A4H00_RS00005	SM01192	A4H00_RS00005
A4H00_RS00005	SM01193	A4H00_RS00005
A4H00_RS00030	SM00387	Histidine kinase-like ATPases
A4H00_RS00030	SM00433	TopoisomeraseII
A4H00_RS00100	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4H00_RS00145	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS00230	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4H00_RS00240	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00250	SM00829	Enoylreductase
A4H00_RS00255	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00260	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00300	SM00642	Alpha-amylase domain
A4H00_RS00310	SM00642	Alpha-amylase domain
A4H00_RS00335	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS00345	SM00830	Chorismate mutase type II
A4H00_RS00370	SM00363	S4 RNA-binding domain
A4H00_RS00480	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS00485	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS00495	SM00954	Region found in RelA / SpoT proteins
A4H00_RS00540	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00555	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS00560	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4H00_RS00565	SM00563	Phosphate acyltransferases
A4H00_RS00575	SM00465	GIY-YIG type nucleases (URI domain)
A4H00_RS00585	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4H00_RS00585	SM00450	Rhodanese Homology Domain
A4H00_RS00590	SM00844	GA module
A4H00_RS00610	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00735	SM00731	SprT homologues.
A4H00_RS00740	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS00740	SM00732	Likely ribonuclease with RNase H fold.
A4H00_RS00790	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS00815	SM01329	A4H00_RS00815
A4H00_RS00820	SM00917	LeuA allosteric (dimerisation) domain
A4H00_RS00835	SM00487	DEAD-like helicases superfamily
A4H00_RS00835	SM00490	helicase superfamily c-terminal domain
A4H00_RS00850	SM00855	Phosphoglycerate mutase family
A4H00_RS00880	SM00411	bacterial (prokaryotic) histone like domain
A4H00_RS00915	SM00363	S4 RNA-binding domain
A4H00_RS00985	SM00450	Rhodanese Homology Domain
A4H00_RS01000	SM00421	helix_turn_helix, Lux Regulon
A4H00_RS01000	SM00448	cheY-homologous receiver domain
A4H00_RS01015	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01030	SM00226	Low molecular weight phosphatase family
A4H00_RS01035	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
A4H00_RS01055	SM00014	Acid phosphatase homologues
A4H00_RS01070	SM01234	A4H00_RS01070
A4H00_RS01075	SM00363	S4 RNA-binding domain
A4H00_RS01095	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4H00_RS01140	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A4H00_RS01180	SM00487	DEAD-like helicases superfamily
A4H00_RS01180	SM00490	helicase superfamily c-terminal domain
A4H00_RS01235	SM01350	A4H00_RS01235
A4H00_RS01255	SM00487	DEAD-like helicases superfamily
A4H00_RS01255	SM00490	helicase superfamily c-terminal domain
A4H00_RS01265	SM00740	A4H00_RS01265
A4H00_RS01280	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS01310	SM00900	A4H00_RS01310
A4H00_RS01370	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01370	SM00930	A4H00_RS01370
A4H00_RS01450	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01465	SM00487	DEAD-like helicases superfamily
A4H00_RS01465	SM00490	helicase superfamily c-terminal domain
A4H00_RS01590	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01610	SM00062	Bacterial periplasmic substrate-binding proteins
A4H00_RS01615	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01625	SM00244	prohibitin homologues
A4H00_RS01685	SM00173	Ras subfamily of RAS small GTPases
A4H00_RS01700	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS01700	SM00322	K homology RNA-binding domain
A4H00_RS01800	SM00878	Biotin carboxylase C-terminal domain
A4H00_RS01815	SM00825	Beta-ketoacyl synthase
A4H00_RS01820	SM00822	A4H00_RS01820
A4H00_RS01825	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A4H00_RS01845	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS01855	SM01133	A4H00_RS01855
A4H00_RS01865	SM01005	Alanine racemase, C-terminal domain
A4H00_RS01895	SM00640	Glycosyl hydrolases family 32
