SII_RS00005 SM00382 ATPases associated with a variety of cellular activities SII_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SII_RS00010 SM00480 DNA polymerase III beta subunit SII_RS00035 SM00487 DEAD-like helicases superfamily SII_RS00035 SM00490 helicase superfamily c-terminal domain SII_RS00035 SM00982 SII_RS00035 SII_RS00035 SM01058 CarD-like/TRCF domain SII_RS00040 SM00363 S4 RNA-binding domain SII_RS00055 SM00977 TilS substrate C-terminal domain SII_RS00065 SM00382 ATPases associated with a variety of cellular activities SII_RS00200 SM01400 SII_RS00200 SII_RS00230 SM01211 SII_RS00230 SII_RS00260 SM00798 AICARFT/IMPCHase bienzyme SII_RS00260 SM00851 MGS-like domain SII_RS00270 SM01209 SII_RS00270 SII_RS00270 SM01210 SII_RS00270 SII_RS00275 SM01001 AIR carboxylase SII_RS00300 SM00998 Adenylosuccinate lyase C-terminus SII_RS00320 SM01120 SII_RS00320 SII_RS00335 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS00335 SM00866 SII_RS00335 SII_RS00370 SM01133 SII_RS00370 SII_RS00385 SM00382 ATPases associated with a variety of cellular activities SII_RS00405 SM00327 von Willebrand factor (vWF) type A domain SII_RS00425 SM00226 Low molecular weight phosphatase family SII_RS00430 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SII_RS00475 SM01130 SII_RS00475 SII_RS00595 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS00600 SM00382 ATPases associated with a variety of cellular activities SII_RS00645 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SII_RS00645 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SII_RS00680 SM00382 ATPases associated with a variety of cellular activities SII_RS00680 SM01086 C-terminal, D2-small domain, of ClpB protein SII_RS00725 SM00788 Adenylosuccinate synthetase SII_RS00780 SM00393 Putative single-stranded nucleic acids-binding domain SII_RS00780 SM01245 SII_RS00780 SII_RS00805 SM00493 SII_RS00805 SII_RS00955 SM00650 Ribosomal RNA adenine dimethylases SII_RS00980 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SII_RS01010 SM00838 Elongation factor G C-terminus SII_RS01010 SM00889 Elongation factor G, domain IV SII_RS01015 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SII_RS01020 SM00849 Metallo-beta-lactamase superfamily SII_RS01075 SM00422 helix_turn_helix, mercury resistance SII_RS01110 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SII_RS01110 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SII_RS01210 SM00463 Small MutS-related domain SII_RS01210 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SII_RS01210 SM00534 ATPase domain of DNA mismatch repair MUTS family SII_RS01245 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SII_RS01315 SM00342 helix_turn_helix, arabinose operon control protein SII_RS01340 SM00382 ATPases associated with a variety of cellular activities SII_RS01360 SM00448 cheY-homologous receiver domain SII_RS01360 SM00862 Transcriptional regulatory protein, C terminal SII_RS01365 SM00387 Histidine kinase-like ATPases SII_RS01365 SM00388 His Kinase A (phosphoacceptor) domain SII_RS01375 SM00382 ATPases associated with a variety of cellular activities SII_RS01380 SM00642 Alpha-amylase domain SII_RS01390 SM00382 ATPases associated with a variety of cellular activities SII_RS01510 SM00382 ATPases associated with a variety of cellular activities SII_RS01525 SM00841 Elongation factor P, C-terminal SII_RS01525 SM01185 SII_RS01525 SII_RS01635 SM00530 Helix-turn-helix XRE-family like proteins SII_RS01655 SM00382 ATPases associated with a variety of cellular activities SII_RS01705 SM01350 SII_RS01705 SII_RS01710 SM00448 cheY-homologous receiver domain SII_RS01710 SM00862 Transcriptional regulatory protein, C terminal SII_RS01760 SM00487 DEAD-like helicases superfamily SII_RS01760 SM00490 helicase superfamily