099 Biotin/lipoate A/B protein ligase family SII_RS03530 PF00356 Bacterial regulatory proteins, lacI family SII_RS03535 PF00288 GHMP kinases N terminal domain SII_RS03535 PF10509 Galactokinase galactose-binding signature SII_RS03535 PF08544 GHMP kinases C terminal SII_RS03540 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SII_RS03540 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SII_RS03545 PF01018 GTP1/OBG SII_RS03545 PF01926 50S ribosome-binding GTPase SII_RS03545 PF09269 Domain of unknown function (DUF1967) SII_RS03555 PF01522 Polysaccharide deacetylase SII_RS03560 PF03447 Homoserine dehydrogenase, NAD binding domain SII_RS03560 PF00742 Homoserine dehydrogenase SII_RS03565 PF08544 GHMP kinases C terminal SII_RS03565 PF00288 GHMP kinases N terminal domain SII_RS03575 PF02378 Phosphotransferase system, EIIC SII_RS03575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS03585 PF07690 Major Facilitator Superfamily SII_RS03590 PF03466 LysR substrate binding domain SII_RS03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SII_RS03595 PF00175 Oxidoreductase NAD-binding domain SII_RS03595 PF00970 Oxidoreductase FAD-binding domain SII_RS03595 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SII_RS03600 PF01180 Dihydroorotate dehydrogenase SII_RS03605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS03615 PF00156 Phosphoribosyl transferase domain SII_RS03620 PF06855 YozE SAM-like fold SII_RS03625 PF02562 PhoH-like protein SII_RS03645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SII_RS03645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SII_RS03660 PF00664 ABC transporter transmembrane region SII_RS03660 PF00005 ABC transporter SII_RS03665 PF00005 ABC transporter SII_RS03665 PF00664 ABC transporter transmembrane region SII_RS03670 PF02130 Uncharacterized protein family UPF0054 SII_RS03675 PF01219 Prokaryotic diacylglycerol kinase SII_RS03680 PF07650 KH domain SII_RS03680 PF01926 50S ribosome-binding GTPase SII_RS03690 PF00293 NUDIX domain SII_RS03700 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SII_RS03700 PF06827 Zinc finger found in FPG and IleRS SII_RS03700 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SII_RS03705 PF01121 Dephospho-CoA kinase SII_RS03710 PF07690 Major Facilitator Superfamily SII_RS03710 PF00083 Sugar (and other) transporter SII_RS03720 PF08206 Ribonuclease B OB domain SII_RS03720 PF00773 RNB domain SII_RS03720 PF17876 Cold shock domain SII_RS03720 PF00575 S1 RNA binding domain SII_RS03725 PF01668 SmpB protein SII_RS03735 PF03772 Competence protein SII_RS03735 PF00753 Metallo-beta-lactamase superfamily SII_RS03735 PF13567 Domain of unknown function (DUF4131) SII_RS03745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SII_RS03745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SII_RS03750 PF03167 Uracil DNA glycosylase superfamily SII_RS03755 PF00293 NUDIX domain SII_RS03760 PF01979 Amidohydrolase family SII_RS03765 PF02772 S-adenosylmethionine synthetase, central domain SII_RS03765 PF00438 S-adenosylmethionine synthetase, N-terminal domain SII_RS03765 PF02773 S-adenosylmethionine synthetase, C-terminal domain SII_RS03770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS03775 PF13302 Acetyltransferase (GNAT) domain SII_RS03780 PF07085 DRTGG domain SII_RS03780 PF00571 CBS domain SII_RS03780 PF00392 Bacterial regulatory proteins, gntR family SII_RS03780 PF03061 Thioesterase superfamily SII_RS03785 PF00557 Metallopeptidase family M24 SII_RS03795 PF01047 MarR family SII_RS03810 PF06177 QueT transporter SII_RS03820 PF02558 Ketopantoate reductase PanE/ApbA SII_RS03820 PF08546 Ketopantoate reductase PanE/ApbA C terminal SII_RS03825 PF00533 BRCA1 C Terminus (BRCT) domain SII_RS03825 PF12826 Helix-hairpin-helix motif SII_RS03825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SII_RS03825 PF01653 NAD-dependent DNA ligase adenylation domain SII_RS03825 PF03120 NAD-dependent DNA ligase OB-fold domain SII_RS03830 PF00781 Diacylglycerol kinase catalytic domain SII_RS03835 PF17999 Pullulanase N1-terminal domain SII_RS03835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS03835 PF00128 Alpha amylase, catalytic domain SII_RS03840 PF00886 Ribosomal protein S16 SII_RS03850 PF02829 3H domain SII_RS03850 PF08279 HTH domain SII_RS03865 PF03932 CutC family SII_RS03870 PF04237 YjbR SII_RS03875 PF00664 ABC transporter transmembrane region SII_RS03875 PF00005 ABC transporter SII_RS03880 PF00664 ABC transporter transmembrane region SII_RS03880 PF00005 ABC transporter SII_RS03885 PF00392 Bacterial regulatory proteins, gntR family SII_RS03885 PF00155 Aminotransferase class I and II SII_RS03900 PF01165 Ribosomal protein S21 SII_RS03905 PF01926 50S ribosome-binding GTPase SII_RS03910 PF01351 Ribonuclease HII SII_RS03915 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS03915 PF12464 Maltose acetyltransferase SII_RS03920 PF18255 DNA processing protein A sterile alpha motif domain SII_RS03920 PF02481 DNA recombination-mediator protein A SII_RS03925 PF01396 Topoisomerase DNA binding C4 zinc finger SII_RS03925 PF01131 DNA topoisomerase SII_RS03925 PF01751 Toprim domain SII_RS03935 PF01134 Glucose inhibited division protein A SII_RS03955 PF00589 Phage integrase family SII_RS04005 PF02881 SRP54-type protein, helical bundle domain SII_RS04005 PF00448 SRP54-type protein, GTPase domain SII_RS04005 PF02978 Signal peptide binding domain SII_RS04010 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SII_RS04015 PF00392 Bacterial regulatory proteins, gntR family SII_RS04015 PF07702 UTRA domain SII_RS04020 PF02540 NAD synthase SII_RS04020 PF00958 GMP synthase C terminal domain SII_RS04020 PF00117 Glutamine amidotransferase class-I SII_RS04040 PF00464 Serine hydroxymethyltransferase SII_RS04045 PF01300 Telomere recombination SII_RS04045 PF03481 Putative GTP-binding controlling metal-binding SII_RS04050 PF05175 Methyltransferase small domain SII_RS04055 PF00472 RF-1 domain SII_RS04055 PF03462 PCRF domain SII_RS04060 PF00265 Thymidine kinase SII_RS04065 PF01361 Tautomerase enzyme SII_RS04070 PF01554 MatE SII_RS04075 PF00860 Permease family SII_RS04080 PF00156 Phosphoribosyl transferase domain SII_RS04085 PF00478 IMP dehydrogenase / GMP reductase domain SII_RS04100 PF00654 Voltage gated chloride channel SII_RS04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04110 PF02424 ApbE family SII_RS04115 PF00890 FAD binding domain SII_RS04115 PF03358 NADPH-dependent FMN reductase SII_RS04115 PF04205 FMN-binding domain SII_RS04120 PF03358 NADPH-dependent FMN reductase SII_RS04120 PF04205 FMN-binding domain SII_RS04120 PF00890 FAD binding domain SII_RS04125 PF00005 ABC transporter SII_RS04140 PF00672 HAMP domain SII_RS04140 PF02743 Cache domain SII_RS04140 PF06580 Histidine kinase SII_RS04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04145 PF12833 Helix-turn-helix domain SII_RS04145 PF00072 Response regulator receiver domain SII_RS04150 PF01625 Peptide methionine sulfoxide reductase SII_RS04150 PF01641 SelR domain SII_RS04155 PF08534 Redoxin SII_RS04160 PF02683 Cytochrome C biogenesis protein transmembrane region SII_RS04165 PF05525 Branched-chain amino acid transport protein SII_RS04170 PF01883 Iron-sulfur cluster assembly protein SII_RS04175 PF04545 Sigma-70, region 4 SII_RS04175 PF00140 Sigma-70 factor, region 1.2 SII_RS04175 PF04539 Sigma-70 region 3 SII_RS04175 PF04542 Sigma-70 