SII_RS00005 PF00308 Bacterial dnaA protein SII_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SII_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SII_RS00010 PF02767 DNA polymerase III beta subunit, central domain SII_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SII_RS00015 PF06107 SII_RS00015 SII_RS00020 PF06998 Protein of unknown function (DUF1307) SII_RS00025 PF01926 50S ribosome-binding GTPase SII_RS00025 PF06071 Protein of unknown function (DUF933) SII_RS00030 PF01195 Peptidyl-tRNA hydrolase SII_RS00035 PF00270 DEAD/DEAH box helicase SII_RS00035 PF00271 Helicase conserved C-terminal domain SII_RS00035 PF02559 CarD-like/TRCF domain SII_RS00035 PF03461 TRCF domain SII_RS00040 PF01479 S4 domain SII_RS00045 PF04977 Septum formation initiator SII_RS00050 PF13354 Beta-lactamase enzyme family SII_RS00055 PF01171 PP-loop family SII_RS00055 PF11734 TilS substrate C-terminal domain SII_RS00060 PF00156 Phosphoribosyl transferase domain SII_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS00065 PF01434 Peptidase family M41 SII_RS00065 PF06480 FtsH Extracellular SII_RS00070 PF02973 Sialidase, N-terminal domain SII_RS00070 PF13088 BNR repeat-like domain SII_RS00185 PF04085 rod shape-determining protein MreC SII_RS00190 PF04093 SII_RS00190 SII_RS00195 PF05257 CHAP domain SII_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SII_RS00200 PF14572 Phosphoribosyl synthetase-associated domain SII_RS00205 PF00155 Aminotransferase class I and II SII_RS00210 PF02565 Recombination protein O C terminal SII_RS00210 PF11967 Recombination protein O N terminal SII_RS00215 PF02504 Fatty acid synthesis protein SII_RS00220 PF00550 Phosphopantetheine attachment site SII_RS00225 PF01259 SAICAR synthetase SII_RS00230 PF02769 AIR synthase related protein, C-terminal domain SII_RS00230 PF13507 CobB/CobQ-like glutamine amidotransferase domain SII_RS00240 PF00156 Phosphoribosyl transferase domain SII_RS00240 PF13522 Glutamine amidotransferase domain SII_RS00245 PF00586 AIR synthase related protein, N-terminal domain SII_RS00245 PF02769 AIR synthase related protein, C-terminal domain SII_RS00250 PF00551 Formyl transferase SII_RS00260 PF01808 AICARFT/IMPCHase bienzyme SII_RS00260 PF02142 MGS-like domain SII_RS00265 PF05257 CHAP domain SII_RS00265 PF08481 SII_RS00265 SII_RS00270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SII_RS00270 PF02843 Phosphoribosylglycinamide synthetase, C domain SII_RS00270 PF02844 Phosphoribosylglycinamide synthetase, N domain SII_RS00275 PF00731 AIR carboxylase SII_RS00280 PF02222 ATP-grasp domain SII_RS00300 PF00206 Lyase SII_RS00300 PF10397 Adenylosuccinate lyase C-terminus SII_RS00305 PF02733 Dak1 domain SII_RS00310 PF00440 Bacterial regulatory proteins, tetR family SII_RS00315 PF02733 Dak1 domain SII_RS00320 PF02734 DAK2 domain SII_RS00325 PF03610 PTS system fructose IIA component SII_RS00330 PF00230 Major intrinsic protein SII_RS00335 PF00392 Bacterial regulatory proteins, gntR family SII_RS00335 PF07702 UTRA domain SII_RS00340 PF01301 Glycosyl hydrolases family 35 SII_RS00345 PF03830 PTS system sorbose subfamily IIB component SII_RS00350 PF03609 SII_RS00350 SII_RS00355 PF03613 SII_RS00355 SII_RS00360 PF03610 PTS system fructose IIA component SII_RS00365 PF01380 SIS domain SII_RS00370 PF01791 DeoC/LacD family aldolase SII_RS00375 PF01263 Aldose 1-epimerase SII_RS00380 PF01473 Putative cell wall binding repeat SII_RS00385 PF05491 Holliday junction DNA helicase ruvB C-terminus SII_RS00385 PF05496 Holliday junction DNA helicase ruvB N-terminus SII_RS00390 PF06042 Bacterial protein of unknown function (DUF925) SII_RS00400 PF00717 Peptidase S24-like SII_RS00405 PF05738 Cna protein B-type domain SII_RS00405 PF13519 von Willebrand factor type A domain SII_RS00410 PF16569 SII_RS00410 SII_RS00415 PF04203 Sortase family SII_RS00420 PF04203 Sortase family SII_RS00425 PF01451 Low molecular weight phosphotyrosine protein phosphatase SII_RS00430 PF02493 MORN repeat SII_RS00435 PF01757 SII_RS00435 SII_RS00440 PF00171 Aldehyde dehydrogenase family SII_RS00440 PF00465 Iron-containing alcohol dehydrogenase SII_RS00445 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SII_RS00450 PF01547 Bacterial extracellular solute-binding protein SII_RS00455 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS00460 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS00465 PF04074 Domain of unknown function (DUF386) SII_RS00470 PF04854 SII_RS00470 SII_RS00475 PF00701 Dihydrodipicolinate synthetase family SII_RS00480 PF00480 ROK family SII_RS00485 PF01380 SIS domain SII_RS00485 PF01418 Helix-turn-helix domain, rpiR family SII_RS00490 PF05913 Bacterial protein of unknown function (DUF871) SII_RS00495 PF00367 phosphotransferase system, EIIB SII_RS00495 PF02378 Phosphotransferase system, EIIC SII_RS00500 PF01380 SIS domain SII_RS00505 PF01380 SIS domain SII_RS00505 PF01418 Helix-turn-helix domain, rpiR family SII_RS00515 PF01496 V-type ATPase 116kDa subunit family SII_RS00520 PF00137 ATP synthase subunit C SII_RS00530 PF01992 ATP synthase (C/AC39) subunit SII_RS00535 PF01990 ATP synthase (F/14-kDa) subunit SII_RS00540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS00540 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS00540 PF16886 SII_RS00540 SII_RS00545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS00545 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS00550 PF01813 ATP synthase subunit D SII_RS00555 PF00291 Pyridoxal-phosphate dependent enzyme SII_RS00555 PF14821 Threonine synthase N terminus SII_RS00560 PF01554 MatE SII_RS00565 PF13419 Haloacid dehalogenase-like hydrolase SII_RS00580 PF00746 SII_RS00580 SII_RS00580 PF05738 Cna protein B-type domain SII_RS00580 PF12892 T surface-antigen of pili SII_RS00590 PF01289 Thiol-activated cytolysin SII_RS00595 PF01047 MarR family SII_RS00600 PF00005 ABC transporter SII_RS00605 PF00950 SII_RS00605 SII_RS00610 PF01297 Periplasmic solute binding protein family SII_RS00610 PF09223 YodA lipocalin-like domain SII_RS00615 PF03965 Penicillinase repressor SII_RS00620 PF00122 E1-E2 ATPase SII_RS00620 PF00403 Heavy-metal-associated domain SII_RS00620 PF00702 haloacid dehalogenase-like hydrolase SII_RS00625 PF00403 Heavy-metal-associated domain SII_RS00630 PF00849 RNA pseudouridylate synthase SII_RS00635 PF00905 Penicillin binding protein transpeptidase domain SII_RS00635 PF00912 Transglycosylase SII_RS00640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SII_RS00645 PF00467 KOW motif SII_RS00645 PF02357 Transcription termination factor nusG SII_RS00660 PF00318 Ribosomal protein S2 SII_RS00665 PF00889 Elongation factor TS SII_RS00675 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) SII_RS00680 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS00680 PF02861 Clp amino terminal domain SII_RS00680 PF07724 AAA domain (Cdc48 subfamily) SII_RS00680 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS00685 PF00583 Acetyltransferase (GNAT) family SII_RS00690 PF01207 Dihydrouridine synthase (Dus) SII_RS00695 PF01430 Hsp33 protein SII_RS00700 PF05816 SII_RS00700 SII_RS00715 PF13508 Acetyltransferase (GNAT) domain SII_RS00725 PF00709 Adenylosuccinate synthetase SII_RS00740 PF14437 SII_RS00740 SII_RS00750 PF00440 Bacterial regulatory proteins, tetR family SII_RS00760 PF00342 Phosphoglucose isomerase SII_RS00765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SII_RS00765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SII_RS00770 PF00825 Ribonuclease P SII_RS00775 PF02096 60Kd inner membrane protein SII_RS00780 PF01424 R3H domain SII_RS00780 PF13083 KH domain SII_RS00780 PF14804 Jag N-terminus SII_RS00795 PF00468 Ribosomal protein L34 SII_RS00800 PF01026 TatD related DNase SII_RS00805 PF01751 Toprim domain SII_RS00805 PF13331 SII_RS00805 SII_RS00810 PF06013 Proteins of 100 residues with WXG SII_RS00815 PF16888 SII_RS00815 SII_RS00825 PF13780 SII_RS00825 SII_RS00830 PF04740 SII_RS00830 SII_RS00860 PF10140 WXG100 protein secretion system (Wss), protein YukC SII_RS00865 PF01580 FtsK/SpoIIIE family SII_RS00885 PF13780 SII_RS00885 SII_RS00900 PF14021 SII_RS00900 SII_RS00905 PF15597 SII_RS00905 SII_RS00910 PF15597 SII_RS00910 SII_RS00915 PF15597 SII_RS00915 SII_RS00955 PF00398 Ribosomal RNA adenine dimethylase SII_RS00975 PF00834 Ribulose-phosphate 3 epimerase family SII_RS00980 PF04263 Thiamin pyrophosphokinase, catalytic domain SII_RS00980 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SII_RS00985 PF02646 SII_RS00985 SII_RS00990 PF01966 HD domain SII_RS00995 PF00156 Phosphoribosyl transferase domain SII_RS00995 PF09182 Bacterial purine repressor, N-terminal SII_RS01000 PF00164 Ribosomal protein S12/S23 SII_RS01005 PF00177 Ribosomal protein S7p/S5e SII_RS01010 PF00009 Elongation factor Tu GTP binding domain SII_RS01010 PF00679 Elongation factor G C-terminus SII_RS01010 PF03144 Elongation factor Tu domain 2 SII_RS01010 PF03764 Elongation factor G, domain IV SII_RS01010 PF14492 Elongation Factor G, domain II SII_RS01015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SII_RS01015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SII_RS01020 PF00753 Metallo-beta-lactamase superfamily SII_RS01020 PF07521 RNA-metabolising metallo-beta-lactamase SII_RS01025 PF07288 Protein of unknown function (DUF1447) SII_RS01030 PF00814 Glycoprotease family SII_RS01035 PF13673 Acetyltransferase (GNAT) domain SII_RS01040 PF00814 Glycoprotease family SII_RS01045 PF03591 SII_RS01045 SII_RS01050 PF05437 SII_RS01050 SII_RS01070 PF02517 CAAX protease self-immunity SII_RS01075 PF07739 TipAS antibiotic-recognition domain SII_RS01075 PF13411 MerR HTH family regulatory protein SII_RS01080 PF00293 NUDIX domain SII_RS01085 PF03486 HI0933-like protein SII_RS01090 PF04394 SII_RS01090 SII_RS01100 PF03009 Glycerophosphoryl diester phosphodiesterase family SII_RS01100 PF10110 SII_RS01100 SII_RS01105 PF02575 YbaB/EbfC DNA-binding family SII_RS01110 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SII_RS01110 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SII_RS01110 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SII_RS01115 PF00230 Major intrinsic protein SII_RS01125 PF14506 CppA N-terminal SII_RS01125 PF14507 CppA C-terminal SII_RS01130 PF00144 Beta-lactamase SII_RS01135 PF00288 GHMP kinases N terminal domain SII_RS01135 PF08544 GHMP kinases C terminal SII_RS01140 PF00288 GHMP kinases N terminal domain SII_RS01145 PF00288 GHMP kinases N terminal domain SII_RS01145 PF08544 GHMP kinases C terminal SII_RS01150 PF01070 FMN-dependent dehydrogenase SII_RS01155 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SII_RS01160 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SII_RS01160 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SII_RS01165 PF12821 SII_RS01165 SII_RS01170 PF06738 SII_RS01170 SII_RS01175 PF01228 Glycine radical SII_RS01175 PF02901 Pyruvate formate lyase SII_RS01180 PF00817 impB/mucB/samB family SII_RS01180 PF11798 IMS family HHH motif SII_RS01180 PF11799 impB/mucB/samB family C-terminal domain SII_RS01185 PF13538 UvrD-like helicase C-terminal domain SII_RS01185 PF13604 AAA domain SII_RS01185 PF14490 Helix-hairpin-helix containing domain SII_RS01190 PF00717 Peptidase S24-like SII_RS01195 PF01351 Ribonuclease HII SII_RS01195 PF11858 Domain of unknown function (DUF3378) SII_RS01205 PF02674 SII_RS01205 SII_RS01210 PF00488 MutS domain V SII_RS01210 PF01713 Smr domain SII_RS01215 PF03577 SII_RS01215 SII_RS01220 PF00085 Thioredoxin SII_RS01225 PF13520 Amino acid permease SII_RS01230 PF00924 Mechanosensitive ion channel SII_RS01235 PF10026 SII_RS01235 SII_RS01245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SII_RS01245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SII_RS01250 PF01180 Dihydroorotate dehydrogenase SII_RS01255 PF01625 Peptide methionine sulfoxide reductase SII_RS01255 PF01641 SelR domain SII_RS01260 PF01979 Amidohydrolase family SII_RS01270 PF00480 ROK family SII_RS01275 PF02378 Phosphotransferase system, EIIC SII_RS01285 PF00722 Glycosyl hydrolases family 16 SII_RS01285 PF02018 Carbohydrate binding domain SII_RS01290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS01295 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS01300 PF00440 Bacterial regulatory proteins, tetR family SII_RS01305 PF01554 MatE SII_RS01310 PF13787 SII_RS01310 SII_RS01315 PF02311 AraC-like ligand binding domain SII_RS01315 PF12833 Helix-turn-helix domain SII_RS01320 PF00232 Glycosyl hydrolase family 1 SII_RS01340 PF07728 AAA domain (dynein-related subfamily) SII_RS01345 PF10117 SII_RS01345 SII_RS01350 PF13302 Acetyltransferase (GNAT) domain SII_RS01360 PF00072 Response regulator receiver domain SII_RS01360 PF00486 Transcriptional regulatory protein, C terminal SII_RS01365 PF00512 His Kinase A (phospho-acceptor) domain SII_RS01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS01370 PF12730 SII_RS01370 SII_RS01375 PF00005 ABC transporter SII_RS01380 PF00128 Alpha amylase, catalytic domain SII_RS01380 PF16657 SII_RS01380 SII_RS01385 PF02361 Cobalt transport protein SII_RS01390 PF00005 ABC transporter