c-terminal domain SII_RS01810 SM00967 RNA 2'-O ribose methyltransferase substrate binding SII_RS01850 SM00116 Domain in cystathionine beta-synthase and other proteins. SII_RS01870 SM00363 S4 RNA-binding domain SII_RS01875 SM01234 SII_RS01875 SII_RS01900 SM00014 Acid phosphatase homologues SII_RS01910 SM00729 Elongator protein 3, MiaB family, Radical SAM SII_RS01950 SM00382 ATPases associated with a variety of cellular activities SII_RS01950 SM01086 C-terminal, D2-small domain, of ClpB protein SII_RS01960 SM00899 SII_RS01960 SII_RS01985 SM00382 ATPases associated with a variety of cellular activities SII_RS02045 SM00382 ATPases associated with a variety of cellular activities SII_RS02065 SM00411 bacterial (prokaryotic) histone like domain SII_RS02075 SM00855 Phosphoglycerate mutase family SII_RS02085 SM00493 SII_RS02085 SII_RS02115 SM00530 Helix-turn-helix XRE-family like proteins SII_RS02140 SM00487 DEAD-like helicases superfamily SII_RS02140 SM00490 helicase superfamily c-terminal domain SII_RS02145 SM01133 SII_RS02145 SII_RS02190 SM01061 CAT RNA binding domain SII_RS02250 SM00028 Tetratricopeptide repeats SII_RS02280 SM00382 ATPases associated with a variety of cellular activities SII_RS02325 SM00382 ATPases associated with a variety of cellular activities SII_RS02345 SM00642 Alpha-amylase domain SII_RS02400 SM00382 ATPases associated with a variety of cellular activities SII_RS02420 SM00892 DNA/RNA non-specific endonuclease SII_RS02425 SM00382 ATPases associated with a variety of cellular activities SII_RS02430 SM00382 ATPases associated with a variety of cellular activities SII_RS02490 SM00420 helix_turn_helix, Deoxyribose operon repressor SII_RS02490 SM01134 SII_RS02490 SII_RS02525 SM00382 ATPases associated with a variety of cellular activities SII_RS02540 SM00873 B3/4 domain SII_RS02540 SM00874 tRNA synthetase B5 domain SII_RS02540 SM00896 Ferredoxin-fold anticodon binding domain SII_RS02580 SM00855 Phosphoglycerate mutase family SII_RS02615 SM00481 DNA polymerase alpha chain like domain SII_RS02660 SM00382 ATPases associated with a variety of cellular activities SII_RS02665 SM00382 ATPases associated with a variety of cellular activities SII_RS02695 SM00904 Riboflavin kinase SII_RS02735 SM00382 ATPases associated with a variety of cellular activities SII_RS02740 SM00382 ATPases associated with a variety of cellular activities SII_RS02765 SM00881 CoA binding domain SII_RS02780 SM01400 SII_RS02780 SII_RS02785 SM01118 SII_RS02785 SII_RS02790 SM00954 Region found in RelA / SpoT proteins SII_RS02810 SM00478 endonuclease III SII_RS02885 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS02885 SM00732 Likely ribonuclease with RNase H fold. SII_RS02890 SM00731 SprT homologues. SII_RS02940 SM00849 Metallo-beta-lactamase superfamily SII_RS02960 SM00382 ATPases associated with a variety of cellular activities SII_RS03015 SM00257 Lysin motif SII_RS03050 SM00487 DEAD-like helicases superfamily SII_RS03050 SM00490 helicase superfamily c-terminal domain SII_RS03080 SM00838 Elongation factor G C-terminus SII_RS03090 SM00382 ATPases associated with a variety of cellular activities SII_RS03110 SM00859 Semialdehyde dehydrogenase, NAD binding domain SII_RS03115 SM01130 SII_RS03115 SII_RS03130 SM00342 helix_turn_helix, arabinose operon control protein SII_RS03130 SM00871 Bacterial transcription activator, effector binding domain SII_RS03250 SM00530 Helix-turn-helix XRE-family like proteins SII_RS03260 SM00650 Ribosomal RNA adenine dimethylases SII_RS03295 SM00889 Elongation factor G, domain IV SII_RS03305 SM00530 Helix-turn-helix XRE-family like proteins SII_RS03340 SM00487 DEAD-like helicases superfamily SII_RS03340 SM00490 helicase superfamily c-terminal domain SII_RS03385 SM00530 Helix-turn-helix XRE-family like proteins