A4H00_RS01900	SM00354	helix_turn _helix lactose operon repressor
A4H00_RS01915	SM00841	Elongation factor P, C-terminal
A4H00_RS01915	SM01185	A4H00_RS01915
A4H00_RS01935	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS01990	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS02035	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02080	SM00062	Bacterial periplasmic substrate-binding proteins
A4H00_RS02110	SM00271	DnaJ molecular chaperone homology domain
A4H00_RS02150	SM00855	Phosphoglycerate mutase family
A4H00_RS02175	SM00422	helix_turn_helix, mercury resistance
A4H00_RS02215	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02215	SM01086	C-terminal, D2-small domain, of ClpB protein
A4H00_RS02310	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS02315	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS02325	SM00954	Region found in RelA / SpoT proteins
A4H00_RS02370	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A4H00_RS02410	SM00840	A4H00_RS02410
A4H00_RS02425	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS02425	SM00322	K homology RNA-binding domain
A4H00_RS02430	SM01387	A4H00_RS02430
A4H00_RS02470	SM00363	S4 RNA-binding domain
A4H00_RS02495	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS02510	SM00421	helix_turn_helix, Lux Regulon
A4H00_RS02510	SM00448	cheY-homologous receiver domain
A4H00_RS02525	SM00220	Serine/Threonine protein kinases, catalytic domain
A4H00_RS02525	SM00740	A4H00_RS02525
A4H00_RS02530	SM00331	Sigma factor PP2C-like phosphatases
A4H00_RS02530	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A4H00_RS02545	SM00487	DEAD-like helicases superfamily
A4H00_RS02545	SM00490	helicase superfamily c-terminal domain
A4H00_RS02550	SM01409	A4H00_RS02550
A4H00_RS02555	SM00072	Guanylate kinase homologues.
A4H00_RS02560	SM00322	K homology RNA-binding domain
A4H00_RS02560	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4H00_RS02585	SM00981	A4H00_RS02585
A4H00_RS02625	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02650	SM00450	Rhodanese Homology Domain
A4H00_RS02680	SM00861	Transketolase, pyrimidine binding domain
A4H00_RS02695	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02710	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02715	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS02745	SM00640	Glycosyl hydrolases family 32
A4H00_RS02765	SM00354	helix_turn _helix lactose operon repressor
A4H00_RS02770	SM01120	A4H00_RS02770
A4H00_RS02770	SM01121	A4H00_RS02770
A4H00_RS02845	SM01038	Beta galactosidase small chain
A4H00_RS02890	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A4H00_RS02890	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4H00_RS02945	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A4H00_RS02960	SM00650	Ribosomal RNA adenine dimethylases
A4H00_RS02970	SM00493	A4H00_RS02970
A4H00_RS02985	SM00393	Putative single-stranded nucleic acids-binding domain
A4H00_RS02985	SM01245	A4H00_RS02985
A4H00_RS03010	SM00422	helix_turn_helix, mercury resistance
A4H00_RS03045	SM00850	LytTr DNA-binding domain
A4H00_RS03060	SM00947	Carbonic anhydrase
A4H00_RS03065	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03080	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03085	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03105	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03140	SM00861	Transketolase, pyrimidine binding domain
A4H00_RS03155	SM01007	Class II Aldolase and Adducin N-terminal domain
A4H00_RS03165	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4H00_RS03215	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS03235	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03250	SM00529	Helix-turn-helix diphteria tox regulatory element
A4H00_RS03265	SM00220	Serine/Threonine protein kinases, catalytic domain
A4H00_RS03280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4H00_RS03280	SM00954	Region found in RelA / SpoT proteins
A4H00_RS03290	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03295	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4H00_RS03385	SM00883	Chaperonin 10 Kd subunit
A4H00_RS03470	SM00732	Likely ribonuclease with RNase H fold.
