KE3_RS00005	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
KE3_RS00010	SM00480	DNA polymerase III beta subunit
KE3_RS00035	SM00487	DEAD-like helicases superfamily
KE3_RS00035	SM00490	helicase superfamily c-terminal domain
KE3_RS00035	SM00982	KE3_RS00035
KE3_RS00035	SM01058	CarD-like/TRCF domain
KE3_RS00040	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS00045	SM00363	S4 RNA-binding domain
KE3_RS00065	SM00977	TilS substrate C-terminal domain
KE3_RS00075	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00110	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS00115	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00130	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS00185	SM01126	KE3_RS00185
KE3_RS00210	SM00363	S4 RNA-binding domain
KE3_RS00225	SM00663	RNA polymerase I subunit A N-terminus
KE3_RS00235	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00280	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS00355	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00360	SM00883	Chaperonin 10 Kd subunit
KE3_RS00420	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
KE3_RS00420	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KE3_RS00460	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00515	SM00354	helix_turn _helix lactose operon repressor
KE3_RS00535	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00540	SM00640	Glycosyl hydrolases family 32
KE3_RS00570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
KE3_RS00570	SM00866	KE3_RS00570
KE3_RS00585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
KE3_RS00585	SM00866	KE3_RS00585
KE3_RS00600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KE3_RS00600	SM00954	Region found in RelA / SpoT proteins
KE3_RS00615	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00620	SM00420	helix_turn_helix, Deoxyribose operon repressor
KE3_RS00620	SM01134	KE3_RS00620
KE3_RS00640	SM01133	KE3_RS00640
KE3_RS00665	SM01061	CAT RNA binding domain
KE3_RS00720	SM00342	helix_turn_helix, arabinose operon control protein
KE3_RS00745	SM00642	Alpha-amylase domain
KE3_RS00750	SM00642	Alpha-amylase domain
KE3_RS00755	SM00354	helix_turn _helix lactose operon repressor
KE3_RS00780	SM01323	KE3_RS00780
KE3_RS00805	SM00479	KE3_RS00805
KE3_RS00805	SM00481	DNA polymerase alpha chain like domain
KE3_RS00810	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS00825	SM00100	Cyclic nucleotide-monophosphate binding domain
KE3_RS00835	SM01387	KE3_RS00835
KE3_RS00850	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS00850	SM00322	K homology RNA-binding domain
KE3_RS00865	SM00840	KE3_RS00865
KE3_RS00875	SM00967	RNA 2'-O ribose methyltransferase substrate binding
KE3_RS00910	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS00965	SM00382	ATPases associated with a variety of cellular activities
KE3_RS00975	SM00850	LytTr DNA-binding domain
KE3_RS01050	SM00650	Ribosomal RNA adenine dimethylases
KE3_RS01125	SM00855	Phosphoglycerate mutase family
KE3_RS01135	SM00047	Lysozyme subfamily 2
KE3_RS01155	SM00271	DnaJ molecular chaperone homology domain
KE3_RS01235	SM01120	KE3_RS01235
KE3_RS01235	SM01121	KE3_RS01235
KE3_RS01270	SM00244	prohibitin homologues
KE3_RS01275	SM00382	ATPases associated with a variety of cellular activities
KE3_RS01280	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS01305	SM00382	ATPases associated with a variety of cellular activities
KE3_RS01330	SM00936	Penicillin-binding protein 5, C-terminal domain 
KE3_RS01350	SM00382	ATPases associated with a variety of cellular activities
KE3_RS01355	SM00382	ATPases associated with a variety of cellular activities
KE3_RS01570	SM01400	KE3_RS01570
KE3_RS01600	SM01211	KE3_RS01600
KE3_RS01620	SM00798	AICARFT/IMPCHase bienzyme
KE3_RS01620	SM00851	MGS-like domain
KE3_RS01625	SM01209	KE3_RS01625
KE3_RS01625	SM01210	KE3_RS01625
KE3_RS01635	SM01001	AIR carboxylase
KE3_RS01645	SM00998	Adenylosuccinate lyase C-terminus
KE3_RS01655	SM00382	ATPases associated with a variety of cellular activities
KE3_RS01665	SM00226	Low molecular weight phosphatase family
KE3_RS01670	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
KE3_RS01700	SM01403	KE3_RS01700
KE3_RS01720	SM01382	KE3_RS01720
KE3_RS01720	SM01383	KE3_RS01720
KE3_RS01735	SM00322	K homology RNA-binding domain
KE3_RS01755	SM01374	KE3_RS01755
KE3_RS01760	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KE3_RS01815	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS01835	SM00662	RNA polymerases D
KE3_RS01895	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS01915	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
KE3_RS01920	SM00822	KE3_RS01920
KE3_RS01925	SM00825	Beta-ketoacyl synthase
KE3_RS01940	SM00878	Biotin carboxylase C-terminal domain
KE3_RS02025	SM00382	ATPases associated with a variety of cellular activities
KE3_RS02050	SM00267	diguanylate cyclase
KE3_RS02075	SM00322	K homology RNA-binding domain
KE3_RS02190	SM00861	Transketolase, pyrimidine binding domain
KE3_RS02200	SM00382	ATPases associated with a variety of cellular activities
KE3_RS02230	SM00740	KE3_RS02230
KE3_RS02240	SM00487	DEAD-like helicases superfamily
KE3_RS02240	SM00490	helicase superfamily c-terminal domain
KE3_RS02245	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS02255	SM00382	ATPases associated with a variety of cellular activities
KE3_RS02310	SM00981	KE3_RS02310
KE3_RS02330	SM00322	K homology RNA-binding domain
KE3_RS02330	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KE3_RS02335	SM00072	Guanylate kinase homologues.