SII_RS01395 PF09819 SII_RS01395 SII_RS01400 PF01717 Cobalamin-independent synthase, Catalytic domain SII_RS01400 PF08267 Cobalamin-independent synthase, N-terminal domain SII_RS01410 PF02611 CDP-diacylglycerol pyrophosphatase SII_RS01415 PF00085 Thioredoxin SII_RS01430 PF09992 Predicted periplasmic protein (DUF2233) SII_RS01435 PF00535 Glycosyl transferase family 2 SII_RS01435 PF04138 SII_RS01435 SII_RS01440 PF01580 FtsK/SpoIIIE family SII_RS01465 PF13780 SII_RS01465 SII_RS01480 PF01250 Ribosomal protein S6 SII_RS01485 PF00436 Single-strand binding protein family SII_RS01490 PF01084 Ribosomal protein S18 SII_RS01495 PF13673 Acetyltransferase (GNAT) domain SII_RS01500 PF06570 SII_RS01500 SII_RS01505 PF01544 CorA-like Mg2+ transporter protein SII_RS01510 PF00005 ABC transporter SII_RS01520 PF00557 Metallopeptidase family M24 SII_RS01520 PF01321 Creatinase/Prolidase N-terminal domain SII_RS01525 PF01132 Elongation factor P (EF-P) OB domain SII_RS01525 PF08207 Elongation factor P (EF-P) KOW-like domain SII_RS01525 PF09285 Elongation factor P, C-terminal SII_RS01530 PF03780 SII_RS01530 SII_RS01535 PF01029 NusB family SII_RS01625 PF07155 ECF-type riboflavin transporter, S component SII_RS01635 PF01381 Helix-turn-helix SII_RS01650 PF01048 Phosphorylase superfamily SII_RS01655 PF00005 ABC transporter SII_RS01655 PF12558 SII_RS01655 SII_RS01660 PF02361 Cobalt transport protein SII_RS01665 PF00106 short chain dehydrogenase SII_RS01670 PF01501 Glycosyl transferase family 8 SII_RS01675 PF01501 Glycosyl transferase family 8 SII_RS01680 PF02527 rRNA small subunit methyltransferase G SII_RS01685 PF04011 LemA family SII_RS01690 PF01435 Peptidase family M48 SII_RS01700 PF02620 SII_RS01700 SII_RS01705 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SII_RS01705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SII_RS01710 PF00072 Response regulator receiver domain SII_RS01710 PF00486 Transcriptional regulatory protein, C terminal SII_RS01715 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS01720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS01720 PF00367 phosphotransferase system, EIIB SII_RS01720 PF02378 Phosphotransferase system, EIIC SII_RS01725 PF03372 Endonuclease/Exonuclease/phosphatase family SII_RS01735 PF03477 ATP cone domain SII_RS01740 PF07261 Replication initiation and membrane attachment SII_RS01745 PF01695 IstB-like ATP binding protein SII_RS01745 PF07319 Primosomal protein DnaI N-terminus SII_RS01750 PF00881 Nitroreductase family SII_RS01755 PF01926 50S ribosome-binding GTPase SII_RS01755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SII_RS01760 PF00176 SNF2 family N-terminal domain SII_RS01760 PF00271 Helicase conserved C-terminal domain SII_RS01760 PF08455 SII_RS01760 SII_RS01770 PF01225 Mur ligase family, catalytic domain SII_RS01770 PF02875 Mur ligase family, glutamate ligase domain SII_RS01770 PF08245 Mur ligase middle domain SII_RS01775 PF13673 Acetyltransferase (GNAT) domain SII_RS01780 PF13673 Acetyltransferase (GNAT) domain SII_RS01785 PF02618 YceG-like family SII_RS01790 PF01272 Transcription elongation factor, GreA/GreB, C-term SII_RS01790 PF03449 Transcription elongation factor, N-terminal SII_RS01795 PF00293 NUDIX domain SII_RS01800 PF02096 60Kd inner membrane protein SII_RS01805 PF00708 Acylphosphatase SII_RS01810 PF00588 SpoU rRNA Methylase family SII_RS01810 PF08032 RNA 2'-O ribose methyltransferase substrate binding SII_RS01815 PF01966 HD domain SII_RS01820 PF01027 Inhibitor of apoptosis-promoting Bax1 SII_RS01825 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SII_RS01825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SII_RS01830 PF03672 SII_RS01830 SII_RS01835 PF01177 Asp/Glu/Hydantoin racemase SII_RS01840 PF01725 Ham1 family SII_RS01845 PF12850 Calcineurin-like phosphoesterase superfamily domain SII_RS01850 PF00571 CBS domain SII_RS01855 PF00589 Phage integrase family SII_RS01860 PF02616 ScpA/B protein SII_RS01865 PF04079 Putative transcriptional regulators (Ypuh-like) SII_RS01870 PF00849 RNA pseudouridylate synthase SII_RS01870 PF01479 S4 domain SII_RS01875 PF01809 SII_RS01875 SII_RS01880 PF02386 Cation transport protein SII_RS01885 PF02080 TrkA-C domain SII_RS01885 PF02254 TrkA-N domain SII_RS01890 PF00588 SpoU rRNA Methylase family SII_RS01895 PF12822 Protein of unknown function (DUF3816) SII_RS01900 PF01569 PAP2 superfamily SII_RS01905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SII_RS01910 PF04055 Radical SAM superfamily SII_RS01910 PF16199 SII_RS01910 SII_RS01915 PF06962 Putative rRNA methylase SII_RS01925 PF00999 Sodium/hydrogen exchanger family SII_RS01930 PF08860 Domain of unknown function (DUF1827) SII_RS01935 PF00293 NUDIX domain SII_RS01940 PF08279 HTH domain SII_RS01940 PF13280 SII_RS01940 SII_RS01945 PF06445 GyrI-like small molecule binding domain SII_RS01950 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS01950 PF02151 UvrB/uvrC motif SII_RS01950 PF07724 AAA domain (Cdc48 subfamily) SII_RS01950 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS01955 PF08796 Protein of unknown function (DUF1797) SII_RS01960 PF04023 FeoA domain SII_RS01965 PF02421 Ferrous iron transport protein B SII_RS01965 PF07664 SII_RS01965 SII_RS01965 PF07670 Nucleoside recognition SII_RS01970 PF08020 Protein of unknown function (DUF1706) SII_RS01980 PF02687 SII_RS01980 SII_RS01985 PF00005 ABC transporter SII_RS01990 PF02687 SII_RS01990 SII_RS01995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SII_RS01995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SII_RS02000 PF01256 Carbohydrate kinase SII_RS02005 PF02601 SII_RS02005 SII_RS02005 PF13742 SII_RS02005 SII_RS02010 PF02609 Exonuclease VII small subunit SII_RS02015 PF00348 Polyprenyl synthetase SII_RS02020 PF01728 FtsJ-like methyltransferase SII_RS02025 PF01316 Arginine repressor, DNA binding domain SII_RS02025 PF02863 Arginine repressor, C-terminal domain SII_RS02030 PF02463 RecF/RecN/SMC N terminal domain SII_RS02040 PF01497 Periplasmic binding protein SII_RS02045 PF00005 ABC transporter SII_RS02050 PF01032 FecCD transport family SII_RS02055 PF01032 FecCD transport family SII_RS02060 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS02065 PF00216 Bacterial DNA-binding protein SII_RS02070 PF01475 Ferric uptake regulator family SII_RS02075 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS02080 PF00905 Penicillin binding protein transpeptidase domain SII_RS02080 PF03717 Penicillin-binding Protein dimerisation domain SII_RS02085 PF02132 RecR protein SII_RS02085 PF13662 Toprim domain SII_RS02090 PF01820 D-ala D-ala ligase N-terminus SII_RS02090 PF07478 D-ala D-ala ligase C-terminus SII_RS02095 PF01225 Mur ligase family, catalytic domain SII_RS02095 PF02875 Mur ligase family, glutamate ligase domain SII_RS02095 PF08245 Mur ligase middle domain SII_RS02100 PF08002 Protein of unknown function (DUF1697) SII_RS02105 PF09529 SII_RS02105 SII_RS02110 PF09529 SII_RS02110 SII_RS02115 PF01381 Helix-turn-helix SII_RS02125 PF00009 Elongation factor Tu GTP binding domain SII_RS02125 PF03144 Elongation factor Tu domain 2 SII_RS02125 PF16658 SII_RS02125 SII_RS02130 PF01544 CorA-like Mg2+ transporter protein SII_RS02140 PF00270 DEAD/DEAH box helicase SII_RS02140 PF00271 Helicase conserved C-terminal domain SII_RS02145 PF01791 DeoC/LacD family aldolase SII_RS02155 PF02502 Ribose/Galactose Isomerase SII_RS02160 PF02502 Ribose/Galactose Isomerase SII_RS02165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS02170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS02175 PF03611 SII_RS02175 SII_RS02180 PF00294 pfkB family carbohydrate kinase SII_RS02185 PF00703 Glycosyl hydrolases family 2 SII_RS02185 PF00728 Glycosyl hydrolase family 20, catalytic domain SII_RS02185 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SII_RS02185 PF02837 Glycosyl hydrolases family 2, sugar binding domain SII_RS02185 PF07532 SII_RS02185 SII_RS02185 PF16355 SII_RS02185 SII_RS02190 PF00874 PRD domain SII_RS02190 PF03123 CAT RNA binding domain SII_RS02195 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS02200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS02200 PF02378 Phosphotransferase system, EIIC SII_RS02205 PF00232 Glycosyl hydrolase family 1 SII_RS02210 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SII_RS02215 PF01541 GIY-YIG catalytic domain SII_RS02220 PF05175 Methyltransferase small domain SII_RS02225 PF01197 Ribosomal protein L31 SII_RS02230 PF01368 DHH family SII_RS02230 PF02272 DHHA1 domain SII_RS02235 PF00258 Flavodoxin SII_RS02240 PF01458 Uncharacterized protein family (UPF0051) SII_RS02245 PF01594 SII_RS02245 SII_RS02250 PF13181 Tetratricopeptide repeat SII_RS02255 PF00205 Thiamine pyrophosphate enzyme, central domain SII_RS02255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SII_RS02255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SII_RS02260 PF03306 Alpha-acetolactate decarboxylase SII_RS02265 PF05670 SII_RS02265 SII_RS02265 PF05833 Fibronectin-binding protein A N-terminus (FbpA) SII_RS02270 PF04392 ABC transporter substrate binding protein SII_RS02275 PF02653 SII_RS02275 SII_RS02280 PF00005 ABC transporter SII_RS02290 PF02229 Transcriptional Coactivator p15 (PC4) SII_RS02325 PF00005 ABC transporter SII_RS02325 PF13732 SII_RS02325 SII_RS02330 PF12698 ABC-2 family transporter protein SII_RS02335 PF12705 PD-(D/E)XK nuclease superfamily SII_RS02340 PF00580 UvrD/REP helicase N-terminal domain SII_RS02340 PF12705 PD-(D/E)XK nuclease superfamily SII_RS02340 PF13361 UvrD-like helicase C-terminal domain SII_RS02345 PF00128 Alpha amylase, catalytic domain SII_RS02345 PF02806 Alpha amylase, C-terminal all-beta domain SII_RS02345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS02350 PF00483 Nucleotidyl transferase SII_RS02355 PF00483 Nucleotidyl transferase SII_RS02360 PF00534 Glycosyl transferases group 1 SII_RS02360 PF08323 Starch synthase catalytic domain SII_RS02365 PF00343 Carbohydrate phosphorylase SII_RS02370 PF00137 ATP synthase subunit C SII_RS02375 PF00119 ATP synthase A chain SII_RS02380 PF00430 ATP synthase B/B' CF(0) SII_RS02385 PF00213 ATP synthase delta (OSCP) subunit SII_RS02390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS02390 PF00306 ATP synthase alpha/beta chain, C terminal domain SII_RS02390 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS02395 PF00231 ATP synthase SII_RS02400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SII_RS02400 PF02874 ATP synthase alpha/beta family, beta-barrel domain SII_RS02405 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SII_RS02405 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SII_RS02410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS02415 PF11772 SII_RS02415 SII_RS02420 PF01223 DNA/RNA non-specific endonuclease SII_RS02425 PF00005 ABC transporter SII_RS02425 PF00664 ABC transporter transmembrane region SII_RS02430 PF00005 ABC transporter SII_RS02430 PF00664 ABC transporter transmembrane region SII_RS02435 PF02698 DUF218 domain SII_RS02445 PF03788 SII_RS02445 SII_RS02450 PF04172 SII_RS02450 SII_RS02455 PF00156 Phosphoribosyl transferase domain SII_RS02460 PF04204 Homoserine O-succinyltransferase SII_RS02465 PF04204 Homoserine O-succinyltransferase SII_RS02470 PF07261 Replication initiation and membrane attachment SII_RS02470 PF13412 Winged helix-turn-helix DNA-binding SII_RS02475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS02475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS02485 PF01433 Peptidase family M1 SII_RS02485 PF11838 ERAP1-like C-terminal domain SII_RS02490 PF00455 SII_RS02490 SII_RS02490 PF08220 DeoR-like helix-turn-helix domain SII_RS02495 PF00294 pfkB family carbohydrate kinase SII_RS02500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS02500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS02500 PF02378 Phosphotransferase system, EIIC SII_RS02505 PF06619 Protein of unknown function (DUF1149) SII_RS02510 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS02515 PF01113 Dihydrodipicolinate reductase, N-terminus SII_RS02515 PF05173 Dihydrodipicolinate reductase, C-terminus SII_RS02520 PF01743 Poly A polymerase head domain SII_RS02520 PF12627 Probable RNA and SrmB- binding site of polymerase A SII_RS02520 PF13735 tRNA nucleotidyltransferase domain 2 putative SII_RS02525 PF00005 ABC transporter SII_RS02525 PF12848 ABC transporter SII_RS02525 PF16326 SII_RS02525 SII_RS02530 PF01409 tRNA synthetases class II core domain (F) SII_RS02530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SII_RS02535 PF00583 Acetyltransferase (GNAT) family SII_RS02540 PF01588 Putative tRNA binding domain SII_RS02540 PF03147 Ferredoxin-fold anticodon binding domain SII_RS02540 PF03483 B3/4 domain SII_RS02540 PF03484 tRNA synthetase B5 domain SII_RS02545 PF02632 BioY family SII_RS02550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS02550 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS02560 PF01715 IPP transferase SII_RS02565 PF01926 50S ribosome-binding GTPase SII_RS02565 PF13167 SII_RS02565 SII_RS02565 PF16360 SII_RS02565 SII_RS02575 PF00753 