A4H00_RS03485	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03490	SM00852	Probable molybdopterin binding domain
A4H00_RS03500	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS03510	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4H00_RS03515	SM00853	MutL C terminal dimerisation domain
A4H00_RS03515	SM01340	A4H00_RS03515
A4H00_RS03530	SM00850	LytTr DNA-binding domain
A4H00_RS03540	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4H00_RS03540	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4H00_RS03550	SM00836	DALR anticodon binding domain
A4H00_RS03550	SM01016	Arginyl tRNA synthetase N terminal dom
A4H00_RS03560	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS03570	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03575	SM00220	Serine/Threonine protein kinases, catalytic domain
A4H00_RS03575	SM01260	A4H00_RS03575
A4H00_RS03585	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS03615	SM00354	helix_turn _helix lactose operon repressor
A4H00_RS03620	SM00642	Alpha-amylase domain
A4H00_RS03660	SM01217	A4H00_RS03660
A4H00_RS03670	SM01217	A4H00_RS03670
A4H00_RS03700	SM00448	cheY-homologous receiver domain
A4H00_RS03700	SM00850	LytTr DNA-binding domain
A4H00_RS03720	SM00363	S4 RNA-binding domain
A4H00_RS03720	SM01390	A4H00_RS03720
A4H00_RS03735	SM01321	A4H00_RS03735
A4H00_RS03760	SM01228	A4H00_RS03760
A4H00_RS03790	SM00257	Lysin motif
A4H00_RS03800	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03805	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03845	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4H00_RS03845	SM01240	A4H00_RS03845
A4H00_RS03860	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03900	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4H00_RS03905	SM00470	ParB-like nuclease domain
A4H00_RS03910	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS03910	SM00760	Bacterial dnaA protein helix-turn-helix domain
A4H00_RS03915	SM00480	DNA polymerase III beta subunit
A4H00_RS03920	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A4H00_RS03945	SM00487	DEAD-like helicases superfamily
A4H00_RS03945	SM00490	helicase superfamily c-terminal domain
A4H00_RS03945	SM00982	A4H00_RS03945
A4H00_RS03945	SM01058	CarD-like/TRCF domain
A4H00_RS03950	SM00363	S4 RNA-binding domain
A4H00_RS03965	SM00977	TilS substrate C-terminal domain
A4H00_RS03975	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS04105	SM01400	A4H00_RS04105
A4H00_RS04125	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS04160	SM01211	A4H00_RS04160
A4H00_RS04185	SM00798	AICARFT/IMPCHase bienzyme
A4H00_RS04185	SM00851	MGS-like domain
A4H00_RS04205	SM01209	A4H00_RS04205
A4H00_RS04205	SM01210	A4H00_RS04205
A4H00_RS04210	SM01001	AIR carboxylase
A4H00_RS04230	SM00998	Adenylosuccinate lyase C-terminus
A4H00_RS04235	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS04255	SM01403	A4H00_RS04255
A4H00_RS04275	SM01382	A4H00_RS04275
A4H00_RS04275	SM01383	A4H00_RS04275
A4H00_RS04290	SM00322	K homology RNA-binding domain
A4H00_RS04310	SM01374	A4H00_RS04310
A4H00_RS04315	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4H00_RS04365	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS04380	SM00662	RNA polymerases D
A4H00_RS04490	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS04495	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS04525	SM00363	S4 RNA-binding domain
A4H00_RS04540	SM00663	RNA polymerase I subunit A N-terminus
A4H00_RS04560	SM00838	Elongation factor G C-terminus
A4H00_RS04560	SM00889	Elongation factor G, domain IV
A4H00_RS04600	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A4H00_RS04615	SM00422	helix_turn_helix, mercury resistance
A4H00_RS04620	SM01230	A4H00_RS04620
A4H00_RS04625	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS04640	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS04675	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS04690	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS04705	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS04765	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS04815	SM00470	ParB-like nuclease domain
A4H00_RS04980	SM00287	Bacterial SH3 domain homologues
A4H00_RS05025	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05090	SM00861	Transketolase, pyrimidine binding domain
A4H00_RS05100	SM00448	cheY-homologous receiver domain
A4H00_RS05100	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS05105	SM00387	Histidine kinase-like ATPases
A4H00_RS05105	SM00388	His Kinase A (phosphoacceptor) domain
A4H00_RS05110	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05160	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A4H00_RS05160	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
A4H00_RS05240	SM00463	Small MutS-related domain
A4H00_RS05240	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4H00_RS05240	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4H00_RS05245	SM01208	A4H00_RS05245
A4H00_RS05275	SM00900	A4H00_RS05275
A4H00_RS05295	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS05320	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A4H00_RS05330	SM00854	Bacterial capsule synthesis protein PGA_cap
A4H00_RS05355	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05430	SM01130	A4H00_RS05430
A4H00_RS05490	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05495	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05540	SM01130	A4H00_RS05540
A4H00_RS05580	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS05640	SM00788	Adenylosuccinate synthetase
A4H00_RS05660	SM01323	A4H00_RS05660