KE3_RS02340	SM01409	KE3_RS02340
KE3_RS02345	SM00487	DEAD-like helicases superfamily
KE3_RS02345	SM00490	helicase superfamily c-terminal domain
KE3_RS02360	SM00331	Sigma factor PP2C-like phosphatases
KE3_RS02360	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
KE3_RS02365	SM00220	Serine/Threonine protein kinases, catalytic domain
KE3_RS02365	SM00740	KE3_RS02365
KE3_RS02380	SM00421	helix_turn_helix, Lux Regulon
KE3_RS02380	SM00448	cheY-homologous receiver domain
KE3_RS02390	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS02405	SM00487	DEAD-like helicases superfamily
KE3_RS02405	SM00490	helicase superfamily c-terminal domain
KE3_RS02695	SM00450	Rhodanese Homology Domain
KE3_RS02705	SM00838	Elongation factor G C-terminus
KE3_RS02745	SM00357	Cold shock protein domain
KE3_RS02765	SM00842	Cell division protein FtsA
KE3_RS02770	SM00864	Tubulin/FtsZ family, GTPase domain
KE3_RS02770	SM00865	Tubulin/FtsZ family, C-terminal domain
KE3_RS02790	SM00363	S4 RNA-binding domain
KE3_RS02815	SM00382	ATPases associated with a variety of cellular activities
KE3_RS02815	SM01086	C-terminal, D2-small domain, of ClpB protein
KE3_RS02825	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS02845	SM00382	ATPases associated with a variety of cellular activities
KE3_RS02850	SM00899	KE3_RS02850
KE3_RS02880	SM00287	Bacterial SH3 domain homologues
KE3_RS02905	SM00363	S4 RNA-binding domain
KE3_RS02935	SM00411	bacterial (prokaryotic) histone like domain
KE3_RS02955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
KE3_RS02965	SM00855	Phosphoglycerate mutase family
KE3_RS02985	SM00493	KE3_RS02985
KE3_RS03025	SM00487	DEAD-like helicases superfamily
KE3_RS03025	SM00490	helicase superfamily c-terminal domain
KE3_RS03030	SM00465	GIY-YIG type nucleases (URI domain)
KE3_RS03040	SM00563	Phosphate acyltransferases
KE3_RS03045	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KE3_RS03050	SM00849	Metallo-beta-lactamase superfamily
KE3_RS03085	SM00363	S4 RNA-binding domain
KE3_RS03120	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KE3_RS03145	SM00859	Semialdehyde dehydrogenase, NAD binding domain
KE3_RS03220	SM01329	KE3_RS03220
KE3_RS03250	SM00487	DEAD-like helicases superfamily
KE3_RS03250	SM00490	helicase superfamily c-terminal domain
KE3_RS03260	SM00917	LeuA allosteric (dimerisation) domain
KE3_RS03265	SM01329	KE3_RS03265
KE3_RS03290	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03325	SM00116	Domain in cystathionine beta-synthase and other proteins.