Metallo-beta-lactamase superfamily SII_RS02575 PF12706 Beta-lactamase superfamily domain SII_RS02580 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS02585 PF00106 short chain dehydrogenase SII_RS02590 PF08241 Methyltransferase domain SII_RS02595 PF13673 Acetyltransferase (GNAT) domain SII_RS02600 PF01368 DHH family SII_RS02600 PF02272 DHHA1 domain SII_RS02600 PF10141 SII_RS02600 SII_RS02605 PF00005 ABC transporter SII_RS02610 PF00392 Bacterial regulatory proteins, gntR family SII_RS02615 PF02811 PHP domain SII_RS02615 PF07733 Bacterial DNA polymerase III alpha subunit SII_RS02615 PF14579 Helix-hairpin-helix motif SII_RS02620 PF00365 Phosphofructokinase SII_RS02625 PF00224 Pyruvate kinase, barrel domain SII_RS02625 PF02887 Pyruvate kinase, alpha/beta domain SII_RS02630 PF00717 Peptidase S24-like SII_RS02640 PF01545 Cation efflux family SII_RS02640 PF16916 SII_RS02640 SII_RS02645 PF00580 UvrD/REP helicase N-terminal domain SII_RS02645 PF13361 UvrD-like helicase C-terminal domain SII_RS02650 PF00293 NUDIX domain SII_RS02655 PF00440 Bacterial regulatory proteins, tetR family SII_RS02660 PF00005 ABC transporter SII_RS02660 PF00664 ABC transporter transmembrane region SII_RS02665 PF00005 ABC transporter SII_RS02665 PF00664 ABC transporter transmembrane region SII_RS02675 PF12697 Alpha/beta hydrolase family SII_RS02680 PF09903 SII_RS02680 SII_RS02690 PF01509 TruB family pseudouridylate synthase (N terminal domain) SII_RS02690 PF16198 SII_RS02690 SII_RS02695 PF01687 Riboflavin kinase SII_RS02695 PF06574 FAD synthetase SII_RS02700 PF03960 ArsC family SII_RS02705 PF05256 Uncharacterised protein family (UPF0223) SII_RS02710 PF00459 Inositol monophosphatase family SII_RS02715 PF01189 NOL1/NOP2/sun family SII_RS02715 PF13636 pre-rRNA processing and ribosome biogenesis SII_RS02715 PF17125 SII_RS02715 SII_RS02715 PF17126 SII_RS02715 SII_RS02720 PF12849 PBP superfamily domain SII_RS02725 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS02730 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS02735 PF00005 ABC transporter SII_RS02740 PF00005 ABC transporter SII_RS02745 PF01895 PhoU domain SII_RS02750 PF04002 RadC-like JAB domain SII_RS02765 PF02629 CoA binding domain SII_RS02765 PF06971 Putative DNA-binding protein N-terminus SII_RS02770 PF08866 Putative amino acid metabolism SII_RS02775 PF00266 Aminotransferase class-V SII_RS02780 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SII_RS02780 PF14572 Phosphoribosyl synthetase-associated domain SII_RS02785 PF01928 CYTH domain SII_RS02790 PF04607 Region found in RelA / SpoT proteins SII_RS02795 PF01513 ATP-NAD kinase SII_RS02800 PF00849 RNA pseudouridylate synthase SII_RS02805 PF01515 Phosphate acetyl/butaryl transferase SII_RS02810 PF00633 Helix-hairpin-helix motif SII_RS02810 PF00730 HhH-GPD superfamily base excision DNA repair protein SII_RS02810 PF14815 NUDIX domain SII_RS02815 PF00085 Thioredoxin SII_RS02820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS02820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02825 PF12822 Protein of unknown function (DUF3816) SII_RS02830 PF02441 Flavoprotein SII_RS02835 PF04127 DNA / pantothenate metabolism flavoprotein SII_RS02845 PF01268 Formate--tetrahydrofolate ligase SII_RS02855 PF08713 DNA alkylation repair enzyme SII_RS02860 PF06912 SII_RS02860 SII_RS02865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SII_RS02865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SII_RS02870 PF07690 Major Facilitator Superfamily SII_RS02875 PF09323 SII_RS02875 SII_RS02880 PF03773 SII_RS02880 SII_RS02885 PF00575 S1 RNA binding domain SII_RS02885 PF09371 Tex-like protein N-terminal domain SII_RS02885 PF12836 Helix-hairpin-helix motif SII_RS02885 PF16921 SII_RS02885 SII_RS02890 PF10263 SII_RS02890 SII_RS02895 PF04024 SII_RS02895 SII_RS02900 PF00293 NUDIX domain SII_RS02905 PF02603 HPr Serine kinase N terminus SII_RS02905 PF07475 HPr Serine kinase C-terminal domain SII_RS02910 PF01790 SII_RS02910 SII_RS02915 PF06103 SII_RS02915 SII_RS02920 PF12732 SII_RS02920 SII_RS02925 PF11674 SII_RS02925 SII_RS02930 PF01136 SII_RS02930 SII_RS02935 PF01136 SII_RS02935 SII_RS02935 PF16325 SII_RS02935 SII_RS02940 PF00753 Metallo-beta-lactamase superfamily SII_RS02940 PF07521 RNA-metabolising metallo-beta-lactamase SII_RS02945 PF00756 Putative esterase SII_RS02950 PF00413 Matrixin SII_RS02960 PF00005 ABC transporter SII_RS02960 PF12848 ABC transporter SII_RS02965 PF06305 SII_RS02965 SII_RS02970 PF07685 CobB/CobQ-like glutamine amidotransferase domain SII_RS02975 PF08245 Mur ligase middle domain SII_RS02975 PF08353 SII_RS02975 SII_RS02980 PF02457 DisA bacterial checkpoint controller nucleotide-binding SII_RS02985 PF07949 YbbR-like protein SII_RS02990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SII_RS02990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SII_RS02990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SII_RS02990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SII_RS02995 PF12710 haloacid dehalogenase-like hydrolase SII_RS03000 PF02595 Glycerate kinase family SII_RS03010 PF13459 4Fe-4S single cluster domain SII_RS03020 PF02224 Cytidylate kinase SII_RS03025 PF00707 Translation initiation factor IF-3, C-terminal domain SII_RS03025 PF05198 Translation initiation factor IF-3, N-terminal domain SII_RS03030 PF01632 Ribosomal protein L35 SII_RS03035 PF00453 Ribosomal protein L20 SII_RS03040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS03045 PF01522 Polysaccharide deacetylase SII_RS03050 PF00270 DEAD/DEAH box helicase SII_RS03050 PF00271 Helicase conserved C-terminal domain SII_RS03055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SII_RS03060 PF00485 Phosphoribulokinase / Uridine kinase family SII_RS03065 PF01546 Peptidase family M20/M25/M40 SII_RS03065 PF07687 Peptidase dimerisation domain SII_RS03070 PF00762 Ferrochelatase SII_RS03075 PF08282 haloacid dehalogenase-like hydrolase SII_RS03080 PF00009 Elongation factor Tu GTP binding domain SII_RS03080 PF00679 Elongation factor G C-terminus SII_RS03080 PF03144 Elongation factor Tu domain 2 SII_RS03080 PF06421 GTP-binding protein LepA C-terminus SII_RS03085 PF01565 FAD binding domain SII_RS03085 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SII_RS03090 PF00005 ABC transporter SII_RS03090 PF08402 TOBE domain SII_RS03095 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS03100 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS03105 PF13416 Bacterial extracellular solute-binding protein SII_RS03110 PF01118 Semialdehyde dehydrogenase, NAD binding domain SII_RS03110 PF02774 Semialdehyde dehydrogenase, dimerisation domain SII_RS03115 PF00701 Dihydrodipicolinate synthetase family SII_RS03130 PF06445 GyrI-like small molecule binding domain SII_RS03130 PF12833 Helix-turn-helix domain SII_RS03135 PF00466 Ribosomal protein L10 SII_RS03140 PF00542 Ribosomal protein L7/L12 C-terminal domain SII_RS03140 PF16320 SII_RS03140 SII_RS03150 PF06970 Replication initiator protein A (RepA) N-terminus SII_RS03155 PF00145 C-5 cytosine-specific DNA methylase SII_RS03175 PF02517 CAAX protease self-immunity SII_RS03180 PF13338 SII_RS03180 SII_RS03185 PF08843 Nucleotidyl transferase of unknown function (DUF1814) SII_RS03200 PF02534 Type IV secretory system Conjugative DNA transfer SII_RS03210 PF04610 SII_RS03210 SII_RS03215 PF12666 SII_RS03215 SII_RS03225 PF05257 CHAP domain SII_RS03235 PF06125 Bacterial protein of unknown function (DUF961) SII_RS03240 PF06125 Bacterial protein of unknown function (DUF961) SII_RS03245 PF01580 FtsK/SpoIIIE family SII_RS03250 PF01381 Helix-turn-helix SII_RS03250 PF02486 SII_RS03250 SII_RS03250 PF07764 Omega Transcriptional Repressor SII_RS03255 PF06308 SII_RS03255 SII_RS03260 PF00398 Ribosomal RNA adenine dimethylase SII_RS03265 PF01610 SII_RS03265 SII_RS03265 PF14690 SII_RS03265 SII_RS03275 PF07275 Antirestriction protein (ArdA) SII_RS03280 PF12648 SII_RS03280 SII_RS03285 PF12846 AAA-like domain SII_RS03295 PF00009 Elongation factor Tu GTP binding domain SII_RS03295 PF00679 Elongation factor G C-terminus SII_RS03295 PF03764 Elongation factor G, domain IV SII_RS03295 PF14492 Elongation Factor G, domain II SII_RS03305 PF01381 Helix-turn-helix SII_RS03310 PF08281 Sigma-70, region 4 SII_RS03315 PF12645 SII_RS03315 SII_RS03320 PF09035 Excisionase from transposon Tn916 SII_RS03325 PF00589 Phage integrase family SII_RS03325 PF02920 DNA binding domain of tn916 integrase SII_RS03340 PF00176 SNF2 family N-terminal domain SII_RS03340 PF00271 Helicase conserved C-terminal domain SII_RS03365 PF13154 SII_RS03365 SII_RS03365 PF13155 Toprim-like SII_RS03385 PF01381 Helix-turn-helix SII_RS03390 PF06414 Zeta toxin SII_RS03395 PF02463 RecF/RecN/SMC N terminal domain SII_RS03405 PF05713 SII_RS03405 SII_RS03410 PF03432 SII_RS03410 SII_RS03415 PF01381 Helix-turn-helix SII_RS03420 PF11372 SII_RS03420 SII_RS03425 PF00589 Phage integrase family SII_RS03435 PF04055 Radical SAM superfamily SII_RS03435 PF13186 Iron-sulfur cluster-binding domain SII_RS03440 PF00005 ABC transporter SII_RS03440 PF00664 ABC transporter transmembrane region SII_RS03460 PF00005 ABC transporter SII_RS03460 PF00664 ABC transporter transmembrane region SII_RS03465 PF01782 RimM N-terminal domain SII_RS03465 PF05239 PRC-barrel domain SII_RS03470 PF01746 tRNA (Guanine-1)-methyltransferase SII_RS03475 PF01297 Periplasmic solute binding protein family SII_RS03480 PF04270 Streptococcal histidine triad protein SII_RS03490 PF08241 Methyltransferase domain SII_RS03500 PF01381 Helix-turn-helix SII_RS03505 PF12697 Alpha/beta hydrolase family SII_RS03510 PF13185 GAF domain SII_RS03515 PF12169 DNA polymerase III subunits gamma and tau domain III SII_RS03515 PF13177 DNA polymerase III, delta subunit SII_RS03520 PF11676 SII_RS03520 SII_RS03525 PF02237 Biotin protein ligase C terminal domain SII_RS03525 PF03099 Biotin/lipoate A/B protein ligase family SII_RS03525 PF08279 HTH domain SII_RS03530 PF00356 Bacterial regulatory proteins, lacI family SII_RS03530 PF13377 Periplasmic binding protein-like domain SII_RS03535 PF00288 GHMP kinases N terminal domain SII_RS03535 PF08544 GHMP kinases C terminal SII_RS03535 PF10509 Galactokinase galactose-binding signature SII_RS03540 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SII_RS03540 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SII_RS03545 PF01018 GTP1/OBG SII_RS03545 PF01926 50S ribosome-binding GTPase SII_RS03545 PF09269 Domain of unknown function (DUF1967) SII_RS03555 PF01522 Polysaccharide deacetylase SII_RS03560 PF00742 Homoserine dehydrogenase SII_RS03560 PF03447 Homoserine dehydrogenase, NAD binding domain SII_RS03565 PF00288 GHMP kinases N terminal domain SII_RS03565 PF08544 GHMP kinases C terminal SII_RS03580 PF06028 Alpha/beta hydrolase of unknown function (DUF915) SII_RS03585 PF07690 Major Facilitator Superfamily SII_RS03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SII_RS03590 PF03466 LysR substrate binding domain SII_RS03595 PF00175 Oxidoreductase NAD-binding domain SII_RS03595 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SII_RS03600 PF01180 Dihydroorotate dehydrogenase SII_RS03605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS03610 PF00719 Inorganic pyrophosphatase SII_RS03615 PF00156 Phosphoribosyl transferase domain SII_RS03620 PF06855 Protein of unknown function (DUF1250) SII_RS03625 PF02562 PhoH-like protein SII_RS03635 PF13673 Acetyltransferase (GNAT) domain SII_RS03640 PF04993 TfoX N-terminal domain SII_RS03645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SII_RS03645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SII_RS03650 PF13302 Acetyltransferase (GNAT) domain SII_RS03660 PF00005 ABC transporter SII_RS03660 PF00664 ABC transporter transmembrane region SII_RS03665 PF00005 ABC transporter SII_RS03665 PF00664 ABC transporter transmembrane region SII_RS03670 PF02130 Uncharacterized protein family UPF0054 SII_RS03675 PF01219 Prokaryotic diacylglycerol kinase SII_RS03680 PF01926 50S ribosome-binding GTPase SII_RS03680 PF07650 KH domain SII_RS03685 PF03772 SII_RS03685 SII_RS03690 PF00293 NUDIX domain SII_RS03700 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SII_RS03700 PF06827 Zinc finger found in FPG and IleRS SII_RS03700 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SII_RS03705 PF01121 Dephospho-CoA kinase SII_RS03710 PF07690 Major Facilitator Superfamily SII_RS03715 PF03840 Preprotein translocase SecG subunit SII_RS03720 PF00575 S1 RNA binding domain SII_RS03720 PF00773 RNB domain SII_RS03720 PF08206 Ribonuclease B OB domain SII_RS03725 PF01668 SmpB protein SII_RS03730 PF10531 SLBB domain SII_RS03730 PF12836 Helix-hairpin-helix motif SII_RS03735 PF03772 SII_RS03735 SII_RS03735 PF13567 SII_RS03735 SII_RS03740 PF05656 SII_RS03740 SII_RS03745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SII_RS03750 PF03167 Uracil DNA glycosylase superfamily SII_RS03755 PF00293 NUDIX domain SII_RS03760 PF01979 Amidohydrolase family SII_RS03765 PF00438 S-adenosylmethionine synthetase, N-terminal domain SII_RS03765 PF02772 S-adenosylmethionine synthetase, central