A4H00_RS05690	SM01120	A4H00_RS05690
A4H00_RS05715	SM00479	A4H00_RS05715
A4H00_RS05715	SM00481	DNA polymerase alpha chain like domain
A4H00_RS05725	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05770	SM00487	DEAD-like helicases superfamily
A4H00_RS05770	SM00490	helicase superfamily c-terminal domain
A4H00_RS05785	SM00936	Penicillin-binding protein 5, C-terminal domain 
A4H00_RS05800	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05805	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05905	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS05920	SM00448	cheY-homologous receiver domain
A4H00_RS05920	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS05925	SM00387	Histidine kinase-like ATPases
A4H00_RS05925	SM00388	His Kinase A (phosphoacceptor) domain
A4H00_RS05935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS05935	SM00866	A4H00_RS05935
A4H00_RS05940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS05940	SM00866	A4H00_RS05940
A4H00_RS06005	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06015	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS06040	SM00506	Appr-1"-p processing enzyme
A4H00_RS06075	SM00870	A4H00_RS06075
A4H00_RS06115	SM00845	GatB domain
A4H00_RS06120	SM00422	helix_turn_helix, mercury resistance
A4H00_RS06125	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06130	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4H00_RS06135	SM00354	helix_turn _helix lactose operon repressor
A4H00_RS06170	SM01103	A4H00_RS06170
A4H00_RS06180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4H00_RS06210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS06210	SM00866	A4H00_RS06210
A4H00_RS06240	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06260	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06265	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06295	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS06305	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06310	SM00881	CoA binding domain
A4H00_RS06395	SM00838	Elongation factor G C-terminus
A4H00_RS06420	SM00842	Cell division protein FtsA
A4H00_RS06425	SM00864	Tubulin/FtsZ family, GTPase domain
A4H00_RS06425	SM00865	Tubulin/FtsZ family, C-terminal domain
A4H00_RS06445	SM00363	S4 RNA-binding domain
A4H00_RS06475	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06475	SM01086	C-terminal, D2-small domain, of ClpB protein
A4H00_RS06490	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06510	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4H00_RS06530	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS06540	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06545	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06555	SM01091	Transporter associated domain
A4H00_RS06580	SM01131	A4H00_RS06580
A4H00_RS06590	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06605	SM00448	cheY-homologous receiver domain
A4H00_RS06605	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS06610	SM00387	Histidine kinase-like ATPases
A4H00_RS06615	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06635	SM01022	A4H00_RS06635
A4H00_RS06700	SM00957	SecA DEAD-like domain
A4H00_RS06700	SM00958	SecA preprotein cross-linking domain
A4H00_RS06735	SM00257	Lysin motif
A4H00_RS06740	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06740	SM00843	A4H00_RS06740
A4H00_RS06755	SM00649	Ribosomal protein L11/L12
A4H00_RS06860	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06865	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS06870	SM01321	A4H00_RS06870
A4H00_RS06940	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A4H00_RS06940	SM01232	A4H00_RS06940
A4H00_RS06960	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS06960	SM00357	Cold shock protein domain
A4H00_RS06960	SM00955	A4H00_RS06960
A4H00_RS06970	SM00736	Dystroglycan-type cadherin-like domains.
A4H00_RS06995	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07025	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A4H00_RS07025	SM00474	3'-5' exonuclease
A4H00_RS07025	SM00475	5'-3' exonuclease
A4H00_RS07025	SM00482	DNA polymerase A domain
A4H00_RS07035	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07090	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS07150	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4H00_RS07160	SM00829	Enoylreductase
A4H00_RS07180	SM00487	DEAD-like helicases superfamily
A4H00_RS07180	SM00490	helicase superfamily c-terminal domain
A4H00_RS07245	SM00448	cheY-homologous receiver domain
A4H00_RS07245	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS07250	SM00091	PAS domain
A4H00_RS07250	SM00387	Histidine kinase-like ATPases
A4H00_RS07250	SM00388	His Kinase A (phosphoacceptor) domain
A4H00_RS07255	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS07260	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07270	SM00493	A4H00_RS07270
A4H00_RS07315	SM00487	DEAD-like helicases superfamily
A4H00_RS07315	SM00490	helicase superfamily c-terminal domain
A4H00_RS07325	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS07420	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07425	SM00448	cheY-homologous receiver domain
A4H00_RS07425	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS07430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4H00_RS07430	SM00387	Histidine kinase-like ATPases
A4H00_RS07430	SM00388	His Kinase A (phosphoacceptor) domain
A4H00_RS07460	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07480	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07520	SM00155	Phospholipase D. Active site motifs.
