locus-tag class description smi_0001 PF00308 Bacterial dnaA protein smi_0001 PF08299 Bacterial dnaA protein helix-turn-helix smi_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain smi_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain smi_0002 PF02767 DNA polymerase III beta subunit, central domain smi_0004 PF06071 Protein of unknown function (DUF933) smi_0004 PF01926 50S ribosome-binding GTPase smi_0005 PF01195 Peptidyl-tRNA hydrolase smi_0006 PF02559 CarD-like/TRCF domain smi_0006 PF03461 TRCF domain smi_0006 PF00271 Helicase conserved C-terminal domain smi_0006 PF00270 DEAD/DEAH box helicase smi_0006 PF17757 UvrB interaction domain smi_0007 PF01479 S4 domain smi_0010 PF11734 TilS substrate C-terminal domain smi_0010 PF01171 PP-loop family smi_0011 PF00156 Phosphoribosyl transferase domain smi_0012 PF17862 AAA+ lid domain smi_0012 PF06480 FtsH Extracellular smi_0012 PF00004 ATPase family associated with various cellular activities (AAA) smi_0012 PF01434 Peptidase family M41 smi_0014 PF00665 Integrase core domain smi_0014 PF13936 Helix-turn-helix domain smi_0022 PF00709 Adenylosuccinate synthetase smi_0024 PF14437 MafB19-like deaminase smi_0026 PF00692 dUTPase smi_0029 PF01987 Mitochondrial biogenesis AIM24 smi_0030 PF00484 Carbonic anhydrase smi_0032 PF13936 Helix-turn-helix domain smi_0032 PF00665 Integrase core domain smi_0033 PF14572 Phosphoribosyl synthetase-associated domain smi_0033 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase smi_0041 PF13817 IS66 C-terminal element smi_0041 PF03050 Transposase IS66 family smi_0041 PF13005 zinc-finger binding domain of transposase IS66 smi_0041 PF13007 Transposase C of IS166 homeodomain smi_0042 PF13936 Helix-turn-helix domain smi_0042 PF00665 Integrase core domain smi_0046 PF13358 DDE superfamily endonuclease smi_0048 PF01367 5'-3' exonuclease, C-terminal SAM fold smi_0048 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain smi_0048 PF00476 DNA polymerase family A smi_0049 PF13380 CoA binding domain smi_0050 PF03601 Conserved hypothetical protein 698 smi_0051 PF00155 Aminotransferase class I and II smi_0052 PF02565 Recombination protein O C terminal smi_0052 PF11967 Recombination protein O N terminal smi_0053 PF02504 Fatty acid synthesis protein smi_0054 PF00550 Phosphopantetheine attachment site smi_0064 PF00664 ABC transporter transmembrane region smi_0064 PF03412 Peptidase C39 family smi_0064 PF00005 ABC transporter smi_0066 PF01259 SAICAR synthetase smi_0067 PF02769 AIR synthase related protein, C-terminal domain smi_0067 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain smi_0067 PF00586 AIR synthase related protein, N-terminal domain smi_0068 PF00156 Phosphoribosyl transferase domain smi_0069 PF02769 AIR synthase related protein, C-terminal domain smi_0069 PF00586 AIR synthase related protein, N-terminal domain smi_0070 PF00551 Formyl transferase smi_0072 PF01808 AICARFT/IMPCHase bienzyme smi_0072 PF02142 MGS-like domain smi_0073 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain smi_0073 PF02844 Phosphoribosylglycinamide synthetase, N domain smi_0073 PF02843 Phosphoribosylglycinamide synthetase, C domain smi_0074 PF00731 AIR carboxylase smi_0075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain smi_0075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain smi_0075 PF02222 ATP-grasp domain smi_0076 PF10397 Adenylosuccinate lyase C-terminus smi_0076 PF00206 Lyase smi_0077 PF13683 Integrase core domain smi_0077 PF01610 Transposase smi_0078 PF00392 Bacterial regulatory proteins, gntR family smi_0078 PF07702 UTRA domain smi_0079 PF01301 Glycosyl hydrolases family 35 smi_0080 PF03830 PTS system sorbose subfamily IIB component smi_0081 PF03609 PTS system sorbose-specific iic component smi_0082 PF03613 PTS system mannose/fructose/sorbose family IID component smi_0084 PF01380 SIS domain smi_0088 PF02386 Cation transport protein smi_0089 PF02254 TrkA-N domain smi_0089 PF02080 TrkA-C domain smi_0090 PF00535 Glycosyl transferase family 2 smi_0092 PF00072 Response regulator receiver domain smi_0092 PF00486 Transcriptional regulatory protein, C terminal smi_0093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0093 PF00512 His Kinase A (phospho-acceptor) domain smi_0094 PF00163 Ribosomal protein S4/S9 N-terminal domain smi_0094 PF01479 S4 domain smi_0103 PF01022 Bacterial regulatory protein, arsR family smi_0105 PF00471 Ribosomal protein L33 smi_0106 PF01783 Ribosomal L32p protein family smi_0107 PF13936 Helix-turn-helix domain smi_0107 PF00665 Integrase core domain smi_0108 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 smi_0110 PF03611 PTS system sugar-specific permease component smi_0111 PF00456 Transketolase, thiamine diphosphate binding domain smi_0112 PF13292 1-deoxy-D-xylulose-5-phosphate synthase smi_0112 PF02779 Transketolase, pyrimidine binding domain smi_0112 PF02780 Transketolase, C-terminal domain smi_0113 PF00920 Dehydratase family smi_0114 PF01883 Iron-sulfur cluster assembly protein smi_0118 PF13393 Histidyl-tRNA synthetase smi_0118 PF03129 Anticodon binding domain smi_0120 PF01381 Helix-turn-helix smi_0123 PF00005 ABC transporter smi_0127 PF02938 GAD domain smi_0127 PF01336 OB-fold nucleic acid binding domain smi_0127 PF00152 tRNA synthetases class II (D, K and N) smi_0128 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 smi_0128 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) smi_0129 PF00356 Bacterial regulatory proteins, lacI family smi_0129 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family smi_0131 PF00528 Binding-protein-dependent transport system inner membrane component smi_0132 PF00528 Binding-protein-dependent transport system inner membrane component smi_0133 PF13416 Bacterial extracellular solute-binding protein smi_0134 PF02446 4-alpha-glucanotransferase smi_0135 PF00343 Carbohydrate phosphorylase smi_0136 PF13847 Methyltransferase domain smi_0138 PF00403 Heavy-metal-associated domain smi_0139 PF01479 S4 domain smi_0139 PF00579 tRNA synthetases class I (W and Y) smi_0140 PF13936 Helix-turn-helix domain smi_0140 PF00665 Integrase core domain smi_0142 PF00892 EamA-like transporter family smi_0143 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal smi_0143 PF00132 Bacterial transferase hexapeptide (six repeats) smi_0143 PF14602 Hexapeptide repeat of succinyl-transferase smi_0144 PF01546 Peptidase family M20/M25/M40 smi_0144 PF07687 Peptidase dimerisation domain smi_0145 PF01812 5-formyltetrahydrofolate cyclo-ligase family smi_0147 PF00483 Nucleotidyl transferase smi_0148 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus smi_0148 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus smi_0150 PF00750 tRNA synthetases class I (R) smi_0150 PF03485 Arginyl tRNA synthetase N terminal domain smi_0150 PF05746 DALR anticodon binding domain smi_0151 PF02863 Arginine repressor, C-terminal domain smi_0151 PF01316 Arginine repressor, DNA binding domain smi_0152 PF00488 MutS domain V smi_0152 PF05190 MutS family domain IV smi_0152 PF05192 MutS domain III smi_0152 PF05188 MutS domain II smi_0152 PF01624 MutS domain I smi_0153 PF00664 ABC transporter transmembrane region smi_0153 PF00005 ABC transporter smi_0154 PF00664 ABC transporter transmembrane region smi_0154 PF00005 ABC transporter smi_0155 PF07722 Peptidase C26 smi_0156 PF01797 Transposase IS200 like smi_0157 PF00342 Phosphoglucose isomerase smi_0158 PF00749 tRNA synthetases class I (E and Q), catalytic domain smi_0159 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region smi_0179 PF02824 TGS domain smi_0179 PF04607 Region found in RelA / SpoT proteins smi_0179 PF13291 ACT domain smi_0180 PF00589 Phage integrase family smi_0180 PF14659 Phage integrase, N-terminal SAM-like domain smi_0193 PF14821 Threonine synthase N terminus smi_0193 PF00291 Pyridoxal-phosphate dependent enzyme smi_0194 PF01554 MatE smi_0195 PF13419 Haloacid dehalogenase-like hydrolase smi_0197 PF01470 Pyroglutamyl peptidase smi_0199 PF01702 Queuine tRNA-ribosyltransferase smi_0200 PF01757 Acyltransferase family smi_0201 PF00665 Integrase core domain smi_0201 PF13936 Helix-turn-helix domain smi_0202 PF01979 Amidohydrolase family smi_0203 PF00107 Zinc-binding dehydrogenase smi_0203 PF13823 Alcohol dehydrogenase GroES-associated smi_0203 PF08240 Alcohol dehydrogenase GroES-like domain smi_0205 PF00437 Type II/IV secretion system protein smi_0206 PF00482 Type II secretion system (T2SS), protein F smi_0207 PF07963 Prokaryotic N-terminal methylation motif smi_0214 PF00871 Acetokinase family smi_0215 PF00825 Ribonuclease P smi_0216 PF02096 60Kd inner membrane protein smi_0219 PF03611 PTS system sugar-specific permease component smi_0220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit smi_0221 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 smi_0222 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family smi_0223 PF01261 Xylose isomerase-like TIM barrel smi_0224 PF00596 Class II Aldolase and Adducin N-terminal domain smi_0227 PF02780 Transketolase, C-terminal domain smi_0227 PF02779 Transketolase, pyrimidine binding domain smi_0227 PF00456 Transketolase, thiamine diphosphate binding domain smi_0229 PF01451 Low molecular weight phosphotyrosine protein phosphatase smi_0231 PF00171 Aldehyde dehydrogenase family smi_0231 PF00465 Iron-containing alcohol dehydrogenase smi_0232 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain smi_0232 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain smi_0233 PF00849 RNA pseudouridylate synthase smi_0234 PF00905 Penicillin binding protein transpeptidase domain smi_0234 PF00912 Transglycosylase smi_0235 PF00665 Integrase core domain smi_0235 PF13936 Helix-turn-helix domain smi_0236 PF00471 Ribosomal protein L33 smi_0238 PF00467 KOW motif smi_0238 PF02357 Transcription termination factor nusG smi_0240 PF13936 Helix-turn-helix domain smi_0240 PF00665 Integrase core domain smi_0256 PF00005 ABC transporter smi_0258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0258 PF07730 Histidine kinase smi_0259 PF00072 Response regulator receiver domain smi_0259 PF00196 Bacterial regulatory proteins, luxR family smi_0260 PF00665 Integrase core domain smi_0260 PF13936 Helix-turn-helix domain smi_0261 PF00164 Ribosomal protein S12/S23 smi_0262 PF00177 Ribosomal protein S7p/S5e smi_0263 PF03764 Elongation factor G, domain IV smi_0263 PF14492 Elongation Factor G, domain II smi_0263 PF00679 Elongation factor G C-terminus smi_0263 PF00009 Elongation factor Tu GTP binding domain smi_0263 PF03144 Elongation factor Tu domain 2 smi_0264 PF11490 DNA polymerase III polC-type N-terminus II smi_0264 PF14480 DNA polymerase III polC-type N-terminus I smi_0264 PF07733 Bacterial DNA polymerase III alpha NTPase domain smi_0264 PF17657 Bacterial DNA polymerase III alpha subunit finger domain smi_0264 PF02811 PHP domain smi_0264 PF00929 Exonuclease smi_0265 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ smi_0266 PF02073 Thermophilic metalloprotease (M29) smi_0267 PF01479 S4 domain smi_0267 PF00849 RNA pseudouridylate synthase smi_0268 PF03051 Peptidase C1-like family smi_0269 PF13683 Integrase core domain smi_0269 PF01610 Transposase smi_0272 PF03613 PTS system mannose/fructose/sorbose family IID component smi_0273 PF03609 PTS system sorbose-specific iic component smi_0274 PF03610 PTS system fructose IIA component smi_0274 PF03830 PTS system sorbose subfamily IIB component smi_0275 PF00107 Zinc-binding dehydrogenase smi_0275 PF08240 Alcohol dehydrogenase GroES-like domain smi_0277 PF00860 Permease family smi_0279 PF00809 Pterin binding enzyme smi_0280 PF02875 Mur ligase family, glutamate ligase domain smi_0280 PF08245 Mur ligase middle domain smi_0281 PF01227 GTP cyclohydrolase I smi_0282 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) smi_0282 PF02152 Dihydroneopterin aldolase smi_0284 PF00356 Bacterial regulatory proteins, lacI family smi_0285 PF17763 Glutaminase/Asparaginase C-terminal domain smi_0285 PF00710 Asparaginase, N-terminal smi_0287 PF00582 Universal stress protein family smi_0289 PF00155 Aminotransferase class I and II smi_0290 PF00468 Ribosomal protein L34 smi_0291 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_0292 PF13520 Amino acid permease smi_0293 PF01026 TatD related DNase smi_0294 PF13331 Domain of unknown function (DUF4093) smi_0295 PF00398 Ribosomal RNA adenine dimethylase smi_0296 PF03193 RsgA GTPase smi_0296 PF16745 RsgA N-terminal domain