region 2 SII_RS04175 PF03979 Sigma-70 factor, region 1.1 SII_RS04180 PF08275 DNA primase catalytic core, N-terminal domain SII_RS04180 PF01807 CHC2 zinc finger SII_RS04180 PF10410 DnaB-helicase binding domain of primase SII_RS04185 PF01741 Large-conductance mechanosensitive channel, MscL SII_RS04190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04190 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04195 PF04203 Sortase domain SII_RS04200 PF03989 DNA gyrase C-terminal domain, beta-propeller SII_RS04200 PF00521 DNA gyrase/topoisomerase IV, subunit A SII_RS04205 PF00056 lactate/malate dehydrogenase, NAD binding domain SII_RS04205 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SII_RS04225 PF00575 S1 RNA binding domain SII_RS04245 PF01063 Amino-transferase class IV SII_RS04250 PF00521 DNA gyrase/topoisomerase IV, subunit A SII_RS04250 PF03989 DNA gyrase C-terminal domain, beta-propeller SII_RS04255 PF04439 Streptomycin adenylyltransferase SII_RS04260 PF00204 DNA gyrase B SII_RS04260 PF01751 Toprim domain SII_RS04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04260 PF00986 DNA gyrase B subunit, carboxyl terminus SII_RS04265 PF02660 Glycerol-3-phosphate acyltransferase SII_RS04275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SII_RS04280 PF16295 Tetracyclin repressor-like, C-terminal domain SII_RS04280 PF00440 Bacterial regulatory proteins, tetR family SII_RS04285 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS04300 PF02146 Sir2 family SII_RS04305 PF00113 Enolase, C-terminal TIM barrel domain SII_RS04305 PF03952 Enolase, N-terminal domain SII_RS04335 PF07690 Major Facilitator Superfamily SII_RS04340 PF00152 tRNA synthetases class II (D, K and N) SII_RS04340 PF01336 OB-fold nucleic acid binding domain SII_RS04350 PF00155 Aminotransferase class I and II SII_RS04360 PF01047 MarR family SII_RS04365 PF03358 NADPH-dependent FMN reductase SII_RS04370 PF03883 Peroxide stress protein YaaA SII_RS04380 PF03006 Haemolysin-III related SII_RS04385 PF02653 Branched-chain amino acid transport system / permease component SII_RS04390 PF02653 Branched-chain amino acid transport system / permease component SII_RS04395 PF00005 ABC transporter SII_RS04400 PF02608 ABC transporter substrate-binding protein PnrA-like SII_RS04405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SII_RS04410 PF01791 DeoC/LacD family aldolase SII_RS04415 PF00591 Glycosyl transferase family, a/b domain SII_RS04415 PF02885 Glycosyl transferase family, helical bundle domain SII_RS04415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SII_RS04420 PF05175 Methyltransferase small domain SII_RS04425 PF00485 Phosphoribulokinase / Uridine kinase family SII_RS04430 PF01649 Ribosomal protein S20 SII_RS04440 PF00128 Alpha amylase, catalytic domain SII_RS04440 PF09154 Domain of unknown function (DUF1939) SII_RS04445 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04450 PF00072 Response regulator receiver domain SII_RS04450 PF00486 Transcriptional regulatory protein, C terminal SII_RS04470 PF01245 Ribosomal protein L19 SII_RS04475 PF00480 ROK family SII_RS04480 PF02142 MGS-like domain SII_RS04480 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SII_RS04480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SII_RS04485 PF00117 Glutamine amidotransferase class-I SII_RS04485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SII_RS04490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SII_RS04490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SII_RS04495 PF00860 Permease family SII_RS04500 PF00156 Phosphoribosyl transferase domain SII_RS04510 PF14527 WhiA LAGLIDADG-like domain SII_RS04510 PF10298 WhiA N-terminal LAGLIDADG-like domain SII_RS04510 PF02650 WhiA C-terminal HTH domain SII_RS04515 PF01933 Uncharacterised protein family UPF0052 SII_RS04520 PF03668 P-loop ATPase protein family SII_RS04525 PF00334 Nucleoside diphosphate kinase SII_RS04540 PF13344 Haloacid dehalogenase-like hydrolase SII_RS04545 PF00293 NUDIX domain SII_RS04555 PF06969 HemN C-terminal domain SII_RS04555 PF04055 Radical SAM superfamily SII_RS04575 PF00271 Helicase conserved C-terminal domain SII_RS04575 PF04851 Type III restriction enzyme, res subunit SII_RS04575 PF12344 Ultra-violet resistance protein B SII_RS04575 PF02151 UvrB/uvrC motif SII_RS04575 PF17757 UvrB interaction domain SII_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS04585 PF00005 ABC transporter SII_RS04590 PF12848 ABC transporter SII_RS04590 PF16326 ABC transporter C-terminal domain SII_RS04590 PF00005 ABC transporter SII_RS04595 PF00005 ABC transporter SII_RS04595 PF00664 ABC transporter transmembrane region SII_RS04600 PF00664 ABC transporter transmembrane region SII_RS04600 PF00005 ABC transporter SII_RS04610 PF01476 LysM domain SII_RS04610 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SII_RS04615 PF01926 50S ribosome-binding GTPase SII_RS04620 PF07724 AAA domain (Cdc48 subfamily) SII_RS04620 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS04620 PF06689 ClpX C4-type zinc finger SII_RS04630 PF00186 Dihydrofolate reductase SII_RS04640 PF00303 Thymidylate synthase SII_RS04645 PF00654 Voltage gated chloride channel SII_RS04665 PF03831 PhnA domain SII_RS04665 PF08274 PhnA Zinc-Ribbon SII_RS04675 PF01472 PUA domain SII_RS04675 PF00696 Amino acid kinase family SII_RS04680 PF01479 S4 domain SII_RS04680 PF00849 RNA pseudouridylate synthase SII_RS04685 PF01252 Signal peptidase (SPase) II SII_RS04690 PF03466 LysR substrate binding domain SII_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SII_RS04705 PF00581 Rhodanese-like domain SII_RS04710 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04715 PF01016 Ribosomal L27 protein SII_RS04725 PF00829 Ribosomal prokaryotic L21 protein SII_RS04735 PF02568 Thiamine biosynthesis protein (ThiI) SII_RS04735 PF02926 THUMP domain SII_RS04740 PF00266 Aminotransferase class-V SII_RS04745 PF06874 Firmicute fructose-1,6-bisphosphatase SII_RS04750 PF03618 Kinase/pyrophosphorylase SII_RS04755 PF08279 HTH domain SII_RS04755 PF00571 CBS domain SII_RS04760 PF02896 PEP-utilising enzyme, TIM barrel domain SII_RS04760 PF00391 PEP-utilising enzyme, mobile domain SII_RS04760 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SII_RS04770 PF02881 SRP54-type protein, helical bundle domain SII_RS04770 PF00448 SRP54-type protein, GTPase domain SII_RS04785 PF06470 SMC proteins Flexible Hinge Domain SII_RS04785 PF02463 RecF/RecN/SMC N terminal domain SII_RS04790 PF14622 Ribonuclease-III-like SII_RS04790 PF00035 Double-stranded RNA binding motif SII_RS04795 PF04304 Protein of unknown function (DUF454) SII_RS04800 PF00753 Metallo-beta-lactamase superfamily SII_RS04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04805 PF00672 HAMP domain SII_RS04805 PF13426 PAS domain SII_RS04805 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04810 PF00072 Response regulator receiver domain SII_RS04810 PF00486 Transcriptional regulatory protein, C terminal SII_RS04820 PF00534 Glycosyl transferases group 1 SII_RS04820 PF13439 Glycosyltransferase Family 4 SII_RS04825 PF13439 Glycosyltransferase Family 4 SII_RS04825 PF00534 Glycosyl transferases group 1 SII_RS04830 PF00356 Bacterial regulatory proteins, lacI family SII_RS04835 PF01321 Creatinase/Prolidase N-terminal domain SII_RS04835 PF00557 Metallopeptidase family M24 SII_RS04840 PF00398 Ribosomal RNA adenine