smi_0001	PF00308	Bacterial dnaA  protein
smi_0001	PF08299	Bacterial dnaA protein helix-turn-helix
smi_0002	PF00712	DNA polymerase III beta subunit, N-terminal domain
smi_0002	PF02767	DNA polymerase III beta subunit, central domain
smi_0002	PF02768	DNA polymerase III beta subunit, C-terminal domain
smi_0003	PF06107	smi_0003
smi_0004	PF01926	50S ribosome-binding GTPase
smi_0004	PF06071	Protein of unknown function (DUF933)
smi_0005	PF01195	Peptidyl-tRNA hydrolase
smi_0006	PF00270	DEAD/DEAH box helicase
smi_0006	PF00271	Helicase conserved C-terminal domain
smi_0006	PF02559	CarD-like/TRCF domain
smi_0006	PF03461	TRCF domain
smi_0007	PF01479	S4 domain
smi_0008	PF04977	Septum formation initiator
smi_0009	PF13354	Beta-lactamase enzyme family
smi_0010	PF01171	PP-loop family
smi_0010	PF11734	TilS substrate C-terminal domain
smi_0011	PF00156	Phosphoribosyl transferase domain
smi_0012	PF00004	ATPase family associated with various cellular activities (AAA)
smi_0012	PF01434	Peptidase family M41
smi_0012	PF06480	FtsH Extracellular
smi_0014	PF13936	Helix-turn-helix domain
smi_0022	PF00709	Adenylosuccinate synthetase
smi_0024	PF14437	smi_0024
smi_0026	PF00692	dUTPase
smi_0027	PF00300	Histidine phosphatase superfamily (branch 1)
smi_0028	PF13481	AAA domain
smi_0028	PF13541	Subunit ChlI of Mg-chelatase
smi_0029	PF01987	Mitochondrial biogenesis AIM24
smi_0030	PF00484	Carbonic anhydrase
smi_0031	PF13367	smi_0031
smi_0032	PF13936	Helix-turn-helix domain
smi_0033	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
smi_0033	PF14572	Phosphoribosyl synthetase-associated domain
smi_0034	PF12784	smi_0034
smi_0037	PF01473	Putative cell wall binding repeat
smi_0038	PF01473	Putative cell wall binding repeat
smi_0039	PF05717	smi_0039
smi_0040	PF03050	smi_0040
smi_0040	PF13005	smi_0040
smi_0041	PF03050	smi_0041
smi_0041	PF13817	smi_0041
smi_0042	PF13936	Helix-turn-helix domain
smi_0043	PF13304	AAA domain
smi_0044	PF13707	smi_0044
smi_0045	PF13384	Homeodomain-like domain
smi_0045	PF13592	smi_0045
smi_0046	PF13358	DDE superfamily endonuclease
smi_0047	PF12784	smi_0047
smi_0048	PF00476	DNA polymerase family A
smi_0048	PF01367	5'-3' exonuclease, C-terminal SAM fold
smi_0048	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
smi_0049	PF13380	CoA binding domain
smi_0050	PF03601	smi_0050
smi_0051	PF00155	Aminotransferase class I and II
smi_0052	PF02565	Recombination protein O C terminal
smi_0052	PF11967	Recombination protein O N terminal
smi_0053	PF02504	Fatty acid synthesis protein
smi_0054	PF00550	Phosphopantetheine attachment site
smi_0055	PF01473	Putative cell wall binding repeat
smi_0056	PF01381	Helix-turn-helix
smi_0057	PF01473	Putative cell wall binding repeat
smi_0057.1	PF03047	smi_0057.1
smi_0058	PF14501	GHKL domain
smi_0059	PF00072	Response regulator receiver domain
smi_0059	PF04397	LytTr DNA-binding domain
smi_0059.1	PF10439	smi_0059.1
smi_0064	PF00005	ABC transporter
smi_0064	PF00664	ABC transporter transmembrane region
smi_0064	PF03412	Peptidase C39 family
smi_0065	PF13437	HlyD family secretion protein
smi_0066	PF01259	SAICAR synthetase
smi_0067	PF02769	AIR synthase related protein, C-terminal domain
smi_0067	PF13507	CobB/CobQ-like glutamine amidotransferase domain
smi_0068	PF00156	Phosphoribosyl transferase domain
smi_0068	PF13522	Glutamine amidotransferase domain
smi_0069	PF00586	AIR synthase related protein, N-terminal domain
smi_0069	PF02769	AIR synthase related protein, C-terminal domain
smi_0070	PF00551	Formyl transferase
smi_0071	PF00583	Acetyltransferase (GNAT) family
smi_0072	PF01808	AICARFT/IMPCHase bienzyme
smi_0072	PF02142	MGS-like domain
smi_0073	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
smi_0073	PF02843	Phosphoribosylglycinamide synthetase, C domain
smi_0073	PF02844	Phosphoribosylglycinamide synthetase, N domain
smi_0074	PF00731	AIR carboxylase
smi_0075	PF02222	ATP-grasp domain
smi_0076	PF00206	Lyase
smi_0076	PF10397	Adenylosuccinate lyase C-terminus
smi_0077	PF01610	smi_0077
smi_0077	PF13542	smi_0077
smi_0077	PF14690	smi_0077
smi_0078	PF00392	Bacterial regulatory proteins, gntR family
smi_0078	PF07702	UTRA domain
smi_0079	PF01301	Glycosyl hydrolases family 35
smi_0080	PF03830	PTS system sorbose subfamily IIB component
smi_0081	PF03609	smi_0081
smi_0082	PF03613	smi_0082
smi_0083	PF03610	PTS system fructose IIA component
smi_0084	PF01380	SIS domain
smi_0086	PF00188	Cysteine-rich secretory protein family
smi_0086	PF01473	Putative cell wall binding repeat
smi_0087	PF01048	Phosphorylase superfamily
smi_0088	PF02386	Cation transport protein
smi_0089	PF02254	TrkA-N domain
smi_0090	PF00535	Glycosyl transferase family 2
smi_0091	PF04650	smi_0091
smi_0091	PF11966	smi_0091
smi_0092	PF00072	Response regulator receiver domain
smi_0092	PF00486	Transcriptional regulatory protein, C terminal
smi_0093	PF00512	His Kinase A (phospho-acceptor) domain
smi_0093	PF00672	HAMP domain
smi_0093	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0094	PF00163	Ribosomal protein S4/S9 N-terminal domain
smi_0094	PF01479	S4 domain
smi_0097	PF14206	smi_0097
smi_0098	PF14206	smi_0098
smi_0099	PF04221	RelB antitoxin
smi_0100	PF05016	Plasmid stabilisation system protein
smi_0102	PF05816	smi_0102
smi_0103	PF01022	Bacterial regulatory protein, arsR family
smi_0104	PF03596	smi_0104
smi_0105	PF00471	Ribosomal protein L33
smi_0106	PF01783	Ribosomal L32p protein family
smi_0107	PF13936	Helix-turn-helix domain
smi_0108	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
smi_0108	PF00874	PRD domain
smi_0108	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_0109	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_0110	PF03611	smi_0110
smi_0111	PF00456	Transketolase, thiamine diphosphate binding domain
smi_0112	PF02779	Transketolase, pyrimidine binding domain
smi_0112	PF02780	Transketolase, C-terminal domain
smi_0113	PF00920	Dehydratase family
smi_0114	PF01883	Domain of unknown function DUF59
smi_0116	PF12844	Helix-turn-helix domain
smi_0118	PF03129	Anticodon binding domain
smi_0118	PF13393	Histidyl-tRNA synthetase
smi_0120	PF01381	Helix-turn-helix
smi_0122	PF11368	smi_0122
smi_0123	PF00005	ABC transporter
smi_0124	PF12698	ABC-2 family transporter protein
smi_0125	PF02517	CAAX protease self-immunity
smi_0127	PF00152	tRNA synthetases class II (D, K and N)
smi_0127	PF01336	OB-fold nucleic acid binding domain
smi_0127	PF02938	GAD domain
smi_0128	PF02588	smi_0128
smi_0128	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
smi_0129	PF00356	Bacterial regulatory proteins, lacI family
smi_0129	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
smi_0130	PF06691	smi_0130
smi_0131	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0132	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0133	PF13416	Bacterial extracellular solute-binding protein
smi_0134	PF02446	4-alpha-glucanotransferase
smi_0135	PF00343	Carbohydrate phosphorylase
smi_0136	PF13847	Methyltransferase domain
smi_0138	PF00122	E1-E2 ATPase
smi_0138	PF00702	haloacid dehalogenase-like hydrolase
smi_0139	PF00579	tRNA synthetases class I (W and Y)
smi_0139	PF01479	S4 domain
smi_0140	PF13936	Helix-turn-helix domain
smi_0142	PF00892	EamA-like transporter family
smi_0143	PF00132	Bacterial transferase hexapeptide (six repeats)
smi_0143	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
smi_0143	PF14602	Hexapeptide repeat of succinyl-transferase
smi_0144	PF01546	Peptidase family M20/M25/M40
smi_0144	PF07687	Peptidase dimerisation domain
smi_0145	PF01812	5-formyltetrahydrofolate cyclo-ligase family
smi_0146	PF01694	Rhomboid family
smi_0147	PF00483	Nucleotidyl transferase
smi_0148	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
smi_0148	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
smi_0150	PF00750	tRNA synthetases class I (R)
smi_0150	PF03485	Arginyl tRNA synthetase N terminal domain
smi_0150	PF05746	DALR anticodon binding domain
smi_0151	PF01316	Arginine repressor, DNA binding domain
smi_0151	PF02863	Arginine repressor, C-terminal domain
smi_0152	PF00488	MutS domain V
smi_0152	PF01624	MutS domain I
smi_0152	PF05188	MutS domain II
smi_0152	PF05190	MutS family domain IV
smi_0152	PF05192	MutS domain III
smi_0153	PF00005	ABC transporter
smi_0153	PF00664	ABC transporter transmembrane region
smi_0154	PF00005	ABC transporter
smi_0154	PF00664	ABC transporter transmembrane region
smi_0155	PF07722	Peptidase C26
smi_0156	PF01797	Transposase IS200 like
smi_0157	PF00342	Phosphoglucose isomerase
smi_0158	PF00749	tRNA synthetases class I (E and Q), catalytic domain
smi_0159	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
smi_0177	PF00149	Calcineurin-like phosphoesterase
smi_0178	PF01402	Ribbon-helix-helix protein, copG family
smi_0179	PF13328	HD domain
smi_0180	PF00589	Phage integrase family
smi_0180	PF14657	smi_0180
smi_0181	PF11372	smi_0181
smi_0183	PF00149	Calcineurin-like phosphoesterase
smi_0186	PF01580	FtsK/SpoIIIE family
smi_0188	PF03372	Endonuclease/Exonuclease/phosphatase family
smi_0193	PF00291	Pyridoxal-phosphate dependent enzyme
smi_0193	PF14821	Threonine synthase N terminus
smi_0194	PF01554	MatE
smi_0195	PF13419	Haloacid dehalogenase-like hydrolase
smi_0196	PF01476	LysM domain
smi_0197	PF01470	Pyroglutamyl peptidase
smi_0198	PF06161	smi_0198
smi_0199	PF01702	Queuine tRNA-ribosyltransferase
smi_0200	PF01757	smi_0200
smi_0201	PF13936	Helix-turn-helix domain
smi_0202	PF01979	Amidohydrolase family
smi_0203	PF00107	Zinc-binding dehydrogenase
smi_0203	PF08240	Alcohol dehydrogenase GroES-like domain
smi_0204	PF06279	smi_0204
smi_0205	PF00437	Type II/IV secretion system protein
smi_0206	PF00482	Type II secretion system (T2SS), protein F
smi_0207	PF13544	smi_0207
smi_0209	PF11773	smi_0209
smi_0210	PF15980	smi_0210
smi_0212	PF13649	Methyltransferase domain
smi_0213	PF02384	N-6 DNA Methylase
smi_0214	PF00871	Acetokinase family
smi_0215	PF00825	Ribonuclease P
smi_0216	PF02096	60Kd inner membrane protein
smi_0217	PF01424	R3H domain
smi_0217	PF13083	KH domain
smi_0217	PF14804	Jag N-terminus
smi_0219	PF03611	smi_0219
smi_0220	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_0221	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
smi_0222	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
smi_0223	PF01261	Xylose isomerase-like TIM barrel
smi_0224	PF00596	Class II Aldolase and Adducin N-terminal domain
smi_0225	PF00874	PRD domain
smi_0225	PF08279	HTH domain
smi_0226	PF13483	Beta-lactamase superfamily domain
smi_0227	PF00456	Transketolase, thiamine diphosphate binding domain
smi_0227	PF02779	Transketolase, pyrimidine binding domain
smi_0227	PF02780	Transketolase, C-terminal domain
smi_0228	PF02699	Preprotein translocase subunit
smi_0229	PF01451	Low molecular weight phosphotyrosine protein phosphatase
smi_0230	PF02493	MORN repeat
smi_0231	PF00171	Aldehyde dehydrogenase family
smi_0231	PF00465	Iron-containing alcohol dehydrogenase
smi_0232	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
smi_0232	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
smi_0233	PF00849	RNA pseudouridylate synthase
smi_0234	PF00905	Penicillin binding protein transpeptidase domain
smi_0234	PF00912	Transglycosylase
smi_0235	PF13936	Helix-turn-helix domain
smi_0236	PF00471	Ribosomal protein L33
smi_0237	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
smi_0238	PF00467	KOW motif
smi_0238	PF02357	Transcription termination factor nusG
smi_0240	PF13936	Helix-turn-helix domain
smi_0256	PF00005	ABC transporter
smi_0257	PF01061	smi_0257
smi_0258	PF07730	Histidine kinase
smi_0259	PF00072	Response regulator receiver domain
smi_0259	PF00196	Bacterial regulatory proteins, luxR family
smi_0260	PF13936	Helix-turn-helix domain
smi_0261	PF00164	Ribosomal protein S12/S23
smi_0262	PF00177	Ribosomal protein S7p/S5e
smi_0263	PF00009	Elongation factor Tu GTP binding domain
smi_0263	PF00679	Elongation factor G C-terminus
smi_0263	PF03144	Elongation factor Tu domain 2
smi_0263	PF03764	Elongation factor G, domain IV
smi_0263	PF14492	Elongation Factor G, domain II
smi_0264	PF00929	Exonuclease
smi_0264	PF02811	PHP domain
smi_0264	PF07733	Bacterial DNA polymerase III alpha subunit
smi_0264	PF11490	smi_0264
smi_0264	PF14480	smi_0264
smi_0265	PF15738	smi_0265
smi_0266	PF02073	Thermophilic metalloprotease (M29)
smi_0267	PF00849	RNA pseudouridylate synthase
smi_0267	PF01479	S4 domain
smi_0268	PF03051	Peptidase C1-like family
smi_0269	PF01610	smi_0269
smi_0269	PF14690	smi_0269
smi_0271	PF13306	Leucine rich repeats (6 copies)
smi_0272	PF03613	smi_0272
smi_0273	PF03609	smi_0273
smi_0274	PF03610	PTS system fructose IIA component
smi_0274	PF03830	PTS system sorbose subfamily IIB component