SII_RS03415 SM00530 Helix-turn-helix XRE-family like proteins SII_RS03435 SM00729 Elongator protein 3, MiaB family, Radical SAM SII_RS03440 SM00382 ATPases associated with a variety of cellular activities SII_RS03460 SM00382 ATPases associated with a variety of cellular activities SII_RS03500 SM00530 Helix-turn-helix XRE-family like proteins SII_RS03515 SM00382 ATPases associated with a variety of cellular activities SII_RS03530 SM00354 helix_turn _helix lactose operon repressor SII_RS03605 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS03645 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SII_RS03645 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SII_RS03660 SM00382 ATPases associated with a variety of cellular activities SII_RS03665 SM00382 ATPases associated with a variety of cellular activities SII_RS03700 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SII_RS03700 SM01232 SII_RS03700 SII_RS03720 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS03720 SM00955 SII_RS03720 SII_RS03730 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SII_RS03735 SM00849 Metallo-beta-lactamase superfamily SII_RS03750 SM00986 Uracil DNA glycosylase superfamily SII_RS03750 SM00987 UreE urease accessory protein, C-terminal domain SII_RS03780 SM00116 Domain in cystathionine beta-synthase and other proteins. SII_RS03795 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS03800 SM00873 B3/4 domain SII_RS03825 SM00292 breast cancer carboxy-terminal domain SII_RS03825 SM00532 Ligase N family SII_RS03830 SM00046 Diacylglycerol kinase catalytic domain (presumed) SII_RS03835 SM00642 Alpha-amylase domain SII_RS03875 SM00382 ATPases associated with a variety of cellular activities SII_RS03880 SM00382 ATPases associated with a variety of cellular activities SII_RS03885 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS03915 SM01266 SII_RS03915 SII_RS03925 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SII_RS03925 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SII_RS03925 SM00493 SII_RS03925 SII_RS04000 SM00530 Helix-turn-helix XRE-family like proteins SII_RS04005 SM00382 ATPases associated with a variety of cellular activities SII_RS04005 SM00962 SRP54-type protein, GTPase domain SII_RS04005 SM00963 SRP54-type protein, helical bundle domain SII_RS04015 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS04015 SM00866 SII_RS04015 SII_RS04055 SM00937 SII_RS04055 SII_RS04085 SM01240 SII_RS04085 SII_RS04125 SM00382 ATPases associated with a variety of cellular activities SII_RS04140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SII_RS04140 SM00387 Histidine kinase-like ATPases SII_RS04145 SM00342 helix_turn_helix, arabinose operon control protein SII_RS04145 SM00448 cheY-homologous receiver domain SII_RS04180 SM00400 zinc finger SII_RS04180 SM00493 SII_RS04180 SII_RS04200 SM00434 DNA Topoisomerase IV SII_RS04225 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS04250 SM00434 DNA Topoisomerase IV SII_RS04260 SM00387 Histidine kinase-like ATPases SII_RS04260 SM00433 TopoisomeraseII SII_RS04265 SM01207 SII_RS04265 SII_RS04305 SM01192 SII_RS04305 SII_RS04305 SM01193 SII_RS04305 SII_RS04360 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS04395 SM00382 ATPases associated with a variety of cellular activities SII_RS04410 SM01133 SII_RS04410 SII_RS04415 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SII_RS04440 SM00642 Alpha-amylase domain SII_RS04445 SM00387 Histidine kinase-like ATPases SII_RS04445 SM00388 His Kinase A (phosphoacceptor) domain SII_RS04450 SM00448 cheY-homologous receiver domain SII_RS04450 SM00862 Transcriptional regulatory protein, C terminal SII_RS04480 SM00851 MGS-like domain SII_RS04480 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SII_RS04480 SM01209 