dimethylase SII_RS04845 PF16363 GDP-mannose 4,6 dehydratase SII_RS04850 PF16363 GDP-mannose 4,6 dehydratase SII_RS04855 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SII_RS04860 PF00483 Nucleotidyl transferase SII_RS04865 PF00293 NUDIX domain SII_RS04870 PF01784 NIF3 (NGG1p interacting factor 3) SII_RS04875 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SII_RS04880 PF00884 Sulfatase SII_RS04890 PF14524 Wzt C-terminal domain SII_RS04890 PF00005 ABC transporter SII_RS04900 PF00535 Glycosyl transferase family 2 SII_RS04910 PF00534 Glycosyl transferases group 1 SII_RS04910 PF13439 Glycosyltransferase Family 4 SII_RS04920 PF00535 Glycosyl transferase family 2 SII_RS04920 PF01501 Glycosyl transferase family 8 SII_RS04935 PF00535 Glycosyl transferase family 2 SII_RS04940 PF01501 Glycosyl transferase family 8 SII_RS04950 PF04321 RmlD substrate binding domain SII_RS04960 PF00535 Glycosyl transferase family 2 SII_RS04985 PF00005 ABC transporter SII_RS04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04990 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04995 PF00072 Response regulator receiver domain SII_RS04995 PF00486 Transcriptional regulatory protein, C terminal SII_RS05000 PF00082 Subtilase family SII_RS05005 PF18218 Lantibiotic immunity protein Spa1 C-terminal domain SII_RS05010 PF05147 Lanthionine synthetase C-like protein SII_RS05015 PF00005 ABC transporter SII_RS05020 PF04738 Lantibiotic dehydratase, N terminus SII_RS05020 PF14028 Lantibiotic biosynthesis dehydratase C-term SII_RS05025 PF02052 Gallidermin SII_RS05050 PF02796 Helix-turn-helix domain of resolvase SII_RS05050 PF00239 Resolvase, N terminal domain SII_RS05070 PF00005 ABC transporter SII_RS05075 PF00392 Bacterial regulatory proteins, gntR family SII_RS05085 PF03432 Relaxase/Mobilisation nuclease domain SII_RS05090 PF07693 KAP family P-loop domain SII_RS05120 PF01751 Toprim domain SII_RS05120 PF01131 DNA topoisomerase SII_RS05190 PF05958 tRNA (Uracil-5-)-methyltransferase SII_RS05195 PF03816 Cell envelope-related transcriptional attenuator domain SII_RS05200 PF00800 Prephenate dehydratase SII_RS05205 PF01202 Shikimate kinase SII_RS05210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS05215 PF06133 Control of competence regulator ComK, YlbF/YmcA SII_RS05220 PF02153 Prephenate dehydrogenase SII_RS05230 PF01925 Sulfite exporter TauE/SafE SII_RS05235 PF01264 Chorismate synthase SII_RS05240 PF01761 3-dehydroquinate synthase SII_RS05245 PF08501 Shikimate dehydrogenase substrate binding domain SII_RS05245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SII_RS05250 PF01487 Type I 3-dehydroquinase SII_RS05255 PF10672 S-adenosylmethionine-dependent methyltransferase SII_RS05255 PF17785 PUA-like domain SII_RS05260 PF00884 Sulfatase SII_RS05270 PF01048 Phosphorylase superfamily SII_RS05275 PF01048 Phosphorylase superfamily SII_RS05280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SII_RS05285 PF12631 MnmE helical domain SII_RS05285 PF10396 GTP-binding protein TrmE N-terminus SII_RS05285 PF01926 50S ribosome-binding GTPase SII_RS05290 PF01610 Transposase SII_RS05290 PF13683 Integrase core domain SII_RS05305 PF00121 Triosephosphate isomerase SII_RS05310 PF03143 Elongation factor Tu C-terminal domain SII_RS05310 PF03144 Elongation factor Tu domain 2 SII_RS05310 PF00009 Elongation factor Tu GTP binding domain SII_RS05320 PF04545 Sigma-70, region 4 SII_RS05320 PF04539 Sigma-70 region 3 SII_RS05320 PF04542 Sigma-70 region 2 SII_RS05325 PF00311 Phosphoenolpyruvate carboxylase SII_RS05330 PF01098 Cell cycle protein SII_RS05345 PF00005 ABC transporter SII_RS05350 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05360 PF03167 Uracil DNA glycosylase superfamily SII_RS05370 PF01546 Peptidase family M20/M25/M40 SII_RS05375 PF00881 Nitroreductase family SII_RS05380 PF01541 GIY-YIG catalytic domain SII_RS05380 PF08459 UvrC Helix-hairpin-helix N-terminal SII_RS05380 PF02151 UvrB/uvrC motif SII_RS05385 PF02896 PEP-utilising enzyme, TIM barrel domain SII_RS05385 PF00391 PEP-utilising enzyme, mobile domain SII_RS05385 PF05524 PEP-utilising enzyme, N-terminal SII_RS05390 PF00381 PTS HPr component phosphorylation site SII_RS05395 PF00462 Glutaredoxin SII_RS05400 PF00317 Ribonucleotide reductase, all-alpha domain SII_RS05400 PF08343 Ribonucleotide reductase N-terminal SII_RS05400 PF02867 Ribonucleotide reductase, barrel domain SII_RS05410 PF00268 Ribonucleotide reductase, small chain SII_RS05425 PF03577 Peptidase family C69 SII_RS05435 PF01553 Acyltransferase SII_RS05450 PF04073 Aminoacyl-tRNA editing domain SII_RS05455 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS05460 PF01336 OB-fold nucleic acid binding domain SII_RS05460 PF00152 tRNA synthetases class II (D, K and N) SII_RS05495 PF00072 Response regulator receiver domain SII_RS05495 PF12833 Helix-turn-helix domain SII_RS05500 PF02743 Cache domain SII_RS05500 PF00672 HAMP domain SII_RS05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS05500 PF06580 Histidine kinase SII_RS05510 PF12010 Domain of unknown function (DUF3502) SII_RS05515 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05520 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05530 PF00480 ROK family SII_RS05535 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SII_RS05535 PF01074 Glycosyl hydrolases family 38 N-terminal domain SII_RS05535 PF07748 Glycosyl hydrolases family 38 C-terminal domain SII_RS05535 PF09261 Alpha mannosidase middle domain SII_RS05535 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SII_RS05545 PF17678 Glycosyl hydrolase family 92 N-terminal domain SII_RS05545 PF07971 Glycosyl hydrolase family 92 SII_RS05585 PF00465 Iron-containing alcohol dehydrogenase SII_RS05590 PF00923 Transaldolase/Fructose-6-phosphate aldolase SII_RS05595 PF01228 Glycine radical SII_RS05595 PF02901 Pyruvate formate lyase-like SII_RS05600 PF02378 Phosphotransferase system, EIIC SII_RS05610 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS05615 PF04198 Putative sugar-binding domain SII_RS05615 PF13936 Helix-turn-helix domain SII_RS05620 PF00455 DeoR C terminal sensor domain SII_RS05620 PF08220 DeoR-like helix-turn-helix domain SII_RS05625 PF04055 Radical SAM superfamily SII_RS05640 PF00005 ABC transporter SII_RS05645 PF00440 Bacterial regulatory proteins, tetR family SII_RS05650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS05650 PF03129 Anticodon binding domain SII_RS05650 PF02824 TGS domain SII_RS05650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05665 PF00486 Transcriptional regulatory protein, C terminal SII_RS05665 PF00072 Response regulator receiver domain SII_RS05670 PF10282 Lactonase, 7-bladed beta-propeller SII_RS05675 PF06160 Septation ring formation regulator, EzrA SII_RS05680 PF00204 DNA gyrase B SII_RS05680 PF00986 DNA gyrase B subunit, carboxyl terminus SII_RS05680 PF01751 Toprim domain SII_RS05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS05690 PF01965 DJ-1/PfpI family SII_RS05695 PF01098 Cell cycle protein SII_RS05700 PF03601 Conserved hypothetical protein 698 SII_RS05705 PF00929 Exonuclease SII_RS05705 PF04851 Type III restriction enzyme, res subunit SII_RS05705 PF13307 Helicase C-terminal domain SII_RS05710 PF00753 Metallo-beta-lactamase superfamily SII_RS05715 PF02687 FtsX-like permease family SII_RS05715 PF18075 FtsX extracellular domain SII_RS05720 PF00005 ABC transporter SII_RS05725 