domain SII_RS03765 PF02773 S-adenosylmethionine synthetase, C-terminal domain SII_RS03770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS03775 PF13302 Acetyltransferase (GNAT) domain SII_RS03780 PF00392 Bacterial regulatory proteins, gntR family SII_RS03780 PF00571 CBS domain SII_RS03780 PF03061 Thioesterase superfamily SII_RS03780 PF07085 DRTGG domain SII_RS03785 PF00557 Metallopeptidase family M24 SII_RS03790 PF03631 SII_RS03790 SII_RS03795 PF01047 MarR family SII_RS03800 PF03483 B3/4 domain SII_RS03805 PF04138 SII_RS03805 SII_RS03810 PF06177 SII_RS03810 SII_RS03815 PF13303 SII_RS03815 SII_RS03820 PF02558 Ketopantoate reductase PanE/ApbA SII_RS03820 PF08546 Ketopantoate reductase PanE/ApbA C terminal SII_RS03825 PF00533 BRCA1 C Terminus (BRCT) domain SII_RS03825 PF01653 NAD-dependent DNA ligase adenylation domain SII_RS03825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SII_RS03825 PF03120 NAD-dependent DNA ligase OB-fold domain SII_RS03825 PF12826 Helix-hairpin-helix motif SII_RS03825 PF14520 Helix-hairpin-helix domain SII_RS03830 PF00781 Diacylglycerol kinase catalytic domain SII_RS03835 PF00128 Alpha amylase, catalytic domain SII_RS03835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS03835 PF03714 Bacterial pullanase-associated domain SII_RS03840 PF00886 Ribosomal protein S16 SII_RS03845 PF13083 KH domain SII_RS03850 PF02829 3H domain SII_RS03850 PF08279 HTH domain SII_RS03855 PF07155 ECF-type riboflavin transporter, S component SII_RS03865 PF03932 CutC family SII_RS03870 PF04237 YjbR SII_RS03875 PF00005 ABC transporter SII_RS03875 PF00664 ABC transporter transmembrane region SII_RS03880 PF00005 ABC transporter SII_RS03880 PF00664 ABC transporter transmembrane region SII_RS03885 PF00155 Aminotransferase class I and II SII_RS03885 PF00392 Bacterial regulatory proteins, gntR family SII_RS03890 PF00188 Cysteine-rich secretory protein family SII_RS03890 PF00746 SII_RS03890 SII_RS03895 PF03477 ATP cone domain SII_RS03900 PF01165 Ribosomal protein S21 SII_RS03905 PF01926 50S ribosome-binding GTPase SII_RS03910 PF01351 Ribonuclease HII SII_RS03915 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS03915 PF12464 Maltose acetyltransferase SII_RS03915 PF14602 Hexapeptide repeat of succinyl-transferase SII_RS03920 PF02481 DNA recombination-mediator protein A SII_RS03925 PF01131 DNA topoisomerase SII_RS03925 PF01396 SII_RS03925 SII_RS03925 PF01751 Toprim domain SII_RS03935 PF01134 Glucose inhibited division protein A SII_RS03940 PF00756 Putative esterase SII_RS03945 PF00756 Putative esterase SII_RS03950 PF13535 ATP-grasp domain SII_RS03955 PF00589 Phage integrase family SII_RS03955 PF13495 Phage integrase, N-terminal SAM-like domain SII_RS03960 PF14311 SII_RS03960 SII_RS04000 PF01381 Helix-turn-helix SII_RS04005 PF00448 SRP54-type protein, GTPase domain SII_RS04005 PF02881 SRP54-type protein, helical bundle domain SII_RS04005 PF02978 Signal peptide binding domain SII_RS04010 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SII_RS04015 PF00392 Bacterial regulatory proteins, gntR family SII_RS04015 PF07702 UTRA domain SII_RS04020 PF00117 Glutamine amidotransferase class-I SII_RS04020 PF00958 GMP synthase C terminal domain SII_RS04020 PF02540 NAD synthase SII_RS04025 PF06028 Alpha/beta hydrolase of unknown function (DUF915) SII_RS04030 PF13702 Lysozyme-like SII_RS04035 PF04245 SII_RS04035 SII_RS04040 PF00464 Serine hydroxymethyltransferase SII_RS04045 PF01300 Telomere recombination SII_RS04050 PF05175 Methyltransferase small domain SII_RS04055 PF00472 RF-1 domain SII_RS04055 PF03462 PCRF domain SII_RS04060 PF00265 Thymidine kinase SII_RS04065 PF01361 Tautomerase enzyme SII_RS04070 PF01554 MatE SII_RS04075 PF00860 Permease family SII_RS04080 PF00156 Phosphoribosyl transferase domain SII_RS04085 PF00478 IMP dehydrogenase / GMP reductase domain SII_RS04090 PF06889 SII_RS04090 SII_RS04100 PF00654 Voltage gated chloride channel SII_RS04100 PF02080 TrkA-C domain SII_RS04105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04110 PF02424 ApbE family SII_RS04115 PF03358 NADPH-dependent FMN reductase SII_RS04120 PF03358 NADPH-dependent FMN reductase SII_RS04120 PF13596 PAS domain SII_RS04125 PF00005 ABC transporter SII_RS04130 PF06182 SII_RS04130 SII_RS04135 PF06182 SII_RS04135 SII_RS04140 PF00672 HAMP domain SII_RS04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04140 PF02743 Cache domain SII_RS04140 PF06580 SII_RS04140 SII_RS04145 PF00072 Response regulator receiver domain SII_RS04145 PF12833 Helix-turn-helix domain SII_RS04150 PF01625 Peptide methionine sulfoxide reductase SII_RS04150 PF01641 SelR domain SII_RS04155 PF08534 Redoxin SII_RS04160 PF02683 SII_RS04160 SII_RS04165 PF05525 SII_RS04165 SII_RS04170 PF01883 Domain of unknown function DUF59 SII_RS04175 PF00140 Sigma-70 factor, region 1 SII_RS04175 PF03979 Sigma-70 factor, region 1 SII_RS04175 PF04539 Sigma-70 region 3 SII_RS04175 PF04542 Sigma-70 region 2 SII_RS04175 PF04545 Sigma-70, region 4 SII_RS04180 PF01807 CHC2 zinc finger SII_RS04180 PF08275 DNA primase catalytic core, N-terminal domain SII_RS04180 PF13155 Toprim-like SII_RS04185 PF01741 Large-conductance mechanosensitive channel, MscL SII_RS04190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04190 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04195 PF04203 Sortase family SII_RS04200 PF00521 DNA gyrase/topoisomerase IV, subunit A SII_RS04200 PF03989 DNA gyrase C-terminal domain, beta-propeller SII_RS04205 PF00056 lactate/malate dehydrogenase, NAD binding domain SII_RS04205 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SII_RS04210 PF00665 Integrase core domain SII_RS04210 PF13936 Helix-turn-helix domain SII_RS04215 PF00293 NUDIX domain SII_RS04225 PF00575 S1 RNA binding domain SII_RS04240 PF11184 SII_RS04240 SII_RS04245 PF01063 Aminotransferase class IV SII_RS04250 PF00521 DNA gyrase/topoisomerase IV, subunit A SII_RS04250 PF03989 DNA gyrase C-terminal domain, beta-propeller SII_RS04255 PF04439 Streptomycin adenylyltransferase SII_RS04260 PF00204 DNA gyrase B SII_RS04260 PF00986 DNA gyrase B subunit, carboxyl terminus SII_RS04260 PF01751 Toprim domain SII_RS04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04265 PF02660 SII_RS04265 SII_RS04275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SII_RS04280 PF00440 Bacterial regulatory proteins, tetR family SII_RS04285 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS04290 PF11750 SII_RS04290 SII_RS04295 PF16264 SII_RS04295 SII_RS04300 PF02146 Sir2 family SII_RS04305 PF00113 Enolase, C-terminal TIM barrel domain SII_RS04305 PF03952 Enolase, N-terminal domain SII_RS04315 PF07997 Protein of unknown function (DUF1694) SII_RS04335 PF07690 Major Facilitator Superfamily SII_RS04340 PF00152 tRNA synthetases class II (D, K and N) SII_RS04340 PF01336 OB-fold nucleic acid binding domain SII_RS04345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS04350 PF00155 Aminotransferase class I and II SII_RS04360 PF01047 MarR family SII_RS04365 PF03358 NADPH-dependent FMN reductase SII_RS04370 PF03883 SII_RS04370 SII_RS04375 PF08876 SII_RS04375 SII_RS04380 PF03006 SII_RS04380 SII_RS04385 PF02653 SII_RS04385 SII_RS04390 PF02653 SII_RS04390 SII_RS04395 PF00005 ABC transporter SII_RS04400 PF02608 Basic membrane protein SII_RS04405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SII_RS04410 PF01791 DeoC/LacD family aldolase SII_RS04415 PF00591 Glycosyl transferase family, a/b domain SII_RS04415 PF02885 Glycosyl transferase family, helical bundle domain SII_RS04415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SII_RS04420 PF05175 Methyltransferase small domain SII_RS04425 PF00485 Phosphoribulokinase / Uridine kinase family SII_RS04430 PF01649 Ribosomal protein S20 SII_RS04440 PF00128 Alpha amylase, catalytic domain SII_RS04440 PF09154 Domain of unknown function (DUF1939) SII_RS04445 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04450 PF00072 Response regulator receiver domain SII_RS04450 PF00486 Transcriptional regulatory protein, C terminal SII_RS04470 PF01245 Ribosomal protein L19 SII_RS04475 PF00480 ROK family SII_RS04480 PF02142 MGS-like domain SII_RS04480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SII_RS04480 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SII_RS04485 PF00117 Glutamine amidotransferase class-I SII_RS04485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SII_RS04490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SII_RS04490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SII_RS04495 PF00860 Permease family SII_RS04500 PF00156 Phosphoribosyl transferase domain SII_RS04505 PF04270 Streptococcal histidine triad protein SII_RS04505 PF13516 Leucine Rich repeat SII_RS04510 PF02650 WhiA C-terminal HTH domain SII_RS04510 PF10298 WhiA N-terminal LAGLIDADG-like domain SII_RS04510 PF14527 WhiA LAGLIDADG-like domain SII_RS04515 PF01933 Uncharacterised protein family UPF0052 SII_RS04520 PF03668 SII_RS04520 SII_RS04525 PF00334 Nucleoside diphosphate kinase SII_RS04530 PF02517 CAAX protease self-immunity SII_RS04535 PF07314 SII_RS04535 SII_RS04540 PF13242 HAD-hyrolase-like SII_RS04540 PF13344 Haloacid dehalogenase-like hydrolase SII_RS04545 PF00293 NUDIX domain SII_RS04545 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal SII_RS04550 PF01643 Acyl-ACP thioesterase SII_RS04555 PF04055 Radical SAM superfamily SII_RS04555 PF06969 HemN C-terminal domain SII_RS04560 PF08002 Protein of unknown function (DUF1697) SII_RS04565 PF00583 Acetyltransferase (GNAT) family SII_RS04575 PF00271 Helicase conserved C-terminal domain SII_RS04575 PF02151 UvrB/uvrC motif SII_RS04575 PF04851 Type III restriction enzyme, res subunit SII_RS04575 PF12344 Ultra-violet resistance protein B SII_RS04580 PF00497 Bacterial extracellular solute-binding proteins, family 3 SII_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS04585 PF00005 ABC transporter SII_RS04590 PF00005 ABC transporter SII_RS04595 PF00005 ABC transporter SII_RS04595 PF00664 ABC transporter transmembrane region SII_RS04600 PF00005 ABC transporter SII_RS04600 PF00664 ABC transporter transmembrane region SII_RS04605 PF01226 Formate/nitrite transporter SII_RS04610 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SII_RS04615 PF01926 50S ribosome-binding GTPase SII_RS04620 PF06689 ClpX C4-type zinc finger SII_RS04620 PF07724 AAA domain (Cdc48 subfamily) SII_RS04620 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS04630 PF00186 Dihydrofolate reductase SII_RS04640 PF00303 Thymidylate synthase SII_RS04645 PF00654 Voltage gated chloride channel SII_RS04650 PF01817 Chorismate mutase type II SII_RS04665 PF03831 PhnA protein SII_RS04665 PF08274 PhnA Zinc-Ribbon SII_RS04670 PF01636 Phosphotransferase enzyme family SII_RS04680 PF00849 RNA pseudouridylate synthase SII_RS04680 PF01479 S4 domain SII_RS04685 PF01252 SII_RS04685 SII_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SII_RS04690 PF03466 LysR substrate binding domain SII_RS04700 PF04073 Aminoacyl-tRNA editing domain SII_RS04705 PF00581 Rhodanese-like domain SII_RS04710 PF00581 Rhodanese-like domain SII_RS04710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SII_RS04710 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS04715 PF01016 Ribosomal L27 protein SII_RS04720 PF04327 Protein of unknown function (DUF464) SII_RS04725 PF00829 Ribosomal prokaryotic L21 protein SII_RS04730 PF04191 Phospholipid methyltransferase SII_RS04735 PF02568 Thiamine biosynthesis protein (ThiI) SII_RS04735 PF02926 THUMP domain SII_RS04740 PF00266 Aminotransferase class-V SII_RS04745 PF06874 SII_RS04745 SII_RS04750 PF03618 SII_RS04750 SII_RS04755 PF00571 CBS domain SII_RS04755 PF08279 HTH domain SII_RS04760 PF00391 PEP-utilising enzyme, mobile domain SII_RS04760 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SII_RS04760 PF02896 PEP-utilising enzyme, TIM barrel domain SII_RS04770 PF00448 SRP54-type protein, GTPase domain SII_RS04770 PF02881 SRP54-type protein, helical bundle domain SII_RS04775 PF08282 haloacid dehalogenase-like hydrolase SII_RS04780 PF08282 haloacid dehalogenase-like hydrolase SII_RS04785 PF02463 RecF/RecN/SMC N terminal domain SII_RS04785 PF06470 SMC proteins Flexible Hinge Domain SII_RS04790 PF00035 Double-stranded RNA binding motif SII_RS04790 PF14622 Ribonuclease-III-like SII_RS04795 PF04304 SII_RS04795 SII_RS04800 PF00753 Metallo-beta-lactamase superfamily SII_RS04805 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04805 PF00989 PAS fold SII_RS04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04810 PF00072 Response regulator receiver domain SII_RS04810 PF00486 Transcriptional regulatory protein, C terminal SII_RS04820 PF00534 Glycosyl transferases group 1 SII_RS04820 PF13439 Glycosyltransferase Family 4 SII_RS04825 PF00534 Glycosyl transferases group 1 SII_RS04825 PF13439 Glycosyltransferase Family 4 SII_RS04830 PF00356 Bacterial regulatory proteins, lacI family SII_RS04830 PF13377 Periplasmic binding protein-like domain SII_RS04835 PF00557 Metallopeptidase family M24 SII_RS04835 PF01321 Creatinase/Prolidase N-terminal