SII_RS04480 SII_RS04485 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SII_RS04505 SM00365 Leucine-rich repeat, SDS22-like subfamily SII_RS04525 SM00562 SII_RS04525 SII_RS04555 SM00729 Elongator protein 3, MiaB family, Radical SAM SII_RS04575 SM00487 DEAD-like helicases superfamily SII_RS04575 SM00490 helicase superfamily c-terminal domain SII_RS04580 SM00062 Bacterial periplasmic substrate-binding proteins SII_RS04580 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SII_RS04580 SM00918 Ligated ion channel L-glutamate- and glycine-binding site SII_RS04585 SM00382 ATPases associated with a variety of cellular activities SII_RS04590 SM00382 ATPases associated with a variety of cellular activities SII_RS04595 SM00382 ATPases associated with a variety of cellular activities SII_RS04600 SM00382 ATPases associated with a variety of cellular activities SII_RS04610 SM00047 Lysozyme subfamily 2 SII_RS04620 SM00382 ATPases associated with a variety of cellular activities SII_RS04620 SM00994 ClpX C4-type zinc finger SII_RS04620 SM01086 C-terminal, D2-small domain, of ClpB protein SII_RS04650 SM00830 Chorismate mutase type II SII_RS04680 SM00363 S4 RNA-binding domain SII_RS04705 SM00450 Rhodanese Homology Domain SII_RS04710 SM00450 Rhodanese Homology Domain SII_RS04735 SM00981 SII_RS04735 SII_RS04755 SM00116 Domain in cystathionine beta-synthase and other proteins. SII_RS04755 SM00420 helix_turn_helix, Deoxyribose operon repressor SII_RS04770 SM00382 ATPases associated with a variety of cellular activities SII_RS04770 SM00962 SRP54-type protein, GTPase domain SII_RS04770 SM00963 SRP54-type protein, helical bundle domain SII_RS04785 SM00968 SMC proteins Flexible Hinge Domain SII_RS04790 SM00358 Double-stranded RNA binding motif SII_RS04790 SM00535 Ribonuclease III family SII_RS04800 SM00849 Metallo-beta-lactamase superfamily SII_RS04805 SM00091 PAS domain SII_RS04805 SM00387 Histidine kinase-like ATPases SII_RS04805 SM00388 His Kinase A (phosphoacceptor) domain SII_RS04810 SM00448 cheY-homologous receiver domain SII_RS04810 SM00862 Transcriptional regulatory protein, C terminal SII_RS04830 SM00354 helix_turn _helix lactose operon repressor SII_RS04890 SM00382 ATPases associated with a variety of cellular activities SII_RS04985 SM00382 ATPases associated with a variety of cellular activities SII_RS04990 SM00387 Histidine kinase-like ATPases SII_RS04990 SM00388 His Kinase A (phosphoacceptor) domain SII_RS04995 SM00448 cheY-homologous receiver domain SII_RS04995 SM00862 Transcriptional regulatory protein, C terminal SII_RS05010 SM01260 SII_RS05010 SII_RS05015 SM00382 ATPases associated with a variety of cellular activities SII_RS05050 SM00857 Resolvase, N terminal domain SII_RS05070 SM00382 ATPases associated with a variety of cellular activities SII_RS05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS05105 SM00487 DEAD-like helicases superfamily SII_RS05105 SM00490 helicase superfamily c-terminal domain SII_RS05115 SM00966 SpoVT / AbrB like domain SII_RS05120 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SII_RS05120 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SII_RS05120 SM00493 SII_RS05120 SII_RS05300 SM00641 Glycosyl hydrolases family 25 SII_RS05345 SM00382 ATPases associated with a variety of cellular activities SII_RS05355 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS05360 SM00986 Uracil DNA glycosylase superfamily SII_RS05360 SM00987 UreE urease accessory protein, C-terminal domain SII_RS05380 SM00465 GIY-YIG type nucleases (URI domain) SII_RS05435 SM00563 Phosphate acyltransferases SII_RS05455 SM00855 Phosphoglycerate mutase family SII_RS05495 SM00342 helix_turn_helix, arabinose operon control protein SII_RS05495 SM00448 cheY-homologous receiver domain SII_RS05535 SM00872 Alpha