smi_0275	PF00107	Zinc-binding dehydrogenase
smi_0275	PF08240	Alcohol dehydrogenase GroES-like domain
smi_0276	PF08282	haloacid dehalogenase-like hydrolase
smi_0277	PF00860	Permease family
smi_0278	PF02517	CAAX protease self-immunity
smi_0279	PF00809	Pterin binding enzyme
smi_0280	PF02875	Mur ligase family, glutamate ligase domain
smi_0280	PF08245	Mur ligase middle domain
smi_0281	PF01227	GTP cyclohydrolase I
smi_0282	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
smi_0282	PF02152	Dihydroneopterin aldolase
smi_0283	PF06124	Staphylococcal protein of unknown function (DUF960)
smi_0284	PF00356	Bacterial regulatory proteins, lacI family
smi_0284	PF13377	Periplasmic binding protein-like domain
smi_0285	PF00710	Asparaginase
smi_0286	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
smi_0286	PF08282	haloacid dehalogenase-like hydrolase
smi_0287	PF00582	Universal stress protein family
smi_0289	PF00155	Aminotransferase class I and II
smi_0290	PF00468	Ribosomal protein L34
smi_0291	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_0292	PF13520	Amino acid permease
smi_0293	PF01026	TatD related DNase
smi_0294	PF01751	Toprim domain
smi_0294	PF13331	smi_0294
smi_0295	PF00398	Ribosomal RNA adenine dimethylase
smi_0296	PF03193	Protein of unknown function, DUF258
smi_0296	PF16745	smi_0296
smi_0297	PF00834	Ribulose-phosphate 3 epimerase family
smi_0298	PF04263	Thiamin pyrophosphokinase, catalytic domain
smi_0298	PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain
smi_0299	PF02646	smi_0299
smi_0300	PF01966	HD domain
smi_0301	PF13936	Helix-turn-helix domain
smi_0302	PF00156	Phosphoribosyl transferase domain
smi_0302	PF09182	Bacterial purine repressor, N-terminal
smi_0303	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
smi_0303	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
smi_0304	PF04055	Radical SAM superfamily
smi_0304	PF13353	4Fe-4S single cluster domain
smi_0305	PF00005	ABC transporter
smi_0308	PF00072	Response regulator receiver domain
smi_0308	PF00486	Transcriptional regulatory protein, C terminal
smi_0309	PF00512	His Kinase A (phospho-acceptor) domain
smi_0309	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0310	PF02096	60Kd inner membrane protein
smi_0311	PF00588	SpoU rRNA Methylase family
smi_0311	PF08032	RNA 2'-O ribose methyltransferase substrate binding
smi_0312	PF01027	Inhibitor of apoptosis-promoting Bax1
smi_0313	PF03590	Aspartate-ammonia ligase
smi_0314	PF03602	Conserved hypothetical protein 95
smi_0315	PF01467	Cytidylyltransferase
smi_0316	PF05362	Lon protease (S16) C-terminal proteolytic domain
smi_0316	PF13180	PDZ domain
smi_0317	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
smi_0318	PF11772	smi_0318
smi_0319	PF01223	DNA/RNA non-specific endonuclease
smi_0320	PF00571	CBS domain
smi_0320	PF01595	smi_0320
smi_0320	PF03471	Transporter associated domain
smi_0322	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_0323	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0324	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0324	PF12911	smi_0324
smi_0325	PF00005	ABC transporter
smi_0325	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
smi_0326	PF00005	ABC transporter
smi_0326	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
smi_0327	PF04392	ABC transporter substrate binding protein
smi_0328	PF02653	smi_0328
smi_0329	PF00005	ABC transporter
smi_0331	PF03672	smi_0331
smi_0332	PF01177	Asp/Glu/Hydantoin racemase
smi_0333	PF01725	Ham1 family
smi_0334	PF12850	Calcineurin-like phosphoesterase superfamily domain
smi_0335	PF00571	CBS domain
smi_0336	PF00589	Phage integrase family
smi_0336	PF02899	Phage integrase, N-terminal SAM-like domain
smi_0337	PF02616	ScpA/B protein
smi_0338	PF04079	Putative transcriptional regulators (Ypuh-like)
smi_0339	PF00849	RNA pseudouridylate synthase
smi_0339	PF01479	S4 domain
smi_0340	PF01809	smi_0340
smi_0341	PF01370	NAD dependent epimerase/dehydratase family
smi_0342	PF05343	M42 glutamyl aminopeptidase
smi_0344	PF01895	PhoU domain
smi_0344	PF02690	smi_0344
smi_0345	PF03644	Glycosyl hydrolase family 85
smi_0345	PF04650	smi_0345
smi_0345	PF07501	G5 domain
smi_0345	PF07523	Bacterial Ig-like domain (group 3)
smi_0346	PF00162	Phosphoglycerate kinase
smi_0347	PF06081	smi_0347
smi_0348	PF13411	MerR HTH family regulatory protein
smi_0349	PF00120	Glutamine synthetase, catalytic domain
smi_0349	PF03951	Glutamine synthetase, beta-Grasp domain
smi_0350	PF03551	Transcriptional regulator PadR-like family
smi_0351	PF11193	smi_0351
smi_0352	PF11193	smi_0352
smi_0353	PF01628	HrcA protein C terminal domain
smi_0353	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
smi_0354	PF01025	GrpE
smi_0355	PF00012	Hsp70 protein
smi_0356	PF01965	DJ-1/PfpI family
smi_0357	PF00226	DnaJ domain
smi_0357	PF00684	DnaJ central domain
smi_0357	PF01556	DnaJ C terminal domain
smi_0358	PF01609	Transposase DDE domain
smi_0358	PF05598	smi_0358
smi_0360	PF01230	HIT domain
smi_0361	PF00005	ABC transporter
smi_0362	PF05975	smi_0362
smi_0364	PF04397	LytTr DNA-binding domain
smi_0365	PF00072	Response regulator receiver domain
smi_0365	PF04397	LytTr DNA-binding domain
smi_0366	PF14501	GHKL domain
smi_0372	PF02517	CAAX protease self-immunity
smi_0373	PF01636	Phosphotransferase enzyme family
smi_0374	PF02390	Putative methyltransferase
smi_0375	PF02576	Uncharacterised BCR, YhbC family COG0779
smi_0376	PF08529	NusA N-terminal domain
smi_0376	PF13184	NusA-like KH domain
smi_0377	PF04296	Protein of unknown function (DUF448)
smi_0378	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
smi_0379	PF00009	Elongation factor Tu GTP binding domain
smi_0379	PF04760	Translation initiation factor IF-2, N-terminal region
smi_0379	PF11987	Translation-initiation factor 2
smi_0380	PF02033	Ribosome-binding factor A
smi_0382	PF08984	Domain of unknown function (DUF1858)
smi_0383	PF01814	Hemerythrin HHE cation binding domain
smi_0383	PF04282	smi_0383
smi_0383	PF13596	PAS domain
smi_0384	PF08930	Domain of unknown function (DUF1912)
smi_0386	PF01613	Flavin reductase like domain
smi_0387	PF13302	Acetyltransferase (GNAT) domain
smi_0388	PF13238	AAA domain
smi_0389	PF00133	tRNA synthetases class I (I, L, M and V)
smi_0389	PF08264	Anticodon-binding domain of tRNA
smi_0389	PF10458	Valyl tRNA synthetase tRNA binding arm
smi_0390	PF00145	C-5 cytosine-specific DNA methylase
smi_0391	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0391	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0393	PF02661	Fic/DOC family
smi_0394	PF00271	Helicase conserved C-terminal domain
smi_0394	PF04851	Type III restriction enzyme, res subunit
smi_0396	PF00440	Bacterial regulatory proteins, tetR family
smi_0396	PF13305	WHG domain
smi_0397	PF00005	ABC transporter
smi_0398	PF02687	smi_0398
smi_0399	PF13936	Helix-turn-helix domain
smi_0400	PF05066	HB1, ASXL, restriction endonuclease HTH domain
smi_0401	PF00117	Glutamine amidotransferase class-I
smi_0401	PF06418	CTP synthase N-terminus
smi_0402	PF01473	Putative cell wall binding repeat
smi_0403	PF15513	Domain of unknown function (DUF4651)
smi_0404	PF00085	Thioredoxin
smi_0405	PF01588	Putative tRNA binding domain
smi_0405	PF14794	Domain of unknown function (DUF4479)
smi_0406	PF00106	short chain dehydrogenase
smi_0407	PF00239	Resolvase, N terminal domain
smi_0407	PF07508	Recombinase
smi_0407	PF13408	Recombinase zinc beta ribbon domain
smi_0408	PF13783	smi_0408
smi_0409	PF00717	Peptidase S24-like
smi_0409	PF12844	Helix-turn-helix domain
smi_0420	PF05565	smi_0420
smi_0421	PF13479	smi_0421
smi_0422	PF00271	Helicase conserved C-terminal domain
smi_0422	PF04851	Type III restriction enzyme, res subunit
smi_0423	PF05037	smi_0423
smi_0424	PF08708	Primase C terminal 1 (PriCT-1)
smi_0424	PF09250	Bifunctional DNA primase/polymerase, N-terminal
smi_0425	PF01057	Parvovirus non-structural protein NS1
smi_0425	PF03288	Poxvirus D5 protein-like
smi_0426	PF08774	VRR-NUC domain
smi_0429	PF07852	smi_0429
smi_0433	PF07116	smi_0433
smi_0437	PF11753	smi_0437
smi_0438	PF02452	PemK-like protein
smi_0442	PF03592	Terminase small subunit
smi_0443	PF04466	Phage terminase large subunit
smi_0444	PF05133	Phage portal protein, SPP1 Gp6-like
smi_0445	PF03496	ADP-ribosyltransferase exoenzyme
smi_0445	PF04233	smi_0445
smi_0451	PF06810	smi_0451
smi_0456	PF04883	smi_0456
smi_0459	PF04984	Phage tail sheath protein
smi_0460	PF09393	Protein of unknown function (DUF2001)
smi_0461	PF08890	Phage XkdN-like protein
smi_0463	PF01476	LysM domain
smi_0465	PF10844	smi_0465
smi_0466	PF10934	smi_0466
smi_0467	PF04865	smi_0467
smi_0468	PF10076	smi_0468
smi_0477	PF09682	smi_0477
smi_0478	PF01473	Putative cell wall binding repeat
smi_0479	PF01609	Transposase DDE domain
smi_0479	PF05598	smi_0479
smi_0480	PF00436	Single-strand binding protein family
smi_0481	PF00166	Chaperonin 10 Kd subunit
smi_0482	PF00118	TCP-1/cpn60 chaperonin family
smi_0483	PF02677	smi_0483
smi_0484	PF08241	Methyltransferase domain
smi_0485	PF01381	Helix-turn-helix
smi_0486	PF04167	Protein of unknown function (DUF402)
smi_0487	PF02631	RecX family
smi_0488	PF01938	TRAM domain
smi_0488	PF05958	tRNA (Uracil-5-)-methyltransferase
smi_0511	PF02237	Biotin protein ligase C terminal domain
smi_0511	PF03099	Biotin/lipoate A/B protein ligase family
smi_0511	PF08279	HTH domain
smi_0512	PF13936	Helix-turn-helix domain
smi_0513	PF04932	smi_0513
smi_0514	PF01047	MarR family
smi_0515	PF00005	ABC transporter
smi_0516	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0516	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
smi_0517	PF00440	Bacterial regulatory proteins, tetR family
smi_0517	PF14278	smi_0517
smi_0518	PF01545	Cation efflux family
smi_0519	PF00356	Bacterial regulatory proteins, lacI family
smi_0519	PF13377	Periplasmic binding protein-like domain
smi_0520	PF00288	GHMP kinases N terminal domain
smi_0520	PF08544	GHMP kinases C terminal
smi_0520	PF10509	Galactokinase galactose-binding signature
smi_0521	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
smi_0521	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
smi_0522	PF03061	Thioesterase superfamily
smi_0523	PF02086	D12 class N6 adenine-specific DNA methyltransferase
smi_0524	PF01555	DNA methylase
smi_0526	PF04556	smi_0526
smi_0527	PF00860	Permease family
smi_0528	PF00156	Phosphoribosyl transferase domain
smi_0529	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
smi_0530	PF03372	Endonuclease/Exonuclease/phosphatase family
smi_0531	PF02517	CAAX protease self-immunity
smi_0532	PF12840	Helix-turn-helix domain
smi_0533	PF07853	smi_0533
smi_0533	PF13630	smi_0533
smi_0534	PF11694	smi_0534
smi_0535	PF04239	Protein of unknown function (DUF421)
smi_0536	PF00005	ABC transporter
smi_0536	PF00664	ABC transporter transmembrane region
smi_0537	PF00005	ABC transporter
smi_0537	PF00664	ABC transporter transmembrane region
smi_0538	PF02397	smi_0538
smi_0539	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
smi_0541	PF00425	chorismate binding enzyme
smi_0541	PF04715	Anthranilate synthase component I, N terminal region
smi_0542	PF00117	Glutamine amidotransferase class-I
smi_0543	PF00591	Glycosyl transferase family, a/b domain
smi_0543	PF02885	Glycosyl transferase family, helical bundle domain
smi_0544	PF00218	Indole-3-glycerol phosphate synthase
smi_0545	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
smi_0546	PF00291	Pyridoxal-phosphate dependent enzyme
smi_0547	PF00290	Tryptophan synthase alpha chain
smi_0548	PF06750	smi_0548
smi_0549	PF00583	Acetyltransferase (GNAT) family
smi_0550	PF05532	CsbD-like
smi_0551	PF03780	smi_0551
smi_0552	PF10031	smi_0552
smi_0554	PF04226	smi_0554
smi_0555	PF05043	Mga helix-turn-helix domain
smi_0555	PF08270	smi_0555
smi_0555	PF08280	M protein trans-acting positive regulator (MGA) HTH domain
smi_0557	PF08240	Alcohol dehydrogenase GroES-like domain
smi_0557	PF13602	Zinc-binding dehydrogenase
smi_0558	PF02082	Transcriptional regulator
smi_0560	PF00004	ATPase family associated with various cellular activities (AAA)
smi_0560	PF12002	MgsA AAA+ ATPase C terminal
smi_0560	PF16193	smi_0560
smi_0561	PF11217	Protein of unknown function (DUF3013)
smi_0562	PF00293	NUDIX domain
smi_0563	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
smi_0564	PF04452	RNA methyltransferase
smi_0565	PF01432	Peptidase family M3
smi_0565	PF08439	Oligopeptidase F
smi_0566	PF10978	smi_0566
smi_0567	PF13561	Enoyl-(Acyl carrier protein) reductase
smi_0568	PF00230	Major intrinsic protein
smi_0569	PF14489	QueF-like protein
smi_0570	PF04055	Radical SAM superfamily
smi_0570	PF13394	4Fe-4S single cluster domain