PF00472 RF-1 domain SII_RS05725 PF03462 PCRF domain SII_RS05730 PF00689 Cation transporting ATPase, C-terminus SII_RS05730 PF00690 Cation transporter/ATPase, N-terminus SII_RS05740 PF01966 HD domain SII_RS05750 PF02388 FemAB family SII_RS05760 PF00005 ABC transporter SII_RS05760 PF00664 ABC transporter transmembrane region SII_RS05760 PF03412 Peptidase C39 family SII_RS05765 PF01411 tRNA synthetases class II (A) SII_RS05765 PF02272 DHHA1 domain SII_RS05765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05775 PF13145 PPIC-type PPIASE domain SII_RS05780 PF01596 O-methyltransferase SII_RS05785 PF01432 Peptidase family M3 SII_RS05785 PF08439 Oligopeptidase F SII_RS05795 PF02378 Phosphotransferase system, EIIC SII_RS05805 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS05810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS05810 PF00874 PRD domain SII_RS05810 PF05043 Mga helix-turn-helix domain SII_RS05810 PF08279 HTH domain SII_RS05815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS05820 PF04193 PQ loop repeat SII_RS05825 PF00232 Glycosyl hydrolase family 1 SII_RS05830 PF01306 LacY proton/sugar symporter SII_RS05835 PF00768 D-alanyl-D-alanine carboxypeptidase SII_RS05835 PF07943 Penicillin-binding protein 5, C-terminal domain SII_RS05840 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SII_RS05845 PF02547 Queuosine biosynthesis protein SII_RS05850 PF01316 Arginine repressor, DNA binding domain SII_RS05850 PF02863 Arginine repressor, C-terminal domain SII_RS05855 PF01546 Peptidase family M20/M25/M40 SII_RS05860 PF03606 C4-dicarboxylate anaerobic carrier SII_RS05865 PF00696 Amino acid kinase family SII_RS05870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SII_RS05870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SII_RS05915 PF01721 Class II bacteriocin SII_RS05945 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SII_RS05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS05945 PF17203 Single cache domain 3 SII_RS05945 PF00989 PAS fold SII_RS05960 PF00664 ABC transporter transmembrane region SII_RS05960 PF03412 Peptidase C39 family SII_RS05960 PF00005 ABC transporter SII_RS05970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SII_RS05970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SII_RS05980 PF12008 Type I restriction and modification enzyme - subunit R C terminal SII_RS05980 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SII_RS05980 PF18766 SWI2/SNF2 ATPase SII_RS05985 PF01420 Type I restriction modification DNA specificity domain SII_RS05990 PF01420 Type I restriction modification DNA specificity domain SII_RS06000 PF02384 N-6 DNA Methylase SII_RS06000 PF12161 HsdM N-terminal domain SII_RS06005 PF17783 CvfB-like winged helix domain SII_RS06005 PF13509 S1 domain SII_RS06010 PF01765 Ribosome recycling factor SII_RS06015 PF00696 Amino acid kinase family SII_RS06020 PF00687 Ribosomal protein L1p/L10e family SII_RS06025 PF03946 Ribosomal protein L11, N-terminal domain SII_RS06025 PF00298 Ribosomal protein L11, RNA binding domain SII_RS06040 PF09397 Ftsk gamma domain SII_RS06040 PF17854 FtsK alpha domain SII_RS06040 PF01580 FtsK/SpoIIIE family SII_RS06045 PF04024 PspC domain SII_RS06050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SII_RS06060 PF12848 ABC transporter SII_RS06060 PF00005 ABC transporter SII_RS06070 PF01048 Phosphorylase superfamily SII_RS06080 PF00293 NUDIX domain SII_RS06085 PF14602 Hexapeptide repeat of succinyl-transferase SII_RS06085 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS06085 PF12804 MobA-like NTP transferase domain SII_RS06120 PF00313 'Cold-shock' DNA-binding domain SII_RS06140 PF13520 Amino acid permease SII_RS06145 PF02687 FtsX-like permease family SII_RS06150 PF00005 ABC transporter SII_RS06165 PF04397 LytTr DNA-binding domain SII_RS06165 PF00072 Response regulator receiver domain SII_RS06175 PF13732 Domain of unknown function (DUF4162) SII_RS06175 PF00005 ABC transporter SII_RS06185 PF00005 ABC transporter SII_RS06195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS06200 PF00072 Response regulator receiver domain SII_RS06200 PF00486 Transcriptional regulatory protein, C terminal SII_RS06210 PF01588 Putative tRNA binding domain SII_RS06210 PF09334 tRNA synthetases class I (M) SII_RS06235 PF01022 Bacterial regulatory protein, arsR family SII_RS06250 PF03372 Endonuclease/Exonuclease/phosphatase family SII_RS06260 PF10576 Iron-sulfur binding domain of endonuclease III SII_RS06260 PF00633 Helix-hairpin-helix motif SII_RS06260 PF00730 HhH-GPD superfamily base excision DNA repair protein SII_RS06265 PF03960 ArsC family SII_RS06270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SII_RS06270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SII_RS06275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SII_RS06280 PF06156 Initiation control protein YabA SII_RS06285 PF09115 DNA polymerase III, delta subunit, C terminal SII_RS06290 PF02223 Thymidylate kinase SII_RS06295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SII_RS06295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SII_RS06300 PF00571 CBS domain SII_RS06305 PF00005 ABC transporter SII_RS06310 PF12399 Branched-chain amino acid ATP-binding cassette transporter SII_RS06310 PF00005 ABC transporter SII_RS06315 PF11862 Domain of unknown function (DUF3382) SII_RS06315 PF02653 Branched-chain amino acid transport system / permease component SII_RS06320 PF02653 Branched-chain amino acid transport system / permease component SII_RS06325 PF13458 Periplasmic binding protein SII_RS06335 PF00574 Clp protease SII_RS06345 PF00689 Cation transporting ATPase, C-terminus SII_RS06345 PF00690 Cation transporter/ATPase, N-terminus SII_RS06350 PF00155 Aminotransferase class I and II SII_RS06355 PF01053 Cys/Met metabolism PLP-dependent enzyme SII_RS06360 PF14667 Polysaccharide biosynthesis C-terminal domain SII_RS06360 PF01943 Polysaccharide biosynthesis protein SII_RS06365 PF08245 Mur ligase middle domain SII_RS06365 PF02875 Mur ligase family, glutamate ligase domain SII_RS06385 PF02833 DHHA2 domain SII_RS06385 PF01368 DHH family SII_RS06390 PF04055 Radical SAM superfamily SII_RS06400 PF16657 Maltogenic Amylase, C-terminal domain SII_RS06400 PF00128 Alpha amylase, catalytic domain SII_RS06405 PF00367 phosphotransferase system, EIIB SII_RS06405 PF02378 Phosphotransferase system, EIIC SII_RS06410 PF07702 UTRA domain SII_RS06410 PF00392 Bacterial regulatory proteins, gntR family SII_RS06415 PF03471 Transporter associated domain SII_RS06415 PF01595 Cyclin M transmembrane N-terminal domain SII_RS06415 PF00571 CBS domain SII_RS06420 PF01293 Phosphoenolpyruvate carboxykinase SII_RS06425 PF01594 AI-2E family transporter SII_RS06430 PF08264 Anticodon-binding domain of tRNA SII_RS06430 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS06435 PF05103 DivIVA protein SII_RS06450 PF04472 Cell division protein SepF SII_RS06455 PF01168 Alanine racemase, N-terminal domain SII_RS06460 PF00091 Tubulin/FtsZ family, GTPase domain SII_RS06460 PF12327 FtsZ family, C-terminal domain SII_RS06465 PF11983 Membrane-attachment and polymerisation-promoting switch SII_RS06465 PF02491 SHS2 domain inserted in FTSA SII_RS06470 PF03799 Cell division protein FtsQ SII_RS06470 PF08478 POTRA domain, FtsQ-type SII_RS06475 PF04101 Glycosyltransferase family 28 C-terminal domain SII_RS06475 PF03033 Glycosyltransferase