mannosidase, middle domain SII_RS05540 SM01149 SII_RS05540 SII_RS05620 SM00420 helix_turn_helix, Deoxyribose operon repressor SII_RS05620 SM01134 SII_RS05620 SII_RS05640 SM00382 ATPases associated with a variety of cellular activities SII_RS05650 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05665 SM00448 cheY-homologous receiver domain SII_RS05665 SM00862 Transcriptional regulatory protein, C terminal SII_RS05680 SM00387 Histidine kinase-like ATPases SII_RS05680 SM00433 TopoisomeraseII SII_RS05705 SM00479 SII_RS05705 SII_RS05705 SM00487 DEAD-like helicases superfamily SII_RS05705 SM00491 SII_RS05705 SII_RS05710 SM00849 Metallo-beta-lactamase superfamily SII_RS05720 SM00382 ATPases associated with a variety of cellular activities SII_RS05725 SM00937 SII_RS05725 SII_RS05730 SM00831 Cation transporter/ATPase, N-terminus SII_RS05740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SII_RS05760 SM00382 ATPases associated with a variety of cellular activities SII_RS05765 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SII_RS05880 SM00419 helix_turn_helix, cAMP Regulatory protein SII_RS05940 SM00448 cheY-homologous receiver domain SII_RS05940 SM00850 LytTr DNA-binding domain SII_RS05960 SM00382 ATPases associated with a variety of cellular activities SII_RS05980 SM00487 DEAD-like helicases superfamily SII_RS06025 SM00649 Ribosomal protein L11/L12 SII_RS06040 SM00382 ATPases associated with a variety of cellular activities SII_RS06040 SM00843 SII_RS06040 SII_RS06060 SM00382 ATPases associated with a variety of cellular activities SII_RS06090 SM01022 SII_RS06090 SII_RS06120 SM00357 Cold shock protein domain SII_RS06150 SM00382 ATPases associated with a variety of cellular activities SII_RS06165 SM00850 LytTr DNA-binding domain SII_RS06175 SM00382 ATPases associated with a variety of cellular activities SII_RS06185 SM00382 ATPases associated with a variety of cellular activities SII_RS06195 SM00387 Histidine kinase-like ATPases SII_RS06200 SM00448 cheY-homologous receiver domain SII_RS06200 SM00862 Transcriptional regulatory protein, C terminal SII_RS06235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SII_RS06260 SM00478 endonuclease III SII_RS06300 SM00116 Domain in cystathionine beta-synthase and other proteins. SII_RS06305 SM00382 ATPases associated with a variety of cellular activities SII_RS06310 SM00382 ATPases associated with a variety of cellular activities SII_RS06345 SM00831 Cation transporter/ATPase, N-terminus SII_RS06385 SM01131 SII_RS06385 SII_RS06400 SM00642 Alpha-amylase domain SII_RS06410 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS06410 SM00866 SII_RS06410 SII_RS06415 SM01091 Transporter associated domain SII_RS06440 SM00363 S4 RNA-binding domain SII_RS06460 SM00864 Tubulin/FtsZ family, GTPase domain SII_RS06460 SM00865 Tubulin/FtsZ family, C-terminal domain SII_RS06465 SM00842 Cell division protein FtsA SII_RS06490 SM00838 Elongation factor G C-terminus SII_RS06500 SM00450 Rhodanese Homology Domain SII_RS06560 SM00487 DEAD-like helicases superfamily SII_RS06560 SM00490 helicase superfamily c-terminal domain SII_RS06670 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS06680 SM00421 helix_turn_helix, Lux Regulon SII_RS06680 SM00448 cheY-homologous receiver domain SII_RS06685 SM00387 Histidine kinase-like ATPases SII_RS06695 SM00220 Serine/Threonine protein kinases, catalytic domain SII_RS06695 SM00740 SII_RS06695 SII_RS06700 SM00331 Sigma factor PP2C-like phosphatases SII_RS06700 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SII_RS06715 SM00487 DEAD-like helicases superfamily SII_RS06715 SM00490 helicase superfamily c-terminal domain SII_RS06720 SM01409 SII_RS06720 SII_RS06725 SM00072 Guanylate kinase homologues. SII_RS06730 SM00322 K homology RNA-binding domain