smi_0571	PF01242	6-pyruvoyl tetrahydropterin synthase
smi_0572	PF06508	Queuosine biosynthesis protein QueC
smi_0573	PF00085	Thioredoxin
smi_0574	PF15507	Domain of unknown function (DUF4649)
smi_0575	PF01047	MarR family
smi_0576	PF03788	smi_0576
smi_0577	PF04172	smi_0577
smi_0578	PF00005	ABC transporter
smi_0578	PF00664	ABC transporter transmembrane region
smi_0580	PF00005	ABC transporter
smi_0581	PF00392	Bacterial regulatory proteins, gntR family
smi_0582	PF03477	ATP cone domain
smi_0583	PF07261	Replication initiation and membrane attachment
smi_0584	PF01695	IstB-like ATP binding protein
smi_0584	PF07319	Primosomal protein DnaI N-terminus
smi_0585	PF00881	Nitroreductase family
smi_0586	PF01926	50S ribosome-binding GTPase
smi_0586	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
smi_0589	PF01043	SecA preprotein cross-linking domain
smi_0589	PF02810	SEC-C motif
smi_0589	PF07516	SecA Wing and Scaffold domain
smi_0589	PF07517	SecA DEAD-like domain
smi_0590	PF00793	DAHP synthetase I family
smi_0591	PF00793	DAHP synthetase I family
smi_0592	PF01648	4'-phosphopantetheinyl transferase superfamily
smi_0593	PF00842	Alanine racemase, C-terminal domain
smi_0593	PF01168	Alanine racemase, N-terminal domain
smi_0594	PF00270	DEAD/DEAH box helicase
smi_0594	PF00271	Helicase conserved C-terminal domain
smi_0594	PF17191	smi_0594
smi_0596	PF02371	smi_0596
smi_0597	PF01548	smi_0597
smi_0598	PF12784	smi_0598
smi_0599	PF13302	Acetyltransferase (GNAT) domain
smi_0600	PF05448	Acetyl xylan esterase (AXE1)
smi_0601	PF02973	Sialidase, N-terminal domain
smi_0601	PF13088	BNR repeat-like domain
smi_0601	PF13365	Trypsin-like peptidase domain
smi_0602	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
smi_0603	PF01547	Bacterial extracellular solute-binding protein
smi_0604	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0605	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0606	PF04074	Domain of unknown function (DUF386)
smi_0607	PF04854	smi_0607
smi_0608	PF00701	Dihydrodipicolinate synthetase family
smi_0609	PF00480	ROK family
smi_0611	PF05016	Plasmid stabilisation system protein
smi_0612	PF01380	SIS domain
smi_0612	PF01418	Helix-turn-helix domain, rpiR family
smi_0613	PF00905	Penicillin binding protein transpeptidase domain
smi_0613	PF03717	Penicillin-binding Protein dimerisation domain
smi_0614	PF02132	RecR protein
smi_0614	PF13662	Toprim domain
smi_0615	PF01820	D-ala D-ala ligase N-terminus
smi_0615	PF07478	D-ala D-ala ligase C-terminus
smi_0616	PF01225	Mur ligase family, catalytic domain
smi_0616	PF02875	Mur ligase family, glutamate ligase domain
smi_0616	PF08245	Mur ligase middle domain
smi_0617	PF09529	smi_0617
smi_0618	PF13936	Helix-turn-helix domain
smi_0619	PF13936	Helix-turn-helix domain
smi_0620	PF02491	SHS2 domain inserted in FTSA
smi_0620	PF11983	smi_0620
smi_0620	PF14450	Cell division protein FtsA
smi_0621	PF00091	Tubulin/FtsZ family, GTPase domain
smi_0621	PF12327	FtsZ family, C-terminal domain
smi_0622	PF01168	Alanine racemase, N-terminal domain
smi_0623	PF04472	Protein of unknown function (DUF552)
smi_0624	PF02325	smi_0624
smi_0625	PF01479	S4 domain
smi_0626	PF05103	DivIVA protein
smi_0627	PF00133	tRNA synthetases class I (I, L, M and V)
smi_0627	PF06827	Zinc finger found in FPG and IleRS
smi_0627	PF08264	Anticodon-binding domain of tRNA
smi_0629	PF00300	Histidine phosphatase superfamily (branch 1)
smi_0630	PF14498	Glycosyl hydrolase family 65, N-terminal domain
smi_0631	PF00005	ABC transporter
smi_0632	PF02687	smi_0632
smi_0632	PF12704	MacB-like periplasmic core domain
smi_0633	PF08534	Redoxin
smi_0634	PF01297	Periplasmic solute binding protein family
smi_0635	PF00950	smi_0635
smi_0636	PF00005	ABC transporter
smi_0637	PF05977	Transmembrane secretion effector
smi_0638	PF00899	ThiF family
smi_0639	PF01431	Peptidase family M13
smi_0639	PF05649	Peptidase family M13
smi_0640	PF00753	Metallo-beta-lactamase superfamily
smi_0642	PF02824	TGS domain
smi_0642	PF04607	Region found in RelA / SpoT proteins
smi_0642	PF13291	ACT domain
smi_0642	PF13328	HD domain
smi_0643	PF02580	D-Tyr-tRNA(Tyr) deacylase
smi_0645	PF01325	Iron dependent repressor, N-terminal DNA binding domain
smi_0645	PF02742	Iron dependent repressor, metal binding and dimerisation domain
smi_0646	PF12850	Calcineurin-like phosphoesterase superfamily domain
smi_0647	PF02082	Transcriptional regulator
smi_0648	PF11187	Protein of unknown function (DUF2974)
smi_0649	PF00072	Response regulator receiver domain
smi_0649	PF00486	Transcriptional regulatory protein, C terminal
smi_0650	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0651	PF00005	ABC transporter
smi_0651	PF00664	ABC transporter transmembrane region
smi_0652	PF04087	smi_0652
smi_0653	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
smi_0653	PF02824	TGS domain
smi_0653	PF03129	Anticodon binding domain
smi_0653	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
smi_0656	PF00312	Ribosomal protein S15
smi_0657	PF01032	FecCD transport family
smi_0658	PF00005	ABC transporter
smi_0659	PF01497	Periplasmic binding protein
smi_0660	PF00756	Putative esterase
smi_0661	PF01553	Acyltransferase
smi_0662	PF13936	Helix-turn-helix domain
smi_0663	PF00122	E1-E2 ATPase
smi_0663	PF00702	haloacid dehalogenase-like hydrolase
smi_0664	PF04816	Family of unknown function (DUF633)
smi_0665	PF01784	NIF3 (NGG1p interacting factor 3)
smi_0666	PF01266	FAD dependent oxidoreductase
smi_0667	PF01266	FAD dependent oxidoreductase
smi_0668	PF16363	smi_0668
smi_0669	PF00535	Glycosyl transferase family 2
smi_0670	PF13370	4Fe-4S single cluster domain
smi_0672	PF02224	Cytidylate kinase
smi_0673	PF03831	PhnA protein
smi_0673	PF08274	PhnA Zinc-Ribbon
smi_0675	PF07690	Major Facilitator Superfamily
smi_0676	PF01416	tRNA pseudouridine synthase
smi_0677	PF08543	Phosphomethylpyrimidine kinase
smi_0678	PF07155	ECF-type riboflavin transporter, S component
smi_0679	PF00557	Metallopeptidase family M24
smi_0679	PF01321	Creatinase/Prolidase N-terminal domain
smi_0680	PF07685	CobB/CobQ-like glutamine amidotransferase domain
smi_0681	PF08245	Mur ligase middle domain
smi_0681	PF08353	smi_0681
smi_0682	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
smi_0682	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_0683	PF00909	Ammonium Transporter Family
smi_0684	PF00543	Nitrogen regulatory protein P-II
smi_0685	PF00270	DEAD/DEAH box helicase
smi_0685	PF00271	Helicase conserved C-terminal domain
smi_0686	PF13936	Helix-turn-helix domain
smi_0687	PF06018	CodY GAF-like domain
smi_0687	PF08222	CodY helix-turn-helix domain
smi_0688	PF00857	Isochorismatase family
smi_0690	PF02687	smi_0690
smi_0691	PF00005	ABC transporter
smi_0692	PF02687	smi_0692
smi_0693	PF00072	Response regulator receiver domain
smi_0693	PF00486	Transcriptional regulatory protein, C terminal
smi_0694	PF00512	His Kinase A (phospho-acceptor) domain
smi_0694	PF00672	HAMP domain
smi_0694	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0695	PF01116	Fructose-bisphosphate aldolase class-II
smi_0697	PF04221	RelB antitoxin
smi_0698	PF05016	Plasmid stabilisation system protein
smi_0699	PF12697	Alpha/beta hydrolase family
smi_0700	PF00300	Histidine phosphatase superfamily (branch 1)
smi_0701	PF00005	ABC transporter
smi_0702	PF06182	smi_0702
smi_0703	PF06182	smi_0703
smi_0705	PF00082	Subtilase family
smi_0705	PF02225	PA domain
smi_0705	PF06280	Fn3-like domain (DUF1034)
smi_0707	PF11877	smi_0707
smi_0708	PF04055	Radical SAM superfamily
smi_0708	PF16199	smi_0708
smi_0709	PF06962	Putative rRNA methylase
smi_0711	PF00999	Sodium/hydrogen exchanger family
smi_0712	PF03631	smi_0712
smi_0713	PF02547	Queuosine biosynthesis protein
smi_0714	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
smi_0715	PF01165	Ribosomal protein S21
smi_0716	PF02603	HPr Serine kinase N terminus
smi_0716	PF07475	HPr Serine kinase C-terminal domain
smi_0717	PF01790	smi_0717
smi_0718	PF06103	smi_0718
smi_0719	PF12732	smi_0719
smi_0720	PF04055	Radical SAM superfamily
smi_0720	PF06969	HemN C-terminal domain
smi_0721	PF01643	Acyl-ACP thioesterase
smi_0722	PF13242	HAD-hyrolase-like
smi_0722	PF13344	Haloacid dehalogenase-like hydrolase
smi_0723	PF07314	smi_0723
smi_0724	PF12844	Helix-turn-helix domain
smi_0728	PF03960	ArsC family
smi_0729	PF05256	Uncharacterised protein family (UPF0223)
smi_0730	PF00459	Inositol monophosphatase family
smi_0731	PF01189	NOL1/NOP2/sun family
smi_0731	PF13636	pre-rRNA processing and ribosome biogenesis
smi_0731	PF17125	smi_0731
smi_0731	PF17126	smi_0731
smi_0732	PF12849	PBP superfamily domain
smi_0733	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0734	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0735	PF00005	ABC transporter
smi_0736	PF00005	ABC transporter
smi_0737	PF01895	PhoU domain
smi_0738	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_0739	PF00155	Aminotransferase class I and II
smi_0739	PF00392	Bacterial regulatory proteins, gntR family
smi_0740	PF03306	Alpha-acetolactate decarboxylase
smi_0741	PF10086	smi_0741
smi_0742	PF01565	FAD binding domain
smi_0742	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
smi_0743	PF00005	ABC transporter
smi_0743	PF08402	TOBE domain
smi_0744	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0745	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0746	PF13416	Bacterial extracellular solute-binding protein
smi_0747	PF13936	Helix-turn-helix domain
smi_0748	PF04525	Tubby C 2
smi_0749	PF01411	tRNA synthetases class II (A)
smi_0749	PF02272	DHHA1 domain
smi_0749	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
smi_0750	PF00128	Alpha amylase, catalytic domain
smi_0750	PF09154	Domain of unknown function (DUF1939)
smi_0751	PF00005	ABC transporter
smi_0753	PF00884	Sulfatase
smi_0754	PF10672	S-adenosylmethionine-dependent methyltransferase
smi_0755	PF01487	Type I 3-dehydroquinase
smi_0756	PF08501	Shikimate dehydrogenase substrate binding domain
smi_0757	PF01761	3-dehydroquinate synthase
smi_0758	PF01264	Chorismate synthase
smi_0759	PF02153	Prephenate dehydrogenase
smi_0760	PF06133	Protein of unknown function (DUF964)
smi_0762	PF04536	TLP18
smi_0763	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
smi_0764	PF01202	Shikimate kinase
smi_0765	PF00800	Prephenate dehydratase
smi_0766	PF03816	Cell envelope-related transcriptional attenuator domain
smi_0767	PF04991	smi_0767
smi_0768	PF00534	Glycosyl transferases group 1
smi_0768	PF13439	Glycosyltransferase Family 4
smi_0769	PF00535	Glycosyl transferase family 2
smi_0770	PF14296	smi_0770
smi_0772	PF05389	Negative regulator of genetic competence (MecA)
smi_0773	PF00742	Homoserine dehydrogenase
smi_0773	PF03447	Homoserine dehydrogenase, NAD binding domain
smi_0774	PF00288	GHMP kinases N terminal domain
smi_0774	PF08544	GHMP kinases C terminal
smi_0775	PF01625	Peptide methionine sulfoxide reductase
smi_0775	PF01641	SelR domain
smi_0776	PF00005	ABC transporter
smi_0776	PF00664	ABC transporter transmembrane region
smi_0777	PF00005	ABC transporter
smi_0777	PF00664	ABC transporter transmembrane region
smi_0778	PF01979	Amidohydrolase family
smi_0779	PF13936	Helix-turn-helix domain
smi_0780	PF13936	Helix-turn-helix domain
smi_0781	PF13936	Helix-turn-helix domain
smi_0782	PF13936	Helix-turn-helix domain
smi_0783	PF00466	Ribosomal protein L10
smi_0784	PF00542	Ribosomal protein L7/L12 C-terminal domain
smi_0784	PF16320	smi_0784
smi_0786	PF06970	Replication initiator protein A (RepA) N-terminus
smi_0787	PF00145	C-5 cytosine-specific DNA methylase
smi_0791	PF02517	CAAX protease self-immunity
smi_0792	PF01380	SIS domain
smi_0792	PF01418	Helix-turn-helix domain, rpiR family
smi_0793	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
smi_0794	PF00701	Dihydrodipicolinate synthetase family
smi_0795	PF00474	Sodium:solute symporter family
smi_0796	PF04074	Domain of unknown function (DUF386)
smi_0797	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
smi_0797	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
smi_0798	PF00480	ROK family
smi_0800	PF01496	V-type ATPase 116kDa subunit family
smi_0801	PF00137	ATP synthase subunit C
smi_0803	PF01992	ATP synthase (C/AC39) subunit
smi_0804	PF01990	ATP synthase (F/14-kDa) subunit
smi_0805	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
smi_0805	PF02874	ATP synthase alpha/beta family, beta-barrel domain
smi_0805	PF16886	smi_0805
smi_0806	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
smi_0806	PF02874	ATP synthase alpha/beta family, beta-barrel domain
smi_0807	PF01813	ATP synthase subunit D
smi_0809	PF01797	Transposase IS200 like
smi_0810	PF04650	smi_0810
smi_0810	PF07564	smi_0810
smi_0811	PF01797	Transposase IS200 like