KE3_RS03350	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KE3_RS03350	SM00292	breast cancer carboxy-terminal domain
KE3_RS03350	SM00532	Ligase N family
KE3_RS03355	SM00046	Diacylglycerol kinase catalytic domain (presumed)
KE3_RS03390	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03415	SM00892	DNA/RNA non-specific endonuclease
KE3_RS03430	SM00873	B3/4 domain
KE3_RS03430	SM00874	tRNA synthetase B5 domain
KE3_RS03430	SM00896	Ferredoxin-fold anticodon binding domain
KE3_RS03510	SM00478	endonuclease III
KE3_RS03510	SM00525	KE3_RS03510
KE3_RS03550	SM00028	Tetratricopeptide repeats
KE3_RS03605	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03610	SM00849	Metallo-beta-lactamase superfamily
KE3_RS03615	SM00235	Zinc-dependent metalloprotease
KE3_RS03620	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03625	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS03630	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03635	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03655	SM00831	Cation transporter/ATPase, N-terminus
KE3_RS03665	SM00422	helix_turn_helix, mercury resistance
KE3_RS03695	SM00382	ATPases associated with a variety of cellular activities
KE3_RS03730	SM00465	GIY-YIG type nucleases (URI domain)
KE3_RS03760	SM00986	Uracil DNA glycosylase superfamily
KE3_RS03760	SM00987	UreE urease accessory protein, C-terminal domain 
KE3_RS03890	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS03890	SM00984	UDP binding domain
KE3_RS03925	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
KE3_RS03940	SM00986	Uracil DNA glycosylase superfamily
KE3_RS03940	SM00987	UreE urease accessory protein, C-terminal domain 
KE3_RS03950	SM01207	KE3_RS03950
KE3_RS03955	SM00387	Histidine kinase-like ATPases
KE3_RS03955	SM00433	TopoisomeraseII
KE3_RS03960	SM00434	DNA Topoisomerase IV
KE3_RS03985	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS04015	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
KE3_RS04025	SM00481	DNA polymerase alpha chain like domain
KE3_RS04060	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04065	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS04085	SM00855	Phosphoglycerate mutase family
KE3_RS04100	SM00881	CoA binding domain
KE3_RS04115	SM01400	KE3_RS04115
KE3_RS04120	SM01118	KE3_RS04120
KE3_RS04125	SM00954	Region found in RelA / SpoT proteins
KE3_RS04165	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04175	SM01240	KE3_RS04175
KE3_RS04260	SM00957	SecA DEAD-like domain
KE3_RS04260	SM00958	SecA preprotein cross-linking domain
KE3_RS04405	SM00937	KE3_RS04405
KE3_RS04435	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04440	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04445	SM00642	Alpha-amylase domain
KE3_RS04460	SM00861	Transketolase, pyrimidine binding domain
KE3_RS04505	SM00506	Appr-1"-p processing enzyme
KE3_RS04510	SM00450	Rhodanese Homology Domain
KE3_RS04515	SM00450	Rhodanese Homology Domain
KE3_RS04520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KE3_RS04565	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS04595	SM00487	DEAD-like helicases superfamily
KE3_RS04600	SM00481	DNA polymerase alpha chain like domain
KE3_RS04605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
KE3_RS04605	SM00866	KE3_RS04605
KE3_RS04615	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04615	SM00962	SRP54-type protein, GTPase domain
KE3_RS04615	SM00963	SRP54-type protein, helical bundle domain
KE3_RS04650	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS04655	SM00387	Histidine kinase-like ATPases
KE3_RS04660	SM00448	cheY-homologous receiver domain
KE3_RS04660	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS04670	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04695	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
KE3_RS04695	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
KE3_RS04695	SM00493	KE3_RS04695
KE3_RS04825	SM00382	ATPases associated with a variety of cellular activities
KE3_RS04825	SM01086	C-terminal, D2-small domain, of ClpB protein
KE3_RS04830	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
KE3_RS04830	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
KE3_RS04830	SM00493	KE3_RS04830
KE3_RS04925	SM00942	Primase C terminal 1 (PriCT-1)
KE3_RS04960	SM01266	KE3_RS04960
KE3_RS04985	SM00387	Histidine kinase-like ATPases
KE3_RS04985	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS04990	SM00448	cheY-homologous receiver domain
KE3_RS05005	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05010	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
KE3_RS05030	SM01130	KE3_RS05030
KE3_RS05035	SM00859	Semialdehyde dehydrogenase, NAD binding domain
KE3_RS05040	SM00155	Phospholipase D. Active site motifs.