smi_0297 PF00834 Ribulose-phosphate 3 epimerase family smi_0298 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain smi_0298 PF04263 Thiamin pyrophosphokinase, catalytic domain smi_0299 PF02646 RmuC family smi_0300 PF01336 OB-fold nucleic acid binding domain smi_0300 PF01966 HD domain smi_0301 PF00665 Integrase core domain smi_0301 PF13936 Helix-turn-helix domain smi_0302 PF00156 Phosphoribosyl transferase domain smi_0302 PF09182 Bacterial purine repressor, N-terminal smi_0303 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain smi_0303 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain smi_0304 PF04055 Radical SAM superfamily smi_0305 PF00005 ABC transporter smi_0308 PF00072 Response regulator receiver domain smi_0308 PF00486 Transcriptional regulatory protein, C terminal smi_0309 PF00512 His Kinase A (phospho-acceptor) domain smi_0309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0310 PF02096 60Kd inner membrane protein smi_0311 PF08032 RNA 2'-O ribose methyltransferase substrate binding smi_0311 PF00588 SpoU rRNA Methylase family smi_0312 PF01027 Inhibitor of apoptosis-promoting Bax1 smi_0313 PF03590 Aspartate-ammonia ligase smi_0315 PF01467 Cytidylyltransferase-like smi_0316 PF05362 Lon protease (S16) C-terminal proteolytic domain smi_0316 PF13180 PDZ domain smi_0317 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) smi_0318 PF11772 DNA-directed RNA polymerase subunit beta smi_0319 PF01223 DNA/RNA non-specific endonuclease smi_0320 PF00571 CBS domain smi_0320 PF03471 Transporter associated domain smi_0320 PF01595 Cyclin M transmembrane N-terminal domain smi_0322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_0323 PF00528 Binding-protein-dependent transport system inner membrane component smi_0324 PF00528 Binding-protein-dependent transport system inner membrane component smi_0324 PF12911 N-terminal TM domain of oligopeptide transport permease C smi_0325 PF00005 ABC transporter smi_0325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region smi_0326 PF08352 Oligopeptide/dipeptide transporter, C-terminal region smi_0326 PF00005 ABC transporter smi_0328 PF02653 Branched-chain amino acid transport system / permease component smi_0329 PF00005 ABC transporter smi_0329 PF09383 NIL domain smi_0331 PF03672 Uncharacterised protein family (UPF0154) smi_0332 PF01177 Asp/Glu/Hydantoin racemase smi_0333 PF01725 Ham1 family smi_0336 PF02899 Phage integrase, N-terminal SAM-like domain smi_0336 PF00589 Phage integrase family smi_0337 PF02616 Segregation and condensation protein ScpA smi_0338 PF04079 Segregation and condensation complex subunit ScpB smi_0339 PF01479 S4 domain smi_0339 PF00849 RNA pseudouridylate synthase smi_0340 PF01809 Putative membrane protein insertion efficiency factor smi_0341 PF16363 GDP-mannose 4,6 dehydratase smi_0342 PF05343 M42 glutamyl aminopeptidase smi_0345 PF13088 BNR repeat-like domain smi_0345 PF04650 YSIRK type signal peptide smi_0345 PF02973 Sialidase, N-terminal domain smi_0346 PF00162 Phosphoglycerate kinase smi_0347 PF06081 Aromatic acid exporter family member 1 smi_0348 PF13411 MerR HTH family regulatory protein smi_0349 PF00120 Glutamine synthetase, catalytic domain smi_0349 PF03951 Glutamine synthetase, beta-Grasp domain smi_0353 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding smi_0353 PF01628 HrcA protein C terminal domain smi_0354 PF01025 GrpE smi_0355 PF00012 Hsp70 protein smi_0357 PF01556 DnaJ C terminal domain smi_0357 PF00684 DnaJ central domain smi_0357 PF00226 DnaJ domain smi_0360 PF01230 HIT domain smi_0361 PF00005 ABC transporter smi_0366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0366 PF17203 Single cache domain 3 smi_0366 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain smi_0366 PF00989 PAS fold smi_0374 PF02390 Putative methyltransferase smi_0375 PF17384 RimP C-terminal SH3 domain smi_0375 PF02576 RimP N-terminal domain smi_0376 PF00575 S1 RNA binding domain smi_0376 PF08529 NusA N-terminal domain smi_0376 PF13184 NusA-like KH domain smi_0377 PF04296 Protein of unknown function (DUF448) smi_0378 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family smi_0379 PF11987 Translation-initiation factor 2 smi_0379 PF04760 Translation initiation factor IF-2, N-terminal region smi_0379 PF00009 Elongation factor Tu GTP binding domain smi_0380 PF02033 Ribosome-binding factor A smi_0389 PF00133 tRNA synthetases class I (I, L, M and V) smi_0389 PF10458 Valyl tRNA synthetase tRNA binding arm smi_0389 PF08264 Anticodon-binding domain of tRNA smi_0390 PF00145 C-5 cytosine-specific DNA methylase smi_0391 PF00512 His Kinase A (phospho-acceptor) domain smi_0391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0393 PF17841 BID domain of Bartonella effector protein (Bep) smi_0393 PF02661 Fic/DOC family smi_0397 PF00005 ABC transporter smi_0399 PF00665 Integrase core domain smi_0399 PF13936 Helix-turn-helix domain smi_0400 PF05066 HB1, ASXL, restriction endonuclease HTH domain smi_0401 PF00117 Glutamine amidotransferase class-I smi_0401 PF06418 CTP synthase N-terminus smi_0404 PF00085 Thioredoxin smi_0405 PF14794 Domain of unknown function (DUF4479) smi_0405 PF01588 Putative tRNA binding domain smi_0406 PF00106 short chain dehydrogenase smi_0407 PF02796 Helix-turn-helix domain of resolvase smi_0407 PF00239 Resolvase, N terminal domain smi_0422 PF00270 DEAD/DEAH box helicase smi_0422 PF03461 TRCF domain smi_0422 PF00271 Helicase conserved C-terminal domain smi_0422 PF02559 CarD-like/TRCF domain smi_0422 PF17757 UvrB interaction domain smi_0442 PF10668 Phage terminase small subunit smi_0442 PF03592 Terminase small subunit smi_0467 PF04865 Baseplate J-like protein smi_0478 PF01473 Putative cell wall binding repeat smi_0478 PF01510 N-acetylmuramoyl-L-alanine amidase smi_0480 PF00436 Single-strand binding protein family smi_0481 PF00166 Chaperonin 10 Kd subunit smi_0482 PF00118 TCP-1/cpn60 chaperonin family smi_0483 PF02677 Epoxyqueuosine reductase QueH smi_0486 PF04167 Protein of unknown function (DUF402) smi_0487 PF02631 RecX family smi_0488 PF05958 tRNA (Uracil-5-)-methyltransferase smi_0488 PF01938 TRAM domain smi_0511 PF02237 Biotin protein ligase C terminal domain smi_0511 PF03099 Biotin/lipoate A/B protein ligase family smi_0512 PF13936 Helix-turn-helix domain smi_0512 PF00665 Integrase core domain smi_0515 PF00005 ABC transporter smi_0515 PF00571 CBS domain smi_0516 PF00528 Binding-protein-dependent transport system inner membrane component smi_0518 PF01545 Cation efflux family smi_0519 PF00356 Bacterial regulatory proteins, lacI family smi_0520 PF08544 GHMP kinases C terminal smi_0520 PF00288 GHMP kinases N terminal domain smi_0520 PF10509 Galactokinase galactose-binding signature smi_0521 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain smi_0521 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain smi_0523 PF02086 D12 class N6 adenine-specific DNA methyltransferase smi_0524 PF01555 DNA methylase smi_0526 PF04556 DpnII restriction endonuclease smi_0527 PF00860 Permease family smi_0528 PF00156 Phosphoribosyl transferase domain smi_0530 PF03372 Endonuclease/Exonuclease/phosphatase family smi_0532 PF01022 Bacterial regulatory protein, arsR family smi_0535 PF04239 Protein of unknown function (DUF421) smi_0536 PF00005 ABC transporter smi_0536 PF00664 ABC transporter transmembrane region smi_0537 PF00005 ABC transporter smi_0537 PF00664 ABC transporter transmembrane region smi_0538 PF02397 Bacterial sugar transferase smi_0539 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family smi_0541 PF04715 Anthranilate synthase component I, N terminal region smi_0541 PF00425 chorismate binding enzyme smi_0542 PF00117 Glutamine amidotransferase class-I smi_0543 PF00591 Glycosyl transferase family, a/b domain smi_0543 PF02885 Glycosyl transferase family, helical bundle domain smi_0544 PF00218 Indole-3-glycerol phosphate synthase smi_0545 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase smi_0546 PF00291 Pyridoxal-phosphate dependent enzyme smi_0547 PF00290 Tryptophan synthase alpha chain smi_0548 PF01478 Type IV leader peptidase family smi_0548 PF06750 Bacterial Peptidase A24 N-terminal domain smi_0550 PF05532 CsbD-like smi_0551 PF03780 Asp23 family, cell envelope-related function smi_0554 PF04226 Transglycosylase associated protein smi_0555 PF05043 Mga helix-turn-helix domain smi_0555 PF08270 M protein trans-acting positive regulator (MGA) PRD domain smi_0555 PF08280 M protein trans-acting positive regulator (MGA) HTH domain smi_0557 PF08240 Alcohol dehydrogenase GroES-like domain smi_0557 PF00550 Phosphopantetheine attachment site smi_0557 PF00107 Zinc-binding dehydrogenase smi_0557 PF14765 Polyketide synthase dehydratase smi_0557 PF08659 KR domain smi_0557 PF02801 Beta-ketoacyl synthase, C-terminal domain smi_0557 PF00698 Acyl transferase domain smi_0557 PF00109 Beta-ketoacyl synthase, N-terminal domain smi_0557 PF16197 Ketoacyl-synthetase C-terminal extension smi_0558 PF02082 Transcriptional regulator smi_0560 PF12002 MgsA AAA+ ATPase C terminal smi_0560 PF05496 Holliday junction DNA helicase RuvB P-loop domain smi_0560 PF16193 AAA C-terminal domain smi_0562 PF00293 NUDIX domain smi_0564 PF04452 RNA methyltransferase smi_0565 PF08439 Oligopeptidase F smi_0565 PF01432 Peptidase family M3 smi_0568 PF00230 Major intrinsic protein smi_0569 PF14489 QueF-like protein smi_0570 PF04055 Radical SAM superfamily smi_0571 PF01242 6-pyruvoyl tetrahydropterin synthase smi_0572 PF06508 Queuosine biosynthesis protein QueC smi_0573 PF00085 Thioredoxin smi_0576 PF03788 LrgA family smi_0577 PF04172 LrgB-like family smi_0578 PF00005 ABC transporter smi_0580 PF00005 ABC transporter smi_0581 PF00392 Bacterial regulatory proteins, gntR family smi_0582 PF03477 ATP cone domain smi_0584 PF01695 IstB-like ATP binding protein smi_0584 PF07319 Primosomal protein DnaI N-terminus smi_0585 PF00881 Nitroreductase family smi_0586 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal smi_0586 PF01926 50S ribosome-binding GTPase smi_0589 PF01043 SecA preprotein cross-linking domain smi_0589 PF07517 SecA DEAD-like domain smi_0589 PF02810 SEC-C motif smi_0589 PF07516 SecA Wing and Scaffold domain smi_0590 PF00793 DAHP synthetase I family smi_0591 PF00793 DAHP synthetase I family smi_0592 PF01648 4'-phosphopantetheinyl transferase superfamily smi_0593 PF01168 Alanine racemase, N-terminal domain smi_0593 PF00842 Alanine racemase, C-terminal domain smi_0594 PF17191 RecG wedge domain smi_0594 PF00271 Helicase conserved C-terminal domain smi_0594 PF00270 DEAD/DEAH box helicase smi_0599 PF13302 Acetyltransferase (GNAT) domain smi_0600 PF05448 Acetyl xylan esterase (AXE1) smi_0601 PF02973 Sialidase, N-terminal domain smi_0601 PF13088 BNR repeat-like domain smi_0601 PF04650 YSIRK type signal peptide smi_0602 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase smi_0604 PF00528 Binding-protein-dependent transport system inner membrane component smi_0605 PF00528 Binding-protein-dependent transport system inner membrane component smi_0606 PF04074 YhcH/YjgK/YiaL smi_0608 PF00701 Dihydrodipicolinate synthetase family smi_0609 PF00480 ROK family smi_0613 PF00905 Penicillin binding protein transpeptidase domain smi_0613 PF03717 Penicillin-binding Protein dimerisation domain smi_0614 PF02132 RecR protein smi_0614 PF13662 Toprim domain smi_0615 PF07478 D-ala D-ala ligase C-terminus smi_0615 PF01820 D-ala D-ala ligase N-terminus smi_0616 PF02875 Mur ligase family, glutamate ligase domain smi_0616 PF08245 Mur ligase middle domain smi_0616 PF01225 Mur ligase family, catalytic domain smi_0618 PF13936 Helix-turn-helix domain smi_0618 PF00665 Integrase core domain smi_0619 PF13936 Helix-turn-helix domain smi_0619 PF00665 Integrase core domain smi_0620 PF02491 SHS2 domain inserted in FTSA smi_0620 PF11983 Membrane-attachment and polymerisation-promoting switch smi_0621 PF00091 Tubulin/FtsZ family, GTPase domain smi_0621 PF12327 FtsZ family, C-terminal domain smi_0622 PF01168 Alanine racemase, N-terminal domain smi_0623 PF04472 Cell division protein SepF smi_0626 PF05103 DivIVA protein smi_0627 PF06827 Zinc finger found in FPG and IleRS smi_0627 PF00133 tRNA synthetases class I (I, L, M and V) smi_0627 PF08264 Anticodon-binding domain of tRNA smi_0629 PF00300 Histidine phosphatase superfamily (branch 1) smi_0631 PF02687 FtsX-like permease family smi_0631 PF12704 MacB-like periplasmic core domain smi_0631 PF00005 ABC transporter