domain SII_RS04840 PF08242 Methyltransferase domain SII_RS04845 PF16363 SII_RS04845 SII_RS04850 PF16363 SII_RS04850 SII_RS04855 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SII_RS04860 PF00483 Nucleotidyl transferase SII_RS04865 PF00293 NUDIX domain SII_RS04870 PF01784 NIF3 (NGG1p interacting factor 3) SII_RS04875 PF04816 Family of unknown function (DUF633) SII_RS04880 PF00884 Sulfatase SII_RS04885 PF05045 SII_RS04885 SII_RS04890 PF00005 ABC transporter SII_RS04895 PF01061 SII_RS04895 SII_RS04900 PF00535 Glycosyl transferase family 2 SII_RS04905 PF00534 Glycosyl transferases group 1 SII_RS04905 PF09314 SII_RS04905 SII_RS04910 PF00534 Glycosyl transferases group 1 SII_RS04915 PF09913 SII_RS04915 SII_RS04920 PF00535 Glycosyl transferase family 2 SII_RS04920 PF05045 SII_RS04920 SII_RS04920 PF13692 Glycosyl transferases group 1 SII_RS04925 PF00535 Glycosyl transferase family 2 SII_RS04930 PF10066 SII_RS04930 SII_RS04935 PF00535 Glycosyl transferase family 2 SII_RS04940 PF01501 Glycosyl transferase family 8 SII_RS04950 PF04321 RmlD substrate binding domain SII_RS04960 PF00535 Glycosyl transferase family 2 SII_RS04985 PF00005 ABC transporter SII_RS04990 PF00512 His Kinase A (phospho-acceptor) domain SII_RS04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS04995 PF00072 Response regulator receiver domain SII_RS04995 PF00486 Transcriptional regulatory protein, C terminal SII_RS05000 PF00082 Subtilase family SII_RS05010 PF05147 Lanthionine synthetase C-like protein SII_RS05015 PF00005 ABC transporter SII_RS05020 PF04738 SII_RS05020 SII_RS05020 PF14028 SII_RS05020 SII_RS05025 PF02052 SII_RS05025 SII_RS05030 PF04326 Divergent AAA domain SII_RS05040 PF01909 Nucleotidyltransferase domain SII_RS05045 PF13408 Recombinase zinc beta ribbon domain SII_RS05050 PF00239 Resolvase, N terminal domain SII_RS05050 PF07508 Recombinase SII_RS05050 PF13408 Recombinase zinc beta ribbon domain SII_RS05065 PF13346 SII_RS05065 SII_RS05070 PF00005 ABC transporter SII_RS05075 PF00392 Bacterial regulatory proteins, gntR family SII_RS05080 PF05713 SII_RS05080 SII_RS05085 PF03432 SII_RS05085 SII_RS05095 PF13443 Cro/C1-type HTH DNA-binding domain SII_RS05105 PF00271 Helicase conserved C-terminal domain SII_RS05105 PF04851 Type III restriction enzyme, res subunit SII_RS05110 PF04326 Divergent AAA domain SII_RS05115 PF04014 Antidote-toxin recognition MazE SII_RS05120 PF01131 DNA topoisomerase SII_RS05120 PF01751 Toprim domain SII_RS05125 PF14283 SII_RS05125 SII_RS05140 PF12846 AAA-like domain SII_RS05145 PF12666 SII_RS05145 SII_RS05160 PF12750 SII_RS05160 SII_RS05170 PF02534 Type IV secretory system Conjugative DNA transfer SII_RS05175 PF12687 SII_RS05175 SII_RS05190 PF05958 tRNA (Uracil-5-)-methyltransferase SII_RS05195 PF03816 Cell envelope-related transcriptional attenuator domain SII_RS05200 PF00800 Prephenate dehydratase SII_RS05205 PF01202 Shikimate kinase SII_RS05210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SII_RS05215 PF06133 Protein of unknown function (DUF964) SII_RS05220 PF02153 Prephenate dehydrogenase SII_RS05225 PF07843 SII_RS05225 SII_RS05230 PF01925 SII_RS05230 SII_RS05235 PF01264 Chorismate synthase SII_RS05240 PF01761 3-dehydroquinate synthase SII_RS05245 PF08501 Shikimate dehydrogenase substrate binding domain SII_RS05250 PF01487 Type I 3-dehydroquinase SII_RS05255 PF10672 S-adenosylmethionine-dependent methyltransferase SII_RS05260 PF00884 Sulfatase SII_RS05265 PF09659 SII_RS05265 SII_RS05270 PF01048 Phosphorylase superfamily SII_RS05275 PF01048 Phosphorylase superfamily SII_RS05280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SII_RS05285 PF01926 50S ribosome-binding GTPase SII_RS05285 PF10396 GTP-binding protein TrmE N-terminus SII_RS05285 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE SII_RS05290 PF01610 SII_RS05290 SII_RS05295 PF02517 CAAX protease self-immunity SII_RS05300 PF01183 Glycosyl hydrolases family 25 SII_RS05300 PF08481 SII_RS05300 SII_RS05305 PF00121 Triosephosphate isomerase SII_RS05310 PF00009 Elongation factor Tu GTP binding domain SII_RS05310 PF03143 Elongation factor Tu C-terminal domain SII_RS05310 PF03144 Elongation factor Tu domain 2 SII_RS05315 PF13791 SII_RS05315 SII_RS05320 PF04542 Sigma-70 region 2 SII_RS05320 PF08281 Sigma-70, region 4 SII_RS05325 PF00311 Phosphoenolpyruvate carboxylase SII_RS05330 PF01098 SII_RS05330 SII_RS05335 PF01183 Glycosyl hydrolases family 25 SII_RS05345 PF00005 ABC transporter SII_RS05350 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05350 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SII_RS05355 PF01047 MarR family SII_RS05360 PF03167 Uracil DNA glycosylase superfamily SII_RS05370 PF01546 Peptidase family M20/M25/M40 SII_RS05375 PF00881 Nitroreductase family SII_RS05380 PF01541 GIY-YIG catalytic domain SII_RS05380 PF02151 UvrB/uvrC motif SII_RS05380 PF08459 UvrC Helix-hairpin-helix N-terminal SII_RS05380 PF14520 Helix-hairpin-helix domain SII_RS05385 PF00391 PEP-utilising enzyme, mobile domain SII_RS05385 PF02896 PEP-utilising enzyme, TIM barrel domain SII_RS05385 PF05524 PEP-utilising enzyme, N-terminal SII_RS05390 PF00381 PTS HPr component phosphorylation site SII_RS05395 PF00462 Glutaredoxin SII_RS05400 PF00317 Ribonucleotide reductase, all-alpha domain SII_RS05400 PF02867 Ribonucleotide reductase, barrel domain SII_RS05400 PF08343 Ribonucleotide reductase N-terminal SII_RS05410 PF00268 Ribonucleotide reductase, small chain SII_RS05415 PF02517 CAAX protease self-immunity SII_RS05425 PF03577 SII_RS05425 SII_RS05430 PF01965 DJ-1/PfpI family SII_RS05435 PF01553 Acyltransferase SII_RS05440 PF00122 E1-E2 ATPase SII_RS05440 PF00702 haloacid dehalogenase-like hydrolase SII_RS05445 PF04018 SII_RS05445 SII_RS05450 PF04073 Aminoacyl-tRNA editing domain SII_RS05455 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS05460 PF00152 tRNA synthetases class II (D, K and N) SII_RS05460 PF01336 OB-fold nucleic acid binding domain SII_RS05465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS05470 PF12146 Putative lysophospholipase SII_RS05485 PF02384 N-6 DNA Methylase SII_RS05485 PF12161 HsdM N-terminal domain SII_RS05490 PF04229 GrpB protein SII_RS05495 PF00072 Response regulator receiver domain SII_RS05495 PF12833 Helix-turn-helix domain SII_RS05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS05500 PF06580 SII_RS05500 SII_RS05505 PF04854 SII_RS05505 SII_RS05510 PF12010 SII_RS05510 SII_RS05510 PF13416 Bacterial extracellular solute-binding protein SII_RS05515 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05520 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS05525 PF00728 Glycosyl hydrolase family 20, catalytic domain SII_RS05530 PF00480 ROK family SII_RS05535 PF01074 Glycosyl hydrolases family 38 N-terminal domain SII_RS05535 PF09261 Alpha mannosidase, middle domain SII_RS05540 PF06824 Protein of unknown function (DUF1237) SII_RS05545 PF07971 Glycosyl hydrolase family 92 SII_RS05550 PF03644 Glycosyl hydrolase family 85 SII_RS05585 PF00465 Iron-containing alcohol dehydrogenase SII_RS05590 PF00923 Transaldolase SII_RS05595 PF01228 Glycine radical SII_RS05595 PF02901 Pyruvate formate lyase SII_RS05600 PF02378 Phosphotransferase system, EIIC SII_RS05605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS05610 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS05615 PF04198 Putative sugar-binding domain SII_RS05615 PF13412 Winged helix-turn-helix DNA-binding SII_RS05620 PF00455 SII_RS05620 SII_RS05620 PF08220 DeoR-like helix-turn-helix domain SII_RS05625 PF04055 Radical SAM superfamily SII_RS05625 PF13353 4Fe-4S single cluster domain SII_RS05630 PF12850 Calcineurin-like phosphoesterase superfamily domain SII_RS05635 PF02687 SII_RS05635 SII_RS05640 PF00005 ABC transporter SII_RS05645 PF00440 Bacterial regulatory proteins, tetR family SII_RS05650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS05650 PF02824 TGS domain SII_RS05650 PF03129 Anticodon binding domain SII_RS05650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05665 PF00072 Response regulator receiver domain SII_RS05665 PF00486 Transcriptional regulatory protein, C terminal SII_RS05670 PF10282 Lactonase, 7-bladed beta-propeller SII_RS05675 PF06160 SII_RS05675 SII_RS05680 PF00204 DNA gyrase B SII_RS05680 PF00986 DNA gyrase B subunit, carboxyl terminus SII_RS05680 PF01751 Toprim domain SII_RS05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS05685 PF13419 Haloacid dehalogenase-like hydrolase SII_RS05690 PF01965 DJ-1/PfpI family SII_RS05695 PF01098 SII_RS05695 SII_RS05700 PF03601 SII_RS05700 SII_RS05705 PF00270 DEAD/DEAH box helicase SII_RS05705 PF00929 Exonuclease SII_RS05705 PF13307 Helicase C-terminal domain SII_RS05710 PF00753 Metallo-beta-lactamase superfamily SII_RS05715 PF02687 SII_RS05715 SII_RS05720 PF00005 ABC transporter SII_RS05725 PF00472 RF-1 domain SII_RS05725 PF03462 PCRF domain SII_RS05730 PF00122 E1-E2 ATPase SII_RS05730 PF00689 Cation transporting ATPase, C-terminus SII_RS05730 PF00690 Cation transporter/ATPase, N-terminus SII_RS05730 PF00702 haloacid dehalogenase-like hydrolase SII_RS05735 PF09148 Domain of unknown function (DUF1934) SII_RS05740 PF01966 HD domain SII_RS05745 PF08282 haloacid dehalogenase-like hydrolase SII_RS05750 PF02388 FemAB family SII_RS05755 PF02388 FemAB family SII_RS05760 PF00005 ABC transporter SII_RS05760 PF00664 ABC transporter transmembrane region SII_RS05765 PF01411 tRNA synthetases class II (A) SII_RS05765 PF02272 DHHA1 domain SII_RS05765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05770 PF04525 Tubby C 2 SII_RS05775 PF13145 PPIC-type PPIASE domain SII_RS05780 PF01596 O-methyltransferase SII_RS05785 PF01432 Peptidase family M3 SII_RS05785 PF08439 Oligopeptidase F SII_RS05790 PF06054 SII_RS05790 SII_RS05795 PF02378 Phosphotransferase system, EIIC SII_RS05805 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SII_RS05810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS05810 PF00874 PRD domain SII_RS05810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS05810 PF05043 Mga helix-turn-helix domain SII_RS05810 PF08279 HTH domain SII_RS05815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS05820 PF04193 PQ loop repeat SII_RS05825 PF00232 Glycosyl hydrolase family 1 SII_RS05830 PF07690 Major Facilitator Superfamily SII_RS05835 PF00768 D-alanyl-D-alanine carboxypeptidase SII_RS05835 PF09211 Domain of unknown function (DUF1958) SII_RS05840 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SII_RS05845 PF02547 Queuosine biosynthesis protein SII_RS05850 PF01316 Arginine repressor, DNA binding domain SII_RS05850 PF02863 Arginine repressor, C-terminal domain SII_RS05855 PF01546 Peptidase family M20/M25/M40 SII_RS05860 PF03606 SII_RS05860 SII_RS05865 PF00696 Amino acid kinase family SII_RS05870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SII_RS05870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SII_RS05875 PF02274 Amidinotransferase SII_RS05880 PF00027 Cyclic nucleotide-binding domain SII_RS05880 PF13545 Crp-like helix-turn-helix domain SII_RS05885 PF13354 Beta-lactamase enzyme family SII_RS05895 PF10439 SII_RS05895 SII_RS05910 PF08951 Enterocin A Immunity SII_RS05915 PF01721 Class II bacteriocin SII_RS05920 PF10439 SII_RS05920 SII_RS05930 PF10439 SII_RS05930 SII_RS05935 PF02517 CAAX protease self-immunity SII_RS05940 PF00072 Response regulator receiver domain SII_RS05940 PF04397 LytTr DNA-binding domain SII_RS05945 PF14501 GHKL domain SII_RS05950 PF03047 SII_RS05950 SII_RS05955 PF13437 HlyD family secretion protein SII_RS05960 PF00005 ABC transporter SII_RS05960 PF00664 ABC transporter transmembrane region SII_RS05960 PF03412 Peptidase C39 family SII_RS05970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SII_RS05970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SII_RS05975 PF06144 DNA polymerase III, delta subunit SII_RS05980 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SII_RS05980 PF04851 Type III restriction enzyme, res subunit SII_RS05980 PF12008 Type I restriction and modification enzyme - subunit R C terminal SII_RS05985 PF01420 Type I restriction modification DNA specificity domain SII_RS05990 PF01420 Type I restriction modification DNA specificity domain SII_RS05995 PF13310 SII_RS05995 SII_RS06000 PF02384 N-6 DNA Methylase SII_RS06000 PF12161 HsdM N-terminal domain SII_RS06005 PF13509 S1 domain SII_RS06010 PF01765 Ribosome recycling factor SII_RS06015 PF00696 Amino acid kinase family SII_RS06020 PF00687 Ribosomal protein L1p/L10e family SII_RS06025 PF00298 Ribosomal protein L11, RNA binding domain SII_RS06025 PF03946 Ribosomal protein L11, N-terminal domain SII_RS06030 PF11877 SII_RS06030 SII_RS06035 PF00122 E1-E2 ATPase SII_RS06035 PF00690 Cation transporter/ATPase, N-terminus SII_RS06035 PF00702 haloacid dehalogenase-like hydrolase SII_RS06040 PF01580 FtsK/SpoIIIE family SII_RS06040 PF09397 Ftsk gamma domain SII_RS06045 PF04024 SII_RS06045 SII_RS06050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SII_RS06055 PF17032 SII_RS06055 SII_RS06060 PF00005 ABC transporter SII_RS06060 PF12848 ABC transporter