smi_0813	PF01797	Transposase IS200 like
smi_0814	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
smi_0814	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
smi_0815	PF01180	Dihydroorotate dehydrogenase
smi_0816	PF06144	DNA polymerase III, delta subunit
smi_0817	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
smi_0817	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
smi_0818	PF06265	Protein of unknown function (DUF1027)
smi_0819	PF04055	Radical SAM superfamily
smi_0819	PF13394	4Fe-4S single cluster domain
smi_0820	PF04892	smi_0820
smi_0821	PF00005	ABC transporter
smi_0821	PF12848	ABC transporter
smi_0822	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
smi_0823.1	PF01381	Helix-turn-helix
smi_0825	PF00886	Ribosomal protein S16
smi_0826	PF13083	KH domain
smi_0827	PF03819	MazG nucleotide pyrophosphohydrolase domain
smi_0829	PF01782	RimM N-terminal domain
smi_0829	PF05239	PRC-barrel domain
smi_0830	PF01746	tRNA (Guanine-1)-methyltransferase
smi_0831	PF03477	ATP cone domain
smi_0834	PF02632	BioY family
smi_0836	PF00005	ABC transporter
smi_0838	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
smi_0838	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_0839	PF16576	smi_0839
smi_0840	PF00005	ABC transporter
smi_0841	PF02687	smi_0841
smi_0841	PF12704	MacB-like periplasmic core domain
smi_0842	PF01588	Putative tRNA binding domain
smi_0842	PF09334	tRNA synthetases class I (M)
smi_0843	PF00248	Aldo/keto reductase family
smi_0844	PF11195	smi_0844
smi_0845	PF13561	Enoyl-(Acyl carrier protein) reductase
smi_0846	PF00293	NUDIX domain
smi_0847	PF12746	GNAT acetyltransferase
smi_0848	PF01928	CYTH domain
smi_0849	PF04266	ASCH domain
smi_0850	PF01433	Peptidase family M1
smi_0850	PF11838	ERAP1-like C-terminal domain
smi_0851	PF00072	Response regulator receiver domain
smi_0851	PF00486	Transcriptional regulatory protein, C terminal
smi_0852	PF00512	His Kinase A (phospho-acceptor) domain
smi_0852	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0853	PF11674	smi_0853
smi_0854	PF01136	smi_0854
smi_0855	PF00270	DEAD/DEAH box helicase
smi_0855	PF00929	Exonuclease
smi_0855	PF13307	Helicase C-terminal domain
smi_0856	PF01098	smi_0856
smi_0857	PF01965	DJ-1/PfpI family
smi_0858	PF13936	Helix-turn-helix domain
smi_0859	PF13419	Haloacid dehalogenase-like hydrolase
smi_0860	PF00204	DNA gyrase B
smi_0860	PF00986	DNA gyrase B subunit, carboxyl terminus
smi_0860	PF01751	Toprim domain
smi_0860	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0861	PF06160	smi_0861
smi_0862	PF00583	Acetyltransferase (GNAT) family
smi_0863	PF08860	Domain of unknown function (DUF1827)
smi_0864	PF00293	NUDIX domain
smi_0865	PF00004	ATPase family associated with various cellular activities (AAA)
smi_0865	PF02151	UvrB/uvrC motif
smi_0865	PF07724	AAA domain (Cdc48 subfamily)
smi_0865	PF10431	C-terminal, D2-small domain, of ClpB protein
smi_0866	PF08796	Protein of unknown function (DUF1797)
smi_0867	PF00528	Binding-protein-dependent transport system inner membrane component
smi_0868	PF00005	ABC transporter
smi_0869	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
smi_0869	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
smi_0871	PF01256	Carbohydrate kinase
smi_0873	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
smi_0874	PF01676	Metalloenzyme superfamily
smi_0875	PF08002	Protein of unknown function (DUF1697)
smi_0876	PF01048	Phosphorylase superfamily
smi_0877	PF00654	Voltage gated chloride channel
smi_0878	PF00117	Glutamine amidotransferase class-I
smi_0879	PF01048	Phosphorylase superfamily
smi_0880	PF02146	Sir2 family
smi_0882	PF01649	Ribosomal protein S20
smi_0883	PF00485	Phosphoribulokinase / Uridine kinase family
smi_0885	PF13411	MerR HTH family regulatory protein
smi_0886	PF00403	Heavy-metal-associated domain
smi_0886	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
smi_0886	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_0888	PF05175	Methyltransferase small domain
smi_0889	PF00591	Glycosyl transferase family, a/b domain
smi_0889	PF02885	Glycosyl transferase family, helical bundle domain
smi_0889	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
smi_0890	PF01791	DeoC/LacD family aldolase
smi_0891	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
smi_0892	PF02608	Basic membrane protein
smi_0893	PF00005	ABC transporter
smi_0894	PF02653	smi_0894
smi_0895	PF02653	smi_0895
smi_0896	PF02660	smi_0896
smi_0897	PF00204	DNA gyrase B
smi_0897	PF00986	DNA gyrase B subunit, carboxyl terminus
smi_0897	PF01751	Toprim domain
smi_0897	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_0898	PF03235	smi_0898
smi_0903	PF13508	Acetyltransferase (GNAT) domain
smi_0905	PF00521	DNA gyrase/topoisomerase IV, subunit A
smi_0905	PF03989	DNA gyrase C-terminal domain, beta-propeller
smi_0906	PF01063	Aminotransferase class IV
smi_0907	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_0908	PF11184	smi_0908
smi_0911	PF00575	S1 RNA binding domain
smi_0912	PF13185	GAF domain
smi_0913	PF12169	DNA polymerase III subunits gamma and tau domain III
smi_0913	PF13177	DNA polymerase III, delta subunit
smi_0914	PF11676	smi_0914
smi_0915	PF00005	ABC transporter
smi_0916	PF01458	Uncharacterized protein family (UPF0051)
smi_0917	PF00266	Aminotransferase class-V
smi_0918	PF01592	NifU-like N terminal domain
smi_0919	PF01458	Uncharacterized protein family (UPF0051)
smi_0920	PF00768	D-alanyl-D-alanine carboxypeptidase
smi_0920	PF07943	Penicillin-binding protein 5, C-terminal domain
smi_0921	PF01594	smi_0921
smi_0922	PF00009	Elongation factor Tu GTP binding domain
smi_0922	PF03143	Elongation factor Tu C-terminal domain
smi_0922	PF03144	Elongation factor Tu domain 2
smi_0923	PF00270	DEAD/DEAH box helicase
smi_0923	PF00271	Helicase conserved C-terminal domain
smi_0924	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
smi_0925	PF13936	Helix-turn-helix domain
smi_0926	PF00829	Ribosomal prokaryotic L21 protein
smi_0927	PF04327	Protein of unknown function (DUF464)
smi_0928	PF01016	Ribosomal L27 protein
smi_0929	PF13936	Helix-turn-helix domain
smi_0930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
smi_0930	PF03466	LysR substrate binding domain
smi_0931	PF01252	smi_0931
smi_0932	PF00849	RNA pseudouridylate synthase
smi_0932	PF01479	S4 domain
smi_0933	PF00753	Metallo-beta-lactamase superfamily
smi_0934	PF00753	Metallo-beta-lactamase superfamily
smi_0934	PF01473	Putative cell wall binding repeat
smi_0935	PF00696	Amino acid kinase family
smi_0935	PF01472	PUA domain
smi_0936	PF00171	Aldehyde dehydrogenase family
smi_0937	PF03807	NADP oxidoreductase coenzyme F420-dependent
smi_0937	PF14748	Pyrroline-5-carboxylate reductase dimerisation
smi_0938	PF02223	Thymidylate kinase
smi_0939	PF13177	DNA polymerase III, delta subunit
smi_0940	PF06156	smi_0940
smi_0941	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
smi_0942	PF00145	C-5 cytosine-specific DNA methylase
smi_0943	PF11564	Restriction endonuclease BpuJI - N terminal
smi_0943	PF13020	smi_0943
smi_0944	PF00145	C-5 cytosine-specific DNA methylase
smi_0945	PF14355	smi_0945
smi_0948	PF01134	Glucose inhibited division protein A
smi_0949	PF00696	Amino acid kinase family
smi_0950	PF01765	Ribosome recycling factor
smi_0951	PF13509	S1 domain
smi_0952	PF06855	Protein of unknown function (DUF1250)
smi_0953	PF02562	PhoH-like protein
smi_0954	PF13302	Acetyltransferase (GNAT) domain
smi_0955	PF10531	SLBB domain
smi_0955	PF12836	Helix-hairpin-helix motif
smi_0956	PF00753	Metallo-beta-lactamase superfamily
smi_0956	PF03772	smi_0956
smi_0956	PF13567	smi_0956
smi_0957	PF00005	ABC transporter
smi_0959	PF00707	Translation initiation factor IF-3, C-terminal domain
smi_0959	PF05198	Translation initiation factor IF-3, N-terminal domain
smi_0960	PF01632	Ribosomal protein L35
smi_0961	PF00453	Ribosomal protein L20
smi_0962	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
smi_0963	PF13936	Helix-turn-helix domain
smi_0964	PF00175	Oxidoreductase NAD-binding domain
smi_0964	PF00970	Oxidoreductase FAD-binding domain
smi_0964	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
smi_0965	PF01180	Dihydroorotate dehydrogenase
smi_0966	PF01473	Putative cell wall binding repeat
smi_0966	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
smi_0967	PF05670	smi_0967
smi_0967	PF05833	Fibronectin-binding protein A N-terminus (FbpA)
smi_0968	PF02130	Uncharacterized protein family UPF0054
smi_0969	PF01219	Prokaryotic diacylglycerol kinase
smi_0970	PF01926	50S ribosome-binding GTPase
smi_0970	PF07650	KH domain
smi_0971	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
smi_0971	PF06827	Zinc finger found in FPG and IleRS
smi_0971	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
smi_0972	PF01121	Dephospho-CoA kinase
smi_0973	PF00083	Sugar (and other) transporter
smi_0973	PF07690	Major Facilitator Superfamily
smi_0974	PF00471	Ribosomal protein L33
smi_0975	PF03840	Preprotein translocase SecG subunit
smi_0976	PF00575	S1 RNA binding domain
smi_0976	PF00773	RNB domain
smi_0976	PF08206	Ribonuclease B OB domain
smi_0977	PF01668	SmpB protein
smi_0978	PF03848	Tellurite resistance protein TehB
smi_0978	PF09313	Domain of unknown function (DUF1971)
smi_0979	PF00746	smi_0979
smi_0979	PF04650	smi_0979
smi_0979	PF07564	smi_0979
smi_0980	PF06054	smi_0980
smi_0981	PF01432	Peptidase family M3
smi_0981	PF08439	Oligopeptidase F
smi_0982	PF01596	O-methyltransferase
smi_0983	PF05698	Bacterial trigger factor protein (TF) C-terminus
smi_0983	PF13145	PPIC-type PPIASE domain
smi_0984	PF01098	smi_0984
smi_0985	PF00311	Phosphoenolpyruvate carboxylase
smi_0986	PF13936	Helix-turn-helix domain
smi_0987	PF13936	Helix-turn-helix domain
smi_0988	PF04392	ABC transporter substrate binding protein
smi_0989	PF02653	smi_0989
smi_0990	PF00005	ABC transporter
smi_0991	PF01807	CHC2 zinc finger
smi_0991	PF08275	DNA primase catalytic core, N-terminal domain
smi_0991	PF13662	Toprim domain
smi_0992	PF00140	Sigma-70 factor, region 1
smi_0992	PF03979	Sigma-70 factor, region 1
smi_0992	PF04539	Sigma-70 region 3
smi_0992	PF04542	Sigma-70 region 2
smi_0992	PF04545	Sigma-70, region 4
smi_0993	PF01883	Domain of unknown function DUF59
smi_0994	PF00534	Glycosyl transferases group 1
smi_0994	PF13439	Glycosyltransferase Family 4
smi_0995	PF00534	Glycosyl transferases group 1
smi_0995	PF13439	Glycosyltransferase Family 4
smi_0996	PF04024	smi_0996
smi_0997	PF13253	smi_0997
smi_0998	PF01018	GTP1/OBG
smi_0998	PF01926	50S ribosome-binding GTPase
smi_0998	PF09269	Domain of unknown function (DUF1967)
smi_1000	PF01316	Arginine repressor, DNA binding domain
smi_1000	PF02863	Arginine repressor, C-terminal domain
smi_1001	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
smi_1001	PF08530	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
smi_1001	PF09168	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
smi_1002	PF00746	smi_1002
smi_1002	PF04650	smi_1002
smi_1003	PF01336	OB-fold nucleic acid binding domain
smi_1003	PF02811	PHP domain
smi_1003	PF07733	Bacterial DNA polymerase III alpha subunit
smi_1003	PF14579	Helix-hairpin-helix motif
smi_1004	PF00365	Phosphofructokinase
smi_1005	PF00224	Pyruvate kinase, barrel domain
smi_1005	PF02887	Pyruvate kinase, alpha/beta domain
smi_1006	PF00056	lactate/malate dehydrogenase, NAD binding domain
smi_1006	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
smi_1007	PF00521	DNA gyrase/topoisomerase IV, subunit A
smi_1007	PF03989	DNA gyrase C-terminal domain, beta-propeller
smi_1008	PF04203	Sortase family
smi_1009	PF01226	Formate/nitrite transporter
smi_1010	PF01053	Cys/Met metabolism PLP-dependent enzyme
smi_1011	PF09903	smi_1011
smi_1012	PF01509	TruB family pseudouridylate synthase (N terminal domain)
smi_1012	PF16198	smi_1012
smi_1013	PF00485	Phosphoribulokinase / Uridine kinase family
smi_1014	PF02601	smi_1014
smi_1014	PF13742	smi_1014
smi_1015	PF02609	Exonuclease VII small subunit
smi_1016	PF00348	Polyprenyl synthetase
smi_1017	PF01728	FtsJ-like methyltransferase
smi_1018	PF01316	Arginine repressor, DNA binding domain
smi_1018	PF02863	Arginine repressor, C-terminal domain
smi_1019	PF02463	RecF/RecN/SMC N terminal domain
smi_1020	PF00149	Calcineurin-like phosphoesterase
smi_1021	PF00009	Elongation factor Tu GTP binding domain
smi_1021	PF00679	Elongation factor G C-terminus
smi_1021	PF03144	Elongation factor Tu domain 2
smi_1021	PF06421	GTP-binding protein LepA C-terminus
smi_1022	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
smi_1023	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_1024	PF03611	smi_1024
smi_1025	PF01263	Aldose 1-epimerase