KE3_RS05095	SM00434	DNA Topoisomerase IV
KE3_RS05120	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05130	SM01133	KE3_RS05130
KE3_RS05160	SM00387	Histidine kinase-like ATPases
KE3_RS05160	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS05165	SM00448	cheY-homologous receiver domain
KE3_RS05165	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS05180	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05185	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05245	SM00904	Riboflavin kinase
KE3_RS05280	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
KE3_RS05350	SM00387	Histidine kinase-like ATPases
KE3_RS05350	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS05355	SM00448	cheY-homologous receiver domain
KE3_RS05355	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS05365	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05465	SM00342	helix_turn_helix, arabinose operon control protein
KE3_RS05510	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05525	SM00905	Dihydroneopterin aldolase
KE3_RS05600	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05600	SM01086	C-terminal, D2-small domain, of ClpB protein
KE3_RS05625	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05625	SM00994	ClpX C4-type zinc finger
KE3_RS05625	SM01086	C-terminal, D2-small domain, of ClpB protein
KE3_RS05690	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS05695	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05710	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05725	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS05745	SM00387	Histidine kinase-like ATPases
KE3_RS05745	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS05750	SM00448	cheY-homologous receiver domain
KE3_RS05750	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS05755	SM00954	Region found in RelA / SpoT proteins
KE3_RS05760	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05765	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05770	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS05785	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
KE3_RS05815	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05820	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05830	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05855	SM00047	Lysozyme subfamily 2
KE3_RS05860	SM00861	Transketolase, pyrimidine binding domain
KE3_RS05885	SM00420	helix_turn_helix, Deoxyribose operon repressor
KE3_RS05885	SM01134	KE3_RS05885
KE3_RS05955	SM00382	ATPases associated with a variety of cellular activities
KE3_RS05965	SM00851	MGS-like domain
KE3_RS05965	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
KE3_RS05965	SM01209	KE3_RS05965
KE3_RS05970	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
KE3_RS05995	SM00363	S4 RNA-binding domain
KE3_RS06030	SM00854	Bacterial capsule synthesis protein PGA_cap
KE3_RS06035	SM00981	KE3_RS06035
KE3_RS06145	SM00641	Glycosyl hydrolases family 25
KE3_RS06220	SM00382	ATPases associated with a variety of cellular activities
KE3_RS06250	SM00400	zinc finger
KE3_RS06250	SM00493	KE3_RS06250
KE3_RS06270	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS06270	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
KE3_RS06280	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS06280	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
KE3_RS06285	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS06285	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
KE3_RS06300	SM00354	helix_turn _helix lactose operon repressor
KE3_RS06325	SM00487	DEAD-like helicases superfamily
KE3_RS06325	SM00490	helicase superfamily c-terminal domain
KE3_RS06330	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS06330	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
KE3_RS06335	SM00382	ATPases associated with a variety of cellular activities
KE3_RS06355	SM00363	S4 RNA-binding domain
KE3_RS06410	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS06430	SM00100	Cyclic nucleotide-monophosphate binding domain
KE3_RS06430	SM00419	helix_turn_helix, cAMP Regulatory protein
KE3_RS06465	SM00838	Elongation factor G C-terminus
KE3_RS06470	SM00562	KE3_RS06470
KE3_RS06525	SM00729	Elongator protein 3, MiaB family, Radical SAM
KE3_RS06555	SM01192	KE3_RS06555
KE3_RS06555	SM01193	KE3_RS06555
KE3_RS06570	SM00642	Alpha-amylase domain
KE3_RS06635	SM00387	Histidine kinase-like ATPases
KE3_RS06635	SM00433	TopoisomeraseII
KE3_RS06665	SM00830	Chorismate mutase type II
KE3_RS06705	SM00047	Lysozyme subfamily 2
KE3_RS06910	SM01040	BRO family, N-terminal domain
KE3_RS06970	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS06985	SM00857	Resolvase, N terminal domain
KE3_RS07060	SM00479	KE3_RS07060
KE3_RS07060	SM00491	KE3_RS07060
KE3_RS07065	SM00849	Metallo-beta-lactamase superfamily
KE3_RS07080	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07085	SM00937	KE3_RS07085
KE3_RS07095	SM00831	Cation transporter/ATPase, N-terminus
KE3_RS07110	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KE3_RS07165	SM00644	KE3_RS07165
KE3_RS07175	SM00855	Phosphoglycerate mutase family
KE3_RS07200	SM00448	cheY-homologous receiver domain
KE3_RS07200	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS07205	SM00387	Histidine kinase-like ATPases
KE3_RS07205	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS07210	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07270	SM00731	SprT homologues.