smi_0633 PF08534 Redoxin smi_0634 PF01297 Zinc-uptake complex component A periplasmic smi_0635 PF00950 ABC 3 transport family smi_0636 PF00005 ABC transporter smi_0637 PF07690 Major Facilitator Superfamily smi_0638 PF00899 ThiF family smi_0638 PF00581 Rhodanese-like domain smi_0639 PF05649 Peptidase family M13 smi_0639 PF01431 Peptidase family M13 smi_0640 PF00753 Metallo-beta-lactamase superfamily smi_0642 PF02824 TGS domain smi_0642 PF04607 Region found in RelA / SpoT proteins smi_0642 PF13291 ACT domain smi_0643 PF02580 D-Tyr-tRNA(Tyr) deacylase smi_0647 PF02082 Transcriptional regulator smi_0649 PF00486 Transcriptional regulatory protein, C terminal smi_0649 PF00072 Response regulator receiver domain smi_0650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0651 PF00005 ABC transporter smi_0653 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain smi_0653 PF02824 TGS domain smi_0653 PF03129 Anticodon binding domain smi_0653 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) smi_0656 PF00312 Ribosomal protein S15 smi_0657 PF01032 FecCD transport family smi_0658 PF00005 ABC transporter smi_0661 PF01553 Acyltransferase smi_0662 PF00665 Integrase core domain smi_0662 PF13936 Helix-turn-helix domain smi_0664 PF04816 tRNA (adenine(22)-N(1))-methyltransferase smi_0665 PF01784 NIF3 (NGG1p interacting factor 3) smi_0666 PF01266 FAD dependent oxidoreductase smi_0667 PF01266 FAD dependent oxidoreductase smi_0668 PF16363 GDP-mannose 4,6 dehydratase smi_0669 PF00535 Glycosyl transferase family 2 smi_0672 PF02224 Cytidylate kinase smi_0673 PF03831 PhnA domain smi_0673 PF08274 PhnA Zinc-Ribbon smi_0676 PF01416 tRNA pseudouridine synthase smi_0677 PF08543 Phosphomethylpyrimidine kinase smi_0678 PF07155 ECF-type riboflavin transporter, S component smi_0679 PF01321 Creatinase/Prolidase N-terminal domain smi_0679 PF00557 Metallopeptidase family M24 smi_0680 PF07685 CobB/CobQ-like glutamine amidotransferase domain smi_0681 PF08245 Mur ligase middle domain smi_0681 PF08353 Domain of unknown function (DUF1727) smi_0682 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_0682 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain smi_0683 PF00909 Ammonium Transporter Family smi_0684 PF00543 Nitrogen regulatory protein P-II smi_0685 PF00271 Helicase conserved C-terminal domain smi_0685 PF00270 DEAD/DEAH box helicase smi_0686 PF13936 Helix-turn-helix domain smi_0686 PF00665 Integrase core domain smi_0687 PF08222 CodY helix-turn-helix domain smi_0687 PF06018 CodY GAF-like domain smi_0688 PF00857 Isochorismatase family smi_0690 PF12704 MacB-like periplasmic core domain smi_0690 PF02687 FtsX-like permease family smi_0691 PF00005 ABC transporter smi_0692 PF12704 MacB-like periplasmic core domain smi_0692 PF02687 FtsX-like permease family smi_0693 PF00072 Response regulator receiver domain smi_0693 PF00486 Transcriptional regulatory protein, C terminal smi_0694 PF00672 HAMP domain smi_0694 PF00512 His Kinase A (phospho-acceptor) domain smi_0694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0695 PF01116 Fructose-bisphosphate aldolase class-II smi_0699 PF12146 Serine aminopeptidase, S33 smi_0701 PF00005 ABC transporter smi_0705 PF00082 Subtilase family smi_0708 PF04055 Radical SAM superfamily smi_0708 PF16199 Radical_SAM C-terminal domain smi_0709 PF06962 Putative rRNA methylase smi_0711 PF00999 Sodium/hydrogen exchanger family smi_0713 PF02547 Queuosine biosynthesis protein smi_0714 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase smi_0715 PF01165 Ribosomal protein S21 smi_0716 PF07475 HPr Serine kinase C-terminal domain smi_0716 PF02603 HPr Serine kinase N terminus smi_0717 PF01790 Prolipoprotein diacylglyceryl transferase smi_0720 PF06969 HemN C-terminal domain smi_0720 PF04055 Radical SAM superfamily smi_0722 PF13344 Haloacid dehalogenase-like hydrolase smi_0724 PF01381 Helix-turn-helix smi_0728 PF03960 ArsC family smi_0729 PF05256 Uncharacterised protein family (UPF0223) smi_0730 PF00459 Inositol monophosphatase family smi_0731 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF smi_0731 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF smi_0731 PF01189 16S rRNA methyltransferase RsmB/F smi_0732 PF12849 PBP superfamily domain smi_0733 PF00528 Binding-protein-dependent transport system inner membrane component smi_0734 PF00528 Binding-protein-dependent transport system inner membrane component smi_0735 PF00005 ABC transporter smi_0736 PF00005 ABC transporter smi_0737 PF01895 PhoU domain smi_0738 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_0739 PF00392 Bacterial regulatory proteins, gntR family smi_0739 PF00155 Aminotransferase class I and II smi_0740 PF03306 Alpha-acetolactate decarboxylase smi_0742 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain smi_0742 PF01565 FAD binding domain smi_0743 PF08402 TOBE domain smi_0743 PF00005 ABC transporter smi_0745 PF00528 Binding-protein-dependent transport system inner membrane component smi_0746 PF13416 Bacterial extracellular solute-binding protein smi_0747 PF00665 Integrase core domain smi_0747 PF13936 Helix-turn-helix domain smi_0749 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain smi_0749 PF01411 tRNA synthetases class II (A) smi_0749 PF02272 DHHA1 domain smi_0750 PF09154 Domain of unknown function (DUF1939) smi_0750 PF00128 Alpha amylase, catalytic domain smi_0751 PF00005 ABC transporter smi_0753 PF00884 Sulfatase smi_0754 PF17785 PUA-like domain smi_0754 PF10672 S-adenosylmethionine-dependent methyltransferase smi_0755 PF01487 Type I 3-dehydroquinase smi_0756 PF08501 Shikimate dehydrogenase substrate binding domain smi_0756 PF18317 Shikimate 5'-dehydrogenase C-terminal domain smi_0757 PF01761 3-dehydroquinate synthase smi_0758 PF01264 Chorismate synthase smi_0759 PF02153 Prephenate dehydrogenase smi_0760 PF06133 Control of competence regulator ComK, YlbF/YmcA smi_0763 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) smi_0764 PF01202 Shikimate kinase smi_0765 PF00800 Prephenate dehydratase smi_0766 PF03816 Cell envelope-related transcriptional attenuator domain smi_0767 PF04991 LicD family smi_0768 PF00534 Glycosyl transferases group 1 smi_0768 PF13439 Glycosyltransferase Family 4 smi_0769 PF00535 Glycosyl transferase family 2 smi_0772 PF05389 Negative regulator of genetic competence (MecA) smi_0773 PF03447 Homoserine dehydrogenase, NAD binding domain smi_0773 PF00742 Homoserine dehydrogenase smi_0774 PF08544 GHMP kinases C terminal smi_0774 PF00288 GHMP kinases N terminal domain smi_0775 PF01625 Peptide methionine sulfoxide reductase smi_0775 PF01641 SelR domain smi_0776 PF00664 ABC transporter transmembrane region smi_0776 PF00005 ABC transporter smi_0777 PF00664 ABC transporter transmembrane region smi_0777 PF00005 ABC transporter smi_0778 PF01979 Amidohydrolase family smi_0779 PF00665 Integrase core domain smi_0779 PF13936 Helix-turn-helix domain smi_0780 PF00665 Integrase core domain smi_0780 PF13936 Helix-turn-helix domain smi_0781 PF00665 Integrase core domain smi_0781 PF13936 Helix-turn-helix domain smi_0782 PF00665 Integrase core domain smi_0782 PF13936 Helix-turn-helix domain smi_0783 PF00466 Ribosomal protein L10 smi_0784 PF16320 Ribosomal protein L7/L12 dimerisation domain smi_0784 PF00542 Ribosomal protein L7/L12 C-terminal domain smi_0786 PF18008 Replication initiator protein A C-terminal domain smi_0786 PF06970 Replication initiator protein A (RepA) N-terminus smi_0787 PF00145 C-5 cytosine-specific DNA methylase smi_0792 PF01380 SIS domain smi_0792 PF01418 Helix-turn-helix domain, rpiR family smi_0793 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase smi_0794 PF00701 Dihydrodipicolinate synthetase family smi_0795 PF00474 Sodium:solute symporter family smi_0797 PF01408 Oxidoreductase family, NAD-binding Rossmann fold smi_0797 PF02894 Oxidoreductase family, C-terminal alpha/beta domain smi_0798 PF00480 ROK family smi_0800 PF01496 V-type ATPase 116kDa subunit family smi_0801 PF00137 ATP synthase subunit C smi_0804 PF01990 ATP synthase (F/14-kDa) subunit smi_0805 PF02874 ATP synthase alpha/beta family, beta-barrel domain smi_0805 PF16886 ATPsynthase alpha/beta subunit N-term extension smi_0805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain smi_0806 PF02874 ATP synthase alpha/beta family, beta-barrel domain smi_0806 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain smi_0807 PF01813 ATP synthase subunit D smi_0809 PF01797 Transposase IS200 like smi_0811 PF01797 Transposase IS200 like smi_0813 PF01797 Transposase IS200 like smi_0814 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain smi_0814 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase smi_0815 PF01180 Dihydroorotate dehydrogenase smi_0817 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain smi_0817 PF02777 Iron/manganese superoxide dismutases, C-terminal domain smi_0818 PF06265 Protein of unknown function (DUF1027) smi_0819 PF04055 Radical SAM superfamily smi_0821 PF12848 ABC transporter smi_0821 PF00005 ABC transporter smi_0822 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD smi_0825 PF00886 Ribosomal protein S16 smi_0829 PF05239 PRC-barrel domain smi_0829 PF01782 RimM N-terminal domain smi_0830 PF01746 tRNA (Guanine-1)-methyltransferase smi_0831 PF03477 ATP cone domain smi_0831 PF13597 Anaerobic ribonucleoside-triphosphate reductase smi_0834 PF02632 BioY family smi_0836 PF00005 ABC transporter smi_0838 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_0838 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain smi_0839 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion smi_0840 PF00005 ABC transporter smi_0841 PF02687 FtsX-like permease family smi_0841 PF12704 MacB-like periplasmic core domain smi_0842 PF01588 Putative tRNA binding domain smi_0842 PF09334 tRNA synthetases class I (M) smi_0843 PF00248 Aldo/keto reductase family smi_0850 PF01433 Peptidase family M1 domain smi_0850 PF11838 ERAP1-like C-terminal domain smi_0851 PF00486 Transcriptional regulatory protein, C terminal smi_0851 PF00072 Response regulator receiver domain smi_0852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0852 PF00512 His Kinase A (phospho-acceptor) domain smi_0855 PF13307 Helicase C-terminal domain smi_0855 PF04851 Type III restriction enzyme, res subunit smi_0855 PF00929 Exonuclease smi_0856 PF01098 Cell cycle protein smi_0857 PF01965 DJ-1/PfpI family smi_0858 PF13936 Helix-turn-helix domain smi_0858 PF00665 Integrase core domain smi_0860 PF00986 DNA gyrase B subunit, carboxyl terminus smi_0860 PF01751 Toprim domain smi_0860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0860 PF00204 DNA gyrase B smi_0861 PF06160 Septation ring formation regulator, EzrA smi_0864 PF00293 NUDIX domain smi_0865 PF10431 C-terminal, D2-small domain, of ClpB protein smi_0865 PF17871 AAA lid domain smi_0865 PF07724 AAA domain (Cdc48 subfamily) smi_0865 PF00004 ATPase family associated with various cellular activities (AAA) smi_0866 PF08796 Protein of unknown function (DUF1797) smi_0867 PF00528 Binding-protein-dependent transport system inner membrane component smi_0868 PF00005 ABC transporter smi_0869 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain smi_0869 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain smi_0871 PF01256 Carbohydrate kinase smi_0873 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) smi_0874 PF01676 Metalloenzyme superfamily smi_0876 PF01048 Phosphorylase superfamily smi_0878 PF00117 Glutamine amidotransferase class-I smi_0879 PF01048 Phosphorylase superfamily smi_0880 PF02146 Sir2 family smi_0882 PF01649 Ribosomal protein S20 smi_0883 PF00485 Phosphoribulokinase / Uridine kinase family smi_0885 PF13411 MerR HTH family regulatory protein smi_0886 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain smi_0886 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_0886 PF00403 Heavy-metal-associated domain smi_0888 PF05175 Methyltransferase small domain smi_0889 PF02885 Glycosyl transferase family, helical bundle domain smi_0889 PF00591 Glycosyl transferase family, a/b domain smi_0889 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain smi_0890 PF01791 DeoC/LacD family aldolase smi_0891 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region smi_0892 PF02608 ABC transporter substrate-binding protein PnrA-like smi_0893 PF00005 ABC transporter smi_0894 PF02653 Branched-chain amino acid transport system / permease component smi_0895 PF02653 