smi_1026	PF02502	Ribose/Galactose Isomerase
smi_1027	PF02502	Ribose/Galactose Isomerase
smi_1028	PF00294	pfkB family carbohydrate kinase
smi_1029	PF01791	DeoC/LacD family aldolase
smi_1030	PF02502	Ribose/Galactose Isomerase
smi_1031	PF02502	Ribose/Galactose Isomerase
smi_1032	PF02082	Transcriptional regulator
smi_1033	PF00892	EamA-like transporter family
smi_1035	PF13649	Methyltransferase domain
smi_1036	PF00874	PRD domain
smi_1036	PF03123	CAT RNA binding domain
smi_1037	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
smi_1038	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_1038	PF02378	Phosphotransferase system, EIIC
smi_1039	PF00232	Glycosyl hydrolase family 1
smi_1040	PF13024	smi_1040
smi_1041	PF00455	smi_1041
smi_1041	PF08220	DeoR-like helix-turn-helix domain
smi_1042	PF00268	Ribonucleotide reductase, small chain
smi_1043	PF00317	Ribonucleotide reductase, all-alpha domain
smi_1043	PF02867	Ribonucleotide reductase, barrel domain
smi_1043	PF08343	Ribonucleotide reductase N-terminal
smi_1044	PF00462	Glutaredoxin
smi_1045	PF00381	PTS HPr component phosphorylation site
smi_1046	PF00391	PEP-utilising enzyme, mobile domain
smi_1046	PF02896	PEP-utilising enzyme, TIM barrel domain
smi_1046	PF05524	PEP-utilising enzyme, N-terminal
smi_1047	PF03692	smi_1047
smi_1048	PF08020	Protein of unknown function (DUF1706)
smi_1049	PF02733	Dak1 domain
smi_1050	PF00440	Bacterial regulatory proteins, tetR family
smi_1051	PF02733	Dak1 domain
smi_1052	PF02734	DAK2 domain
smi_1054	PF13419	Haloacid dehalogenase-like hydrolase
smi_1055	PF03167	Uracil DNA glycosylase superfamily
smi_1056	PF00293	NUDIX domain
smi_1057	PF01979	Amidohydrolase family
smi_1058	PF01554	MatE
smi_1059	PF00589	Phage integrase family
smi_1060	PF08877	MepB protein
smi_1061	PF00654	Voltage gated chloride channel
smi_1061	PF02080	TrkA-C domain
smi_1062	PF01351	Ribonuclease HII
smi_1063	PF01926	50S ribosome-binding GTPase
smi_1064	PF04650	smi_1064
smi_1064	PF06458	MucBP domain
smi_1066	PF00580	UvrD/REP helicase N-terminal domain
smi_1066	PF12705	PD-(D/E)XK nuclease superfamily
smi_1066	PF13361	UvrD-like helicase C-terminal domain
smi_1067	PF12705	PD-(D/E)XK nuclease superfamily
smi_1068	PF13936	Helix-turn-helix domain
smi_1069	PF08282	haloacid dehalogenase-like hydrolase
smi_1070	PF00005	ABC transporter
smi_1071	PF12730	smi_1071
smi_1072	PF00512	His Kinase A (phospho-acceptor) domain
smi_1072	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1073	PF00072	Response regulator receiver domain
smi_1073	PF00486	Transcriptional regulatory protein, C terminal
smi_1074	PF01988	smi_1074
smi_1075	PF02687	smi_1075
smi_1076	PF00005	ABC transporter
smi_1079	PF04024	smi_1079
smi_1080	PF10263	smi_1080
smi_1081	PF00575	S1 RNA binding domain
smi_1081	PF09371	Tex-like protein N-terminal domain
smi_1081	PF12836	Helix-hairpin-helix motif
smi_1081	PF16921	smi_1081
smi_1084	PF03773	smi_1084
smi_1085	PF09323	smi_1085
smi_1087	PF13936	Helix-turn-helix domain
smi_1090	PF00580	UvrD/REP helicase N-terminal domain
smi_1090	PF12705	PD-(D/E)XK nuclease superfamily
smi_1090	PF13361	UvrD-like helicase C-terminal domain
smi_1092	PF00004	ATPase family associated with various cellular activities (AAA)
smi_1092	PF07724	AAA domain (Cdc48 subfamily)
smi_1094	PF13280	smi_1094
smi_1095	PF07693	smi_1095
smi_1096	PF12710	haloacid dehalogenase-like hydrolase
smi_1097	PF13328	HD domain
smi_1101	PF06414	Zeta toxin
smi_1102	PF01381	Helix-turn-helix
smi_1104	PF00128	Alpha amylase, catalytic domain
smi_1104	PF02903	Alpha amylase, N-terminal ig-like domain
smi_1105	PF00781	Diacylglycerol kinase catalytic domain
smi_1106	PF03747	ADP-ribosylglycohydrolase
smi_1107	PF12697	Alpha/beta hydrolase family
smi_1108	PF08713	DNA alkylation repair enzyme
smi_1109	PF07690	Major Facilitator Superfamily
smi_1110	PF03575	Peptidase family S51
smi_1111	PF00583	Acetyltransferase (GNAT) family
smi_1116	PF14243	smi_1116
smi_1119	PF05958	tRNA (Uracil-5-)-methyltransferase
smi_1120	PF06207	smi_1120
smi_1121	PF13702	Lysozyme-like
smi_1122	PF04245	smi_1122
smi_1123	PF00464	Serine hydroxymethyltransferase
smi_1124	PF00583	Acetyltransferase (GNAT) family
smi_1125	PF01300	Telomere recombination
smi_1126	PF05175	Methyltransferase small domain
smi_1127	PF00472	RF-1 domain
smi_1127	PF03462	PCRF domain
smi_1128	PF13673	Acetyltransferase (GNAT) domain
smi_1129	PF00265	Thymidine kinase
smi_1130	PF01361	Tautomerase enzyme
smi_1131	PF01926	50S ribosome-binding GTPase
smi_1131	PF10396	GTP-binding protein TrmE N-terminus
smi_1131	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
smi_1132	PF00701	Dihydrodipicolinate synthetase family
smi_1133	PF01118	Semialdehyde dehydrogenase, NAD binding domain
smi_1133	PF02774	Semialdehyde dehydrogenase, dimerisation domain
smi_1135	PF06177	smi_1135
smi_1136	PF04138	smi_1136
smi_1137	PF01741	Large-conductance mechanosensitive channel, MscL
smi_1138	PF00762	Ferrochelatase
smi_1139	PF01546	Peptidase family M20/M25/M40
smi_1139	PF07687	Peptidase dimerisation domain
smi_1140	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
smi_1140	PF08388	smi_1140
smi_1141	PF04270	Streptococcal histidine triad protein
smi_1142	PF04270	Streptococcal histidine triad protein
smi_1142	PF16645	smi_1142
smi_1143	PF01297	Periplasmic solute binding protein family
smi_1144	PF13520	Amino acid permease
smi_1145	PF00578	AhpC/TSA family
smi_1146	PF02683	smi_1146
smi_1147	PF13359	smi_1147
smi_1148	PF13613	smi_1148
smi_1149	PF02683	smi_1149
smi_1150	PF00216	Bacterial DNA-binding protein
smi_1151	PF02645	Uncharacterised protein, DegV family COG1307
smi_1152	PF02588	smi_1152
smi_1152	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
smi_1153	PF01687	Riboflavin kinase
smi_1153	PF06574	FAD synthetase
smi_1154	PF00557	Metallopeptidase family M24
smi_1155	PF00392	Bacterial regulatory proteins, gntR family
smi_1155	PF00571	CBS domain
smi_1155	PF03061	Thioesterase superfamily
smi_1155	PF07085	DRTGG domain
smi_1156	PF13302	Acetyltransferase (GNAT) domain
smi_1157	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
smi_1158	PF13936	Helix-turn-helix domain
smi_1159	PF00113	Enolase, C-terminal TIM barrel domain
smi_1159	PF03952	Enolase, N-terminal domain
smi_1160	PF07997	Protein of unknown function (DUF1694)
smi_1161	PF02595	Glycerate kinase family
smi_1162	PF12710	haloacid dehalogenase-like hydrolase
smi_1163	PF00534	Glycosyl transferases group 1
smi_1163	PF08323	Starch synthase catalytic domain
smi_1164	PF00483	Nucleotidyl transferase
smi_1165	PF00483	Nucleotidyl transferase
smi_1166	PF00128	Alpha amylase, catalytic domain
smi_1166	PF02806	Alpha amylase, C-terminal all-beta domain
smi_1166	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
smi_1167	PF13936	Helix-turn-helix domain
smi_1168	PF00128	Alpha amylase, catalytic domain
smi_1168	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
smi_1168	PF03714	Bacterial pullanase-associated domain
smi_1169	PF00533	BRCA1 C Terminus (BRCT) domain
smi_1169	PF01653	NAD-dependent DNA ligase adenylation domain
smi_1169	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
smi_1169	PF03120	NAD-dependent DNA ligase OB-fold domain
smi_1169	PF12826	Helix-hairpin-helix motif
smi_1169	PF14520	Helix-hairpin-helix domain
smi_1170	PF07690	Major Facilitator Superfamily
smi_1172	PF00005	ABC transporter
smi_1172	PF12848	ABC transporter
smi_1172	PF16326	smi_1172
smi_1173	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
smi_1173	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
smi_1173	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
smi_1173	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
smi_1175	PF00753	Metallo-beta-lactamase superfamily
smi_1176	PF00512	His Kinase A (phospho-acceptor) domain
smi_1176	PF00989	PAS fold
smi_1176	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1177	PF00072	Response regulator receiver domain
smi_1177	PF00486	Transcriptional regulatory protein, C terminal
smi_1178	PF00633	Helix-hairpin-helix motif
smi_1178	PF00730	HhH-GPD superfamily base excision DNA repair protein
smi_1178	PF14815	NUDIX domain
smi_1179	PF01515	Phosphate acetyl/butaryl transferase
smi_1180	PF00849	RNA pseudouridylate synthase
smi_1181	PF01513	ATP-NAD kinase
smi_1182	PF04607	Region found in RelA / SpoT proteins
smi_1183	PF01928	CYTH domain
smi_1184	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
smi_1184	PF14572	Phosphoribosyl synthetase-associated domain
smi_1185	PF00266	Aminotransferase class-V
smi_1186	PF08866	Putative amino acid metabolism
smi_1187	PF15507	Domain of unknown function (DUF4649)
smi_1188	PF02629	CoA binding domain
smi_1188	PF06971	Putative DNA-binding protein N-terminus
smi_1189	PF07722	Peptidase C26
smi_1190	PF04002	RadC-like JAB domain
smi_1191	PF00580	UvrD/REP helicase N-terminal domain
smi_1191	PF13361	UvrD-like helicase C-terminal domain
smi_1192	PF01268	Formate--tetrahydrofolate ligase
smi_1193	PF04127	DNA / pantothenate metabolism flavoprotein
smi_1194	PF02441	Flavoprotein
smi_1195	PF12822	Protein of unknown function (DUF3816)
smi_1196	PF07155	ECF-type riboflavin transporter, S component
smi_1197	PF02829	3H domain
smi_1197	PF08279	HTH domain
smi_1198	PF00293	NUDIX domain
smi_1199	PF00583	Acetyltransferase (GNAT) family
smi_1200	PF13302	Acetyltransferase (GNAT) domain
smi_1201	PF00271	Helicase conserved C-terminal domain
smi_1201	PF02151	UvrB/uvrC motif
smi_1201	PF04851	Type III restriction enzyme, res subunit
smi_1201	PF12344	Ultra-violet resistance protein B
smi_1202	PF02517	CAAX protease self-immunity
smi_1203	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1203	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1204	PF00005	ABC transporter
smi_1205	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
smi_1205	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
smi_1206	PF00448	SRP54-type protein, GTPase domain
smi_1206	PF02881	SRP54-type protein, helical bundle domain
smi_1207	PF08282	haloacid dehalogenase-like hydrolase
smi_1208	PF08282	haloacid dehalogenase-like hydrolase
smi_1209	PF02463	RecF/RecN/SMC N terminal domain
smi_1209	PF06470	SMC proteins Flexible Hinge Domain
smi_1210	PF00035	Double-stranded RNA binding motif
smi_1210	PF14622	Ribonuclease-III-like
smi_1212	PF00478	IMP dehydrogenase / GMP reductase domain
smi_1213	PF01300	Telomere recombination
smi_1214	PF00694	Aconitase C-terminal domain
smi_1215	PF00330	Aconitase family (aconitate hydratase)
smi_1216	PF06961	smi_1216
smi_1217	PF00180	Isocitrate/isopropylmalate dehydrogenase
smi_1218	PF00682	HMGL-like
smi_1218	PF08502	LeuA allosteric (dimerisation) domain
smi_1219	PF04237	YjbR
smi_1220	PF03932	CutC family
smi_1221	PF04304	smi_1221
smi_1222	PF01131	DNA topoisomerase
smi_1222	PF01396	smi_1222
smi_1222	PF01751	Toprim domain
smi_1223	PF02481	DNA recombination-mediator protein A
smi_1224	PF12804	MobA-like NTP transferase domain
smi_1225	PF00892	EamA-like transporter family
smi_1226	PF01633	Choline/ethanolamine kinase
smi_1227	PF08240	Alcohol dehydrogenase GroES-like domain
smi_1228	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
smi_1229	PF01943	smi_1229
smi_1230	PF04991	smi_1230
smi_1231	PF04991	smi_1231
smi_1232	PF01566	smi_1232
smi_1233	PF02142	MGS-like domain
smi_1233	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
smi_1233	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
smi_1234	PF00117	Glutamine amidotransferase class-I
smi_1234	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
smi_1235	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
smi_1235	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
smi_1236	PF00156	Phosphoribosyl transferase domain
smi_1237	PF00633	Helix-hairpin-helix motif
smi_1237	PF00730	HhH-GPD superfamily base excision DNA repair protein
smi_1238	PF02620	smi_1238
smi_1240	PF00005	ABC transporter
smi_1241	PF01435	Peptidase family M48
smi_1242	PF04011	LemA family
smi_1243	PF02527	rRNA small subunit methyltransferase G
smi_1244	PF00860	Permease family
smi_1247	PF04851	Type III restriction enzyme, res subunit
smi_1249	PF01555	DNA methylase
smi_1250	PF14335	smi_1250
smi_1251	PF00176	SNF2 family N-terminal domain
smi_1251	PF00271	Helicase conserved C-terminal domain
smi_1252	PF00448	SRP54-type protein, GTPase domain
smi_1252	PF02881	SRP54-type protein, helical bundle domain
smi_1252	PF02978	Signal peptide binding domain
smi_1253	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
smi_1254	PF09148	Domain of unknown function (DUF1934)
smi_1255	PF01966	HD domain
smi_1256	PF08282	haloacid dehalogenase-like hydrolase
smi_1257	PF07690	Major Facilitator Superfamily
smi_1258	PF01928	CYTH domain