A4H00_RS07595	SM00937	A4H00_RS07595
A4H00_RS07600	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07620	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS07625	SM00479	A4H00_RS07625
A4H00_RS07625	SM00491	A4H00_RS07625
A4H00_RS07665	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A4H00_RS07690	SM00450	Rhodanese Homology Domain
A4H00_RS07730	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4H00_RS07810	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07810	SM00962	SRP54-type protein, GTPase domain
A4H00_RS07810	SM00963	SRP54-type protein, helical bundle domain
A4H00_RS07830	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4H00_RS07830	SM00292	breast cancer carboxy-terminal domain
A4H00_RS07830	SM00532	Ligase N family
A4H00_RS07835	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A4H00_RS07875	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS07900	SM00892	DNA/RNA non-specific endonuclease
A4H00_RS07925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS07925	SM00895	A4H00_RS07925
A4H00_RS07975	SM00873	B3/4 domain
A4H00_RS07975	SM00874	tRNA synthetase B5 domain
A4H00_RS07975	SM00896	Ferredoxin-fold anticodon binding domain
A4H00_RS08060	SM00641	Glycosyl hydrolases family 25
A4H00_RS08090	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4H00_RS08105	SM00831	Cation transporter/ATPase, N-terminus
A4H00_RS08145	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08235	SM00028	Tetratricopeptide repeats
A4H00_RS08270	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08290	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS08290	SM00448	cheY-homologous receiver domain
A4H00_RS08295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4H00_RS08335	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS08345	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08355	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08365	SM00838	Elongation factor G C-terminus
A4H00_RS08380	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08385	SM00062	Bacterial periplasmic substrate-binding proteins
A4H00_RS08385	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4H00_RS08395	SM00487	DEAD-like helicases superfamily
A4H00_RS08395	SM00490	helicase superfamily c-terminal domain
A4H00_RS08510	SM00062	Bacterial periplasmic substrate-binding proteins
A4H00_RS08510	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4H00_RS08550	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4H00_RS08570	SM00986	Uracil DNA glycosylase superfamily
A4H00_RS08570	SM00987	UreE urease accessory protein, C-terminal domain 
A4H00_RS08585	SM01207	A4H00_RS08585
A4H00_RS08590	SM00387	Histidine kinase-like ATPases
A4H00_RS08590	SM00433	TopoisomeraseII
A4H00_RS08595	SM00434	DNA Topoisomerase IV
A4H00_RS08620	SM00316	Ribosomal protein S1-like RNA-binding domain
A4H00_RS08645	SM00981	A4H00_RS08645
A4H00_RS08675	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS08680	SM00640	Glycosyl hydrolases family 32
A4H00_RS08690	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08695	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08740	SM00904	Riboflavin kinase
A4H00_RS08785	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08790	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08800	SM00448	cheY-homologous receiver domain
A4H00_RS08800	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS08830	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4H00_RS08830	SM01134	A4H00_RS08830
A4H00_RS08865	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS08890	SM00363	S4 RNA-binding domain
A4H00_RS08920	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A4H00_RS08925	SM00851	MGS-like domain
A4H00_RS08925	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A4H00_RS08925	SM01209	A4H00_RS08925
A4H00_RS08985	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A4H00_RS08990	SM01133	A4H00_RS08990
A4H00_RS09005	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09025	SM00434	DNA Topoisomerase IV
A4H00_RS09045	SM00881	CoA binding domain
A4H00_RS09065	SM01400	A4H00_RS09065
A4H00_RS09070	SM01118	A4H00_RS09070
A4H00_RS09075	SM00954	Region found in RelA / SpoT proteins
A4H00_RS09095	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09100	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09105	SM00478	endonuclease III
A4H00_RS09170	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4H00_RS09175	SM01130	A4H00_RS09175
A4H00_RS09180	SM00422	helix_turn_helix, mercury resistance
A4H00_RS09185	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09225	SM00450	Rhodanese Homology Domain