Branched-chain amino acid transport system / permease component smi_0896 PF02660 Glycerol-3-phosphate acyltransferase smi_0897 PF00986 DNA gyrase B subunit, carboxyl terminus smi_0897 PF00204 DNA gyrase B smi_0897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_0897 PF01751 Toprim domain smi_0905 PF03989 DNA gyrase C-terminal domain, beta-propeller smi_0905 PF00521 DNA gyrase/topoisomerase IV, subunit A smi_0906 PF01063 Amino-transferase class IV smi_0907 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_0911 PF00575 S1 RNA binding domain smi_0912 PF13185 GAF domain smi_0913 PF12169 DNA polymerase III subunits gamma and tau domain III smi_0915 PF00005 ABC transporter smi_0916 PF01458 Uncharacterized protein family (UPF0051) smi_0917 PF00266 Aminotransferase class-V smi_0918 PF01592 NifU-like N terminal domain smi_0919 PF01458 Uncharacterized protein family (UPF0051) smi_0920 PF07943 Penicillin-binding protein 5, C-terminal domain smi_0920 PF00768 D-alanyl-D-alanine carboxypeptidase smi_0921 PF01594 AI-2E family transporter smi_0922 PF03143 Elongation factor Tu C-terminal domain smi_0922 PF03144 Elongation factor Tu domain 2 smi_0922 PF00009 Elongation factor Tu GTP binding domain smi_0923 PF00270 DEAD/DEAH box helicase smi_0923 PF00271 Helicase conserved C-terminal domain smi_0924 PF02894 Oxidoreductase family, C-terminal alpha/beta domain smi_0924 PF01408 Oxidoreductase family, NAD-binding Rossmann fold smi_0925 PF00665 Integrase core domain smi_0925 PF13936 Helix-turn-helix domain smi_0926 PF00829 Ribosomal prokaryotic L21 protein smi_0928 PF01016 Ribosomal L27 protein smi_0929 PF00665 Integrase core domain smi_0929 PF13936 Helix-turn-helix domain smi_0930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family smi_0930 PF03466 LysR substrate binding domain smi_0931 PF01252 Signal peptidase (SPase) II smi_0932 PF00849 RNA pseudouridylate synthase smi_0932 PF01479 S4 domain smi_0934 PF12706 Beta-lactamase superfamily domain smi_0935 PF00696 Amino acid kinase family smi_0935 PF01472 PUA domain smi_0936 PF00171 Aldehyde dehydrogenase family smi_0937 PF14748 Pyrroline-5-carboxylate reductase dimerisation smi_0937 PF03807 NADP oxidoreductase coenzyme F420-dependent smi_0938 PF02223 Thymidylate kinase smi_0939 PF09115 DNA polymerase III, delta subunit, C terminal smi_0940 PF06156 Initiation control protein YabA smi_0941 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases smi_0942 PF00145 C-5 cytosine-specific DNA methylase smi_0944 PF01381 Helix-turn-helix smi_0944 PF00145 C-5 cytosine-specific DNA methylase smi_0948 PF01134 Glucose inhibited division protein A smi_0949 PF00696 Amino acid kinase family smi_0950 PF01765 Ribosome recycling factor smi_0951 PF13509 S1 domain smi_0951 PF17783 CvfB-like winged helix domain smi_0952 PF06855 YozE SAM-like fold smi_0953 PF02562 PhoH-like protein smi_0954 PF13302 Acetyltransferase (GNAT) domain smi_0955 PF10531 SLBB domain smi_0956 PF03772 Competence protein smi_0956 PF13567 Domain of unknown function (DUF4131) smi_0956 PF00753 Metallo-beta-lactamase superfamily smi_0957 PF00005 ABC transporter smi_0959 PF05198 Translation initiation factor IF-3, N-terminal domain smi_0959 PF00707 Translation initiation factor IF-3, C-terminal domain smi_0960 PF01632 Ribosomal protein L35 smi_0961 PF00453 Ribosomal protein L20 smi_0962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily smi_0963 PF00665 Integrase core domain smi_0963 PF13936 Helix-turn-helix domain smi_0964 PF00175 Oxidoreductase NAD-binding domain smi_0964 PF00970 Oxidoreductase FAD-binding domain smi_0964 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B smi_0965 PF01180 Dihydroorotate dehydrogenase smi_0966 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase smi_0966 PF01473 Putative cell wall binding repeat smi_0966 PF17890 Peptidoglycan hydrolase LytB WW-like domain smi_0966 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain smi_0967 PF05670 NFACT protein RNA binding domain smi_0968 PF02130 Uncharacterized protein family UPF0054 smi_0969 PF01219 Prokaryotic diacylglycerol kinase smi_0970 PF07650 KH domain smi_0970 PF01926 50S ribosome-binding GTPase smi_0971 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain smi_0971 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain smi_0971 PF06827 Zinc finger found in FPG and IleRS smi_0972 PF01121 Dephospho-CoA kinase smi_0973 PF07690 Major Facilitator Superfamily smi_0973 PF00083 Sugar (and other) transporter smi_0974 PF00471 Ribosomal protein L33 smi_0976 PF17876 Cold shock domain smi_0976 PF08206 Ribonuclease B OB domain smi_0976 PF00773 RNB domain smi_0976 PF00575 S1 RNA binding domain smi_0977 PF01668 SmpB protein smi_0978 PF09313 Domain of unknown function (DUF1971) smi_0978 PF03848 Tellurite resistance protein TehB smi_0981 PF08439 Oligopeptidase F smi_0981 PF01432 Peptidase family M3 smi_0982 PF01596 O-methyltransferase smi_0983 PF13145 PPIC-type PPIASE domain smi_0984 PF01098 Cell cycle protein smi_0985 PF00311 Phosphoenolpyruvate carboxylase smi_0986 PF13936 Helix-turn-helix domain smi_0986 PF00665 Integrase core domain smi_0987 PF00665 Integrase core domain smi_0987 PF13936 Helix-turn-helix domain smi_0990 PF00005 ABC transporter smi_0991 PF01807 CHC2 zinc finger smi_0991 PF08275 DNA primase catalytic core, N-terminal domain smi_0991 PF10410 DnaB-helicase binding domain of primase smi_0992 PF00140 Sigma-70 factor, region 1.2 smi_0992 PF04545 Sigma-70, region 4 smi_0992 PF04539 Sigma-70 region 3 smi_0992 PF04542 Sigma-70 region 2 smi_0992 PF03979 Sigma-70 factor, region 1.1 smi_0993 PF01883 Iron-sulfur cluster assembly protein smi_0994 PF00534 Glycosyl transferases group 1 smi_0994 PF13439 Glycosyltransferase Family 4 smi_0995 PF00534 Glycosyl transferases group 1 smi_0995 PF13439 Glycosyltransferase Family 4 smi_0998 PF09269 Domain of unknown function (DUF1967) smi_0998 PF01018 GTP1/OBG smi_0998 PF01926 50S ribosome-binding GTPase smi_1000 PF01316 Arginine repressor, DNA binding domain smi_1000 PF02863 Arginine repressor, C-terminal domain smi_1001 PF02129 X-Pro dipeptidyl-peptidase (S15 family) smi_1001 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain smi_1001 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal smi_1002 PF04650 YSIRK type signal peptide smi_1002 PF06458 MucBP domain smi_1002 PF00746 LPXTG cell wall anchor motif smi_1003 PF01336 OB-fold nucleic acid binding domain smi_1003 PF02811 PHP domain smi_1003 PF14579 Helix-hairpin-helix motif smi_1003 PF17657 Bacterial DNA polymerase III alpha subunit finger domain smi_1003 PF07733 Bacterial DNA polymerase III alpha NTPase domain smi_1004 PF00365 Phosphofructokinase smi_1005 PF02887 Pyruvate kinase, alpha/beta domain smi_1005 PF00224 Pyruvate kinase, barrel domain smi_1006 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain smi_1006 PF00056 lactate/malate dehydrogenase, NAD binding domain smi_1007 PF00521 DNA gyrase/topoisomerase IV, subunit A smi_1007 PF03989 DNA gyrase C-terminal domain, beta-propeller smi_1008 PF04203 Sortase domain smi_1010 PF01053 Cys/Met metabolism PLP-dependent enzyme smi_1012 PF01509 TruB family pseudouridylate synthase (N terminal domain) smi_1012 PF16198 tRNA pseudouridylate synthase B C-terminal domain smi_1013 PF00485 Phosphoribulokinase / Uridine kinase family smi_1014 PF13742 OB-fold nucleic acid binding domain smi_1014 PF02601 Exonuclease VII, large subunit smi_1015 PF02609 Exonuclease VII small subunit smi_1016 PF00348 Polyprenyl synthetase smi_1017 PF01728 FtsJ-like methyltransferase smi_1017 PF01479 S4 domain smi_1018 PF02863 Arginine repressor, C-terminal domain smi_1018 PF01316 Arginine repressor, DNA binding domain smi_1019 PF13476 AAA domain smi_1020 PF00149 Calcineurin-like phosphoesterase smi_1021 PF03144 Elongation factor Tu domain 2 smi_1021 PF06421 GTP-binding protein LepA C-terminus smi_1021 PF00009 Elongation factor Tu GTP binding domain smi_1021 PF00679 Elongation factor G C-terminus smi_1024 PF03611 PTS system sugar-specific permease component smi_1025 PF01263 Aldose 1-epimerase smi_1026 PF02502 Ribose/Galactose Isomerase smi_1027 PF02502 Ribose/Galactose Isomerase smi_1028 PF00294 pfkB family carbohydrate kinase smi_1029 PF01791 DeoC/LacD family aldolase smi_1030 PF02502 Ribose/Galactose Isomerase smi_1031 PF02502 Ribose/Galactose Isomerase smi_1032 PF02082 Transcriptional regulator smi_1033 PF00892 EamA-like transporter family smi_1034 PF13847 Methyltransferase domain smi_1036 PF03123 CAT RNA binding domain smi_1036 PF00874 PRD domain smi_1037 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit smi_1038 PF02378 Phosphotransferase system, EIIC smi_1038 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit smi_1039 PF00232 Glycosyl hydrolase family 1 smi_1041 PF08220 DeoR-like helix-turn-helix domain smi_1041 PF00455 DeoR C terminal sensor domain smi_1042 PF00268 Ribonucleotide reductase, small chain smi_1043 PF00317 Ribonucleotide reductase, all-alpha domain smi_1043 PF02867 Ribonucleotide reductase, barrel domain smi_1043 PF08343 Ribonucleotide reductase N-terminal smi_1044 PF00462 Glutaredoxin smi_1045 PF00381 PTS HPr component phosphorylation site smi_1046 PF05524 PEP-utilising enzyme, N-terminal smi_1046 PF00391 PEP-utilising enzyme, mobile domain smi_1046 PF02896 PEP-utilising enzyme, TIM barrel domain smi_1049 PF02733 Dak1 domain smi_1050 PF00440 Bacterial regulatory proteins, tetR family smi_1050 PF14278 Transcriptional regulator C-terminal region smi_1051 PF02733 Dak1 domain smi_1052 PF02734 DAK2 domain smi_1053 PF03610 PTS system fructose IIA component smi_1054 PF13419 Haloacid dehalogenase-like hydrolase smi_1055 PF03167 Uracil DNA glycosylase superfamily smi_1056 PF00293 NUDIX domain smi_1057 PF01979 Amidohydrolase family smi_1058 PF01554 MatE smi_1059 PF00589 Phage integrase family smi_1061 PF00654 Voltage gated chloride channel smi_1062 PF01351 Ribonuclease HII smi_1063 PF01926 50S ribosome-binding GTPase smi_1066 PF12705 PD-(D/E)XK nuclease superfamily smi_1066 PF00580 UvrD/REP helicase N-terminal domain smi_1066 PF13361 UvrD-like helicase C-terminal domain smi_1067 PF12705 PD-(D/E)XK nuclease superfamily smi_1068 PF13936 Helix-turn-helix domain smi_1068 PF00665 Integrase core domain smi_1070 PF00005 ABC transporter smi_1072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_1072 PF00512 His Kinase A (phospho-acceptor) domain smi_1073 PF00072 Response regulator receiver domain smi_1073 PF00486 Transcriptional regulatory protein, C terminal smi_1075 PF02687 FtsX-like permease family smi_1076 PF00005 ABC transporter smi_1080 PF17283 SprT-like zinc ribbon domain smi_1080 PF10263 SprT-like family smi_1081 PF17674 HHH domain smi_1081 PF00575 S1 RNA binding domain smi_1081 PF09371 Tex-like protein N-terminal domain smi_1081 PF16921 Tex protein YqgF-like domain smi_1084 PF03773 Predicted permease smi_1085 PF09323 Domain of unknown function (DUF1980) smi_1087 PF00665 Integrase core domain smi_1087 PF13936 Helix-turn-helix domain smi_1090 PF13361 UvrD-like helicase C-terminal domain smi_1090 PF00580 UvrD/REP helicase N-terminal domain smi_1092 PF02861 Clp amino terminal domain, pathogenicity island component smi_1092 PF17871 AAA lid domain smi_1092 PF10431 C-terminal, D2-small domain, of ClpB protein smi_1092 PF00004 ATPase family associated with various cellular activities (AAA) smi_1092 PF07724 AAA domain (Cdc48 subfamily) smi_1097 PF13291 ACT domain smi_1097 PF04607 Region found in RelA / SpoT proteins smi_1097 PF02824 TGS domain smi_1101 PF06414 Zeta toxin smi_1102 PF01381 Helix-turn-helix smi_1104 PF00128 Alpha amylase, catalytic domain smi_1104 PF02903 Alpha amylase, N-terminal ig-like domain smi_1105 PF00781 Diacylglycerol kinase catalytic domain smi_1109 PF07690 Major Facilitator Superfamily smi_1111 PF00583 Acetyltransferase (GNAT) family smi_1119 PF05958 tRNA (Uracil-5-)-methyltransferase smi_1123 PF00464 Serine hydroxymethyltransferase smi_1126 PF05175 Methyltransferase small domain smi_1127 PF00472 RF-1 domain smi_1127 PF03462 PCRF domain smi_1129 PF00265 Thymidine kinase smi_1130 PF01361 Tautomerase enzyme smi_1131 PF10396 GTP-binding protein TrmE N-terminus smi_1131 PF12631 MnmE helical domain smi_1131 PF01926 50S ribosome-binding GTPase smi_1132 PF00701 Dihydrodipicolinate synthetase family smi_1133 PF02774 Semialdehyde dehydrogenase, dimerisation domain smi_1133 PF01118 Semialdehyde dehydrogenase, NAD binding domain smi_1135 PF06177 QueT