smi_1259	PF01381	Helix-turn-helix
smi_1260	PF00589	Phage integrase family
smi_1261	PF01934	Protein of unknown function DUF86
smi_1262	PF01909	Nucleotidyltransferase domain
smi_1263	PF04221	RelB antitoxin
smi_1265	PF01245	Ribosomal protein L19
smi_1266	PF02537	smi_1266
smi_1267	PF02537	smi_1267
smi_1268	PF01817	Chorismate mutase type II
smi_1269	PF00258	Flavodoxin
smi_1270	PF01368	DHH family
smi_1271	PF01197	Ribosomal protein L31
smi_1272	PF04221	RelB antitoxin
smi_1273	PF05016	Plasmid stabilisation system protein
smi_1274	PF02416	mttA/Hcf106 family
smi_1275	PF00902	Sec-independent protein translocase protein (TatC)
smi_1276	PF03239	smi_1276
smi_1277	PF04261	Dyp-type peroxidase family
smi_1278	PF09375	Imelysin
smi_1279	PF00239	Resolvase, N terminal domain
smi_1280	PF01473	Putative cell wall binding repeat
smi_1283	PF02575	YbaB/EbfC DNA-binding family
smi_1284	PF03009	Glycerophosphoryl diester phosphodiesterase family
smi_1284	PF10110	smi_1284
smi_1285	PF00929	Exonuclease
smi_1287	PF04394	smi_1287
smi_1287	PF13412	Winged helix-turn-helix DNA-binding
smi_1288	PF01048	Phosphorylase superfamily
smi_1290	PF00293	NUDIX domain
smi_1291	PF00483	Nucleotidyl transferase
smi_1291	PF14602	Hexapeptide repeat of succinyl-transferase
smi_1292	PF01183	Glycosyl hydrolases family 25
smi_1293	PF04018	smi_1293
smi_1294	PF04073	Aminoacyl-tRNA editing domain
smi_1295	PF00300	Histidine phosphatase superfamily (branch 1)
smi_1296	PF00152	tRNA synthetases class II (D, K and N)
smi_1296	PF01336	OB-fold nucleic acid binding domain
smi_1297	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1298	PF00005	ABC transporter
smi_1299	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1300	PF13181	Tetratricopeptide repeat
smi_1300	PF13432	Tetratricopeptide repeat
smi_1301	PF01594	smi_1301
smi_1302	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_1303	PF13936	Helix-turn-helix domain
smi_1304	PF10282	Lactonase, 7-bladed beta-propeller
smi_1305	PF01610	smi_1305
smi_1306	PF00746	smi_1306
smi_1306	PF04650	smi_1306
smi_1306	PF07564	smi_1306
smi_1308	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
smi_1308	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
smi_1309	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
smi_1309	PF02874	ATP synthase alpha/beta family, beta-barrel domain
smi_1310	PF00231	ATP synthase
smi_1311	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
smi_1311	PF00306	ATP synthase alpha/beta chain, C terminal domain
smi_1311	PF02874	ATP synthase alpha/beta family, beta-barrel domain
smi_1312	PF00213	ATP synthase delta (OSCP) subunit
smi_1313	PF00430	ATP synthase B/B' CF(0)
smi_1314	PF00119	ATP synthase A chain
smi_1315	PF00137	ATP synthase subunit C
smi_1316	PF01136	smi_1316
smi_1316	PF16325	smi_1316
smi_1317	PF00746	smi_1317
smi_1317	PF07501	G5 domain
smi_1318	PF13175	AAA ATPase domain
smi_1319	PF00580	UvrD/REP helicase N-terminal domain
smi_1319	PF13361	UvrD-like helicase C-terminal domain
smi_1320	PF06125	Bacterial protein of unknown function (DUF961)
smi_1321	PF06125	Bacterial protein of unknown function (DUF961)
smi_1323	PF01580	FtsK/SpoIIIE family
smi_1324	PF01381	Helix-turn-helix
smi_1324	PF02486	smi_1324
smi_1326	PF14355	smi_1326
smi_1327	PF07275	Antirestriction protein (ArdA)
smi_1329	PF12648	smi_1329
smi_1330	PF12846	AAA-like domain
smi_1332	PF00877	NlpC/P60 family
smi_1332	PF13702	Lysozyme-like
smi_1333	PF12642	Conjugative transposon protein TcpC
smi_1334	PF00009	Elongation factor Tu GTP binding domain
smi_1334	PF00679	Elongation factor G C-terminus
smi_1334	PF03764	Elongation factor G, domain IV
smi_1334	PF14492	Elongation Factor G, domain II
smi_1335	PF14205	smi_1335
smi_1336	PF01381	Helix-turn-helix
smi_1338	PF08281	Sigma-70, region 4
smi_1339	PF12645	smi_1339
smi_1340	PF11372	smi_1340
smi_1341	PF00589	Phage integrase family
smi_1341	PF14657	smi_1341
smi_1341	PF14659	Phage integrase, N-terminal SAM-like domain
smi_1342	PF00117	Glutamine amidotransferase class-I
smi_1342	PF00958	GMP synthase C terminal domain
smi_1342	PF02540	NAD synthase
smi_1343	PF00392	Bacterial regulatory proteins, gntR family
smi_1343	PF07702	UTRA domain
smi_1344	PF00892	EamA-like transporter family
smi_1345	PF00144	Beta-lactamase
smi_1346	PF14506	CppA N-terminal
smi_1346	PF14507	CppA C-terminal
smi_1347	PF00230	Major intrinsic protein
smi_1348	PF01473	Putative cell wall binding repeat
smi_1349	PF01381	Helix-turn-helix
smi_1350	PF13535	ATP-grasp domain
smi_1351	PF00756	Putative esterase
smi_1352	PF00756	Putative esterase
smi_1353	PF02568	Thiamine biosynthesis protein (ThiI)
smi_1353	PF02926	THUMP domain
smi_1354	PF00266	Aminotransferase class-V
smi_1356	PF01580	FtsK/SpoIIIE family
smi_1356	PF09397	Ftsk gamma domain
smi_1357	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
smi_1357	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
smi_1357	PF02378	Phosphotransferase system, EIIC
smi_1358	PF00294	pfkB family carbohydrate kinase
smi_1359	PF00455	smi_1359
smi_1359	PF08220	DeoR-like helix-turn-helix domain
smi_1361	PF01609	Transposase DDE domain
smi_1361	PF05598	smi_1361
smi_1365	PF00665	Integrase core domain
smi_1365	PF13276	smi_1365
smi_1367	PF00717	Peptidase S24-like
smi_1367	PF13443	Cro/C1-type HTH DNA-binding domain
smi_1369	PF02452	PemK-like protein
smi_1371	PF04103	smi_1371
smi_1374	PF13472	GDSL-like Lipase/Acylhydrolase family
smi_1375	PF08282	haloacid dehalogenase-like hydrolase
smi_1376	PF09587	Bacterial capsule synthesis protein PGA_cap
smi_1377	PF01327	Polypeptide deformylase
smi_1378	PF00588	SpoU rRNA Methylase family
smi_1378	PF08032	RNA 2'-O ribose methyltransferase substrate binding
smi_1379	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_1380	PF13268	smi_1380
smi_1381	PF00005	ABC transporter
smi_1382	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1383	PF03960	ArsC family
smi_1384	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
smi_1385	PF00583	Acetyltransferase (GNAT) family
smi_1386	PF08876	smi_1386
smi_1387	PF03006	smi_1387
smi_1388	PF01174	SNO glutamine amidotransferase family
smi_1389	PF01680	SOR/SNZ family
smi_1390	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
smi_1390	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_1391	PF02424	ApbE family
smi_1392	PF03358	NADPH-dependent FMN reductase
smi_1393	PF03358	NADPH-dependent FMN reductase
smi_1393	PF13596	PAS domain
smi_1394	PF05979	Bacterial protein of unknown function (DUF896)
smi_1395	PF02092	smi_1395
smi_1396	PF02091	Glycyl-tRNA synthetase alpha subunit
smi_1398	PF00082	Subtilase family
smi_1398	PF02225	PA domain
smi_1398	PF06280	Fn3-like domain (DUF1034)
smi_1399	PF01522	Polysaccharide deacetylase
smi_1400	PF00438	S-adenosylmethionine synthetase, N-terminal domain
smi_1400	PF02772	S-adenosylmethionine synthetase, central domain
smi_1400	PF02773	S-adenosylmethionine synthetase, C-terminal domain
smi_1402	PF00270	DEAD/DEAH box helicase
smi_1402	PF00271	Helicase conserved C-terminal domain
smi_1403	PF03372	Endonuclease/Exonuclease/phosphatase family
smi_1404	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
smi_1404	PF00367	phosphotransferase system, EIIB
smi_1404	PF02378	Phosphotransferase system, EIIC
smi_1405	PF13936	Helix-turn-helix domain
smi_1406	PF02687	smi_1406
smi_1407	PF00005	ABC transporter
smi_1408	PF00472	RF-1 domain
smi_1408	PF03462	PCRF domain
smi_1409	PF13936	Helix-turn-helix domain
smi_1410	PF00571	CBS domain
smi_1411	PF00005	ABC transporter
smi_1412	PF00005	ABC transporter
smi_1412	PF12399	Branched-chain amino acid ATP-binding cassette transporter
smi_1413	PF02653	smi_1413
smi_1414	PF02653	smi_1414
smi_1415	PF13458	Periplasmic binding protein
smi_1416	PF09902	smi_1416
smi_1417	PF00574	Clp protease
smi_1418	PF14681	Uracil phosphoribosyltransferase
smi_1419	PF13936	Helix-turn-helix domain
smi_1420	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
smi_1421	PF00440	Bacterial regulatory proteins, tetR family
smi_1422	PF02645	Uncharacterised protein, DegV family COG1307
smi_1423	PF03486	HI0933-like protein
smi_1424	PF08002	Protein of unknown function (DUF1697)
smi_1425	PF07739	TipAS antibiotic-recognition domain
smi_1425	PF13411	MerR HTH family regulatory protein
smi_1426	PF00209	Sodium:neurotransmitter symporter family
smi_1427	PF01238	Phosphomannose isomerase type I
smi_1428	PF03083	Sugar efflux transporter for intercellular exchange
smi_1429	PF00005	ABC transporter
smi_1429	PF00664	ABC transporter transmembrane region
smi_1431	PF00205	Thiamine pyrophosphate enzyme, central domain
smi_1431	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
smi_1431	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
smi_1432	PF00122	E1-E2 ATPase
smi_1432	PF00702	haloacid dehalogenase-like hydrolase
smi_1432	PF13473	Cupredoxin-like domain
smi_1433	PF13473	Cupredoxin-like domain
smi_1434	PF03965	Penicillinase repressor
smi_1435	PF01070	FMN-dependent dehydrogenase
smi_1436	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1437	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1438	PF00005	ABC transporter
smi_1439	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1440	PF00005	ABC transporter
smi_1445	PF00156	Phosphoribosyl transferase domain
smi_1446	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
smi_1447	PF03799	Cell division protein FtsQ
smi_1447	PF08478	POTRA domain, FtsQ-type
smi_1448	PF03033	Glycosyltransferase family 28 N-terminal domain
smi_1448	PF04101	Glycosyltransferase family 28 C-terminal domain
smi_1449	PF02875	Mur ligase family, glutamate ligase domain
smi_1449	PF08245	Mur ligase middle domain
smi_1450	PF00005	ABC transporter
smi_1451	PF07242	smi_1451
smi_1452	PF01610	smi_1452
smi_1452	PF13542	smi_1452
smi_1452	PF14690	smi_1452
smi_1453	PF00009	Elongation factor Tu GTP binding domain
smi_1453	PF00679	Elongation factor G C-terminus
smi_1453	PF03144	Elongation factor Tu domain 2
smi_1454	PF00849	RNA pseudouridylate synthase
smi_1455	PF00581	Rhodanese-like domain
smi_1456	PF06014	Bacterial protein of unknown function (DUF910)
smi_1457	PF00072	Response regulator receiver domain
smi_1457	PF00196	Bacterial regulatory proteins, luxR family
smi_1459	PF02687	smi_1459
smi_1460	PF00005	ABC transporter
smi_1461	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
smi_1461	PF03466	LysR substrate binding domain
smi_1463	PF00004	ATPase family associated with various cellular activities (AAA)
smi_1466	PF12182	Bacterial lipoprotein
smi_1468	PF13151	smi_1468
smi_1470	PF01381	Helix-turn-helix
smi_1471	PF00106	short chain dehydrogenase
smi_1472	PF00753	Metallo-beta-lactamase superfamily
smi_1472	PF12706	Beta-lactamase superfamily domain
smi_1474	PF01926	50S ribosome-binding GTPase
smi_1474	PF13167	smi_1474
smi_1474	PF16360	smi_1474
smi_1475	PF01715	IPP transferase
smi_1476	PF11240	smi_1476
smi_1477	PF00303	Thymidylate synthase
smi_1478	PF00480	ROK family
smi_1479	PF01473	Putative cell wall binding repeat
smi_1479	PF05901	smi_1479
smi_1480	PF12697	Alpha/beta hydrolase family
smi_1481	PF00425	chorismate binding enzyme
smi_1481	PF01063	Aminotransferase class IV
smi_1482	PF04650	smi_1482
smi_1482	PF05342	smi_1482
smi_1482	PF07501	G5 domain
smi_1482	PF07580	smi_1482
smi_1483	PF04260	Protein of unknown function (DUF436)
smi_1484	PF00672	HAMP domain
smi_1484	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1484	PF02743	Cache domain
smi_1484	PF06580	smi_1484
smi_1485	PF00072	Response regulator receiver domain
smi_1485	PF12833	Helix-turn-helix domain
smi_1486	PF01625	Peptide methionine sulfoxide reductase
smi_1486	PF01641	SelR domain
smi_1487	PF00578	AhpC/TSA family
smi_1488	PF02683	smi_1488
smi_1489	PF12784	smi_1489
smi_1490	PF13302	Acetyltransferase (GNAT) domain
smi_1491	PF02540	NAD synthase
smi_1492	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
smi_1494	PF01381	Helix-turn-helix
smi_1496	PF13673	Acetyltransferase (GNAT) domain
smi_1497	PF00324	Amino acid permease
smi_1498	PF01272	Transcription elongation factor, GreA/GreB, C-term
smi_1498	PF03449	Transcription elongation factor, N-terminal
smi_1499	PF02618	YceG-like family
smi_1500	PF13673	Acetyltransferase (GNAT) domain
smi_1501	PF13673	Acetyltransferase (GNAT) domain
smi_1502	PF01225	Mur ligase family, catalytic domain
smi_1502	PF02875	Mur ligase family, glutamate ligase domain
smi_1502	PF08245	Mur ligase middle domain
smi_1504	PF00176	SNF2 family N-terminal domain
smi_1504	PF00271	Helicase conserved C-terminal domain
smi_1504	PF08455	smi_1504
smi_1506	PF07751	smi_1506
smi_1507	PF00155	Aminotransferase class I and II
smi_1508	PF01053	Cys/Met metabolism PLP-dependent enzyme