family 28 N-terminal domain SII_RS06480 PF02875 Mur ligase family, glutamate ligase domain SII_RS06480 PF08245 Mur ligase middle domain SII_RS06490 PF03144 Elongation factor Tu domain 2 SII_RS06490 PF00009 Elongation factor Tu GTP binding domain SII_RS06490 PF14492 Elongation Factor G, domain II SII_RS06490 PF00679 Elongation factor G C-terminus SII_RS06495 PF01479 S4 domain SII_RS06495 PF00849 RNA pseudouridylate synthase SII_RS06500 PF00581 Rhodanese-like domain SII_RS06510 PF00210 Ferritin-like domain SII_RS06515 PF06750 Bacterial Peptidase A24 N-terminal domain SII_RS06515 PF01478 Type IV leader peptidase family SII_RS06525 PF04055 Radical SAM superfamily SII_RS06530 PF06265 Protein of unknown function (DUF1027) SII_RS06535 PF13180 PDZ domain SII_RS06535 PF05362 Lon protease (S16) C-terminal proteolytic domain SII_RS06540 PF01467 Cytidylyltransferase-like SII_RS06550 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SII_RS06550 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SII_RS06560 PF00271 Helicase conserved C-terminal domain SII_RS06560 PF04851 Type III restriction enzyme, res subunit SII_RS06565 PF09186 Domain of unknown function (DUF1949) SII_RS06565 PF01205 Uncharacterized protein family UPF0029 SII_RS06570 PF00291 Pyridoxal-phosphate dependent enzyme SII_RS06600 PF08264 Anticodon-binding domain of tRNA SII_RS06600 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS06600 PF10458 Valyl tRNA synthetase tRNA binding arm SII_RS06610 PF00958 GMP synthase C terminal domain SII_RS06610 PF03352 Methyladenine glycosylase SII_RS06610 PF00117 Glutamine amidotransferase class-I SII_RS06610 PF13302 Acetyltransferase (GNAT) domain SII_RS06610 PF13673 Acetyltransferase (GNAT) domain SII_RS06645 PF05958 tRNA (Uracil-5-)-methyltransferase SII_RS06645 PF01938 TRAM domain SII_RS06650 PF01636 Phosphotransferase enzyme family SII_RS06655 PF02631 RecX family SII_RS06660 PF04167 Protein of unknown function (DUF402) SII_RS06670 PF00013 KH domain SII_RS06670 PF00575 S1 RNA binding domain SII_RS06670 PF03725 3' exoribonuclease family, domain 2 SII_RS06670 PF01138 3' exoribonuclease family, domain 1 SII_RS06670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SII_RS06675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SII_RS06680 PF00196 Bacterial regulatory proteins, luxR family SII_RS06680 PF00072 Response regulator receiver domain SII_RS06685 PF07730 Histidine kinase SII_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS06695 PF03793 PASTA domain SII_RS06695 PF00069 Protein kinase domain SII_RS06705 PF01029 NusB family SII_RS06705 PF01189 16S rRNA methyltransferase RsmB/F SII_RS06710 PF00551 Formyl transferase SII_RS06710 PF02911 Formyl transferase, C-terminal domain SII_RS06715 PF18074 Primosomal protein N C-terminal domain SII_RS06715 PF17764 3′ DNA-binding domain (3′BD) SII_RS06715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SII_RS06715 PF04851 Type III restriction enzyme, res subunit SII_RS06715 PF00271 Helicase conserved C-terminal domain SII_RS06720 PF01192 RNA polymerase Rpb6 SII_RS06725 PF00625 Guanylate kinase SII_RS06730 PF01966 HD domain SII_RS06730 PF12072 Domain of unknown function (DUF3552) SII_RS06730 PF00013 KH domain SII_RS06735 PF02664 S-Ribosylhomocysteinase (LuxS) SII_RS06740 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS06740 PF13192 Thioredoxin domain SII_RS06745 PF00578 AhpC/TSA family SII_RS06750 PF18708 MapZ extracellular C-terminal domain 2 SII_RS06750 PF18041 MapZ extracellular domain 1 SII_RS06755 PF01170 Putative RNA methylase family UPF0020 SII_RS06755 PF02926 THUMP domain SII_RS06760 PF05103 DivIVA protein SII_RS06765 PF06908 YspA SLOG family SII_RS06770 PF03838 Recombination protein U SII_RS06775 PF00905 Penicillin binding protein transpeptidase domain SII_RS06775 PF00912 Transglycosylase SII_RS06780 PF03051 Peptidase C1-like family SII_RS06785 PF02540 NAD synthase SII_RS06790 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SII_RS06790 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SII_RS06790 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SII_RS06805 PF00324 Amino acid permease SII_RS06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS06820 PF00005 ABC transporter SII_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS06830 PF00271 Helicase conserved C-terminal domain SII_RS06830 PF00270 DEAD/DEAH box helicase SII_RS06835 PF07943 Penicillin-binding protein 5, C-terminal domain SII_RS06835 PF00768 D-alanyl-D-alanine carboxypeptidase SII_RS06840 PF01592 NifU-like N terminal domain SII_RS06845 PF00266 Aminotransferase class-V SII_RS06850 PF01458 Uncharacterized protein family (UPF0051) SII_RS06855 PF00005 ABC transporter SII_RS06860 PF00953 Glycosyl transferase family 4 SII_RS06865 PF05389 Negative regulator of genetic competence (MecA) SII_RS06870 PF02673 Bacitracin resistance protein BacA SII_RS06880 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS06885 PF00005 ABC transporter SII_RS06900 PF00072 Response regulator receiver domain SII_RS06900 PF00196 Bacterial regulatory proteins, luxR family SII_RS06905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS06905 PF07730 Histidine kinase SII_RS06915 PF00005 ABC transporter SII_RS06920 PF02734 DAK2 domain SII_RS06920 PF13684 Dihydroxyacetone kinase family SII_RS06925 PF03780 Asp23 family, cell envelope-related function SII_RS06930 PF00830 Ribosomal L28 family SII_RS06950 PF01116 Fructose-bisphosphate aldolase class-II SII_RS06965 PF06418 CTP synthase N-terminus SII_RS06965 PF00117 Glutamine amidotransferase class-I SII_RS06975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS06980 PF00953 Glycosyl transferase family 4 SII_RS06980 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SII_RS06985 PF03717 Penicillin-binding Protein dimerisation domain SII_RS06985 PF00905 Penicillin binding protein transpeptidase domain SII_RS06985 PF03793 PASTA domain SII_RS06995 PF01795 MraW methylase family SII_RS07010 PF02386 Cation transport protein SII_RS07020 PF05979 Bacterial protein of unknown function (DUF896) SII_RS07025 PF05746 DALR anticodon binding domain SII_RS07025 PF02092 Glycyl-tRNA synthetase beta subunit SII_RS07030 PF02091 Glycyl-tRNA synthetase alpha subunit SII_RS07065 PF01979 Amidohydrolase family SII_RS07070 PF02690 Na+/Pi-cotransporter SII_RS07075 PF02033 Ribosome-binding factor A SII_RS07080 PF04760 Translation initiation factor IF-2, N-terminal region SII_RS07080 PF11987 Translation-initiation factor 2 SII_RS07080 PF00009 Elongation factor Tu GTP binding domain SII_RS07085 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SII_RS07090 PF04296 Protein of unknown function (DUF448) SII_RS07095 PF00575 S1 RNA binding domain SII_RS07095 PF08529 NusA N-terminal domain SII_RS07095 PF13184 NusA-like KH domain SII_RS07100 PF17384 RimP C-terminal SH3 domain SII_RS07100 PF02576 RimP N-terminal domain SII_RS07110 PF02390 Putative methyltransferase SII_RS07115 PF01636 Phosphotransferase enzyme family SII_RS07125 PF00005 ABC transporter SII_RS07130 PF01230 HIT domain SII_RS07140 PF03816 Cell envelope-related transcriptional attenuator domain SII_RS07150 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SII_RS07155 PF00860 Permease family SII_RS07170 PF08240 Alcohol dehydrogenase GroES-like domain SII_RS07170 PF00107 Zinc-binding dehydrogenase SII_RS07175 PF03830 PTS system sorbose