KE3_RS07275	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS07275	SM00732	Likely ribonuclease with RNase H fold.
KE3_RS07300	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07300	SM00962	SRP54-type protein, GTPase domain
KE3_RS07300	SM00963	SRP54-type protein, helical bundle domain
KE3_RS07320	SM00968	SMC proteins Flexible Hinge Domain
KE3_RS07325	SM00358	Double-stranded RNA binding motif
KE3_RS07325	SM00535	Ribonuclease III family
KE3_RS07330	SM00849	Metallo-beta-lactamase superfamily
KE3_RS07335	SM00091	PAS domain
KE3_RS07335	SM00387	Histidine kinase-like ATPases
KE3_RS07335	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS07340	SM00448	cheY-homologous receiver domain
KE3_RS07340	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS07345	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07350	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS07375	SM00387	Histidine kinase-like ATPases
KE3_RS07375	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS07380	SM00448	cheY-homologous receiver domain
KE3_RS07380	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS07410	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KE3_RS07430	SM00354	helix_turn _helix lactose operon repressor
KE3_RS07465	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS07475	SM00316	Ribosomal protein S1-like RNA-binding domain
KE3_RS07475	SM00955	KE3_RS07475
KE3_RS07495	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
KE3_RS07495	SM01232	KE3_RS07495
KE3_RS07570	SM00649	Ribosomal protein L11/L12
KE3_RS07580	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07580	SM00843	KE3_RS07580
KE3_RS07590	SM00529	Helix-turn-helix diphteria tox regulatory element
KE3_RS07590	SM00899	KE3_RS07590
KE3_RS07620	SM01022	KE3_RS07620
KE3_RS07655	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
KE3_RS07710	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS07750	SM00889	Elongation factor G, domain IV
KE3_RS07760	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS07785	SM00938	Nitrogen regulatory protein P-II
KE3_RS07820	SM00116	Domain in cystathionine beta-synthase and other proteins.
KE3_RS07825	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07830	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07900	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07945	SM01131	KE3_RS07945
KE3_RS07960	SM01091	Transporter associated domain
KE3_RS07970	SM00382	ATPases associated with a variety of cellular activities
KE3_RS07980	SM00729	Elongator protein 3, MiaB family, Radical SAM
KE3_RS07985	SM00014	Acid phosphatase homologues
KE3_RS08015	SM01234	KE3_RS08015
KE3_RS08020	SM00363	S4 RNA-binding domain
KE3_RS08040	SM00116	Domain in cystathionine beta-synthase and other proteins.
KE3_RS08080	SM00967	RNA 2'-O ribose methyltransferase substrate binding
KE3_RS08090	SM00640	Glycosyl hydrolases family 32
KE3_RS08095	SM00354	helix_turn _helix lactose operon repressor
KE3_RS08135	SM00487	DEAD-like helicases superfamily
KE3_RS08135	SM00490	helicase superfamily c-terminal domain
KE3_RS08160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
KE3_RS08160	SM00387	Histidine kinase-like ATPases
KE3_RS08160	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS08165	SM00448	cheY-homologous receiver domain
KE3_RS08165	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS08215	SM00382	ATPases associated with a variety of cellular activities
KE3_RS08250	SM00382	ATPases associated with a variety of cellular activities
KE3_RS08250	SM00930	KE3_RS08250
KE3_RS08260	SM00062	Bacterial periplasmic substrate-binding proteins
KE3_RS08305	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
KE3_RS08315	SM01103	KE3_RS08315
KE3_RS08340	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS08355	SM00845	GatB domain
KE3_RS08400	SM00870	KE3_RS08400
KE3_RS08405	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS08425	SM00487	DEAD-like helicases superfamily
KE3_RS08425	SM00490	helicase superfamily c-terminal domain
KE3_RS08430	SM01005	Alanine racemase, C-terminal domain
KE3_RS08450	SM00957	SecA DEAD-like domain
KE3_RS08450	SM00958	SecA preprotein cross-linking domain
KE3_RS08465	SM00640	Glycosyl hydrolases family 32
KE3_RS08470	SM00354	helix_turn _helix lactose operon repressor
KE3_RS08485	SM00841	Elongation factor P, C-terminal