smi_1510	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_1511	PF01943	smi_1511
smi_1511	PF14667	Polysaccharide biosynthesis C-terminal domain
smi_1512	PF02875	Mur ligase family, glutamate ligase domain
smi_1512	PF08245	Mur ligase middle domain
smi_1513	PF05532	CsbD-like
smi_1514	PF08820	smi_1514
smi_1515	PF05708	Orthopoxvirus protein of unknown function (DUF830)
smi_1516	PF01368	DHH family
smi_1516	PF02833	DHHA2 domain
smi_1517	PF01541	GIY-YIG catalytic domain
smi_1518	PF05175	Methyltransferase small domain
smi_1519	PF00575	S1 RNA binding domain
smi_1520	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
smi_1520	PF08282	haloacid dehalogenase-like hydrolase
smi_1521	PF01084	Ribosomal protein S18
smi_1522	PF00436	Single-strand binding protein family
smi_1523	PF01250	Ribosomal protein S6
smi_1524	PF13936	Helix-turn-helix domain
smi_1525	PF00152	tRNA synthetases class II (D, K and N)
smi_1525	PF01336	OB-fold nucleic acid binding domain
smi_1526	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
smi_1527	PF00155	Aminotransferase class I and II
smi_1529	PF07690	Major Facilitator Superfamily
smi_1530	PF03358	NADPH-dependent FMN reductase
smi_1531	PF01391	Collagen triple helix repeat (20 copies)
smi_1531	PF04650	smi_1531
smi_1531	PF07501	G5 domain
smi_1532	PF05043	Mga helix-turn-helix domain
smi_1532	PF08270	smi_1532
smi_1532	PF08280	M protein trans-acting positive regulator (MGA) HTH domain
smi_1533	PF03883	smi_1533
smi_1534	PF00703	Glycosyl hydrolases family 2
smi_1534	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
smi_1534	PF02837	Glycosyl hydrolases family 2, sugar binding domain
smi_1534	PF04650	smi_1534
smi_1534	PF07501	G5 domain
smi_1534	PF07532	smi_1534
smi_1534	PF16355	smi_1534
smi_1535	PF01610	smi_1535
smi_1535	PF13542	smi_1535
smi_1535	PF14690	smi_1535
smi_1536	PF01548	smi_1536
smi_1536	PF02371	smi_1536
smi_1537	PF00728	Glycosyl hydrolase family 20, catalytic domain
smi_1537	PF00754	F5/8 type C domain
smi_1537	PF02838	Glycosyl hydrolase family 20, domain 2
smi_1537	PF04650	smi_1537
smi_1537	PF07555	beta-N-acetylglucosaminidase
smi_1538	PF00754	F5/8 type C domain
smi_1538	PF04650	smi_1538
smi_1538	PF12905	Endo-alpha-N-acetylgalactosaminidase
smi_1538	PF13365	Trypsin-like peptidase domain
smi_1539	PF03883	smi_1539
smi_1540	PF13129	smi_1540
smi_1542	PF01327	Polypeptide deformylase
smi_1543	PF00122	E1-E2 ATPase
smi_1543	PF00689	Cation transporting ATPase, C-terminus
smi_1543	PF00690	Cation transporter/ATPase, N-terminus
smi_1543	PF00702	haloacid dehalogenase-like hydrolase
smi_1544	PF01545	Cation efflux family
smi_1544	PF16916	smi_1544
smi_1545	PF00005	ABC transporter
smi_1545	PF12848	ABC transporter
smi_1545	PF16326	smi_1545
smi_1546	PF01743	Poly A polymerase head domain
smi_1546	PF12627	Probable RNA and SrmB- binding site of polymerase A
smi_1546	PF13735	tRNA nucleotidyltransferase domain 2 putative
smi_1547	PF01113	Dihydrodipicolinate reductase, N-terminus
smi_1547	PF05173	Dihydrodipicolinate reductase, C-terminus
smi_1548	PF02645	Uncharacterised protein, DegV family COG1307
smi_1549	PF06619	Protein of unknown function (DUF1149)
smi_1550	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
smi_1550	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
smi_1550	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
smi_1550	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
smi_1551	PF07949	YbbR-like protein
smi_1552	PF02457	DisA bacterial checkpoint controller nucleotide-binding
smi_1553	PF07992	Pyridine nucleotide-disulphide oxidoreductase
smi_1554	PF02650	WhiA C-terminal HTH domain
smi_1554	PF10298	WhiA N-terminal LAGLIDADG-like domain
smi_1554	PF14527	WhiA LAGLIDADG-like domain
smi_1555	PF01933	Uncharacterised protein family UPF0052
smi_1556	PF03668	smi_1556
smi_1557	PF01042	Endoribonuclease L-PSP
smi_1558	PF01926	50S ribosome-binding GTPase
smi_1559	PF06689	ClpX C4-type zinc finger
smi_1559	PF07724	AAA domain (Cdc48 subfamily)
smi_1559	PF10431	C-terminal, D2-small domain, of ClpB protein
smi_1561	PF00186	Dihydrofolate reductase
smi_1562	PF00210	Ferritin-like domain
smi_1563	PF01183	Glycosyl hydrolases family 25
smi_1563	PF01473	Putative cell wall binding repeat
smi_1564	PF00121	Triosephosphate isomerase
smi_1565	PF07261	Replication initiation and membrane attachment
smi_1566	PF04204	Homoserine O-succinyltransferase
smi_1567	PF00156	Phosphoribosyl transferase domain
smi_1568	PF13847	Methyltransferase domain
smi_1569	PF00687	Ribosomal protein L1p/L10e family
smi_1570	PF00298	Ribosomal protein L11, RNA binding domain
smi_1570	PF03946	Ribosomal protein L11, N-terminal domain
smi_1571	PF02557	D-alanyl-D-alanine carboxypeptidase
smi_1572	PF01230	HIT domain
smi_1573	PF05343	M42 glutamyl aminopeptidase
smi_1574	PF05525	smi_1574
smi_1575	PF00581	Rhodanese-like domain
smi_1576	PF03167	Uracil DNA glycosylase superfamily
smi_1577	PF01546	Peptidase family M20/M25/M40
smi_1578	PF00881	Nitroreductase family
smi_1579	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1580	PF12850	Calcineurin-like phosphoesterase superfamily domain
smi_1581	PF01541	GIY-YIG catalytic domain
smi_1581	PF02151	UvrB/uvrC motif
smi_1581	PF08459	UvrC Helix-hairpin-helix N-terminal
smi_1582	PF00413	Matrixin
smi_1583	PF02388	FemAB family
smi_1584	PF02388	FemAB family
smi_1585	PF00756	Putative esterase
smi_1586	PF00753	Metallo-beta-lactamase superfamily
smi_1586	PF07521	RNA-metabolising metallo-beta-lactamase
smi_1587	PF01368	DHH family
smi_1587	PF02272	DHHA1 domain
smi_1587	PF10141	smi_1587
smi_1588	PF00005	ABC transporter
smi_1589	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1590	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1591	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1592	PF00005	ABC transporter
smi_1592	PF08402	TOBE domain
smi_1593	PF13556	PucR C-terminal helix-turn-helix domain
smi_1594	PF00636	Ribonuclease III domain
smi_1595	PF01406	tRNA synthetases class I (C) catalytic domain
smi_1595	PF09190	DALR domain
smi_1596	PF13673	Acetyltransferase (GNAT) domain
smi_1597	PF00132	Bacterial transferase hexapeptide (six repeats)
smi_1598	PF00013	KH domain
smi_1598	PF00575	S1 RNA binding domain
smi_1598	PF01138	3' exoribonuclease family, domain 1
smi_1598	PF03725	3' exoribonuclease family, domain 2
smi_1598	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
smi_1599	PF02219	Methylenetetrahydrofolate reductase
smi_1600	PF01717	Cobalamin-independent synthase, Catalytic domain
smi_1600	PF08267	Cobalamin-independent synthase, N-terminal domain
smi_1601	PF01609	Transposase DDE domain
smi_1601	PF05598	smi_1601
smi_1602	PF03013	Pyrimidine dimer DNA glycosylase
smi_1603	PF08349	smi_1603
smi_1604	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
smi_1604	PF04851	Type III restriction enzyme, res subunit
smi_1604	PF12008	Type I restriction and modification enzyme - subunit R C terminal
smi_1605	PF01420	Type I restriction modification DNA specificity domain
smi_1606	PF01420	Type I restriction modification DNA specificity domain
smi_1607	PF01420	Type I restriction modification DNA specificity domain
smi_1608	PF13310	smi_1608
smi_1609	PF02384	N-6 DNA Methylase
smi_1609	PF12161	HsdM N-terminal domain
smi_1610	PF14022	smi_1610
smi_1613	PF09335	smi_1613
smi_1614	PF00480	ROK family
smi_1615	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
smi_1615	PF00367	phosphotransferase system, EIIB
smi_1615	PF02378	Phosphotransferase system, EIIC
smi_1616	PF00251	Glycosyl hydrolases family 32 N-terminal domain
smi_1616	PF08244	Glycosyl hydrolases family 32 C terminal
smi_1617	PF00356	Bacterial regulatory proteins, lacI family
smi_1617	PF13377	Periplasmic binding protein-like domain
smi_1618	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
smi_1619	PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal
smi_1619	PF08540	Hydroxymethylglutaryl-coenzyme A synthase C terminal
smi_1620	PF12821	smi_1620
smi_1621	PF06738	smi_1621
smi_1622	PF00069	Protein kinase domain
smi_1622	PF03793	PASTA domain
smi_1623	PF13672	Protein phosphatase 2C
smi_1624	PF01029	NusB family
smi_1624	PF01189	NOL1/NOP2/sun family
smi_1625	PF00551	Formyl transferase
smi_1625	PF02911	Formyl transferase, C-terminal domain
smi_1626	PF00271	Helicase conserved C-terminal domain
smi_1626	PF04851	Type III restriction enzyme, res subunit
smi_1627	PF01192	RNA polymerase Rpb6
smi_1628	PF00625	Guanylate kinase
smi_1629	PF16127	smi_1629
smi_1630	PF00013	KH domain
smi_1630	PF01966	HD domain
smi_1630	PF12072	smi_1630
smi_1631	PF07693	smi_1631
smi_1632	PF05636	HIGH Nucleotidyl Transferase
smi_1633	PF13649	Methyltransferase domain
smi_1634	PF02410	Oligomerisation domain
smi_1635	PF00857	Isochorismatase family
smi_1636	PF01966	HD domain
smi_1637	PF01467	Cytidylyltransferase
smi_1638	PF01985	CRS1 / YhbY (CRM) domain
smi_1639	PF01926	50S ribosome-binding GTPase
smi_1640	PF13419	Haloacid dehalogenase-like hydrolase
smi_1641	PF01544	CorA-like Mg2+ transporter protein
smi_1642	PF00924	Mechanosensitive ion channel
smi_1643	PF00375	Sodium:dicarboxylate symporter family
smi_1644	PF06081	smi_1644
smi_1644	PF11728	DUF939 C-terminal domain
smi_1645	PF17000	smi_1645
smi_1646	PF16996	smi_1646
smi_1648	PF00534	Glycosyl transferases group 1
smi_1649	PF01043	SecA preprotein cross-linking domain
smi_1649	PF07516	SecA Wing and Scaffold domain
smi_1649	PF07517	SecA DEAD-like domain
smi_1650	PF15432	smi_1650
smi_1651	PF16929	smi_1651
smi_1652	PF16993	smi_1652
smi_1653	PF00344	SecY translocase
smi_1654	PF00535	Glycosyl transferase family 2
smi_1655	PF01501	Glycosyl transferase family 8
smi_1656	PF01501	Glycosyl transferase family 8
smi_1657	PF00535	Glycosyl transferase family 2
smi_1658	PF01501	Glycosyl transferase family 8
smi_1658	PF08759	Domain of unknown function (DUF1792)
smi_1660	PF00132	Bacterial transferase hexapeptide (six repeats)
smi_1661	PF00535	Glycosyl transferase family 2
smi_1661	PF01501	Glycosyl transferase family 8
smi_1662	PF00746	smi_1662
smi_1663	PF00009	Elongation factor Tu GTP binding domain
smi_1663	PF03144	Elongation factor Tu domain 2
smi_1663	PF16658	smi_1663
smi_1665	PF02686	Glu-tRNAGln amidotransferase C subunit
smi_1666	PF01425	Amidase
smi_1667	PF02637	GatB domain
smi_1667	PF02934	GatB/GatE catalytic domain
smi_1669	PF01132	Elongation factor P (EF-P) OB domain
smi_1669	PF08207	Elongation factor P (EF-P) KOW-like domain
smi_1669	PF09285	Elongation factor P, C-terminal
smi_1670	PF03780	smi_1670
smi_1671	PF01029	NusB family
smi_1672	PF02517	CAAX protease self-immunity
smi_1674	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
smi_1675	PF01039	Carboxyl transferase domain
smi_1676	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
smi_1676	PF02785	Biotin carboxylase C-terminal domain
smi_1676	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
smi_1677	PF07977	FabA-like domain
smi_1678	PF00364	Biotin-requiring enzyme
smi_1679	PF00109	Beta-ketoacyl synthase, N-terminal domain
smi_1679	PF02801	Beta-ketoacyl synthase, C-terminal domain
smi_1680	PF13561	Enoyl-(Acyl carrier protein) reductase
smi_1681	PF00698	Acyl transferase domain
smi_1682	PF03060	Nitronate monooxygenase
smi_1683	PF00550	Phosphopantetheine attachment site
smi_1684	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
smi_1684	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
smi_1685	PF01047	MarR family
smi_1686	PF00378	Enoyl-CoA hydratase/isomerase family
smi_1687	PF00696	Amino acid kinase family
smi_1687	PF13840	ACT domain
smi_1688	PF06115	smi_1688
smi_1689	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
smi_1689	PF02403	Seryl-tRNA synthetase N-terminal domain
smi_1690	PF01610	smi_1690
smi_1691	PF00392	Bacterial regulatory proteins, gntR family
smi_1692	PF13613	smi_1692
smi_1693	PF13359	smi_1693
smi_1695	PF00877	NlpC/P60 family
smi_1695	PF13702	Lysozyme-like
smi_1696	PF12642	Conjugative transposon protein TcpC
smi_1697	PF12833	Helix-turn-helix domain
smi_1698	PF00005	ABC transporter
smi_1698	PF00664	ABC transporter transmembrane region
smi_1703	PF01872	RibD C-terminal domain
smi_1704	PF01636	Phosphotransferase enzyme family
smi_1704	PF13523	Acetyltransferase (GNAT) domain
smi_1705	PF00583	Acetyltransferase (GNAT) family
smi_1706	PF13280	smi_1706
smi_1707	PF08279	HTH domain
smi_1708	PF01636	Phosphotransferase enzyme family
smi_1709	PF00583	Acetyltransferase (GNAT) family
smi_1710	PF04439	Streptomycin adenylyltransferase
smi_1711	PF08241	Methyltransferase domain
smi_1712	PF01909	Nucleotidyltransferase domain
smi_1713	PF00239	Resolvase, N terminal domain
smi_1713	PF07508	Recombinase
smi_1713	PF13408	Recombinase zinc beta ribbon domain