subfamily IIB component SII_RS07175 PF03610 PTS system fructose IIA component SII_RS07180 PF03609 PTS system sorbose-specific iic component SII_RS07185 PF03613 PTS system mannose/fructose/sorbose family IID component SII_RS07195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS07195 PF02403 Seryl-tRNA synthetase N-terminal domain SII_RS07200 PF09335 SNARE associated Golgi protein SII_RS07205 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SII_RS07210 PF01039 Carboxyl transferase domain SII_RS07210 PF17848 Acetyl-coA carboxylase zinc finger domain SII_RS07215 PF00289 Biotin carboxylase, N-terminal domain SII_RS07215 PF02785 Biotin carboxylase C-terminal domain SII_RS07215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SII_RS07220 PF07977 FabA-like domain SII_RS07225 PF00364 Biotin-requiring enzyme SII_RS07230 PF00109 Beta-ketoacyl synthase, N-terminal domain SII_RS07230 PF02801 Beta-ketoacyl synthase, C-terminal domain SII_RS07240 PF00698 Acyl transferase domain SII_RS07245 PF03060 Nitronate monooxygenase SII_RS07250 PF00550 Phosphopantetheine attachment site SII_RS07255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SII_RS07255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SII_RS07265 PF00378 Enoyl-CoA hydratase/isomerase SII_RS07270 PF13840 ACT domain SII_RS07270 PF00696 Amino acid kinase family SII_RS07300 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07305 PF00005 ABC transporter SII_RS07305 PF09383 NIL domain SII_RS07310 PF07687 Peptidase dimerisation domain SII_RS07310 PF01546 Peptidase family M20/M25/M40 SII_RS07315 PF03180 NLPA lipoprotein SII_RS07320 PF00497 Bacterial extracellular solute-binding proteins, family 3 SII_RS07330 PF01709 Transcriptional regulator SII_RS07335 PF05636 HIGH Nucleotidyl Transferase SII_RS07340 PF13649 Methyltransferase domain SII_RS07355 PF00857 Isochorismatase family SII_RS07360 PF01966 HD domain SII_RS07365 PF01467 Cytidylyltransferase-like SII_RS07370 PF01985 CRS1 / YhbY (CRM) domain SII_RS07375 PF01926 50S ribosome-binding GTPase SII_RS07390 PF00892 EamA-like transporter family SII_RS07395 PF08240 Alcohol dehydrogenase GroES-like domain SII_RS07395 PF00107 Zinc-binding dehydrogenase SII_RS07400 PF02637 GatB domain SII_RS07400 PF02934 GatB/GatE catalytic domain SII_RS07405 PF01425 Amidase SII_RS07410 PF02686 Glu-tRNAGln amidotransferase C subunit SII_RS07415 PF02938 GAD domain SII_RS07415 PF00152 tRNA synthetases class II (D, K and N) SII_RS07415 PF01336 OB-fold nucleic acid binding domain SII_RS07420 PF00857 Isochorismatase family SII_RS07425 PF06018 CodY GAF-like domain SII_RS07425 PF08222 CodY helix-turn-helix domain SII_RS07430 PF00155 Aminotransferase class I and II SII_RS07435 PF00582 Universal stress protein family SII_RS07445 PF17763 Glutaminase/Asparaginase C-terminal domain SII_RS07445 PF00710 Asparaginase, N-terminal SII_RS07450 PF00271 Helicase conserved C-terminal domain SII_RS07450 PF00270 DEAD/DEAH box helicase SII_RS07450 PF17191 RecG wedge domain SII_RS07455 PF01168 Alanine racemase, N-terminal domain SII_RS07455 PF00842 Alanine racemase, C-terminal domain SII_RS07460 PF01648 4'-phosphopantetheinyl transferase superfamily SII_RS07465 PF00793 DAHP synthetase I family SII_RS07470 PF07517 SecA DEAD-like domain SII_RS07470 PF01043 SecA preprotein cross-linking domain SII_RS07470 PF02810 SEC-C motif SII_RS07470 PF07516 SecA Wing and Scaffold domain SII_RS07475 PF13520 Amino acid permease SII_RS07505 PF01238 Phosphomannose isomerase type I SII_RS07510 PF00392 Bacterial regulatory proteins, gntR family SII_RS07510 PF07702 UTRA domain SII_RS07515 PF02378 Phosphotransferase system, EIIC SII_RS07520 PF00232 Glycosyl hydrolase family 1 SII_RS07530 PF00664 ABC transporter transmembrane region SII_RS07530 PF00005 ABC transporter SII_RS07535 PF00664 ABC transporter transmembrane region SII_RS07535 PF00005 ABC transporter SII_RS07545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SII_RS07550 PF01327 Polypeptide deformylase SII_RS07555 PF00480 ROK family SII_RS07560 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS07560 PF02378 Phosphotransferase system, EIIC SII_RS07560 PF00367 phosphotransferase system, EIIB SII_RS07565 PF00251 Glycosyl hydrolases family 32 N-terminal domain SII_RS07565 PF08244 Glycosyl hydrolases family 32 C terminal SII_RS07570 PF00356 Bacterial regulatory proteins, lacI family SII_RS07580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SII_RS07580 PF00005 ABC transporter SII_RS07585 PF00005 ABC transporter SII_RS07585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SII_RS07590 PF12911 N-terminal TM domain of oligopeptide transport permease C SII_RS07590 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07595 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS07605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS07615 PF06418 CTP synthase N-terminus SII_RS07615 PF00117 Glutamine amidotransferase class-I SII_RS07620 PF05066 HB1, ASXL, restriction endonuclease HTH domain SII_RS07625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SII_RS07625 PF05697 Bacterial trigger factor protein (TF) SII_RS07625 PF05698 Bacterial trigger factor protein (TF) C-terminus SII_RS07630 PF04260 Protein of unknown function (DUF436) SII_RS07635 PF07155 ECF-type riboflavin transporter, S component SII_RS07640 PF08543 Phosphomethylpyrimidine kinase SII_RS07645 PF01416 tRNA pseudouridine synthase SII_RS07650 PF13344 Haloacid dehalogenase-like hydrolase SII_RS07650 PF00293 NUDIX domain SII_RS07655 PF00226 DnaJ domain SII_RS07655 PF01556 DnaJ C terminal domain SII_RS07655 PF00684 DnaJ central domain SII_RS07660 PF00012 Hsp70 protein SII_RS07665 PF01025 GrpE SII_RS07670 PF01628 HrcA protein C terminal domain SII_RS07670 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SII_RS07675 PF00923 Transaldolase/Fructose-6-phosphate aldolase SII_RS07680 PF03611 PTS system sugar-specific permease component SII_RS07685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS07690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS07705 PF05167 Uncharacterised ACR (DUF711) SII_RS07715 PF00356 Bacterial regulatory proteins, lacI family SII_RS07730 PF03613 PTS system mannose/fructose/sorbose family IID component SII_RS07735 PF03609 PTS system sorbose-specific iic component SII_RS07740 PF03830 PTS system sorbose subfamily IIB component SII_RS07745 PF07470 Glycosyl Hydrolase Family 88 SII_RS07775 PF17802 Prealbumin-like fold domain SII_RS07775 PF05737 Collagen binding domain SII_RS07775 PF05738 Cna protein B-type domain SII_RS07780 PF02278 Polysaccharide lyase family 8, super-sandwich domain SII_RS07780 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SII_RS07780 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SII_RS07785 PF00255 Glutathione peroxidase SII_RS07815 PF00005 ABC transporter SII_RS07820 PF03412 Peptidase C39 family SII_RS07820 PF00005 ABC transporter SII_RS07820 PF00664 ABC transporter transmembrane region SII_RS07845 PF01610 Transposase SII_RS07845 PF13683 Integrase core domain SII_RS07850 PF00403 Heavy-metal-associated domain SII_RS07860 PF00872 Transposase, Mutator family SII_RS07875 PF02661 Fic/DOC family SII_RS07880 PF00005 ABC transporter SII_RS07880 PF00664 ABC transporter transmembrane region SII_RS07910 PF02486 Replication initiation factor SII_RS07910 PF18106 Rolling Circle replication initiation protein N-terminal