transporter smi_1137 PF01741 Large-conductance mechanosensitive channel, MscL smi_1138 PF00762 Ferrochelatase smi_1139 PF07687 Peptidase dimerisation domain smi_1139 PF01546 Peptidase family M20/M25/M40 smi_1140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) smi_1143 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment smi_1143 PF01297 Zinc-uptake complex component A periplasmic smi_1144 PF13520 Amino acid permease smi_1145 PF00578 AhpC/TSA family smi_1146 PF02683 Cytochrome C biogenesis protein transmembrane region smi_1149 PF02683 Cytochrome C biogenesis protein transmembrane region smi_1150 PF00216 Bacterial DNA-binding protein smi_1151 PF02645 Uncharacterised protein, DegV family COG1307 smi_1152 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) smi_1152 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 smi_1153 PF01687 Riboflavin kinase smi_1153 PF06574 FAD synthetase smi_1154 PF00557 Metallopeptidase family M24 smi_1155 PF00392 Bacterial regulatory proteins, gntR family smi_1155 PF07085 DRTGG domain smi_1155 PF03061 Thioesterase superfamily smi_1155 PF00571 CBS domain smi_1157 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) smi_1158 PF00665 Integrase core domain smi_1158 PF13936 Helix-turn-helix domain smi_1159 PF00113 Enolase, C-terminal TIM barrel domain smi_1159 PF03952 Enolase, N-terminal domain smi_1161 PF02595 Glycerate kinase family smi_1163 PF00534 Glycosyl transferases group 1 smi_1163 PF08323 Starch synthase catalytic domain smi_1164 PF00483 Nucleotidyl transferase smi_1165 PF00483 Nucleotidyl transferase smi_1166 PF00128 Alpha amylase, catalytic domain smi_1166 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) smi_1166 PF02806 Alpha amylase, C-terminal all-beta domain smi_1167 PF13936 Helix-turn-helix domain smi_1167 PF00665 Integrase core domain smi_1168 PF17999 Pullulanase N1-terminal domain smi_1168 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) smi_1168 PF00128 Alpha amylase, catalytic domain smi_1169 PF12826 Helix-hairpin-helix motif smi_1169 PF00533 BRCA1 C Terminus (BRCT) domain smi_1169 PF01653 NAD-dependent DNA ligase adenylation domain smi_1169 PF03120 NAD-dependent DNA ligase OB-fold domain smi_1169 PF03119 NAD-dependent DNA ligase C4 zinc finger domain smi_1172 PF12848 ABC transporter smi_1172 PF16326 ABC transporter C-terminal domain smi_1172 PF00005 ABC transporter smi_1173 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I smi_1173 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II smi_1173 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III smi_1173 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain smi_1175 PF00753 Metallo-beta-lactamase superfamily smi_1176 PF13426 PAS domain smi_1176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_1176 PF00672 HAMP domain smi_1176 PF00512 His Kinase A (phospho-acceptor) domain smi_1177 PF00486 Transcriptional regulatory protein, C terminal smi_1177 PF00072 Response regulator receiver domain smi_1178 PF14815 NUDIX domain smi_1178 PF00730 HhH-GPD superfamily base excision DNA repair protein smi_1179 PF01515 Phosphate acetyl/butaryl transferase smi_1180 PF00849 RNA pseudouridylate synthase smi_1181 PF01513 ATP-NAD kinase smi_1182 PF04607 Region found in RelA / SpoT proteins smi_1184 PF14572 Phosphoribosyl synthetase-associated domain smi_1184 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase smi_1185 PF00266 Aminotransferase class-V smi_1188 PF06971 Putative DNA-binding protein N-terminus smi_1188 PF02629 CoA binding domain smi_1189 PF07722 Peptidase C26 smi_1190 PF04002 RadC-like JAB domain smi_1191 PF00580 UvrD/REP helicase N-terminal domain smi_1191 PF13361 UvrD-like helicase C-terminal domain smi_1192 PF01268 Formate--tetrahydrofolate ligase smi_1194 PF02441 Flavoprotein smi_1195 PF12822 ECF transporter, substrate-specific component smi_1197 PF08279 HTH domain smi_1197 PF02829 3H domain smi_1198 PF00293 NUDIX domain smi_1198 PF09297 NADH pyrophosphatase zinc ribbon domain smi_1201 PF04851 Type III restriction enzyme, res subunit smi_1201 PF02151 UvrB/uvrC motif smi_1201 PF12344 Ultra-violet resistance protein B smi_1201 PF17757 UvrB interaction domain smi_1201 PF00271 Helicase conserved C-terminal domain smi_1203 PF00528 Binding-protein-dependent transport system inner membrane component smi_1204 PF00005 ABC transporter smi_1205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain smi_1205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain smi_1206 PF02881 SRP54-type protein, helical bundle domain smi_1206 PF00448 SRP54-type protein, GTPase domain smi_1209 PF06470 SMC proteins Flexible Hinge Domain smi_1209 PF02463 RecF/RecN/SMC N terminal domain smi_1210 PF00035 Double-stranded RNA binding motif smi_1210 PF14622 Ribonuclease-III-like smi_1212 PF00478 IMP dehydrogenase / GMP reductase domain smi_1214 PF00694 Aconitase C-terminal domain smi_1215 PF00330 Aconitase family (aconitate hydratase) smi_1217 PF00180 Isocitrate/isopropylmalate dehydrogenase smi_1218 PF08502 LeuA allosteric (dimerisation) domain smi_1218 PF00682 HMGL-like smi_1220 PF03932 CutC family smi_1221 PF04304 Protein of unknown function (DUF454) smi_1222 PF01131 DNA topoisomerase smi_1222 PF01751 Toprim domain smi_1222 PF01396 Topoisomerase DNA binding C4 zinc finger smi_1223 PF02481 DNA recombination-mediator protein A smi_1223 PF18255 DNA processing protein A sterile alpha motif domain smi_1224 PF12804 MobA-like NTP transferase domain smi_1227 PF08240 Alcohol dehydrogenase GroES-like domain smi_1228 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase smi_1230 PF04991 LicD family smi_1231 PF04991 LicD family smi_1232 PF01566 Natural resistance-associated macrophage protein smi_1233 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain smi_1233 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain smi_1233 PF02142 MGS-like domain smi_1234 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain smi_1234 PF00117 Glutamine amidotransferase class-I smi_1235 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain smi_1235 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain smi_1236 PF00156 Phosphoribosyl transferase domain smi_1237 PF00633 Helix-hairpin-helix motif smi_1237 PF00730 HhH-GPD superfamily base excision DNA repair protein smi_1237 PF10576 Iron-sulfur binding domain of endonuclease III smi_1240 PF00005 ABC transporter smi_1240 PF12848 ABC transporter smi_1240 PF16326 ABC transporter C-terminal domain smi_1241 PF01435 Peptidase family M48 smi_1242 PF04011 LemA family smi_1243 PF02527 rRNA small subunit methyltransferase G smi_1244 PF00860 Permease family smi_1247 PF04851 Type III restriction enzyme, res subunit smi_1247 PF08774 VRR-NUC domain smi_1249 PF18273 Type III R-M EcoP15I C-terminal domain smi_1249 PF01555 DNA methylase smi_1251 PF18337 RapA N-terminal Tudor like domain smi_1251 PF18339 RapA N-terminal Tudor like domain 1 smi_1251 PF00176 SNF2 family N-terminal domain smi_1251 PF12137 RNA polymerase recycling family C-terminal smi_1251 PF00271 Helicase conserved C-terminal domain smi_1252 PF02978 Signal peptide binding domain smi_1252 PF02881 SRP54-type protein, helical bundle domain smi_1252 PF00448 SRP54-type protein, GTPase domain smi_1253 PF04297 Putative helix-turn-helix protein, YlxM / p13 like smi_1255 PF01966 HD domain smi_1265 PF01245 Ribosomal protein L19 smi_1266 PF02537 CrcB-like protein, Camphor Resistance (CrcB) smi_1267 PF02537 CrcB-like protein, Camphor Resistance (CrcB) smi_1268 PF01842 ACT domain smi_1268 PF00800 Prephenate dehydratase smi_1268 PF01817 Chorismate mutase type II smi_1269 PF00258 Flavodoxin smi_1270 PF02272 DHHA1 domain smi_1270 PF01368 DHH family smi_1271 PF01197 Ribosomal protein L31 smi_1274 PF02416 mttA/Hcf106 family smi_1275 PF00902 Sec-independent protein translocase protein (TatC) smi_1276 PF03239 Iron permease FTR1 family smi_1277 PF10518 TAT (twin-arginine translocation) pathway signal sequence smi_1277 PF04261 Dyp-type peroxidase family smi_1278 PF09375 Imelysin smi_1279 PF00239 Resolvase, N terminal domain smi_1279 PF02796 Helix-turn-helix domain of resolvase smi_1283 PF02575 YbaB/EbfC DNA-binding family smi_1284 PF03009 Glycerophosphoryl diester phosphodiesterase family smi_1285 PF14480 DNA polymerase III polC-type N-terminus I smi_1285 PF11490 DNA polymerase III polC-type N-terminus II smi_1285 PF07733 Bacterial DNA polymerase III alpha NTPase domain smi_1285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain smi_1285 PF00929 Exonuclease smi_1285 PF02811 PHP domain smi_1287 PF08279 HTH domain smi_1287 PF04394 Protein of unknown function, DUF536 smi_1288 PF01048 Phosphorylase superfamily smi_1290 PF00293 NUDIX domain smi_1291 PF00132 Bacterial transferase hexapeptide (six repeats) smi_1291 PF14602 Hexapeptide repeat of succinyl-transferase smi_1291 PF00483 Nucleotidyl transferase smi_1294 PF04073 Aminoacyl-tRNA editing domain smi_1296 PF00152 tRNA synthetases class II (D, K and N) smi_1296 PF01336 OB-fold nucleic acid binding domain smi_1297 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1298 PF00005 ABC transporter smi_1299 PF00528 Binding-protein-dependent transport system inner membrane component smi_1301 PF01594 AI-2E family transporter smi_1302 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_1303 PF00665 Integrase core domain smi_1303 PF13936 Helix-turn-helix domain smi_1304 PF10282 Lactonase, 7-bladed beta-propeller smi_1305 PF13683 Integrase core domain smi_1305 PF01610 Transposase smi_1308 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain smi_1308 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain smi_1309 PF02874 ATP synthase alpha/beta family, beta-barrel domain smi_1309 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain smi_1310 PF00231 ATP synthase smi_1311 PF02874 ATP synthase alpha/beta family, beta-barrel domain smi_1311 PF00306 ATP synthase alpha/beta chain, C terminal domain smi_1311 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain smi_1312 PF00213 ATP synthase delta (OSCP) subunit smi_1313 PF00430 ATP synthase B/B' CF(0) smi_1314 PF00119 ATP synthase A chain smi_1315 PF00137 ATP synthase subunit C smi_1316 PF16325 Peptidase family U32 C-terminal domain smi_1316 PF01136 Peptidase family U32 smi_1317 PF00746 LPXTG cell wall anchor motif smi_1317 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region smi_1317 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region smi_1317 PF07501 G5 domain smi_1318 PF02463 RecF/RecN/SMC N terminal domain smi_1319 PF00580 UvrD/REP helicase N-terminal domain smi_1319 PF13361 UvrD-like helicase C-terminal domain smi_1324 PF18106 Rolling Circle replication initiation protein N-terminal domain smi_1324 PF02486 Replication initiation factor smi_1332 PF00877 NlpC/P60 family smi_1334 PF00679 Elongation factor G C-terminus smi_1334 PF14492 Elongation Factor G, domain II smi_1334 PF00009 Elongation factor Tu GTP binding domain smi_1334 PF03764 Elongation factor G, domain IV smi_1341 PF00589 Phage integrase family smi_1341 PF14659 Phage integrase, N-terminal SAM-like domain smi_1342 PF00117 Glutamine amidotransferase class-I smi_1342 PF00958 GMP synthase C terminal domain smi_1342 PF02540 NAD synthase smi_1343 PF07702 UTRA domain smi_1343 PF00392 Bacterial regulatory proteins, gntR family smi_1344 PF00892 EamA-like transporter family smi_1345 PF00144 Beta-lactamase smi_1347 PF00230 Major intrinsic protein smi_1353 PF02926 THUMP domain smi_1353 PF02568 Thiamine biosynthesis protein (ThiI) smi_1354 PF00266 Aminotransferase class-V smi_1356 PF17854 FtsK alpha domain smi_1356 PF09397 Ftsk gamma domain smi_1356 PF01580 FtsK/SpoIIIE family smi_1357 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit smi_1357 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 smi_1358 PF00294 pfkB family carbohydrate kinase smi_1359 PF00455 DeoR C terminal sensor domain smi_1359 PF08220 DeoR-like helix-turn-helix domain smi_1365 PF00665 Integrase core domain smi_1365 PF13333 Integrase core domain smi_1376 PF09587 Bacterial capsule synthesis protein PGA_cap smi_1377 PF01327 Polypeptide deformylase smi_1378 PF00588 SpoU rRNA Methylase family smi_1378 PF08032 RNA 2'-O ribose methyltransferase substrate binding smi_1379 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_1381 PF00005 ABC transporter smi_1382 PF00528 Binding-protein-dependent transport system inner membrane component smi_1383 PF03960 ArsC family