KE3_RS08485	SM01185	KE3_RS08485
KE3_RS08510	SM00382	ATPases associated with a variety of cellular activities
KE3_RS08530	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS08580	SM00478	endonuclease III
KE3_RS08615	SM00014	Acid phosphatase homologues
KE3_RS08635	SM00463	Small MutS-related domain
KE3_RS08635	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
KE3_RS08635	SM00534	ATPase domain of DNA mismatch repair MUTS family
KE3_RS08660	SM00382	ATPases associated with a variety of cellular activities
KE3_RS08705	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
KE3_RS08705	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
KE3_RS08710	SM00091	PAS domain
KE3_RS08710	SM00387	Histidine kinase-like ATPases
KE3_RS08710	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS08715	SM00448	cheY-homologous receiver domain
KE3_RS08715	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS08725	SM00382	ATPases associated with a variety of cellular activities
KE3_RS08750	SM00422	helix_turn_helix, mercury resistance
KE3_RS08755	SM00479	KE3_RS08755
KE3_RS08780	SM00347	helix_turn_helix multiple antibiotic resistance protein
KE3_RS08805	SM00849	Metallo-beta-lactamase superfamily
KE3_RS08825	SM01230	KE3_RS08825
KE3_RS08830	SM00422	helix_turn_helix, mercury resistance
KE3_RS08850	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
KE3_RS08855	SM00838	Elongation factor G C-terminus
KE3_RS08855	SM00889	Elongation factor G, domain IV
KE3_RS08890	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
KE3_RS08935	SM00650	Ribosomal RNA adenine dimethylases
KE3_RS08940	SM00493	KE3_RS08940
KE3_RS08990	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09005	SM00919	Malic enzyme, NAD binding domain
KE3_RS09005	SM01274	KE3_RS09005
KE3_RS09040	SM00387	Histidine kinase-like ATPases
KE3_RS09040	SM00388	His Kinase A (phosphoacceptor) domain
KE3_RS09045	SM00448	cheY-homologous receiver domain
KE3_RS09045	SM00862	Transcriptional regulatory protein, C terminal
KE3_RS09050	SM00342	helix_turn_helix, arabinose operon control protein
KE3_RS09085	SM01068	Putative carbohydrate binding domain
KE3_RS09115	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09120	SM00393	Putative single-stranded nucleic acids-binding domain
KE3_RS09120	SM01245	KE3_RS09120
KE3_RS09165	SM00947	Carbonic anhydrase
KE3_RS09170	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09250	SM00849	Metallo-beta-lactamase superfamily
KE3_RS09275	SM00881	CoA binding domain
KE3_RS09280	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
KE3_RS09280	SM00474	3'-5' exonuclease
KE3_RS09280	SM00475	5'-3' exonuclease
KE3_RS09280	SM00482	DNA polymerase A domain
KE3_RS09295	SM00788	Adenylosuccinate synthetase
KE3_RS09330	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09330	SM01086	C-terminal, D2-small domain, of ClpB protein
KE3_RS09395	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS09460	SM00732	Likely ribonuclease with RNase H fold.
KE3_RS09475	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09480	SM00852	Probable molybdopterin binding domain
KE3_RS09495	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KE3_RS09500	SM00853	MutL C terminal dimerisation domain
KE3_RS09500	SM01340	KE3_RS09500
KE3_RS09505	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
KE3_RS09505	SM00534	ATPase domain of DNA mismatch repair MUTS family
KE3_RS09520	SM00836	DALR anticodon binding domain
KE3_RS09520	SM01016	Arginyl tRNA synthetase N terminal dom
KE3_RS09600	SM00530	Helix-turn-helix XRE-family like proteins 
KE3_RS09615	SM00046	Diacylglycerol kinase catalytic domain (presumed)
KE3_RS09690	SM00363	S4 RNA-binding domain
KE3_RS09690	SM01390	KE3_RS09690
KE3_RS09715	SM01228	KE3_RS09715
KE3_RS09745	SM00257	Lysin motif
KE3_RS09760	SM01040	BRO family, N-terminal domain
KE3_RS09830	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09835	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09875	SM00116	Domain in cystathionine beta-synthase and other proteins.
KE3_RS09875	SM01240	KE3_RS09875
KE3_RS09890	SM00382	ATPases associated with a variety of cellular activities
KE3_RS09930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KE3_RS09935	SM00470	ParB-like nuclease domain
KE3_RS10060	SM00530	Helix-turn-helix XRE-family like proteins 