SII_RS06065 PF05987 SII_RS06065 SII_RS06070 PF01048 Phosphorylase superfamily SII_RS06080 PF00293 NUDIX domain SII_RS06085 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS06085 PF12804 MobA-like NTP transferase domain SII_RS06085 PF14602 Hexapeptide repeat of succinyl-transferase SII_RS06090 PF04266 ASCH domain SII_RS06105 PF12746 GNAT acetyltransferase SII_RS06110 PF13561 Enoyl-(Acyl carrier protein) reductase SII_RS06115 PF11195 SII_RS06115 SII_RS06120 PF00313 'Cold-shock' DNA-binding domain SII_RS06125 PF02502 Ribose/Galactose Isomerase SII_RS06130 PF13302 Acetyltransferase (GNAT) domain SII_RS06135 PF13508 Acetyltransferase (GNAT) domain SII_RS06140 PF13520 Amino acid permease SII_RS06145 PF02687 SII_RS06145 SII_RS06150 PF00005 ABC transporter SII_RS06160 PF11457 SII_RS06160 SII_RS06165 PF04397 LytTr DNA-binding domain SII_RS06170 PF01061 SII_RS06170 SII_RS06175 PF00005 ABC transporter SII_RS06180 PF02687 SII_RS06180 SII_RS06185 PF00005 ABC transporter SII_RS06190 PF05857 SII_RS06190 SII_RS06195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS06200 PF00072 Response regulator receiver domain SII_RS06200 PF00486 Transcriptional regulatory protein, C terminal SII_RS06205 PF11187 Protein of unknown function (DUF2974) SII_RS06210 PF01588 Putative tRNA binding domain SII_RS06210 PF09334 tRNA synthetases class I (M) SII_RS06215 PF03083 Sugar efflux transporter for intercellular exchange SII_RS06220 PF04239 Protein of unknown function (DUF421) SII_RS06225 PF11694 SII_RS06225 SII_RS06230 PF07853 SII_RS06230 SII_RS06230 PF13630 SII_RS06230 SII_RS06235 PF12840 Helix-turn-helix domain SII_RS06240 PF02517 CAAX protease self-immunity SII_RS06250 PF03372 Endonuclease/Exonuclease/phosphatase family SII_RS06255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SII_RS06260 PF00633 Helix-hairpin-helix motif SII_RS06260 PF00730 HhH-GPD superfamily base excision DNA repair protein SII_RS06265 PF00462 Glutaredoxin SII_RS06265 PF03960 ArsC family SII_RS06270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SII_RS06275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SII_RS06280 PF06156 SII_RS06280 SII_RS06285 PF13177 DNA polymerase III, delta subunit SII_RS06290 PF02223 Thymidylate kinase SII_RS06295 PF02588 SII_RS06295 SII_RS06295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SII_RS06300 PF00571 CBS domain SII_RS06305 PF00005 ABC transporter SII_RS06310 PF00005 ABC transporter SII_RS06310 PF12399 Branched-chain amino acid ATP-binding cassette transporter SII_RS06315 PF02653 SII_RS06315 SII_RS06320 PF02653 SII_RS06320 SII_RS06325 PF13458 Periplasmic binding protein SII_RS06335 PF00574 Clp protease SII_RS06340 PF14681 Uracil phosphoribosyltransferase SII_RS06345 PF00122 E1-E2 ATPase SII_RS06345 PF00689 Cation transporting ATPase, C-terminus SII_RS06345 PF00690 Cation transporter/ATPase, N-terminus SII_RS06345 PF00702 haloacid dehalogenase-like hydrolase SII_RS06350 PF00155 Aminotransferase class I and II SII_RS06355 PF01053 Cys/Met metabolism PLP-dependent enzyme SII_RS06360 PF01943 SII_RS06360 SII_RS06360 PF14667 Polysaccharide biosynthesis C-terminal domain SII_RS06365 PF02875 Mur ligase family, glutamate ligase domain SII_RS06365 PF08245 Mur ligase middle domain SII_RS06370 PF02517 CAAX protease self-immunity SII_RS06375 PF08820 SII_RS06375 SII_RS06380 PF05708 Orthopoxvirus protein of unknown function (DUF830) SII_RS06385 PF01368 DHH family SII_RS06385 PF02833 DHHA2 domain SII_RS06390 PF04055 Radical SAM superfamily SII_RS06390 PF13353 4Fe-4S single cluster domain SII_RS06395 PF03372 Endonuclease/Exonuclease/phosphatase family SII_RS06400 PF00128 Alpha amylase, catalytic domain SII_RS06400 PF16657 SII_RS06400 SII_RS06405 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS06405 PF00367 phosphotransferase system, EIIB SII_RS06405 PF02378 Phosphotransferase system, EIIC SII_RS06410 PF00392 Bacterial regulatory proteins, gntR family SII_RS06410 PF07702 UTRA domain SII_RS06415 PF00571 CBS domain SII_RS06415 PF01595 SII_RS06415 SII_RS06415 PF03471 Transporter associated domain SII_RS06420 PF01293 Phosphoenolpyruvate carboxykinase SII_RS06425 PF01594 SII_RS06425 SII_RS06430 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS06430 PF06827 Zinc finger found in FPG and IleRS SII_RS06430 PF08264 Anticodon-binding domain of tRNA SII_RS06435 PF05103 DivIVA protein SII_RS06440 PF01479 S4 domain SII_RS06445 PF02325 SII_RS06445 SII_RS06450 PF04472 Protein of unknown function (DUF552) SII_RS06455 PF01168 Alanine racemase, N-terminal domain SII_RS06460 PF00091 Tubulin/FtsZ family, GTPase domain SII_RS06460 PF12327 FtsZ family, C-terminal domain SII_RS06465 PF02491 SHS2 domain inserted in FTSA SII_RS06465 PF11983 SII_RS06465 SII_RS06465 PF14450 Cell division protein FtsA SII_RS06470 PF03799 Cell division protein FtsQ SII_RS06470 PF08478 POTRA domain, FtsQ-type SII_RS06475 PF03033 Glycosyltransferase family 28 N-terminal domain SII_RS06475 PF04101 Glycosyltransferase family 28 C-terminal domain SII_RS06480 PF02875 Mur ligase family, glutamate ligase domain SII_RS06480 PF08245 Mur ligase middle domain SII_RS06485 PF11364 SII_RS06485 SII_RS06490 PF00009 Elongation factor Tu GTP binding domain SII_RS06490 PF00679 Elongation factor G C-terminus SII_RS06490 PF03144 Elongation factor Tu domain 2 SII_RS06490 PF14492 Elongation Factor G, domain II SII_RS06495 PF00849 RNA pseudouridylate synthase SII_RS06500 PF00581 Rhodanese-like domain SII_RS06505 PF06014 Bacterial protein of unknown function (DUF910) SII_RS06510 PF00210 Ferritin-like domain SII_RS06515 PF06750 SII_RS06515 SII_RS06520 PF04892 SII_RS06520 SII_RS06525 PF04055 Radical SAM superfamily SII_RS06525 PF13394 4Fe-4S single cluster domain SII_RS06530 PF06265 Protein of unknown function (DUF1027) SII_RS06535 PF05362 Lon protease (S16) C-terminal proteolytic domain SII_RS06535 PF13180 PDZ domain SII_RS06540 PF01467 Cytidylyltransferase SII_RS06545 PF03602 Conserved hypothetical protein 95 SII_RS06550 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SII_RS06550 PF16321 SII_RS06550 SII_RS06560 PF00270 DEAD/DEAH box helicase SII_RS06560 PF00271 Helicase conserved C-terminal domain SII_RS06565 PF01205 Uncharacterized protein family UPF0029 SII_RS06565 PF09186 Domain of unknown function (DUF1949) SII_RS06570 PF00291 Pyridoxal-phosphate dependent enzyme SII_RS06600 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS06600 PF08264 Anticodon-binding domain of tRNA SII_RS06600 PF10458 Valyl tRNA synthetase tRNA binding arm SII_RS06610 PF13302 Acetyltransferase (GNAT) domain SII_RS06625 PF08930 Domain of unknown function (DUF1912) SII_RS06630 PF01814 Hemerythrin HHE cation binding domain SII_RS06630 PF04282 SII_RS06630 SII_RS06630 PF13596 PAS domain SII_RS06635 PF08984 Domain of unknown function (DUF1858) SII_RS06645 PF01938 TRAM domain SII_RS06645 PF05958 tRNA (Uracil-5-)-methyltransferase SII_RS06650 PF01636 Phosphotransferase enzyme family SII_RS06655 PF02631 RecX family SII_RS06660 PF04167 Protein of unknown function (DUF402) SII_RS06665 PF06124 Staphylococcal protein of unknown function (DUF960) SII_RS06670 PF00575 S1 RNA binding domain SII_RS06675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SII_RS06675 PF08282 haloacid dehalogenase-like hydrolase SII_RS06680 PF00072 Response regulator receiver domain SII_RS06680 PF00196 Bacterial regulatory proteins, luxR family SII_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS06685 PF07730 Histidine kinase SII_RS06690 PF09922 Cell wall-active antibiotics response protein (DUF2154) SII_RS06695 PF00069 Protein kinase domain SII_RS06695 PF03793 PASTA domain SII_RS06700 PF13672 Protein phosphatase 2C SII_RS06705 PF01029 NusB family SII_RS06705 PF01189 NOL1/NOP2/sun family SII_RS06710 PF00551 Formyl transferase SII_RS06710 PF02911 Formyl transferase, C-terminal domain SII_RS06715 PF00271 Helicase conserved C-terminal domain SII_RS06715 PF04851 Type III restriction enzyme, res subunit SII_RS06720 PF01192 RNA polymerase Rpb6 SII_RS06725 PF00625 Guanylate kinase SII_RS06730 PF00013 KH domain SII_RS06730 PF01966 HD domain SII_RS06730 PF12072 SII_RS06730 SII_RS06735 PF02664 S-Ribosylhomocysteinase (LuxS) SII_RS06740 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS06740 PF13192 Thioredoxin domain SII_RS06745 PF00578 AhpC/TSA family SII_RS06745 PF10417 C-terminal domain of 1-Cys peroxiredoxin SII_RS06755 PF01170 Putative RNA methylase family UPF0020 SII_RS06755 PF02926 THUMP domain SII_RS06760 PF05103 DivIVA protein SII_RS06765 PF06908 Protein of unknown function (DUF1273) SII_RS06770 PF03838 Recombination protein U SII_RS06775 PF00905 Penicillin binding protein transpeptidase domain SII_RS06775 PF00912 Transglycosylase SII_RS06780 PF03051 Peptidase C1-like family SII_RS06785 PF02540 NAD synthase SII_RS06790 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SII_RS06805 PF00324 Amino acid permease SII_RS06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase SII_RS06815 PF13268 SII_RS06815 SII_RS06820 PF00005 ABC transporter SII_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS06830 PF00270 DEAD/DEAH box helicase SII_RS06830 PF00271 Helicase conserved C-terminal domain SII_RS06835 PF00768 D-alanyl-D-alanine carboxypeptidase SII_RS06835 PF07943 Penicillin-binding protein 5, C-terminal domain SII_RS06840 PF01592 NifU-like N terminal domain SII_RS06845 PF00266 Aminotransferase class-V SII_RS06850 PF01458 Uncharacterized protein family (UPF0051) SII_RS06855 PF00005 ABC transporter SII_RS06860 PF00953 Glycosyl transferase family 4 SII_RS06865 PF05389 Negative regulator of genetic competence (MecA) SII_RS06870 PF02673 SII_RS06870 SII_RS06875 PF09972 SII_RS06875 SII_RS06880 PF00497 Bacterial extracellular solute-binding proteins, family 3 SII_RS06880 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS06885 PF00005 ABC transporter SII_RS06895 PF01145 SPFH domain / Band 7 family SII_RS06900 PF00072 Response regulator receiver domain SII_RS06900 PF00196 Bacterial regulatory proteins, luxR family SII_RS06905 PF07730 Histidine kinase SII_RS06910 PF01061 SII_RS06910 SII_RS06915 PF00005 ABC transporter SII_RS06920 PF02734 DAK2 domain SII_RS06920 PF13684 Dihydroxyacetone kinase family SII_RS06925 PF03780 SII_RS06925 SII_RS06930 PF00830 Ribosomal L28 family SII_RS06940 PF04397 LytTr DNA-binding domain SII_RS06950 PF01116 Fructose-bisphosphate aldolase class-II SII_RS06960 PF14526 Integron-associated effector binding protein SII_RS06965 PF00117 Glutamine amidotransferase class-I SII_RS06975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS06980 PF00953 Glycosyl transferase family 4 SII_RS06980 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SII_RS06985 PF00905 Penicillin binding protein transpeptidase domain SII_RS06985 PF03717 Penicillin-binding Protein dimerisation domain SII_RS06985 PF03793 PASTA domain SII_RS06995 PF01795 MraW methylase family SII_RS07000 PF01381 Helix-turn-helix SII_RS07010 PF02386 Cation transport protein SII_RS07015 PF02254 TrkA-N domain SII_RS07020 PF05979 Bacterial protein of unknown function (DUF896) SII_RS07025 PF02092 SII_RS07025 SII_RS07030 PF02091 Glycyl-tRNA synthetase alpha subunit SII_RS07065 PF01979 Amidohydrolase family SII_RS07070 PF01895 PhoU domain SII_RS07070 PF02690 SII_RS07070 SII_RS07075 PF02033 Ribosome-binding factor A SII_RS07080 PF00009 Elongation factor Tu GTP binding domain SII_RS07080 PF04760 Translation initiation factor IF-2, N-terminal region SII_RS07080 PF11987 Translation-initiation factor 2 SII_RS07085 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SII_RS07090 PF04296 Protein of unknown function (DUF448) SII_RS07095 PF08529 NusA N-terminal domain SII_RS07095 PF13184 NusA-like KH domain SII_RS07100 PF02576 Uncharacterised BCR, YhbC family COG0779 SII_RS07105 PF01988 SII_RS07105 SII_RS07110 PF02390 Putative methyltransferase SII_RS07115 PF01636 Phosphotransferase enzyme family SII_RS07120 PF05975 SII_RS07120 SII_RS07125 PF00005 ABC transporter SII_RS07130 PF01230 HIT domain SII_RS07140 PF03816 Cell envelope-related transcriptional attenuator domain SII_RS07145 PF00583 Acetyltransferase (GNAT) family SII_RS07150 PF02367 Uncharacterised P-loop hydrolase UPF0079 SII_RS07155 PF00860 Permease family SII_RS07160 PF07099 SII_RS07160 SII_RS07165 PF08282 haloacid dehalogenase-like hydrolase SII_RS07170 PF00107 Zinc-binding dehydrogenase SII_RS07170 PF08240 Alcohol dehydrogenase GroES-like domain SII_RS07175 PF03610 PTS system fructose IIA component SII_RS07175 PF03830 PTS system sorbose subfamily IIB component SII_RS07180 PF03609 SII_RS07180 SII_RS07185 PF03613 SII_RS07185 SII_RS07190 PF06115 SII_RS07190 SII_RS07195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS07195 PF02403 Seryl-tRNA synthetase N-terminal domain SII_RS07200 PF09335 SII_RS07200 SII_RS07205 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SII_RS07210 PF01039 Carboxyl transferase domain SII_RS07215 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SII_RS07215 PF02785 Biotin carboxylase C-terminal domain SII_RS07215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SII_RS07220 