smi_1384 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain smi_1384 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain smi_1387 PF03006 Haemolysin-III related smi_1388 PF01174 SNO glutamine amidotransferase family smi_1389 PF01680 SOR/SNZ family smi_1390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain smi_1390 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_1391 PF02424 ApbE family smi_1392 PF00890 FAD binding domain smi_1392 PF03358 NADPH-dependent FMN reductase smi_1392 PF04205 FMN-binding domain smi_1393 PF03358 NADPH-dependent FMN reductase smi_1393 PF00890 FAD binding domain smi_1393 PF04205 FMN-binding domain smi_1394 PF05979 Bacterial protein of unknown function (DUF896) smi_1395 PF02092 Glycyl-tRNA synthetase beta subunit smi_1396 PF02091 Glycyl-tRNA synthetase alpha subunit smi_1398 PF02225 PA domain smi_1398 PF06280 Fn3-like domain smi_1398 PF00082 Subtilase family smi_1399 PF01522 Polysaccharide deacetylase smi_1399 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain smi_1400 PF00438 S-adenosylmethionine synthetase, N-terminal domain smi_1400 PF02773 S-adenosylmethionine synthetase, C-terminal domain smi_1400 PF02772 S-adenosylmethionine synthetase, central domain smi_1402 PF00270 DEAD/DEAH box helicase smi_1402 PF00271 Helicase conserved C-terminal domain smi_1403 PF03372 Endonuclease/Exonuclease/phosphatase family smi_1404 PF02378 Phosphotransferase system, EIIC smi_1404 PF00367 phosphotransferase system, EIIB smi_1404 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 smi_1405 PF00665 Integrase core domain smi_1405 PF13936 Helix-turn-helix domain smi_1406 PF02687 FtsX-like permease family smi_1406 PF18075 FtsX extracellular domain smi_1407 PF00005 ABC transporter smi_1408 PF00472 RF-1 domain smi_1408 PF03462 PCRF domain smi_1409 PF13936 Helix-turn-helix domain smi_1409 PF00665 Integrase core domain smi_1410 PF01743 Poly A polymerase head domain smi_1410 PF00571 CBS domain smi_1411 PF00005 ABC transporter smi_1412 PF00005 ABC transporter smi_1412 PF12399 Branched-chain amino acid ATP-binding cassette transporter smi_1413 PF02653 Branched-chain amino acid transport system / permease component smi_1413 PF11862 Domain of unknown function (DUF3382) smi_1414 PF02653 Branched-chain amino acid transport system / permease component smi_1415 PF13458 Periplasmic binding protein smi_1416 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) smi_1417 PF00574 Clp protease smi_1419 PF00665 Integrase core domain smi_1419 PF13936 Helix-turn-helix domain smi_1420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region smi_1422 PF02645 Uncharacterised protein, DegV family COG1307 smi_1425 PF07739 TipAS antibiotic-recognition domain smi_1425 PF13411 MerR HTH family regulatory protein smi_1426 PF00209 Sodium:neurotransmitter symporter family smi_1427 PF01238 Phosphomannose isomerase type I smi_1429 PF00005 ABC transporter smi_1429 PF17850 CysA C-terminal regulatory domain smi_1429 PF12857 TOBE-like domain smi_1431 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain smi_1431 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain smi_1431 PF00205 Thiamine pyrophosphate enzyme, central domain smi_1432 PF00403 Heavy-metal-associated domain smi_1434 PF03965 Penicillinase repressor smi_1435 PF01070 FMN-dependent dehydrogenase smi_1436 PF00528 Binding-protein-dependent transport system inner membrane component smi_1437 PF00528 Binding-protein-dependent transport system inner membrane component smi_1438 PF00005 ABC transporter smi_1439 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1440 PF00005 ABC transporter smi_1445 PF00156 Phosphoribosyl transferase domain smi_1446 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family smi_1447 PF08478 POTRA domain, FtsQ-type smi_1448 PF04101 Glycosyltransferase family 28 C-terminal domain smi_1448 PF03033 Glycosyltransferase family 28 N-terminal domain smi_1449 PF02875 Mur ligase family, glutamate ligase domain smi_1449 PF08245 Mur ligase middle domain smi_1450 PF00005 ABC transporter smi_1452 PF01610 Transposase smi_1452 PF13683 Integrase core domain smi_1453 PF00009 Elongation factor Tu GTP binding domain smi_1453 PF14492 Elongation Factor G, domain II smi_1453 PF03144 Elongation factor Tu domain 2 smi_1453 PF00679 Elongation factor G C-terminus smi_1454 PF01479 S4 domain smi_1454 PF00849 RNA pseudouridylate synthase smi_1455 PF00581 Rhodanese-like domain smi_1457 PF00072 Response regulator receiver domain smi_1457 PF00196 Bacterial regulatory proteins, luxR family smi_1460 PF00005 ABC transporter smi_1461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family smi_1461 PF03466 LysR substrate binding domain smi_1463 PF17866 AAA lid domain smi_1463 PF00004 ATPase family associated with various cellular activities (AAA) smi_1467 PF01473 Putative cell wall binding repeat smi_1467 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase smi_1467 PF17890 Peptidoglycan hydrolase LytB WW-like domain smi_1467 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain smi_1471 PF00106 short chain dehydrogenase smi_1472 PF00753 Metallo-beta-lactamase superfamily smi_1472 PF12706 Beta-lactamase superfamily domain smi_1473 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain smi_1473 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain smi_1474 PF16360 GTP-binding GTPase Middle Region smi_1474 PF13167 GTP-binding GTPase N-terminal smi_1474 PF01926 50S ribosome-binding GTPase smi_1477 PF00303 Thymidylate synthase smi_1478 PF00480 ROK family smi_1481 PF04715 Anthranilate synthase component I, N terminal region smi_1481 PF00425 chorismate binding enzyme smi_1482 PF07501 G5 domain smi_1482 PF00746 LPXTG cell wall anchor motif smi_1482 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region smi_1482 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region smi_1483 PF04260 Protein of unknown function (DUF436) smi_1484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_1484 PF06580 Histidine kinase smi_1484 PF02743 Cache domain smi_1484 PF00672 HAMP domain smi_1485 PF00072 Response regulator receiver domain smi_1485 PF12833 Helix-turn-helix domain smi_1486 PF01641 SelR domain smi_1486 PF01625 Peptide methionine sulfoxide reductase smi_1487 PF08534 Redoxin smi_1488 PF02683 Cytochrome C biogenesis protein transmembrane region smi_1490 PF13302 Acetyltransferase (GNAT) domain smi_1491 PF02540 NAD synthase smi_1492 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family smi_1492 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain smi_1492 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain smi_1496 PF00583 Acetyltransferase (GNAT) family smi_1497 PF00324 Amino acid permease smi_1498 PF01272 Transcription elongation factor, GreA/GreB, C-term smi_1498 PF03449 Transcription elongation factor, N-terminal smi_1499 PF02618 YceG-like family smi_1502 PF02875 Mur ligase family, glutamate ligase domain smi_1502 PF08245 Mur ligase middle domain smi_1502 PF01225 Mur ligase family, catalytic domain smi_1504 PF00176 SNF2 family N-terminal domain smi_1504 PF12419 SNF2 Helicase protein smi_1504 PF00271 Helicase conserved C-terminal domain smi_1507 PF00155 Aminotransferase class I and II smi_1508 PF01053 Cys/Met metabolism PLP-dependent enzyme smi_1510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_1511 PF14667 Polysaccharide biosynthesis C-terminal domain smi_1511 PF01943 Polysaccharide biosynthesis protein smi_1512 PF02875 Mur ligase family, glutamate ligase domain smi_1512 PF08245 Mur ligase middle domain smi_1513 PF05532 CsbD-like smi_1516 PF02833 DHHA2 domain smi_1516 PF01368 DHH family smi_1517 PF01541 GIY-YIG catalytic domain smi_1518 PF05175 Methyltransferase small domain smi_1519 PF00575 S1 RNA binding domain smi_1520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD smi_1521 PF01084 Ribosomal protein S18 smi_1522 PF00436 Single-strand binding protein family smi_1523 PF01250 Ribosomal protein S6 smi_1524 PF13936 Helix-turn-helix domain smi_1524 PF00665 Integrase core domain smi_1525 PF01336 OB-fold nucleic acid binding domain smi_1525 PF00152 tRNA synthetases class II (D, K and N) smi_1527 PF00155 Aminotransferase class I and II smi_1530 PF03358 NADPH-dependent FMN reductase smi_1531 PF04650 YSIRK type signal peptide smi_1531 PF06458 MucBP domain smi_1531 PF00746 LPXTG cell wall anchor motif smi_1532 PF08270 M protein trans-acting positive regulator (MGA) PRD domain smi_1532 PF05043 Mga helix-turn-helix domain smi_1532 PF08280 M protein trans-acting positive regulator (MGA) HTH domain smi_1533 PF03883 Peroxide stress protein YaaA smi_1534 PF16355 Domain of unknown function (DUF4982) smi_1534 PF02837 Glycosyl hydrolases family 2, sugar binding domain smi_1534 PF02836 Glycosyl hydrolases family 2, TIM barrel domain smi_1534 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 smi_1534 PF00703 Glycosyl hydrolases family 2 smi_1535 PF13683 Integrase core domain smi_1535 PF01610 Transposase smi_1537 PF00754 F5/8 type C domain smi_1537 PF00404 Dockerin type I domain smi_1537 PF02838 Glycosyl hydrolase family 20, domain 2 smi_1537 PF07555 beta-N-acetylglucosaminidase smi_1538 PF18080 Galactose mutarotase-like fold domain smi_1538 PF00754 F5/8 type C domain smi_1538 PF18080 Galactose mutarotase-like fold domain smi_1538 PF17974 Galactose-binding domain-like smi_1538 PF17451 Glycosyl hydrolase 101 beta sandwich domain smi_1538 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal smi_1538 PF17451 Glycosyl hydrolase 101 beta sandwich domain smi_1538 PF00754 F5/8 type C domain smi_1538 PF04650 YSIRK type signal peptide smi_1538 PF12905 Endo-alpha-N-acetylgalactosaminidase smi_1538 PF04650 YSIRK type signal peptide smi_1538 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal smi_1538 PF17974 Galactose-binding domain-like smi_1538 PF12905 Endo-alpha-N-acetylgalactosaminidase smi_1539 PF03883 Peroxide stress protein YaaA smi_1542 PF01327 Polypeptide deformylase smi_1543 PF00689 Cation transporting ATPase, C-terminus smi_1543 PF00690 Cation transporter/ATPase, N-terminus smi_1544 PF16916 Dimerisation domain of Zinc Transporter smi_1544 PF01545 Cation efflux family smi_1545 PF12848 ABC transporter smi_1545 PF16326 ABC transporter C-terminal domain smi_1545 PF00005 ABC transporter smi_1546 PF13735 tRNA nucleotidyltransferase domain 2 putative smi_1546 PF12627 Probable RNA and SrmB- binding site of polymerase A smi_1546 PF01743 Poly A polymerase head domain smi_1547 PF05173 Dihydrodipicolinate reductase, C-terminus smi_1547 PF01113 Dihydrodipicolinate reductase, N-terminus smi_1548 PF02645 Uncharacterised protein, DegV family COG1307 smi_1550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I smi_1550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II smi_1550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III smi_1550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain smi_1552 PF02457 DisA bacterial checkpoint controller nucleotide-binding smi_1553 PF07992 Pyridine nucleotide-disulphide oxidoreductase smi_1554 PF02650 WhiA C-terminal HTH domain smi_1554 PF10298 WhiA N-terminal LAGLIDADG-like domain smi_1554 PF14527 WhiA LAGLIDADG-like domain smi_1555 PF01933 Uncharacterised protein family UPF0052 smi_1556 PF03668 P-loop ATPase protein family smi_1557 PF01042 Endoribonuclease L-PSP smi_1558 PF01926 50S ribosome-binding GTPase smi_1559 PF10431 C-terminal, D2-small domain, of ClpB protein smi_1559 PF07724 AAA domain (Cdc48 subfamily) smi_1559 PF06689 ClpX C4-type zinc finger smi_1561 PF00186 Dihydrofolate reductase smi_1562 PF00210 Ferritin-like domain smi_1564 PF00121 Triosephosphate isomerase smi_1565 PF07261 Replication initiation and membrane attachment smi_1566 PF04204 Homoserine O-succinyltransferase smi_1567 PF00156 Phosphoribosyl transferase domain smi_1568 PF13649 Methyltransferase domain smi_1569 PF00687 Ribosomal protein L1p/L10e family smi_1570 PF03946 Ribosomal protein L11, N-terminal domain smi_1570 PF00298 Ribosomal protein L11, RNA binding domain smi_1573 PF05343 M42 glutamyl aminopeptidase smi_1574 PF05525 Branched-chain amino acid transport protein smi_1575 PF00581 Rhodanese-like domain smi_1576 PF03167 Uracil DNA glycosylase superfamily smi_1577 PF01546 Peptidase family M20/M25/M40 smi_1578 PF00881 Nitroreductase family smi_1579 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1581 PF01541 GIY-YIG catalytic domain smi_1581 PF08459 UvrC Helix-hairpin-helix