domain SII_RS07925 PF00380 Ribosomal protein S9/S16 SII_RS07930 PF00572 Ribosomal protein L13 SII_RS07935 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS07940 PF08032 RNA 2'-O ribose methyltransferase substrate binding SII_RS07940 PF00588 SpoU rRNA Methylase family SII_RS07945 PF03459 TOBE domain SII_RS07945 PF00005 ABC transporter SII_RS07945 PF17912 MalK OB fold domain SII_RS07950 PF13556 PucR C-terminal helix-turn-helix domain SII_RS07955 PF00636 Ribonuclease III domain SII_RS07960 PF09190 DALR domain SII_RS07960 PF01406 tRNA synthetases class I (C) catalytic domain SII_RS07970 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS07975 PF00013 KH domain SII_RS07975 PF01138 3' exoribonuclease family, domain 1 SII_RS07975 PF00575 S1 RNA binding domain SII_RS07975 PF03725 3' exoribonuclease family, domain 2 SII_RS07975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SII_RS07980 PF08439 Oligopeptidase F SII_RS07980 PF01432 Peptidase family M3 SII_RS07990 PF00312 Ribosomal protein S15 SII_RS07995 PF01479 S4 domain SII_RS07995 PF00849 RNA pseudouridylate synthase SII_RS08030 PF00534 Glycosyl transferases group 1 SII_RS08030 PF13439 Glycosyltransferase Family 4 SII_RS08050 PF01327 Polypeptide deformylase SII_RS08060 PF02073 Thermophilic metalloprotease (M29) SII_RS08070 PF02811 PHP domain SII_RS08070 PF00929 Exonuclease SII_RS08070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SII_RS08070 PF07733 Bacterial DNA polymerase III alpha NTPase domain SII_RS08070 PF14480 DNA polymerase III polC-type N-terminus I SII_RS08070 PF11490 DNA polymerase III polC-type N-terminus II SII_RS08075 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SII_RS08080 PF00128 Alpha amylase, catalytic domain SII_RS08080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS08080 PF03714 Bacterial pullanase-associated domain SII_RS08085 PF08264 Anticodon-binding domain of tRNA SII_RS08085 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS08085 PF13603 Leucyl-tRNA synthetase, Domain 2 SII_RS08085 PF09334 tRNA synthetases class I (M) SII_RS08090 PF05649 Peptidase family M13 SII_RS08090 PF01431 Peptidase family M13 SII_RS08095 PF00005 ABC transporter SII_RS08100 PF00950 ABC 3 transport family SII_RS08105 PF01297 Zinc-uptake complex component A periplasmic SII_RS08115 PF02580 D-Tyr-tRNA(Tyr) deacylase SII_RS08120 PF02824 TGS domain SII_RS08120 PF04607 Region found in RelA / SpoT proteins SII_RS08120 PF13291 ACT domain SII_RS08125 PF04452 RNA methyltransferase SII_RS08135 PF13673 Acetyltransferase (GNAT) domain SII_RS08150 PF16193 AAA C-terminal domain SII_RS08150 PF05496 Holliday junction DNA helicase RuvB P-loop domain SII_RS08150 PF12002 MgsA AAA+ ATPase C terminal SII_RS08165 PF02677 Epoxyqueuosine reductase QueH SII_RS08170 PF00118 TCP-1/cpn60 chaperonin family SII_RS08175 PF00166 Chaperonin 10 Kd subunit SII_RS08185 PF03613 PTS system mannose/fructose/sorbose family IID component SII_RS08190 PF03609 PTS system sorbose-specific iic component SII_RS08210 PF00196 Bacterial regulatory proteins, luxR family SII_RS08210 PF00072 Response regulator receiver domain SII_RS08215 PF07730 Histidine kinase SII_RS08225 PF00436 Single-strand binding protein family SII_RS08230 PF01588 Putative tRNA binding domain SII_RS08230 PF14794 Domain of unknown function (DUF4479) SII_RS08235 PF00085 Thioredoxin SII_RS08245 PF05343 M42 glutamyl aminopeptidase SII_RS08255 PF07155 ECF-type riboflavin transporter, S component SII_RS08260 PF02875 Mur ligase family, glutamate ligase domain SII_RS08260 PF08245 Mur ligase middle domain SII_RS08270 PF03129 Anticodon binding domain SII_RS08270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS08270 PF04073 Aminoacyl-tRNA editing domain SII_RS08275 PF02163 Peptidase family M50 SII_RS08285 PF01255 Putative undecaprenyl diphosphate synthase SII_RS08295 PF02779 Transketolase, pyrimidine binding domain SII_RS08295 PF02780 Transketolase, C-terminal domain SII_RS08295 PF00456 Transketolase, thiamine diphosphate binding domain SII_RS08310 PF00596 Class II Aldolase and Adducin N-terminal domain SII_RS08315 PF01261 Xylose isomerase-like TIM barrel SII_RS08320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS08325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS08330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS08335 PF03611 PTS system sugar-specific permease component SII_RS08340 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS08340 PF17871 AAA lid domain SII_RS08340 PF07724 AAA domain (Cdc48 subfamily) SII_RS08340 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS08390 PF01380 SIS domain SII_RS08395 PF00871 Acetokinase family SII_RS08420 PF07963 Prokaryotic N-terminal methylation motif SII_RS08425 PF00482 Type II secretion system (T2SS), protein F SII_RS08430 PF00437 Type II/IV secretion system protein SII_RS08440 PF00120 Glutamine synthetase, catalytic domain SII_RS08440 PF03951 Glutamine synthetase, beta-Grasp domain SII_RS08445 PF13411 MerR HTH family regulatory protein SII_RS08455 PF05257 CHAP domain SII_RS08455 PF01476 LysM domain SII_RS08460 PF17998 Cell surface antigen I/II C2 terminal domain SII_RS08460 PF00746 LPXTG cell wall anchor motif SII_RS08460 PF08363 Glucan-binding protein C SII_RS08460 PF16364 Cell surface antigen C-terminus SII_RS08460 PF06696 Streptococcal surface antigen repeat SII_RS08460 PF18652 Adhesin P1 N-terminal domain SII_RS08465 PF00162 Phosphoglycerate kinase SII_RS08470 PF04983 RNA polymerase Rpb1, domain 3 SII_RS08470 PF04998 RNA polymerase Rpb1, domain 5 SII_RS08470 PF05000 RNA polymerase Rpb1, domain 4 SII_RS08470 PF00623 RNA polymerase Rpb1, domain 2 SII_RS08470 PF04997 RNA polymerase Rpb1, domain 1 SII_RS08475 PF00562 RNA polymerase Rpb2, domain 6 SII_RS08475 PF04561 RNA polymerase Rpb2, domain 2 SII_RS08475 PF10385 RNA polymerase beta subunit external 1 domain SII_RS08475 PF04563 RNA polymerase beta subunit SII_RS08475 PF04560 RNA polymerase Rpb2, domain 7 SII_RS08475 PF04565 RNA polymerase Rpb2, domain 3 SII_RS08480 PF00912 Transglycosylase SII_RS08480 PF00905 Penicillin binding protein transpeptidase domain SII_RS08485 PF00579 tRNA synthetases class I (W and Y) SII_RS08485 PF01479 S4 domain SII_RS08490 PF08241 Methyltransferase domain SII_RS08500 PF01812 5-formyltetrahydrofolate cyclo-ligase family SII_RS08505 PF07687 Peptidase dimerisation domain SII_RS08505 PF01546 Peptidase family M20/M25/M40 SII_RS08510 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SII_RS08510 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS08510 PF14602 Hexapeptide repeat of succinyl-transferase SII_RS08515 PF00749 tRNA synthetases class I (E and Q), catalytic domain SII_RS08520 PF18073 Rubredoxin metal binding domain SII_RS08530 PF00692 dUTPase SII_RS08545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SII_RS08545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SII_RS08550 PF00483 Nucleotidyl transferase SII_RS08660 PF01196 Ribosomal protein L17 SII_RS08665 PF01000 RNA polymerase Rpb3/RpoA insert domain SII_RS08665 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SII_RS08665 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SII_RS08670 PF00411 Ribosomal protein S11 SII_RS08675 PF00416 Ribosomal protein S13/S18 SII_RS08680 PF01176 Translation initiation factor 1A / IF-1 SII_RS08690 PF00344 SecY translocase SII_RS08695 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SII_RS08700 