SII_RS06730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SII_RS06755 SM00981 SII_RS06755 SII_RS06820 SM00382 ATPases associated with a variety of cellular activities SII_RS06830 SM00487 DEAD-like helicases superfamily SII_RS06830 SM00490 helicase superfamily c-terminal domain SII_RS06835 SM00936 Penicillin-binding protein 5, C-terminal domain SII_RS06855 SM00382 ATPases associated with a variety of cellular activities SII_RS06880 SM00062 Bacterial periplasmic substrate-binding proteins SII_RS06885 SM00382 ATPases associated with a variety of cellular activities SII_RS06895 SM00244 prohibitin homologues SII_RS06900 SM00421 helix_turn_helix, Lux Regulon SII_RS06900 SM00448 cheY-homologous receiver domain SII_RS06915 SM00382 ATPases associated with a variety of cellular activities SII_RS06920 SM01120 SII_RS06920 SII_RS06920 SM01121 SII_RS06920 SII_RS06940 SM00850 LytTr DNA-binding domain SII_RS06985 SM00740 SII_RS06985 SII_RS07000 SM00530 Helix-turn-helix XRE-family like proteins SII_RS07095 SM00322 K homology RNA-binding domain SII_RS07125 SM00382 ATPases associated with a variety of cellular activities SII_RS07170 SM00829 Enoylreductase SII_RS07215 SM00878 Biotin carboxylase C-terminal domain SII_RS07230 SM00825 Beta-ketoacyl synthase SII_RS07235 SM00822 SII_RS07235 SII_RS07240 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SII_RS07260 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS07305 SM00382 ATPases associated with a variety of cellular activities SII_RS07305 SM00930 SII_RS07305 SII_RS07320 SM00062 Bacterial periplasmic substrate-binding proteins SII_RS07360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SII_RS07370 SM01103 SII_RS07370 SII_RS07395 SM00829 Enoylreductase SII_RS07400 SM00845 GatB domain SII_RS07445 SM00870 SII_RS07445 SII_RS07450 SM00487 DEAD-like helicases superfamily SII_RS07450 SM00490 helicase superfamily c-terminal domain SII_RS07455 SM01005 Alanine racemase, C-terminal domain SII_RS07470 SM00957 SecA DEAD-like domain SII_RS07470 SM00958 SecA preprotein cross-linking domain SII_RS07510 SM00345 helix_turn_helix gluconate operon transcriptional repressor SII_RS07510 SM00866 SII_RS07510 SII_RS07530 SM00382 ATPases associated with a variety of cellular activities SII_RS07535 SM00382 ATPases associated with a variety of cellular activities SII_RS07540 SM00347 helix_turn_helix multiple antibiotic resistance protein SII_RS07565 SM00640 Glycosyl hydrolases family 32 SII_RS07570 SM00354 helix_turn _helix lactose operon repressor SII_RS07580 SM00382 ATPases associated with a variety of cellular activities SII_RS07585 SM00382 ATPases associated with a variety of cellular activities SII_RS07610 SM00873 B3/4 domain SII_RS07655 SM00271 DnaJ molecular chaperone homology domain SII_RS07695 SM00855 Phosphoglycerate mutase family SII_RS07715 SM00354 helix_turn _helix lactose operon repressor SII_RS07725 SM01323 SII_RS07725 SII_RS07805 SM00530 Helix-turn-helix XRE-family like proteins SII_RS07815 SM00382 ATPases associated with a variety of cellular activities SII_RS07820 SM00382 ATPases associated with a variety of cellular activities SII_RS07880 SM00382 ATPases associated with a variety of cellular activities SII_RS07940 SM00967 RNA 2'-O ribose methyltransferase substrate binding SII_RS07945 SM00382 ATPases associated with a variety of cellular activities SII_RS07955 SM00535 Ribonuclease III family SII_RS07960 SM00840 SII_RS07960 SII_RS07975 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS07975 SM00322 K homology RNA-binding domain SII_RS07990 SM01387 SII_RS07990 SII_RS07995 SM00363 S4 RNA-binding domain SII_RS08070 SM00479 SII_RS08070 SII_RS08070 SM00481 DNA polymerase alpha chain like domain SII_RS08080 SM00642 Alpha-amylase domain SII_RS08095 SM00382 ATPases associated with