A4H00_RS09240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4H00_RS09240	SM00450	Rhodanese Homology Domain
A4H00_RS09265	SM00829	Enoylreductase
A4H00_RS09305	SM00857	Resolvase, N terminal domain
A4H00_RS09380	SM00882	Coenzyme A transferase
A4H00_RS09385	SM00882	Coenzyme A transferase
A4H00_RS09400	SM00849	Metallo-beta-lactamase superfamily
A4H00_RS09445	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS09495	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS09520	SM01266	A4H00_RS09520
A4H00_RS09530	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A4H00_RS09530	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A4H00_RS09530	SM00493	A4H00_RS09530
A4H00_RS09540	SM00422	helix_turn_helix, mercury resistance
A4H00_RS09560	SM01061	CAT RNA binding domain
A4H00_RS09590	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09600	SM00448	cheY-homologous receiver domain
A4H00_RS09600	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS09635	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09635	SM00962	SRP54-type protein, GTPase domain
A4H00_RS09635	SM00963	SRP54-type protein, helical bundle domain
A4H00_RS09645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS09645	SM00866	A4H00_RS09645
A4H00_RS09690	SM00937	A4H00_RS09690
A4H00_RS09710	SM00387	Histidine kinase-like ATPases
A4H00_RS09710	SM00388	His Kinase A (phosphoacceptor) domain
A4H00_RS09715	SM00448	cheY-homologous receiver domain
A4H00_RS09715	SM00862	Transcriptional regulatory protein, C terminal
A4H00_RS09730	SM01240	A4H00_RS09730
A4H00_RS09735	SM00478	endonuclease III
A4H00_RS09740	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09755	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS09775	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS09820	SM00890	Domain of unknown function
A4H00_RS09825	SM00877	A4H00_RS09825
A4H00_RS09830	SM00877	A4H00_RS09830
A4H00_RS09835	SM00877	A4H00_RS09835
A4H00_RS09850	SM00877	A4H00_RS09850
A4H00_RS09865	SM00842	Cell division protein FtsA
A4H00_RS09885	SM00877	A4H00_RS09885
A4H00_RS09905	SM00877	A4H00_RS09905
A4H00_RS09910	SM00877	A4H00_RS09910
A4H00_RS09925	SM00877	A4H00_RS09925
A4H00_RS09930	SM00422	helix_turn_helix, mercury resistance
A4H00_RS09940	SM01007	Class II Aldolase and Adducin N-terminal domain
A4H00_RS09955	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS09980	SM01217	A4H00_RS09980
A4H00_RS09990	SM00448	cheY-homologous receiver domain
A4H00_RS09990	SM00850	LytTr DNA-binding domain
A4H00_RS10055	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS10140	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS10155	SM01217	A4H00_RS10155
A4H00_RS10165	SM00342	helix_turn_helix, arabinose operon control protein
A4H00_RS10180	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS10205	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10225	SM00062	Bacterial periplasmic substrate-binding proteins
A4H00_RS10230	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10285	SM00481	DNA polymerase alpha chain like domain
A4H00_RS10290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4H00_RS10295	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10305	SM00642	Alpha-amylase domain
A4H00_RS10335	SM00287	Bacterial SH3 domain homologues
A4H00_RS10500	SM00507	HNH nucleases
A4H00_RS10610	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS10620	SM00530	Helix-turn-helix XRE-family like proteins 
A4H00_RS10655	SM00400	zinc finger
A4H00_RS10655	SM00493	A4H00_RS10655
A4H00_RS10740	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10755	SM00448	cheY-homologous receiver domain
A4H00_RS10755	SM00850	LytTr DNA-binding domain
A4H00_RS10760	SM00850	LytTr DNA-binding domain
A4H00_RS10780	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4H00_RS10825	SM00986	Uracil DNA glycosylase superfamily
A4H00_RS10825	SM00987	UreE urease accessory protein, C-terminal domain 
A4H00_RS10835	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10865	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS10875	SM00465	GIY-YIG type nucleases (URI domain)
A4H00_RS10895	SM00974	A4H00_RS10895
A4H00_RS10920	SM00450	Rhodanese Homology Domain
A4H00_RS10965	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS11015	SM00421	helix_turn_helix, Lux Regulon
A4H00_RS11015	SM00448	cheY-homologous receiver domain
A4H00_RS11030	SM00382	ATPases associated with a variety of cellular activities
A4H00_RS11035	SM00968	SMC proteins Flexible Hinge Domain
A4H00_RS11040	SM00358	Double-stranded RNA binding motif
A4H00_RS11040	SM00535	Ribonuclease III family
A4H00_RS11170	SM00382	ATPases associated with a variety of cellular activities