PF00327 Ribosomal protein L30p/L7e SII_RS08705 PF00333 Ribosomal protein S5, N-terminal domain SII_RS08705 PF03719 Ribosomal protein S5, C-terminal domain SII_RS08710 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SII_RS08715 PF00347 Ribosomal protein L6 SII_RS08720 PF00410 Ribosomal protein S8 SII_RS08725 PF00253 Ribosomal protein S14p/S29e SII_RS08730 PF00281 Ribosomal protein L5 SII_RS08730 PF00673 ribosomal L5P family C-terminus SII_RS08735 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SII_RS08735 PF00467 KOW motif SII_RS08740 PF00238 Ribosomal protein L14p/L23e SII_RS08745 PF00366 Ribosomal protein S17 SII_RS08750 PF00831 Ribosomal L29 protein SII_RS08755 PF00252 Ribosomal protein L16p/L10e SII_RS08760 PF00189 Ribosomal protein S3, C-terminal domain SII_RS08760 PF07650 KH domain SII_RS08765 PF00237 Ribosomal protein L22p/L17e SII_RS08770 PF00203 Ribosomal protein S19 SII_RS08775 PF00181 Ribosomal Proteins L2, RNA binding domain SII_RS08775 PF03947 Ribosomal Proteins L2, C-terminal domain SII_RS08780 PF00276 Ribosomal protein L23 SII_RS08785 PF00573 Ribosomal protein L4/L1 family SII_RS08790 PF00297 Ribosomal protein L3 SII_RS08795 PF00338 Ribosomal protein S10p/S20e SII_RS08805 PF01702 Queuine tRNA-ribosyltransferase SII_RS08820 PF13380 CoA binding domain SII_RS08825 PF01367 5'-3' exonuclease, C-terminal SAM fold SII_RS08825 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SII_RS08825 PF00476 DNA polymerase family A SII_RS08840 PF02378 Phosphotransferase system, EIIC SII_RS08840 PF00367 phosphotransferase system, EIIB SII_RS08840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS08845 PF01380 SIS domain SII_RS08845 PF01418 Helix-turn-helix domain, rpiR family SII_RS08850 PF00512 His Kinase A (phospho-acceptor) domain SII_RS08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS08855 PF00072 Response regulator receiver domain SII_RS08855 PF00486 Transcriptional regulatory protein, C terminal SII_RS08880 PF00535 Glycosyl transferase family 2 SII_RS08885 PF13439 Glycosyltransferase Family 4 SII_RS08885 PF00534 Glycosyl transferases group 1 SII_RS08890 PF00551 Formyl transferase SII_RS08890 PF01370 NAD dependent epimerase/dehydratase family SII_RS08890 PF02911 Formyl transferase, C-terminal domain SII_RS08895 PF02397 Bacterial sugar transferase SII_RS08905 PF13614 AAA domain SII_RS08910 PF02706 Chain length determinant protein SII_RS08940 PF03477 ATP cone domain SII_RS08940 PF13597 Anaerobic ribonucleoside-triphosphate reductase SII_RS08950 PF13091 PLD-like domain SII_RS08960 PF08245 Mur ligase middle domain SII_RS08960 PF02875 Mur ligase family, glutamate ligase domain SII_RS08965 PF06949 Protein of unknown function (DUF1292) SII_RS08970 PF03652 Holliday junction resolvase SII_RS08975 PF06135 IreB regulatory phosphoprotein SII_RS08990 PF03960 ArsC family SII_RS08995 PF00154 recA bacterial DNA recombination protein SII_RS09000 PF18146 Damage-inducible protein CinA KH domain SII_RS09000 PF02464 Competence-damaged protein SII_RS09000 PF00994 Probable molybdopterin binding domain SII_RS09010 PF03352 Methyladenine glycosylase SII_RS09015 PF01330 RuvA N terminal domain SII_RS09015 PF07499 RuvA, C-terminal domain SII_RS09020 PF01381 Helix-turn-helix SII_RS09030 PF01119 DNA mismatch repair protein, C-terminal domain SII_RS09030 PF08676 MutL C terminal dimerisation domain SII_RS09035 PF04397 LytTr DNA-binding domain SII_RS09045 PF01624 MutS domain I SII_RS09045 PF05188 MutS domain II SII_RS09045 PF05190 MutS family domain IV SII_RS09045 PF05192 MutS domain III SII_RS09045 PF00488 MutS domain V SII_RS09050 PF01316 Arginine repressor, DNA binding domain SII_RS09050 PF02863 Arginine repressor, C-terminal domain SII_RS09055 PF05746 DALR anticodon binding domain SII_RS09055 PF03485 Arginyl tRNA synthetase N terminal domain SII_RS09055 PF00750 tRNA synthetases class I (R) SII_RS09060 PF07972 NrdI Flavodoxin like SII_RS09070 PF00343 Carbohydrate phosphorylase SII_RS09075 PF02446 4-alpha-glucanotransferase SII_RS09085 PF13416 Bacterial extracellular solute-binding protein SII_RS09090 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS09095 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS09105 PF00356 Bacterial regulatory proteins, lacI family SII_RS09105 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SII_RS09110 PF00128 Alpha amylase, catalytic domain SII_RS09110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS09110 PF17999 Pullulanase N1-terminal domain SII_RS09115 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SII_RS09115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SII_RS09120 PF00152 tRNA synthetases class II (D, K and N) SII_RS09120 PF02938 GAD domain SII_RS09120 PF01336 OB-fold nucleic acid binding domain SII_RS09130 PF13393 Histidyl-tRNA synthetase SII_RS09130 PF03129 Anticodon binding domain SII_RS09135 PF01783 Ribosomal L32p protein family SII_RS09140 PF00471 Ribosomal protein L33 SII_RS09150 PF03793 PASTA domain SII_RS09150 PF00069 Protein kinase domain SII_RS09220 PF01381 Helix-turn-helix SII_RS09230 PF01545 Cation efflux family SII_RS09240 PF07690 Major Facilitator Superfamily SII_RS09250 PF02245 Methylpurine-DNA glycosylase (MPG) SII_RS09270 PF04914 DltD protein SII_RS09275 PF00550 Phosphopantetheine attachment site SII_RS09280 PF03062 MBOAT, membrane-bound O-acyltransferase family SII_RS09285 PF13193 AMP-binding enzyme C-terminal domain SII_RS09285 PF00501 AMP-binding enzyme SII_RS09355 PF01061 ABC-2 type transporter SII_RS09365 PF01479 S4 domain SII_RS09365 PF00163 Ribosomal protein S4/S9 N-terminal domain SII_RS09370 PF13419 Haloacid dehalogenase-like hydrolase SII_RS09380 PF00772 DnaB-like helicase N terminal domain SII_RS09380 PF03796 DnaB-like helicase C terminal domain SII_RS09385 PF03948 Ribosomal protein L9, C-terminal domain SII_RS09385 PF01281 Ribosomal protein L9, N-terminal domain SII_RS09390 PF02272 DHHA1 domain SII_RS09390 PF01368 DHH family SII_RS09395 PF01134 Glucose inhibited division protein A SII_RS09395 PF13932 GidA associated domain SII_RS09405 PF01476 LysM domain SII_RS09405 PF05257 CHAP domain SII_RS09410 PF01842 ACT domain SII_RS09410 PF03315 Serine dehydratase beta chain SII_RS09415 PF03313 Serine dehydratase alpha chain SII_RS09420 PF13419 Haloacid dehalogenase-like hydrolase SII_RS09425 PF06737 Transglycosylase-like domain SII_RS09430 PF02361 Cobalt transport protein SII_RS09435 PF00005 ABC transporter SII_RS09440 PF00005 ABC transporter SII_RS09445 PF01066 CDP-alcohol phosphatidyltransferase SII_RS09455 PF05193 Peptidase M16 inactive domain SII_RS09455 PF00675 Insulinase (Peptidase family M16) SII_RS09460 PF05193 Peptidase M16 inactive domain SII_RS09470 PF02463 RecF/RecN/SMC N terminal domain SII_RS09475 PF00478 IMP dehydrogenase / GMP reductase domain SII_RS09475 PF00571 CBS domain SII_RS09480 PF00579 tRNA synthetases class I (W and Y) SII_RS09485 PF16363 GDP-mannose 4,6 dehydratase SII_RS09490 PF00121 Triosephosphate isomerase SII_RS09500 PF12848 ABC transporter SII_RS09500 PF00005 ABC transporter SII_RS09525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS09525 PF00512 His Kinase A (phospho-acceptor) domain SII_RS09525 PF00989 PAS fold SII_RS09540 PF02590 Predicted SPOUT methyltransferase SII_RS09545 PF13180 PDZ domain SII_RS09550 PF02195 ParB-like nuclease domain SII_RS09550 PF17762 HTH domain found in ParB protein