N-terminal smi_1581 PF02151 UvrB/uvrC motif smi_1585 PF00756 Putative esterase smi_1586 PF00753 Metallo-beta-lactamase superfamily smi_1586 PF17770 Ribonuclease J C-terminal domain smi_1586 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain smi_1587 PF10141 Single-strand DNA-specific exonuclease, C terminal domain smi_1587 PF01368 DHH family smi_1587 PF02272 DHHA1 domain smi_1587 PF17768 RecJ OB domain smi_1588 PF00005 ABC transporter smi_1589 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1590 PF00528 Binding-protein-dependent transport system inner membrane component smi_1591 PF00528 Binding-protein-dependent transport system inner membrane component smi_1592 PF17912 MalK OB fold domain smi_1592 PF03459 TOBE domain smi_1592 PF00005 ABC transporter smi_1593 PF13556 PucR C-terminal helix-turn-helix domain smi_1594 PF00636 Ribonuclease III domain smi_1595 PF01406 tRNA synthetases class I (C) catalytic domain smi_1595 PF09190 DALR domain smi_1596 PF00583 Acetyltransferase (GNAT) family smi_1596 PF13508 Acetyltransferase (GNAT) domain smi_1597 PF00132 Bacterial transferase hexapeptide (six repeats) smi_1597 PF06426 Serine acetyltransferase, N-terminal smi_1598 PF03725 3' exoribonuclease family, domain 2 smi_1598 PF01138 3' exoribonuclease family, domain 1 smi_1598 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain smi_1598 PF00013 KH domain smi_1598 PF00575 S1 RNA binding domain smi_1599 PF02219 Methylenetetrahydrofolate reductase smi_1600 PF08267 Cobalamin-independent synthase, N-terminal domain smi_1600 PF01717 Cobalamin-independent synthase, Catalytic domain smi_1604 PF18766 SWI2/SNF2 ATPase smi_1604 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) smi_1604 PF12008 Type I restriction and modification enzyme - subunit R C terminal smi_1605 PF01420 Type I restriction modification DNA specificity domain smi_1606 PF01420 Type I restriction modification DNA specificity domain smi_1607 PF01420 Type I restriction modification DNA specificity domain smi_1609 PF12161 HsdM N-terminal domain smi_1609 PF02384 N-6 DNA Methylase smi_1614 PF00480 ROK family smi_1615 PF00367 phosphotransferase system, EIIB smi_1615 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 smi_1615 PF02378 Phosphotransferase system, EIIC smi_1616 PF00251 Glycosyl hydrolases family 32 N-terminal domain smi_1616 PF08244 Glycosyl hydrolases family 32 C terminal smi_1617 PF00356 Bacterial regulatory proteins, lacI family smi_1618 PF00368 Hydroxymethylglutaryl-coenzyme A reductase smi_1619 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal smi_1619 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal smi_1622 PF00069 Protein kinase domain smi_1622 PF03793 PASTA domain smi_1624 PF01029 NusB family smi_1624 PF01189 16S rRNA methyltransferase RsmB/F smi_1625 PF00551 Formyl transferase smi_1625 PF02911 Formyl transferase, C-terminal domain smi_1626 PF00271 Helicase conserved C-terminal domain smi_1626 PF18074 Primosomal protein N C-terminal domain smi_1626 PF18319 PriA DNA helicase Cys-rich region (CRR) domain smi_1626 PF04851 Type III restriction enzyme, res subunit smi_1626 PF17764 3′ DNA-binding domain (3′BD) smi_1627 PF01192 RNA polymerase Rpb6 smi_1628 PF00625 Guanylate kinase smi_1630 PF00013 KH domain smi_1630 PF01966 HD domain smi_1630 PF12072 Domain of unknown function (DUF3552) smi_1632 PF05636 HIGH Nucleotidyl Transferase smi_1633 PF13649 Methyltransferase domain smi_1636 PF01966 HD domain smi_1637 PF01467 Cytidylyltransferase-like smi_1638 PF01985 CRS1 / YhbY (CRM) domain smi_1639 PF01926 50S ribosome-binding GTPase smi_1642 PF00924 Mechanosensitive ion channel smi_1643 PF00375 Sodium:dicarboxylate symporter family smi_1646 PF16996 Accessory secretory protein Sec Asp4 smi_1648 PF00534 Glycosyl transferases group 1 smi_1649 PF07517 SecA DEAD-like domain smi_1649 PF01043 SecA preprotein cross-linking domain smi_1649 PF07516 SecA Wing and Scaffold domain smi_1651 PF16929 Accessory Sec system GspB-transporter smi_1652 PF16993 Accessory Sec system protein Asp1 smi_1653 PF00344 SecY translocase smi_1654 PF00535 Glycosyl transferase family 2 smi_1655 PF01501 Glycosyl transferase family 8 smi_1656 PF01501 Glycosyl transferase family 8 smi_1657 PF01501 Glycosyl transferase family 8 smi_1657 PF00535 Glycosyl transferase family 2 smi_1658 PF08759 Glycosyltransferase GT-D fold smi_1658 PF01501 Glycosyl transferase family 8 smi_1660 PF01501 Glycosyl transferase family 8 smi_1661 PF01501 Glycosyl transferase family 8 smi_1661 PF00535 Glycosyl transferase family 2 smi_1662 PF00746 LPXTG cell wall anchor motif smi_1663 PF00009 Elongation factor Tu GTP binding domain smi_1663 PF03144 Elongation factor Tu domain 2 smi_1663 PF16658 Class II release factor RF3, C-terminal domain smi_1665 PF02686 Glu-tRNAGln amidotransferase C subunit smi_1666 PF01425 Amidase smi_1667 PF02637 GatB domain smi_1667 PF02934 GatB/GatE catalytic domain smi_1669 PF01132 Elongation factor P (EF-P) OB domain smi_1669 PF08207 Elongation factor P (EF-P) KOW-like domain smi_1669 PF09285 Elongation factor P, C-terminal smi_1670 PF03780 Asp23 family, cell envelope-related function smi_1671 PF01029 NusB family smi_1674 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit smi_1675 PF01039 Carboxyl transferase domain smi_1676 PF02785 Biotin carboxylase C-terminal domain smi_1676 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain smi_1676 PF00289 Biotin carboxylase, N-terminal domain smi_1677 PF07977 FabA-like domain smi_1678 PF00364 Biotin-requiring enzyme smi_1679 PF02801 Beta-ketoacyl synthase, C-terminal domain smi_1679 PF00109 Beta-ketoacyl synthase, N-terminal domain smi_1681 PF00698 Acyl transferase domain smi_1682 PF03060 Nitronate monooxygenase smi_1683 PF00550 Phosphopantetheine attachment site smi_1684 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal smi_1684 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III smi_1686 PF00378 Enoyl-CoA hydratase/isomerase smi_1687 PF13840 ACT domain smi_1687 PF00696 Amino acid kinase family smi_1689 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) smi_1689 PF02403 Seryl-tRNA synthetase N-terminal domain smi_1690 PF01610 Transposase smi_1690 PF13683 Integrase core domain smi_1695 PF00877 NlpC/P60 family smi_1697 PF12833 Helix-turn-helix domain smi_1697 PF06445 GyrI-like small molecule binding domain smi_1698 PF00664 ABC transporter transmembrane region smi_1698 PF04954 Siderophore-interacting protein smi_1698 PF08021 Siderophore-interacting FAD-binding domain smi_1698 PF00005 ABC transporter smi_1704 PF01636 Phosphotransferase enzyme family smi_1705 PF00583 Acetyltransferase (GNAT) family smi_1707 PF13280 WYL domain smi_1707 PF08279 HTH domain smi_1708 PF01636 Phosphotransferase enzyme family smi_1709 PF00583 Acetyltransferase (GNAT) family smi_1710 PF04439 Streptomycin adenylyltransferase smi_1711 PF08241 Methyltransferase domain smi_1713 PF07508 Recombinase smi_1713 PF13408 Recombinase zinc beta ribbon domain smi_1715 PF00239 Resolvase, N terminal domain smi_1715 PF02796 Helix-turn-helix domain of resolvase smi_1718 PF00005 ABC transporter smi_1719 PF08361 MAATS-type transcriptional repressor, C-terminal region smi_1719 PF00440 Bacterial regulatory proteins, tetR family smi_1722 PF01235 Sodium:alanine symporter family smi_1724 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain smi_1724 PF17890 Peptidoglycan hydrolase LytB WW-like domain smi_1724 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase smi_1724 PF01473 Putative cell wall binding repeat smi_1725 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain smi_1725 PF17890 Peptidoglycan hydrolase LytB WW-like domain smi_1725 PF01473 Putative cell wall binding repeat smi_1725 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase smi_1728 PF01025 GrpE smi_1730 PF00012 Hsp70 protein smi_1733 PF01713 Smr domain smi_1733 PF00488 MutS domain V smi_1736 PF01351 Ribonuclease HII smi_1736 PF11858 Domain of unknown function (DUF3378) smi_1737 PF10502 Signal peptidase, peptidase S26 smi_1738 PF13538 UvrD-like helicase C-terminal domain smi_1738 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain smi_1738 PF14490 Helix-hairpin-helix containing domain smi_1739 PF05697 Bacterial trigger factor protein (TF) smi_1739 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase smi_1739 PF05698 Bacterial trigger factor protein (TF) C-terminus smi_1741 PF00072 Response regulator receiver domain smi_1741 PF00196 Bacterial regulatory proteins, luxR family smi_1742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_1742 PF07730 Histidine kinase smi_1744 PF01070 FMN-dependent dehydrogenase smi_1745 PF00288 GHMP kinases N terminal domain smi_1745 PF08544 GHMP kinases C terminal smi_1747 PF08544 GHMP kinases C terminal smi_1747 PF00288 GHMP kinases N terminal domain smi_1747 PF10509 Galactokinase galactose-binding signature smi_1749 PF00072 Response regulator receiver domain smi_1749 PF00486 Transcriptional regulatory protein, C terminal smi_1750 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain smi_1750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase smi_1751 PF18708 MapZ extracellular C-terminal domain 2 smi_1751 PF18041 MapZ extracellular domain 1 smi_1752 PF02926 THUMP domain smi_1752 PF01170 Putative RNA methylase family UPF0020 smi_1754 PF05103 DivIVA protein smi_1755 PF06908 YspA SLOG family smi_1756 PF03838 Recombination protein U smi_1757 PF00912 Transglycosylase smi_1757 PF00905 Penicillin binding protein transpeptidase domain smi_1758 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle smi_1759 PF03275 UDP-galactopyranose mutase smi_1761 PF16657 Maltogenic Amylase, C-terminal domain smi_1761 PF00128 Alpha amylase, catalytic domain smi_1762 PF08903 Domain of unknown function (DUF1846) smi_1763 PF02664 S-Ribosylhomocysteinase (LuxS) smi_1764 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) smi_1765 PF10431 C-terminal, D2-small domain, of ClpB protein smi_1765 PF17871 AAA lid domain smi_1765 PF07724 AAA domain (Cdc48 subfamily) smi_1765 PF00004 ATPase family associated with various cellular activities (AAA) smi_1766 PF00953 Glycosyl transferase family 4 smi_1766 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 smi_1767 PF00905 Penicillin binding protein transpeptidase domain smi_1767 PF03717 Penicillin-binding Protein dimerisation domain smi_1767 PF03793 PASTA domain smi_1769 PF01795 MraW methylase family smi_1774 PF00255 Glutathione peroxidase smi_1777 PF11798 IMS family HHH motif smi_1777 PF11799 impB/mucB/samB family C-terminal domain smi_1777 PF00817 impB/mucB/samB family smi_1778 PF01381 Helix-turn-helix smi_1779 PF00854 POT family smi_1780 PF13173 AAA domain smi_1780 PF13635 Domain of unknown function (DUF4143) smi_1784 PF07690 Major Facilitator Superfamily smi_1796 PF00380 Ribosomal protein S9/S16 smi_1797 PF00572 Ribosomal protein L13 smi_1798 PF00665 Integrase core domain smi_1798 PF13936 Helix-turn-helix domain smi_1800 PF13732 Domain of unknown function (DUF4162) smi_1800 PF00005 ABC transporter smi_1801 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain smi_1801 PF01588 Putative tRNA binding domain smi_1801 PF03484 tRNA synthetase B5 domain smi_1801 PF03483 B3/4 domain smi_1801 PF03147 Ferredoxin-fold anticodon binding domain smi_1803 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain smi_1803 PF01409 tRNA synthetases class II core domain (F) smi_1806 PF01569 PAP2 superfamily smi_1807 PF12822 ECF transporter, substrate-specific component smi_1808 PF00588 SpoU rRNA Methylase family smi_1810 PF00005 ABC transporter smi_1810 PF12558 ATP-binding cassette cobalt transporter smi_1811 PF07155 ECF-type riboflavin transporter, S component smi_1813 PF02080 TrkA-C domain smi_1813 PF02254 TrkA-N domain smi_1814 PF02386 Cation transport protein smi_1815 PF02901 Pyruvate formate lyase-like smi_1815 PF01228 Glycine radical smi_1816 PF11798 IMS family HHH motif smi_1816 PF00817 impB/mucB/samB family smi_1816 PF11799 impB/mucB/samB family C-terminal domain smi_1817 PF02673 Bacitracin resistance protein BacA smi_1819 PF00528 Binding-protein-dependent transport system inner membrane component smi_1820 PF00005 ABC transporter smi_1822 PF00585 C-terminal regulatory domain of Threonine dehydratase smi_1822 PF00291 Pyridoxal-phosphate dependent enzyme smi_1823 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain smi_1823 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain smi_1824 PF01842 ACT domain smi_1824 PF10369 Small subunit of acetolactate synthase smi_1825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain smi_1825 PF00205 Thiamine pyrophosphate enzyme, central domain smi_1825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain smi_1826 PF13684 Dihydroxyacetone kinase family smi_1826 PF02734 DAK2 domain smi_1827 PF03780 Asp23 family, cell envelope-related function smi_1828 PF00830 Ribosomal L28 family smi_1829 PF00665 Integrase core domain smi_1829 PF13936 Helix-turn-helix domain smi_1830 PF13936 Helix-turn-helix domain smi_1830 PF00665 Integrase core domain smi_1834 PF00664 ABC transporter transmembrane region smi_1834 PF00005 ABC transporter smi_1835 PF00005 ABC transporter smi_1835 PF00664 ABC transporter transmembrane region smi_1837 PF01709 Transcriptional regulator smi_1839 PF00154 recA bacterial DNA recombination protein smi_1840 PF00994 Probable molybdopterin binding domain smi_1840 PF18146 Damage-inducible protein CinA KH domain smi_1840 PF02464 Competence-damaged protein smi_1841 PF03816 Cell envelope-related transcriptional attenuator domain smi_1843 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE smi_1845 PF00334 Nucleoside diphosphate kinase smi_1846 PF00623 RNA polymerase Rpb1, domain 2 smi_1846 PF04998 RNA polymerase Rpb1, domain 5 smi_1846 PF05000 RNA polymerase Rpb1, domain 4 smi_1846 PF04997 RNA polymerase Rpb1, domain 1 smi_1846 PF04983 RNA polymerase Rpb1, domain 3 smi_1847 PF00562 RNA polymerase Rpb2, domain 6 smi_1847 PF04563 RNA polymerase beta subunit smi_1847 PF04561 RNA polymerase Rpb2, domain 2 smi_1847 PF04565 RNA polymerase Rpb2, domain 3 smi_1847 PF10385 RNA polymerase beta subunit external 1 domain smi_1847 PF04560 RNA polymerase Rpb2, domain 7 smi_1848 PF00128 Alpha amylase, catalytic domain smi_1848 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) smi_1848 PF03714 Bacterial pullanase-associated domain smi_1850 PF01380 SIS domain smi_1851 PF00232 Glycosyl hydrolase family 1 smi_1852 PF03129 Anticodon binding domain smi_1852 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) smi_1852 PF04073 Aminoacyl-tRNA editing domain smi_1853 PF02163 Peptidase family M50 smi_1855 PF01255 Putative undecaprenyl diphosphate synthase smi_1856 PF00665 Integrase core domain smi_1856 PF13936 Helix-turn-helix domain smi_1860 PF05496 Holliday junction DNA helicase RuvB P-loop domain smi_1860 PF17864 RuvB AAA lid domain smi_1860 PF05491 RuvB C-terminal winged helix domain smi_1869 PF04397 LytTr DNA-binding domain smi_1869 PF00072 Response regulator receiver domain smi_1871 PF00005 ABC transporter smi_1871 PF13732 Domain of unknown function (DUF4162) smi_1872 PF09334 tRNA synthetases class I (M) smi_1872 PF00133 tRNA synthetases class I (I, L, M and V) smi_1872 PF13603 Leucyl-tRNA synthetase, Domain 2 smi_1872 PF08264 Anticodon-binding domain of tRNA smi_1876 PF05167 Uncharacterised ACR (DUF711) smi_1878 PF01196 Ribosomal protein L17 smi_1879 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain smi_1879 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain smi_1879 PF01000 RNA polymerase Rpb3/RpoA insert domain smi_1880 PF00411 Ribosomal protein S11 smi_1881 PF00416 Ribosomal protein S13/S18 smi_1882 PF00444 Ribosomal protein L36 smi_1883 PF01176 Translation initiation factor 1A / IF-1 smi_1885 PF00344 SecY translocase smi_1886 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A smi_1887 PF00327 Ribosomal protein L30p/L7e smi_1888 PF00333 Ribosomal protein S5, N-terminal domain smi_1888 PF03719 Ribosomal protein S5, C-terminal domain smi_1889 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast smi_1890 PF00347 Ribosomal protein L6 smi_1891 PF00410 Ribosomal protein S8 smi_1892 PF00253 Ribosomal protein S14p/S29e smi_1893 PF00281 Ribosomal protein L5 smi_1893 PF00673 ribosomal L5P family C-terminus smi_1894 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 smi_1894 PF00467 KOW motif smi_1895 PF00238 Ribosomal protein L14p/L23e smi_1896 PF00366 Ribosomal protein S17 smi_1897 PF00831 Ribosomal L29 protein smi_1898 PF00252 Ribosomal protein L16p/L10e smi_1899 PF07650 KH domain smi_1899 PF00189 Ribosomal protein S3, C-terminal domain smi_1900 PF00237 Ribosomal protein L22p/L17e smi_1901 PF00203 Ribosomal protein S19 smi_1902 PF00181 Ribosomal Proteins L2, RNA binding domain smi_1902 PF03947 Ribosomal Proteins L2, C-terminal domain smi_1903 PF00276 Ribosomal protein L23 smi_1904 PF00573 Ribosomal protein L4/L1 family smi_1905 PF00297 Ribosomal protein L3 smi_1906 PF00338 Ribosomal protein S10p/S20e smi_1907 PF13936 Helix-turn-helix domain smi_1907 PF00665 Integrase core domain smi_1912 PF13597 Anaerobic ribonucleoside-triphosphate reductase smi_1912 PF03477 ATP cone domain smi_1915 PF13091 PLD-like domain smi_1917 PF02875 Mur ligase family, glutamate ligase domain smi_1917 PF08245 Mur ligase middle domain smi_1918 PF06949 Protein of unknown function (DUF1292) smi_1919 PF03652 Holliday junction resolvase smi_1920 PF06135 IreB regulatory phosphoprotein smi_1922 PF03960 ArsC family smi_1923 PF00689 Cation transporting ATPase, C-terminus smi_1923 PF00690 Cation transporter/ATPase, N-terminus smi_1924 PF00557 Metallopeptidase family M24 smi_1924 PF01321 Creatinase/Prolidase N-terminal domain smi_1925 PF17760 UvrA interaction domain smi_1925 PF00005 ABC transporter smi_1925 PF17755 UvrA DNA-binding domain smi_1929 PF03352 Methyladenine glycosylase smi_1930 PF01330 RuvA N terminal domain smi_1930 PF07499 RuvA, C-terminal domain smi_1931 PF08676 MutL C terminal dimerisation domain smi_1931 PF01119 DNA mismatch repair protein, C-terminal domain smi_1933 PF04397 LytTr DNA-binding domain smi_1935 PF07972 NrdI Flavodoxin like smi_1937 PF00072 Response regulator receiver domain smi_1937 PF12833 Helix-turn-helix domain smi_1938 PF06580 Histidine kinase smi_1938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase smi_1938 PF02743 Cache domain smi_1938 PF00672 HAMP domain smi_1941 PF00528 Binding-protein-dependent transport system inner membrane component smi_1942 PF00005 ABC transporter smi_1942 PF09383 NIL domain smi_1943 PF01546 Peptidase family M20/M25/M40 smi_1943 PF07687 Peptidase dimerisation domain smi_1944 PF03180 NLPA lipoprotein smi_1945 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1946 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1950 PF01381 Helix-turn-helix smi_1951 PF00814 Glycoprotease family smi_1953 PF00814 Glycoprotease family smi_1954 PF13936 Helix-turn-helix domain smi_1954 PF00665 Integrase core domain smi_1959 PF07288 Protein of unknown function (DUF1447) smi_1960 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain smi_1960 PF00753 Metallo-beta-lactamase superfamily smi_1960 PF17770 Ribonuclease J C-terminal domain smi_1961 PF01134 Glucose inhibited division protein A smi_1961 PF13932 GidA associated domain smi_1962 PF00293 NUDIX domain smi_1964 PF00665 Integrase core domain smi_1964 PF13936 Helix-turn-helix domain smi_1967 PF00206 Lyase smi_1967 PF14698 Argininosuccinate lyase C-terminal smi_1968 PF00764 Arginosuccinate synthase smi_1969 PF00497 Bacterial extracellular solute-binding proteins, family 3 smi_1970 PF00005 ABC transporter smi_1970 PF02687 FtsX-like permease family smi_1970 PF12704 MacB-like periplasmic core domain smi_1973 PF00005 ABC transporter smi_1977 PF01381 Helix-turn-helix smi_1978 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase smi_1978 PF01476 LysM domain smi_1979 PF01842 ACT domain smi_1979 PF03315 Serine dehydratase beta chain smi_1980 PF03313 Serine dehydratase alpha chain smi_1981 PF13419 Haloacid dehalogenase-like hydrolase smi_1982 PF02719 Polysaccharide biosynthesis protein smi_1983 PF00535 Glycosyl transferase family 2 smi_1985 PF10400 Virulence activator alpha C-term smi_1985 PF03551 Transcriptional regulator PadR-like family smi_1990 PF17773 UPF0176 acylphosphatase like domain smi_1990 PF12368 Rhodanase C-terminal smi_1990 PF00581 Rhodanese-like domain smi_1993 PF12010 Domain of unknown function (DUF3502) smi_1994 PF00528 Binding-protein-dependent transport system inner membrane component smi_1995 PF00528 Binding-protein-dependent transport system inner membrane component smi_1997 PF00480 ROK family smi_1998 PF01074 Glycosyl hydrolases family 38 N-terminal domain smi_1998 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 smi_1998 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain smi_1998 PF09261 Alpha mannosidase middle domain smi_1998 PF07748 Glycosyl hydrolases family 38 C-terminal domain smi_2017 PF14659 Phage integrase, N-terminal SAM-like domain smi_2017 PF00589 Phage integrase family smi_2018 PF07971 Glycosyl hydrolase family 92 smi_2018 PF17678 Glycosyl hydrolase family 92 N-terminal domain smi_2021 PF16355 Domain of unknown function (DUF4982) smi_2021 PF02836 Glycosyl hydrolases family 2, TIM barrel domain smi_2021 PF00703 Glycosyl hydrolases family 2 smi_2021 PF02837 Glycosyl hydrolases family 2, sugar binding domain smi_2021 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 smi_2023 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) smi_2024 PF01297 Zinc-uptake complex component A periplasmic smi_2024 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment smi_2025 PF00950 ABC 3 transport family smi_2026 PF00005 ABC transporter smi_2027 PF01047 MarR family smi_2028 PF04914 DltD protein smi_2029 PF00550 Phosphopantetheine attachment site smi_2030 PF03062 MBOAT, membrane-bound O-acyltransferase family smi_2031 PF00501 AMP-binding enzyme smi_2031 PF13193 AMP-binding enzyme C-terminal domain smi_2032 PF07690 Major Facilitator Superfamily smi_2033 PF00230 Major intrinsic protein smi_2034 PF16901 C-terminal domain of alpha-glycerophosphate oxidase smi_2034 PF01266 FAD dependent oxidoreductase smi_2035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain smi_2035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain smi_2037 PF01430 Hsp33 protein smi_2038 PF01207 Dihydrouridine synthase (Dus) smi_2043 PF04973 Nicotinamide mononucleotide transporter smi_2044 PF01467 Cytidylyltransferase-like smi_2045 PF07724 AAA domain (Cdc48 subfamily) smi_2045 PF00004 ATPase family associated with various cellular activities (AAA) smi_2045 PF02861 Clp amino terminal domain, pathogenicity island component smi_2045 PF10431 C-terminal, D2-small domain, of ClpB protein smi_2045 PF17871 AAA lid domain smi_2046 PF05848 CtsR N-terminal HTH domain smi_2046 PF17727 CtsR C-terminal dimerization domain smi_2047 PF00005 ABC transporter smi_2048 PF09084 NMT1/THI5 like smi_2049 PF00528 Binding-protein-dependent transport system inner membrane component smi_2051 PF01476 LysM domain smi_2051 PF05257 CHAP domain smi_2053 PF03796 DnaB-like helicase C terminal domain smi_2053 PF00772 DnaB-like helicase N terminal domain smi_2054 PF03948 Ribosomal protein L9, C-terminal domain smi_2054 PF01281 Ribosomal protein L9, N-terminal domain smi_2055 PF02272 DHHA1 domain smi_2055 PF01368 DHH family smi_2056 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus smi_2056 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein smi_2057 PF00156 Phosphoribosyl transferase domain smi_2058 PF04851 Type III restriction enzyme, res subunit smi_2058 PF00271 Helicase conserved C-terminal domain smi_2059 PF09186 Domain of unknown function (DUF1949) smi_2059 PF01205 Uncharacterized protein family UPF0029 smi_2060 PF00291 Pyridoxal-phosphate dependent enzyme smi_2061 PF00889 Elongation factor TS smi_2062 PF00318 Ribosomal protein S2 smi_2063 PF05257 CHAP domain smi_2063 PF01476 LysM domain smi_2065 PF04085 rod shape-determining protein MreC smi_2066 PF02361 Cobalt transport protein smi_2067 PF00005 ABC transporter smi_2068 PF00005 ABC transporter smi_2069 PF01066 CDP-alcohol phosphatidyltransferase smi_2071 PF00675 Insulinase (Peptidase family M16) smi_2071 PF05193 Peptidase M16 inactive domain smi_2072 PF05193 Peptidase M16 inactive domain smi_2072 PF00675 Insulinase (Peptidase family M16) smi_2074 PF02463 RecF/RecN/SMC N terminal domain smi_2075 PF00478 IMP dehydrogenase / GMP reductase domain smi_2075 PF00571 CBS domain smi_2076 PF00579 tRNA synthetases class I (W and Y) smi_2077 PF12848 ABC transporter smi_2077 PF00005 ABC transporter smi_2085 PF03047 COMC family smi_2087 PF02590 Predicted SPOUT methyltransferase smi_2088 PF13180 PDZ domain smi_2089 PF02195 ParB-like nuclease domain smi_2089 PF17762 HTH domain found in ParB protein