PF07977 FabA-like domain SII_RS07225 PF00364 Biotin-requiring enzyme SII_RS07230 PF00109 Beta-ketoacyl synthase, N-terminal domain SII_RS07230 PF02801 Beta-ketoacyl synthase, C-terminal domain SII_RS07235 PF13561 Enoyl-(Acyl carrier protein) reductase SII_RS07240 PF00698 Acyl transferase domain SII_RS07245 PF03060 Nitronate monooxygenase SII_RS07250 PF00550 Phosphopantetheine attachment site SII_RS07255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SII_RS07255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SII_RS07260 PF01047 MarR family SII_RS07265 PF00378 Enoyl-CoA hydratase/isomerase family SII_RS07270 PF00696 Amino acid kinase family SII_RS07270 PF13840 ACT domain SII_RS07300 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07305 PF00005 ABC transporter SII_RS07305 PF09383 NIL domain SII_RS07310 PF01546 Peptidase family M20/M25/M40 SII_RS07310 PF07687 Peptidase dimerisation domain SII_RS07315 PF03180 NLPA lipoprotein SII_RS07320 PF00497 Bacterial extracellular solute-binding proteins, family 3 SII_RS07325 PF11611 Domain of unknown function (DUF4352) SII_RS07325 PF17118 SII_RS07325 SII_RS07330 PF01709 Transcriptional regulator SII_RS07335 PF05636 HIGH Nucleotidyl Transferase SII_RS07340 PF13649 Methyltransferase domain SII_RS07350 PF02410 Oligomerisation domain SII_RS07355 PF00857 Isochorismatase family SII_RS07360 PF01966 HD domain SII_RS07365 PF01467 Cytidylyltransferase SII_RS07370 PF01985 CRS1 / YhbY (CRM) domain SII_RS07375 PF01926 50S ribosome-binding GTPase SII_RS07380 PF13419 Haloacid dehalogenase-like hydrolase SII_RS07385 PF09335 SII_RS07385 SII_RS07390 PF00892 EamA-like transporter family SII_RS07395 PF00107 Zinc-binding dehydrogenase SII_RS07395 PF08240 Alcohol dehydrogenase GroES-like domain SII_RS07400 PF02637 GatB domain SII_RS07400 PF02934 GatB/GatE catalytic domain SII_RS07405 PF01425 Amidase SII_RS07410 PF02686 Glu-tRNAGln amidotransferase C subunit SII_RS07415 PF00152 tRNA synthetases class II (D, K and N) SII_RS07415 PF01336 OB-fold nucleic acid binding domain SII_RS07415 PF02938 GAD domain SII_RS07420 PF00857 Isochorismatase family SII_RS07425 PF06018 CodY GAF-like domain SII_RS07425 PF08222 CodY helix-turn-helix domain SII_RS07430 PF00155 Aminotransferase class I and II SII_RS07435 PF00582 Universal stress protein family SII_RS07440 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SII_RS07440 PF08282 haloacid dehalogenase-like hydrolase SII_RS07445 PF00710 Asparaginase SII_RS07450 PF00270 DEAD/DEAH box helicase SII_RS07450 PF00271 Helicase conserved C-terminal domain SII_RS07450 PF17191 SII_RS07450 SII_RS07455 PF00842 Alanine racemase, C-terminal domain SII_RS07455 PF01168 Alanine racemase, N-terminal domain SII_RS07460 PF01648 4'-phosphopantetheinyl transferase superfamily SII_RS07465 PF00793 DAHP synthetase I family SII_RS07470 PF01043 SecA preprotein cross-linking domain SII_RS07470 PF02810 SEC-C motif SII_RS07470 PF07516 SecA Wing and Scaffold domain SII_RS07470 PF07517 SecA DEAD-like domain SII_RS07475 PF13520 Amino acid permease SII_RS07490 PF04740 SII_RS07490 SII_RS07505 PF01238 Phosphomannose isomerase type I SII_RS07510 PF00392 Bacterial regulatory proteins, gntR family SII_RS07510 PF07702 UTRA domain SII_RS07515 PF02378 Phosphotransferase system, EIIC SII_RS07520 PF00232 Glycosyl hydrolase family 1 SII_RS07525 PF07883 Cupin domain SII_RS07530 PF00005 ABC transporter SII_RS07530 PF00664 ABC transporter transmembrane region SII_RS07535 PF00005 ABC transporter SII_RS07535 PF00664 ABC transporter transmembrane region SII_RS07540 PF12802 MarR family SII_RS07545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SII_RS07550 PF01327 Polypeptide deformylase SII_RS07555 PF00480 ROK family SII_RS07560 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SII_RS07560 PF00367 phosphotransferase system, EIIB SII_RS07560 PF02378 Phosphotransferase system, EIIC SII_RS07565 PF00251 Glycosyl hydrolases family 32 N-terminal domain SII_RS07565 PF08244 Glycosyl hydrolases family 32 C terminal SII_RS07570 PF00356 Bacterial regulatory proteins, lacI family SII_RS07570 PF13377 Periplasmic binding protein-like domain SII_RS07575 PF08282 haloacid dehalogenase-like hydrolase SII_RS07580 PF00005 ABC transporter SII_RS07580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SII_RS07585 PF00005 ABC transporter SII_RS07585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SII_RS07590 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07590 PF12911 SII_RS07590 SII_RS07595 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS07600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS07605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SII_RS07610 PF03483 B3/4 domain SII_RS07615 PF00117 Glutamine amidotransferase class-I SII_RS07615 PF06418 CTP synthase N-terminus SII_RS07620 PF05066 HB1, ASXL, restriction endonuclease HTH domain SII_RS07625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SII_RS07625 PF05697 Bacterial trigger factor protein (TF) SII_RS07625 PF05698 Bacterial trigger factor protein (TF) C-terminus SII_RS07630 PF04260 Protein of unknown function (DUF436) SII_RS07635 PF07155 ECF-type riboflavin transporter, S component SII_RS07640 PF08543 Phosphomethylpyrimidine kinase SII_RS07645 PF01416 tRNA pseudouridine synthase SII_RS07650 PF00293 NUDIX domain SII_RS07655 PF00226 DnaJ domain SII_RS07655 PF00684 DnaJ central domain SII_RS07655 PF01556 DnaJ C terminal domain SII_RS07660 PF00012 Hsp70 protein SII_RS07665 PF01025 GrpE SII_RS07670 PF01628 HrcA protein C terminal domain SII_RS07670 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SII_RS07675 PF00923 Transaldolase SII_RS07680 PF03611 SII_RS07680 SII_RS07685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS07690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS07690 PF00874 PRD domain SII_RS07695 PF00300 Histidine phosphatase superfamily (branch 1) SII_RS07705 PF05167 Uncharacterised ACR (DUF711) SII_RS07710 PF13740 ACT domain SII_RS07715 PF00356 Bacterial regulatory proteins, lacI family SII_RS07715 PF13407 Periplasmic binding protein domain SII_RS07720 PF07940 Heparinase II/III-like protein SII_RS07720 PF16889 SII_RS07720 SII_RS07725 PF02699 Preprotein translocase subunit SII_RS07730 PF03613 SII_RS07730 SII_RS07735 PF03609 SII_RS07735 SII_RS07740 PF03830 PTS system sorbose subfamily IIB component SII_RS07745 PF07470 Glycosyl Hydrolase Family 88 SII_RS07750 PF03610 PTS system fructose IIA component SII_RS07755 PF13561 Enoyl-(Acyl carrier protein) reductase SII_RS07760 PF02502 Ribose/Galactose Isomerase SII_RS07760 PF12408 Ribose-5-phosphate isomerase SII_RS07765 PF00294 pfkB family carbohydrate kinase SII_RS07770 PF01081 KDPG and KHG aldolase SII_RS07775 PF05737 Collagen binding domain SII_RS07775 PF05738 Cna protein B-type domain SII_RS07780 PF00746 SII_RS07780 SII_RS07780 PF02278 Polysaccharide lyase family 8, super-sandwich domain SII_RS07780 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SII_RS07780 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SII_RS07785 PF00255 Glutathione peroxidase SII_RS07790 PF13302 Acetyltransferase (GNAT) domain SII_RS07795 PF05738 Cna protein B-type domain SII_RS07800 PF05973 SII_RS07800 SII_RS07805 PF01381 Helix-turn-helix SII_RS07810 PF12730 SII_RS07810 SII_RS07815 PF00005 ABC transporter SII_RS07820 PF00005 ABC transporter SII_RS07820 PF00664 ABC transporter transmembrane region SII_RS07820 PF03412 Peptidase C39 family SII_RS07825 PF14367 SII_RS07825 SII_RS07830 PF06114 Domain of unknown function (DUF955) SII_RS07835 PF04087 SII_RS07835 SII_RS07845 PF01610 SII_RS07845 SII_RS07850 PF00122 E1-E2 ATPase SII_RS07850 PF00702 haloacid dehalogenase-like hydrolase SII_RS07860 PF00872 SII_RS07860 SII_RS07875 PF02661 Fic/DOC family SII_RS07880 PF00005 ABC transporter SII_RS07880 PF00664 ABC transporter transmembrane region SII_RS07900 PF13630 SII_RS07900 SII_RS07910 PF02486 SII_RS07910 SII_RS07915 PF12728 Helix-turn-helix domain SII_RS07920 PF00589 Phage integrase family SII_RS07925 PF00380 Ribosomal protein S9/S16 SII_RS07930 PF00572 Ribosomal protein L13 SII_RS07935 PF02645 Uncharacterised protein, DegV family COG1307 SII_RS07940 PF00588 SpoU rRNA Methylase family SII_RS07940 PF08032 RNA 2'-O ribose methyltransferase substrate binding SII_RS07945 PF00005 ABC transporter SII_RS07945 PF08402 TOBE domain SII_RS07950 PF13556 PucR C-terminal helix-turn-helix domain SII_RS07955 PF00636 Ribonuclease III domain SII_RS07960 PF01406 tRNA synthetases class I (C) catalytic domain SII_RS07960 PF09190 DALR domain SII_RS07965 PF01048 Phosphorylase superfamily SII_RS07970 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS07975 PF00013 KH domain SII_RS07975 PF00575 S1 RNA binding domain SII_RS07975 PF01138 3' exoribonuclease family, domain 1 SII_RS07975 PF03725 3' exoribonuclease family, domain 2 SII_RS07975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SII_RS07980 PF01432 Peptidase family M3 SII_RS07980 PF08439 Oligopeptidase F SII_RS07990 PF00312 Ribosomal protein S15 SII_RS07995 PF00849 RNA pseudouridylate synthase SII_RS07995 PF01479 S4 domain SII_RS08000 PF07690 Major Facilitator Superfamily SII_RS08005 PF16116 SII_RS08005 SII_RS08010 PF16316 SII_RS08010 SII_RS08015 PF09359 VTC domain SII_RS08020 PF08757 SII_RS08020 SII_RS08025 PF16933 SII_RS08025 SII_RS08030 PF00534 Glycosyl transferases group 1 SII_RS08030 PF11997 SII_RS08030 SII_RS08035 PF09960 SII_RS08035 SII_RS08050 PF01327 Polypeptide deformylase SII_RS08055 PF04226 SII_RS08055 SII_RS08060 PF02073 Thermophilic metalloprotease (M29) SII_RS08070 PF00929 Exonuclease SII_RS08070 PF02811 PHP domain SII_RS08070 PF07733 Bacterial DNA polymerase III alpha subunit SII_RS08070 PF11490 SII_RS08070 SII_RS08070 PF14480 SII_RS08070 SII_RS08075 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SII_RS08080 PF00128 Alpha amylase, catalytic domain SII_RS08080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS08080 PF03714 Bacterial pullanase-associated domain SII_RS08085 PF00133 tRNA synthetases class I (I, L, M and V) SII_RS08085 PF08264 Anticodon-binding domain of tRNA SII_RS08085 PF09334 tRNA synthetases class I (M) SII_RS08085 PF13603 Leucyl-tRNA synthetase, Domain 2 SII_RS08090 PF01431 Peptidase family M13 SII_RS08090 PF05649 Peptidase family M13 SII_RS08095 PF00005 ABC transporter SII_RS08100 PF00950 SII_RS08100 SII_RS08105 PF01297 Periplasmic solute binding protein family SII_RS08110 PF01325 Iron dependent repressor, N-terminal DNA binding domain SII_RS08110 PF02742 Iron dependent repressor, metal binding and dimerisation domain SII_RS08110 PF04023 FeoA domain SII_RS08115 PF02580 D-Tyr-tRNA(Tyr) deacylase SII_RS08120 PF02824 TGS domain SII_RS08120 PF04607 Region found in RelA / SpoT proteins SII_RS08120 PF13291 ACT domain SII_RS08120 PF13328 HD domain SII_RS08125 PF04452 RNA methyltransferase SII_RS08130 PF06325 Ribosomal protein L11 methyltransferase (PrmA) SII_RS08135 PF13673 Acetyltransferase (GNAT) domain SII_RS08140 PF00293 NUDIX domain SII_RS08145 PF11217 Protein of unknown function (DUF3013) SII_RS08150 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS08150 PF12002 MgsA AAA+ ATPase C terminal SII_RS08150 PF16193 SII_RS08150 SII_RS08165 PF02677 SII_RS08165 SII_RS08170 PF00118 TCP-1/cpn60 chaperonin family SII_RS08175 PF00166 Chaperonin 10 Kd subunit SII_RS08185 PF03613 SII_RS08185 SII_RS08190 PF03609 SII_RS08190 SII_RS08195 PF03830 PTS system sorbose subfamily IIB component SII_RS08200 PF03610 PTS system fructose IIA component SII_RS08205 PF13416 Bacterial extracellular solute-binding protein SII_RS08210 PF00072 Response regulator receiver domain SII_RS08210 PF00196 Bacterial regulatory proteins, luxR family SII_RS08215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS08215 PF07730 Histidine kinase SII_RS08220 PF13407 Periplasmic binding protein domain SII_RS08225 PF00436 Single-strand binding protein family SII_RS08230 PF01588 Putative tRNA binding domain SII_RS08230 PF14794 Domain of unknown function (DUF4479) SII_RS08235 PF00085 Thioredoxin SII_RS08240 PF15513 Domain of unknown function (DUF4651) SII_RS08245 PF05343 M42 glutamyl aminopeptidase SII_RS08250 PF08797 HIRAN domain SII_RS08255 PF12822 Protein of unknown function (DUF3816) SII_RS08260 PF02875 Mur ligase family, glutamate ligase domain SII_RS08260 PF08245 Mur ligase middle domain SII_RS08270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SII_RS08270 PF03129 Anticodon binding domain SII_RS08270 PF04073 Aminoacyl-tRNA editing domain SII_RS08275 PF02163 Peptidase family M50 SII_RS08280 PF01148 Cytidylyltransferase family SII_RS08285 PF01255 Putative undecaprenyl diphosphate synthase SII_RS08290 PF02699 Preprotein translocase subunit SII_RS08295 PF00456 Transketolase, thiamine diphosphate binding domain SII_RS08295 PF02779 Transketolase, pyrimidine binding domain SII_RS08295 PF02780 Transketolase, C-terminal domain SII_RS08300 PF13483 Beta-lactamase superfamily domain SII_RS08305 PF00874 PRD domain SII_RS08305 PF08279 HTH domain SII_RS08310 PF00596 Class II Aldolase and