a variety of cellular activities SII_RS08110 SM00529 Helix-turn-helix diphteria tox regulatory element SII_RS08110 SM00899 SII_RS08110 SII_RS08120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SII_RS08120 SM00954 Region found in RelA / SpoT proteins SII_RS08150 SM00382 ATPases associated with a variety of cellular activities SII_RS08175 SM00883 Chaperonin 10 Kd subunit SII_RS08210 SM00421 helix_turn_helix, Lux Regulon SII_RS08210 SM00448 cheY-homologous receiver domain SII_RS08215 SM00387 Histidine kinase-like ATPases SII_RS08290 SM01323 SII_RS08290 SII_RS08295 SM00861 Transketolase, pyrimidine binding domain SII_RS08310 SM01007 Class II Aldolase and Adducin N-terminal domain SII_RS08320 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SII_RS08340 SM00382 ATPases associated with a variety of cellular activities SII_RS08340 SM01086 C-terminal, D2-small domain, of ClpB protein SII_RS08440 SM01230 SII_RS08440 SII_RS08445 SM00422 helix_turn_helix, mercury resistance SII_RS08455 SM00257 Lysin motif SII_RS08470 SM00663 RNA polymerase I subunit A N-terminus SII_RS08485 SM00363 S4 RNA-binding domain SII_RS08520 SM00382 ATPases associated with a variety of cellular activities SII_RS08665 SM00662 RNA polymerases D SII_RS08680 SM00316 Ribosomal protein S1-like RNA-binding domain SII_RS08735 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SII_RS08740 SM01374 SII_RS08740 SII_RS08760 SM00322 K homology RNA-binding domain SII_RS08775 SM01382 SII_RS08775 SII_RS08775 SM01383 SII_RS08775 SII_RS08795 SM01403 SII_RS08795 SII_RS08820 SM00881 CoA binding domain SII_RS08825 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SII_RS08825 SM00474 3'-5' exonuclease SII_RS08825 SM00475 5'-3' exonuclease SII_RS08825 SM00482 DNA polymerase A domain SII_RS08850 SM00387 Histidine kinase-like ATPases SII_RS08850 SM00388 His Kinase A (phosphoacceptor) domain SII_RS08855 SM00448 cheY-homologous receiver domain SII_RS08855 SM00862 Transcriptional regulatory protein, C terminal SII_RS08950 SM00155 Phospholipase D. Active site motifs. SII_RS08970 SM00732 Likely ribonuclease with RNase H fold. SII_RS08995 SM00382 ATPases associated with a variety of cellular activities SII_RS09000 SM00852 Probable molybdopterin binding domain SII_RS09015 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SII_RS09020 SM00530 Helix-turn-helix XRE-family like proteins SII_RS09030 SM00853 MutL C terminal dimerisation domain SII_RS09030 SM01340 SII_RS09030 SII_RS09035 SM00850 LytTr DNA-binding domain SII_RS09045 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SII_RS09045 SM00534 ATPase domain of DNA mismatch repair MUTS family SII_RS09055 SM00836 DALR anticodon binding domain SII_RS09055 SM01016 Arginyl tRNA synthetase N terminal dom SII_RS09105 SM00354 helix_turn _helix lactose operon repressor SII_RS09110 SM00642 Alpha-amylase domain SII_RS09150 SM00220 Serine/Threonine protein kinases, catalytic domain SII_RS09245 SM00245 tail specific protease SII_RS09255 SM00420 helix_turn_helix, Deoxyribose operon repressor SII_RS09255 SM01134 SII_RS09255 SII_RS09365 SM00363 S4 RNA-binding domain SII_RS09365 SM01390 SII_RS09365 SII_RS09395 SM01228 SII_RS09395 SII_RS09405 SM00257 Lysin motif SII_RS09425 SM00257 Lysin motif SII_RS09435 SM00382 ATPases associated with a variety of cellular activities SII_RS09440 SM00382 ATPases associated with a variety of cellular activities SII_RS09475 SM00116 Domain in cystathionine beta-synthase and other proteins. SII_RS09475 SM01240 SII_RS09475 SII_RS09500 SM00382 ATPases associated with a variety of cellular activities SII_RS09520 SM00448 cheY-homologous receiver domain SII_RS09520 SM00850 LytTr DNA-binding domain SII_RS09545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SII_RS09550 SM00470 ParB-like nuclease domain