Adducin N-terminal domain SII_RS08315 PF01261 Xylose isomerase-like TIM barrel SII_RS08320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS08325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SII_RS08330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SII_RS08335 PF03611 SII_RS08335 SII_RS08340 PF00004 ATPase family associated with various cellular activities (AAA) SII_RS08340 PF07724 AAA domain (Cdc48 subfamily) SII_RS08340 PF10431 C-terminal, D2-small domain, of ClpB protein SII_RS08355 PF11187 Protein of unknown function (DUF2974) SII_RS08360 PF07006 SII_RS08360 SII_RS08370 PF07006 SII_RS08370 SII_RS08375 PF07006 SII_RS08375 SII_RS08385 PF07006 SII_RS08385 SII_RS08390 PF01380 SIS domain SII_RS08390 PF13522 Glutamine amidotransferase domain SII_RS08395 PF00871 Acetokinase family SII_RS08400 PF02384 N-6 DNA Methylase SII_RS08410 PF15980 SII_RS08410 SII_RS08415 PF11773 SII_RS08415 SII_RS08420 PF13544 SII_RS08420 SII_RS08425 PF00482 Type II secretion system (T2SS), protein F SII_RS08430 PF00437 Type II/IV secretion system protein SII_RS08435 PF06279 SII_RS08435 SII_RS08440 PF00120 Glutamine synthetase, catalytic domain SII_RS08440 PF03951 Glutamine synthetase, beta-Grasp domain SII_RS08445 PF13411 MerR HTH family regulatory protein SII_RS08450 PF06081 SII_RS08450 SII_RS08455 PF01476 LysM domain SII_RS08455 PF05257 CHAP domain SII_RS08460 PF00746 SII_RS08460 SII_RS08460 PF06696 Streptococcal surface antigen repeat SII_RS08460 PF08363 Glucan-binding protein C SII_RS08460 PF16364 SII_RS08460 SII_RS08465 PF00162 Phosphoglycerate kinase SII_RS08470 PF00623 RNA polymerase Rpb1, domain 2 SII_RS08470 PF04983 RNA polymerase Rpb1, domain 3 SII_RS08470 PF04997 RNA polymerase Rpb1, domain 1 SII_RS08470 PF04998 RNA polymerase Rpb1, domain 5 SII_RS08470 PF05000 RNA polymerase Rpb1, domain 4 SII_RS08475 PF00562 RNA polymerase Rpb2, domain 6 SII_RS08475 PF04560 RNA polymerase Rpb2, domain 7 SII_RS08475 PF04561 RNA polymerase Rpb2, domain 2 SII_RS08475 PF04563 RNA polymerase beta subunit SII_RS08475 PF04565 RNA polymerase Rpb2, domain 3 SII_RS08475 PF10385 RNA polymerase beta subunit external 1 domain SII_RS08480 PF00905 Penicillin binding protein transpeptidase domain SII_RS08480 PF00912 Transglycosylase SII_RS08485 PF00579 tRNA synthetases class I (W and Y) SII_RS08485 PF01479 S4 domain SII_RS08490 PF13847 Methyltransferase domain SII_RS08495 PF01694 Rhomboid family SII_RS08500 PF01812 5-formyltetrahydrofolate cyclo-ligase family SII_RS08505 PF01546 Peptidase family M20/M25/M40 SII_RS08505 PF07687 Peptidase dimerisation domain SII_RS08510 PF00132 Bacterial transferase hexapeptide (six repeats) SII_RS08510 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SII_RS08510 PF14602 Hexapeptide repeat of succinyl-transferase SII_RS08515 PF00749 tRNA synthetases class I (E and Q), catalytic domain SII_RS08520 PF13481 AAA domain SII_RS08520 PF13541 Subunit ChlI of Mg-chelatase SII_RS08525 PF00857 Isochorismatase family SII_RS08530 PF00692 dUTPase SII_RS08535 PF02016 LD-carboxypeptidase SII_RS08545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SII_RS08545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SII_RS08550 PF00483 Nucleotidyl transferase SII_RS08565 PF01243 Pyridoxamine 5'-phosphate oxidase SII_RS08660 PF01196 Ribosomal protein L17 SII_RS08665 PF01000 RNA polymerase Rpb3/RpoA insert domain SII_RS08665 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SII_RS08665 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SII_RS08670 PF00411 Ribosomal protein S11 SII_RS08675 PF00416 Ribosomal protein S13/S18 SII_RS08680 PF01176 Translation initiation factor 1A / IF-1 SII_RS08685 PF00406 Adenylate kinase SII_RS08690 PF00344 SecY translocase SII_RS08695 PF00828 Ribosomal protein L18e/L15 SII_RS08700 PF00327 Ribosomal protein L30p/L7e SII_RS08705 PF00333 Ribosomal protein S5, N-terminal domain SII_RS08705 PF03719 Ribosomal protein S5, C-terminal domain SII_RS08710 PF00861 Ribosomal L18p/L5e family SII_RS08715 PF00347 Ribosomal protein L6 SII_RS08720 PF00410 Ribosomal protein S8 SII_RS08725 PF00253 Ribosomal protein S14p/S29e SII_RS08730 PF00281 Ribosomal protein L5 SII_RS08730 PF00673 ribosomal L5P family C-terminus SII_RS08735 PF00467 KOW motif SII_RS08735 PF17136 SII_RS08735 SII_RS08740 PF00238 Ribosomal protein L14p/L23e SII_RS08745 PF00366 Ribosomal protein S17 SII_RS08750 PF00831 Ribosomal L29 protein SII_RS08755 PF00252 Ribosomal protein L16p/L10e SII_RS08760 PF00189 Ribosomal protein S3, C-terminal domain SII_RS08760 PF07650 KH domain SII_RS08765 PF00237 Ribosomal protein L22p/L17e SII_RS08770 PF00203 Ribosomal protein S19 SII_RS08775 PF00181 Ribosomal Proteins L2, RNA binding domain SII_RS08775 PF03947 Ribosomal Proteins L2, C-terminal domain SII_RS08780 PF00276 Ribosomal protein L23 SII_RS08785 PF00573 Ribosomal protein L4/L1 family SII_RS08790 PF00297 Ribosomal protein L3 SII_RS08795 PF00338 Ribosomal protein S10p/S20e SII_RS08800 PF00485 Phosphoribulokinase / Uridine kinase family SII_RS08805 PF01702 Queuine tRNA-ribosyltransferase SII_RS08810 PF06161 SII_RS08810 SII_RS08815 PF13671 AAA domain SII_RS08820 PF13380 CoA binding domain SII_RS08825 PF00476 DNA polymerase family A SII_RS08825 PF01367 5'-3' exonuclease, C-terminal SAM fold SII_RS08825 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SII_RS08830 PF14317 SII_RS08830 SII_RS08835 PF08282 haloacid dehalogenase-like hydrolase SII_RS08840 PF00367 phosphotransferase system, EIIB SII_RS08840 PF02378 Phosphotransferase system, EIIC SII_RS08845 PF01380 SIS domain SII_RS08845 PF01418 Helix-turn-helix domain, rpiR family SII_RS08850 PF00512 His Kinase A (phospho-acceptor) domain SII_RS08850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS08855 PF00072 Response regulator receiver domain SII_RS08855 PF00486 Transcriptional regulatory protein, C terminal SII_RS08860 PF00746 SII_RS08860 SII_RS08860 PF04650 SII_RS08860 SII_RS08860 PF11966 SII_RS08860 SII_RS08875 PF14897 SII_RS08875 SII_RS08880 PF00535 Glycosyl transferase family 2 SII_RS08885 PF00534 Glycosyl transferases group 1 SII_RS08885 PF13477 Glycosyl transferase 4-like SII_RS08890 PF01370 NAD dependent epimerase/dehydratase family SII_RS08895 PF02397 SII_RS08895 SII_RS08905 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SII_RS08910 PF02706 Chain length determinant protein SII_RS08920 PF02916 DNA polymerase processivity factor SII_RS08920 PF03816 Cell envelope-related transcriptional attenuator domain SII_RS08925 PF13353 4Fe-4S single cluster domain SII_RS08930 PF13302 Acetyltransferase (GNAT) domain SII_RS08935 PF13302 Acetyltransferase (GNAT) domain SII_RS08940 PF03477 ATP cone domain SII_RS08940 PF13597 Anaerobic ribonucleoside-triphosphate reductase SII_RS08950 PF13091 PLD-like domain SII_RS08950 PF13396 SII_RS08950 SII_RS08955 PF12182 Bacterial lipoprotein SII_RS08960 PF08245 Mur ligase middle domain SII_RS08965 PF06949 SII_RS08965 SII_RS08970 PF03652 Uncharacterised protein family (UPF0081) SII_RS08975 PF06135 SII_RS08975 SII_RS08980 PF06998 Protein of unknown function (DUF1307) SII_RS08990 PF00462 Glutaredoxin SII_RS08990 PF03960 ArsC family SII_RS08995 PF00154 recA bacterial DNA recombination protein SII_RS09000 PF00994 Probable molybdopterin binding domain SII_RS09000 PF02464 Competence-damaged protein SII_RS09010 PF03352 Methyladenine glycosylase SII_RS09015 PF01330 RuvA N terminal domain SII_RS09015 PF07499 RuvA, C-terminal domain SII_RS09015 PF14520 Helix-hairpin-helix domain SII_RS09020 PF01381 Helix-turn-helix SII_RS09025 PF06271 SII_RS09025 SII_RS09030 PF01119 DNA mismatch repair protein, C-terminal domain SII_RS09030 PF08676 MutL C terminal dimerisation domain SII_RS09030 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SII_RS09035 PF04397 LytTr DNA-binding domain SII_RS09040 PF11457 SII_RS09040 SII_RS09045 PF00488 MutS domain V SII_RS09045 PF01624 MutS domain I SII_RS09045 PF05188 MutS domain II SII_RS09045 PF05190 MutS family domain IV SII_RS09045 PF05192 MutS domain III SII_RS09050 PF01316 Arginine repressor, DNA binding domain SII_RS09050 PF02863 Arginine repressor, C-terminal domain SII_RS09055 PF00750 tRNA synthetases class I (R) SII_RS09055 PF03485 Arginyl tRNA synthetase N terminal domain SII_RS09055 PF05746 DALR anticodon binding domain SII_RS09060 PF07972 NrdI Flavodoxin like SII_RS09070 PF00343 Carbohydrate phosphorylase SII_RS09075 PF02446 4-alpha-glucanotransferase SII_RS09085 PF13416 Bacterial extracellular solute-binding protein SII_RS09090 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS09095 PF00528 Binding-protein-dependent transport system inner membrane component SII_RS09105 PF00356 Bacterial regulatory proteins, lacI family SII_RS09105 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SII_RS09110 PF00128 Alpha amylase, catalytic domain SII_RS09110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SII_RS09115 PF02588 SII_RS09115 SII_RS09115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SII_RS09120 PF00152 tRNA synthetases class II (D, K and N) SII_RS09120 PF01336 OB-fold nucleic acid binding domain SII_RS09120 PF02938 GAD domain SII_RS09130 PF03129 Anticodon binding domain SII_RS09130 PF13393 Histidyl-tRNA synthetase SII_RS09135 PF01783 Ribosomal L32p protein family SII_RS09140 PF00471 Ribosomal protein L33 SII_RS09150 PF00069 Protein kinase domain SII_RS09195 PF00910 RNA helicase SII_RS09195 PF01719 Plasmid replication protein SII_RS09200 PF13411 MerR HTH family regulatory protein SII_RS09205 PF00589 Phage integrase family SII_RS09205 PF14659 Phage integrase, N-terminal SAM-like domain SII_RS09220 PF12844 Helix-turn-helix domain SII_RS09225 PF00122 E1-E2 ATPase SII_RS09225 PF00702 haloacid dehalogenase-like hydrolase SII_RS09230 PF01545 Cation efflux family SII_RS09235 PF00440 Bacterial regulatory proteins, tetR family SII_RS09240 PF07690 Major Facilitator Superfamily SII_RS09245 PF03572 Peptidase family S41 SII_RS09250 PF02245 Methylpurine-DNA glycosylase (MPG) SII_RS09255 PF00455 SII_RS09255 SII_RS09255 PF08220 DeoR-like helix-turn-helix domain SII_RS09260 PF08282 haloacid dehalogenase-like hydrolase SII_RS09270 PF04914 DltD C-terminal region SII_RS09270 PF04915 DltD N-terminal region SII_RS09270 PF04918 DltD central region SII_RS09275 PF00550 Phosphopantetheine attachment site SII_RS09280 PF03062 SII_RS09280 SII_RS09285 PF00501 AMP-binding enzyme SII_RS09285 PF13193 AMP-binding enzyme C-terminal domain SII_RS09290 PF12459 SII_RS09290 SII_RS09295 PF03551 Transcriptional regulator PadR-like family SII_RS09300 PF08006 SII_RS09300 SII_RS09300 PF13349 SII_RS09300 SII_RS09305 PF13419 Haloacid dehalogenase-like hydrolase SII_RS09310 PF14262 Domain of unknown function (DUF4353) SII_RS09315 PF16316 SII_RS09315 SII_RS09320 PF09359 VTC domain SII_RS09330 PF00085 Thioredoxin SII_RS09350 PF08282 haloacid dehalogenase-like hydrolase SII_RS09355 PF12698 ABC-2 family transporter protein SII_RS09360 PF00440 Bacterial regulatory proteins, tetR family SII_RS09365 PF00163 Ribosomal protein S4/S9 N-terminal domain SII_RS09365 PF01479 S4 domain SII_RS09370 PF13419 Haloacid dehalogenase-like hydrolase SII_RS09375 PF06257 Protein of unknown function (DUF1021) SII_RS09380 PF00772 DnaB-like helicase N terminal domain SII_RS09380 PF03796 DnaB-like helicase C terminal domain SII_RS09385 PF01281 Ribosomal protein L9, N-terminal domain SII_RS09385 PF03948 Ribosomal protein L9, C-terminal domain SII_RS09390 PF01368 DHH family SII_RS09390 PF02272 DHHA1 domain SII_RS09395 PF01134 Glucose inhibited division protein A SII_RS09395 PF13932 GidA associated domain 3 SII_RS09400 PF03054 tRNA methyl transferase SII_RS09405 PF01476 LysM domain SII_RS09410 PF01842 ACT domain SII_RS09410 PF03315 Serine dehydratase beta chain SII_RS09415 PF03313 SII_RS09415 SII_RS09420 PF13419 Haloacid dehalogenase-like hydrolase SII_RS09425 PF01464 Transglycosylase SLT domain SII_RS09425 PF01476 LysM domain SII_RS09430 PF02361 Cobalt transport protein SII_RS09435 PF00005 ABC transporter SII_RS09440 PF00005 ABC transporter SII_RS09445 PF01066 CDP-alcohol phosphatidyltransferase SII_RS09450 PF13413 Helix-turn-helix domain SII_RS09455 PF00675 Insulinase (Peptidase family M16) SII_RS09455 PF05193 Peptidase M16 inactive domain SII_RS09460 PF05193 Peptidase M16 inactive domain SII_RS09465 PF13275 S4 domain SII_RS09470 PF02463 RecF/RecN/SMC N terminal domain SII_RS09475 PF00478 IMP dehydrogenase / GMP reductase domain SII_RS09475 PF00571 CBS domain SII_RS09480 PF00579 tRNA synthetases class I (W and Y) SII_RS09485 PF01370 NAD dependent epimerase/dehydratase family SII_RS09490 PF00121 Triosephosphate isomerase SII_RS09495 PF02525 Flavodoxin-like fold SII_RS09500 PF00005 ABC transporter SII_RS09500 PF12848 ABC transporter SII_RS09505 PF09586 SII_RS09505 SII_RS09520 PF00072 Response regulator receiver domain SII_RS09520 PF04397 LytTr DNA-binding domain SII_RS09525 PF14501 GHKL domain SII_RS09540 PF02590 Predicted SPOUT methyltransferase SII_RS09545 PF13180 PDZ domain SII_RS09545 PF13365 Trypsin-like peptidase domain SII_RS09550 PF02195 ParB-like nuclease domain