smi_1715	PF00239	Resolvase, N terminal domain
smi_1715	PF07508	Recombinase
smi_1715	PF13408	Recombinase zinc beta ribbon domain
smi_1718	PF00005	ABC transporter
smi_1719	PF00440	Bacterial regulatory proteins, tetR family
smi_1720	PF03595	Voltage-dependent anion channel
smi_1721	PF02627	Carboxymuconolactone decarboxylase family
smi_1722	PF01235	smi_1722
smi_1727	PF08378	smi_1727
smi_1728	PF01025	GrpE
smi_1729	PF13181	Tetratricopeptide repeat
smi_1730	PF00012	Hsp70 protein
smi_1732	PF12844	Helix-turn-helix domain
smi_1733	PF00488	MutS domain V
smi_1733	PF01713	Smr domain
smi_1734	PF02674	smi_1734
smi_1735	PF05164	Cell division protein ZapA
smi_1736	PF01351	Ribonuclease HII
smi_1736	PF11858	Domain of unknown function (DUF3378)
smi_1737	PF00717	Peptidase S24-like
smi_1738	PF13538	UvrD-like helicase C-terminal domain
smi_1738	PF13604	AAA domain
smi_1738	PF14490	Helix-hairpin-helix containing domain
smi_1739	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
smi_1739	PF05697	Bacterial trigger factor protein (TF)
smi_1739	PF05698	Bacterial trigger factor protein (TF) C-terminus
smi_1740	PF08713	DNA alkylation repair enzyme
smi_1741	PF00072	Response regulator receiver domain
smi_1741	PF00196	Bacterial regulatory proteins, luxR family
smi_1742	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1742	PF07730	Histidine kinase
smi_1743	PF09922	Cell wall-active antibiotics response protein (DUF2154)
smi_1744	PF01070	FMN-dependent dehydrogenase
smi_1745	PF00288	GHMP kinases N terminal domain
smi_1745	PF08544	GHMP kinases C terminal
smi_1746	PF00288	GHMP kinases N terminal domain
smi_1746	PF08544	GHMP kinases C terminal
smi_1747	PF00288	GHMP kinases N terminal domain
smi_1747	PF08544	GHMP kinases C terminal
smi_1748	PF01473	Putative cell wall binding repeat
smi_1749	PF00072	Response regulator receiver domain
smi_1749	PF00486	Transcriptional regulatory protein, C terminal
smi_1750	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
smi_1750	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
smi_1752	PF01170	Putative RNA methylase family UPF0020
smi_1752	PF02926	THUMP domain
smi_1754	PF05103	DivIVA protein
smi_1755	PF06908	Protein of unknown function (DUF1273)
smi_1756	PF03838	Recombination protein U
smi_1757	PF00905	Penicillin binding protein transpeptidase domain
smi_1757	PF00912	Transglycosylase
smi_1758	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
smi_1759	PF03275	UDP-galactopyranose mutase
smi_1759	PF13450	NAD(P)-binding Rossmann-like domain
smi_1761	PF00128	Alpha amylase, catalytic domain
smi_1761	PF16657	smi_1761
smi_1762	PF08903	Domain of unknown function (DUF1846)
smi_1763	PF02664	S-Ribosylhomocysteinase (LuxS)
smi_1764	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
smi_1764	PF08388	smi_1764
smi_1765	PF00004	ATPase family associated with various cellular activities (AAA)
smi_1765	PF07724	AAA domain (Cdc48 subfamily)
smi_1765	PF10431	C-terminal, D2-small domain, of ClpB protein
smi_1766	PF00953	Glycosyl transferase family 4
smi_1766	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
smi_1767	PF00905	Penicillin binding protein transpeptidase domain
smi_1767	PF03717	Penicillin-binding Protein dimerisation domain
smi_1767	PF03793	PASTA domain
smi_1769	PF01795	MraW methylase family
smi_1770	PF01381	Helix-turn-helix
smi_1771	PF11683	smi_1771
smi_1773	PF11683	smi_1773
smi_1774	PF00255	Glutathione peroxidase
smi_1777	PF00817	impB/mucB/samB family
smi_1777	PF11798	IMS family HHH motif
smi_1777	PF11799	impB/mucB/samB family C-terminal domain
smi_1778	PF00717	Peptidase S24-like
smi_1778	PF01381	Helix-turn-helix
smi_1779	PF00854	POT family
smi_1780	PF13173	AAA domain
smi_1780	PF13635	smi_1780
smi_1783	PF01638	HxlR-like helix-turn-helix
smi_1784	PF07690	Major Facilitator Superfamily
smi_1789	PF01580	FtsK/SpoIIIE family
smi_1791	PF00149	Calcineurin-like phosphoesterase
smi_1792	PF00149	Calcineurin-like phosphoesterase
smi_1794	PF12728	Helix-turn-helix domain
smi_1795	PF00589	Phage integrase family
smi_1796	PF00380	Ribosomal protein S9/S16
smi_1797	PF00572	Ribosomal protein L13
smi_1798	PF13936	Helix-turn-helix domain
smi_1799	PF12698	ABC-2 family transporter protein
smi_1800	PF00005	ABC transporter
smi_1800	PF13732	smi_1800
smi_1801	PF01588	Putative tRNA binding domain
smi_1801	PF03147	Ferredoxin-fold anticodon binding domain
smi_1801	PF03483	B3/4 domain
smi_1801	PF03484	tRNA synthetase B5 domain
smi_1802	PF13673	Acetyltransferase (GNAT) domain
smi_1803	PF01409	tRNA synthetases class II core domain (F)
smi_1803	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
smi_1804	PF13302	Acetyltransferase (GNAT) domain
smi_1806	PF01569	PAP2 superfamily
smi_1807	PF12822	Protein of unknown function (DUF3816)
smi_1808	PF00588	SpoU rRNA Methylase family
smi_1809	PF02361	Cobalt transport protein
smi_1810	PF00005	ABC transporter
smi_1810	PF12558	smi_1810
smi_1811	PF07155	ECF-type riboflavin transporter, S component
smi_1812	PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
smi_1813	PF02080	TrkA-C domain
smi_1813	PF02254	TrkA-N domain
smi_1814	PF02386	Cation transport protein
smi_1815	PF01228	Glycine radical
smi_1815	PF02901	Pyruvate formate lyase
smi_1816	PF00817	impB/mucB/samB family
smi_1816	PF11798	IMS family HHH motif
smi_1816	PF11799	impB/mucB/samB family C-terminal domain
smi_1817	PF02673	smi_1817
smi_1818	PF09972	smi_1818
smi_1819	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1819	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1820	PF00005	ABC transporter
smi_1822	PF00291	Pyridoxal-phosphate dependent enzyme
smi_1822	PF00585	C-terminal regulatory domain of Threonine dehydratase
smi_1823	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
smi_1823	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
smi_1824	PF01842	ACT domain
smi_1824	PF10369	Small subunit of acetolactate synthase
smi_1825	PF00205	Thiamine pyrophosphate enzyme, central domain
smi_1825	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
smi_1825	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
smi_1826	PF02734	DAK2 domain
smi_1826	PF13684	Dihydroxyacetone kinase family
smi_1827	PF03780	smi_1827
smi_1828	PF00830	Ribosomal L28 family
smi_1829	PF13936	Helix-turn-helix domain
smi_1830	PF13936	Helix-turn-helix domain
smi_1832	PF04397	LytTr DNA-binding domain
smi_1833	PF01569	PAP2 superfamily
smi_1834	PF00005	ABC transporter
smi_1834	PF00664	ABC transporter transmembrane region
smi_1835	PF00005	ABC transporter
smi_1835	PF00664	ABC transporter transmembrane region
smi_1836	PF12802	MarR family
smi_1837	PF01709	Transcriptional regulator
smi_1838	PF01554	MatE
smi_1839	PF00154	recA bacterial DNA recombination protein
smi_1840	PF00994	Probable molybdopterin binding domain
smi_1840	PF02464	Competence-damaged protein
smi_1841	PF03816	Cell envelope-related transcriptional attenuator domain
smi_1842	PF00583	Acetyltransferase (GNAT) family
smi_1843	PF02367	Uncharacterised P-loop hydrolase UPF0079
smi_1845	PF00334	Nucleoside diphosphate kinase
smi_1846	PF00623	RNA polymerase Rpb1, domain 2
smi_1846	PF04983	RNA polymerase Rpb1, domain 3
smi_1846	PF04997	RNA polymerase Rpb1, domain 1
smi_1846	PF04998	RNA polymerase Rpb1, domain 5
smi_1846	PF05000	RNA polymerase Rpb1, domain 4
smi_1847	PF00562	RNA polymerase Rpb2, domain 6
smi_1847	PF04560	RNA polymerase Rpb2, domain 7
smi_1847	PF04561	RNA polymerase Rpb2, domain 2
smi_1847	PF04563	RNA polymerase beta subunit
smi_1847	PF04565	RNA polymerase Rpb2, domain 3
smi_1847	PF10385	RNA polymerase beta subunit external 1 domain
smi_1848	PF00128	Alpha amylase, catalytic domain
smi_1848	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
smi_1848	PF03714	Bacterial pullanase-associated domain
smi_1848	PF04650	smi_1848
smi_1849	PF00296	Luciferase-like monooxygenase
smi_1850	PF01380	SIS domain
smi_1850	PF13522	Glutamine amidotransferase domain
smi_1851	PF00232	Glycosyl hydrolase family 1
smi_1852	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
smi_1852	PF03129	Anticodon binding domain
smi_1852	PF04073	Aminoacyl-tRNA editing domain
smi_1853	PF02163	Peptidase family M50
smi_1854	PF01148	Cytidylyltransferase family
smi_1855	PF01255	Putative undecaprenyl diphosphate synthase
smi_1856	PF13936	Helix-turn-helix domain
smi_1857	PF13936	Helix-turn-helix domain
smi_1859	PF06042	Bacterial protein of unknown function (DUF925)
smi_1860	PF05491	Holliday junction DNA helicase ruvB C-terminus
smi_1860	PF05496	Holliday junction DNA helicase ruvB N-terminus
smi_1861	PF13955	Toxin Fst, type I toxin-antitoxin system
smi_1862	PF13955	Toxin Fst, type I toxin-antitoxin system
smi_1863	PF13936	Helix-turn-helix domain
smi_1866	PF13673	Acetyltransferase (GNAT) domain
smi_1867	PF13302	Acetyltransferase (GNAT) domain
smi_1868	PF11457	smi_1868
smi_1869	PF04397	LytTr DNA-binding domain
smi_1870	PF01061	smi_1870
smi_1871	PF00005	ABC transporter
smi_1872	PF00133	tRNA synthetases class I (I, L, M and V)
smi_1872	PF08264	Anticodon-binding domain of tRNA
smi_1872	PF09334	tRNA synthetases class I (M)
smi_1872	PF13603	Leucyl-tRNA synthetase, Domain 2
smi_1873	PF00300	Histidine phosphatase superfamily (branch 1)
smi_1875	PF01473	Putative cell wall binding repeat
smi_1876	PF05167	Uncharacterised ACR (DUF711)
smi_1877	PF13740	ACT domain
smi_1878	PF01196	Ribosomal protein L17
smi_1879	PF01000	RNA polymerase Rpb3/RpoA insert domain
smi_1879	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
smi_1879	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
smi_1880	PF00411	Ribosomal protein S11
smi_1881	PF00416	Ribosomal protein S13/S18
smi_1882	PF00444	Ribosomal protein L36
smi_1883	PF01176	Translation initiation factor 1A / IF-1
smi_1884	PF00406	Adenylate kinase
smi_1885	PF00344	SecY translocase
smi_1886	PF00828	Ribosomal protein L18e/L15
smi_1887	PF00327	Ribosomal protein L30p/L7e
smi_1888	PF00333	Ribosomal protein S5, N-terminal domain
smi_1888	PF03719	Ribosomal protein S5, C-terminal domain
smi_1889	PF00861	Ribosomal L18p/L5e family
smi_1890	PF00347	Ribosomal protein L6
smi_1891	PF00410	Ribosomal protein S8
smi_1892	PF00253	Ribosomal protein S14p/S29e
smi_1893	PF00281	Ribosomal protein L5
smi_1893	PF00673	ribosomal L5P family C-terminus
smi_1894	PF00467	KOW motif
smi_1894	PF17136	smi_1894
smi_1895	PF00238	Ribosomal protein L14p/L23e
smi_1896	PF00366	Ribosomal protein S17
smi_1897	PF00831	Ribosomal L29 protein
smi_1898	PF00252	Ribosomal protein L16p/L10e
smi_1899	PF00189	Ribosomal protein S3, C-terminal domain
smi_1899	PF07650	KH domain
smi_1900	PF00237	Ribosomal protein L22p/L17e
smi_1901	PF00203	Ribosomal protein S19
smi_1902	PF00181	Ribosomal Proteins L2, RNA binding domain
smi_1902	PF03947	Ribosomal Proteins L2, C-terminal domain
smi_1903	PF00276	Ribosomal protein L23
smi_1904	PF00573	Ribosomal protein L4/L1 family
smi_1905	PF00297	Ribosomal protein L3
smi_1906	PF00338	Ribosomal protein S10p/S20e
smi_1907	PF13936	Helix-turn-helix domain
smi_1908	PF00485	Phosphoribulokinase / Uridine kinase family
smi_1909	PF13353	4Fe-4S single cluster domain
smi_1910	PF13302	Acetyltransferase (GNAT) domain
smi_1912	PF03477	ATP cone domain
smi_1912	PF13597	Anaerobic ribonucleoside-triphosphate reductase
smi_1915	PF13091	PLD-like domain
smi_1915	PF13396	smi_1915
smi_1916	PF12182	Bacterial lipoprotein
smi_1917	PF08245	Mur ligase middle domain
smi_1918	PF06949	smi_1918
smi_1919	PF03652	Uncharacterised protein family (UPF0081)
smi_1920	PF06135	smi_1920
smi_1922	PF03960	ArsC family
smi_1923	PF00122	E1-E2 ATPase
smi_1923	PF00689	Cation transporting ATPase, C-terminus
smi_1923	PF00690	Cation transporter/ATPase, N-terminus
smi_1923	PF00702	haloacid dehalogenase-like hydrolase
smi_1924	PF00557	Metallopeptidase family M24
smi_1924	PF01321	Creatinase/Prolidase N-terminal domain
smi_1925	PF00005	ABC transporter
smi_1926	PF01544	CorA-like Mg2+ transporter protein
smi_1927	PF06570	smi_1927
smi_1928	PF02016	LD-carboxypeptidase
smi_1929	PF03352	Methyladenine glycosylase
smi_1930	PF01330	RuvA N terminal domain
smi_1930	PF07499	RuvA, C-terminal domain
smi_1930	PF14520	Helix-hairpin-helix domain
smi_1931	PF01119	DNA mismatch repair protein, C-terminal domain
smi_1931	PF08676	MutL C terminal dimerisation domain
smi_1931	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1933	PF04397	LytTr DNA-binding domain
smi_1934	PF11457	smi_1934
smi_1935	PF07972	NrdI Flavodoxin like
smi_1937	PF00072	Response regulator receiver domain
smi_1937	PF12833	Helix-turn-helix domain
smi_1938	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
smi_1938	PF06580	smi_1938
smi_1939	PF04854	smi_1939
smi_1940	PF09605	smi_1940
smi_1941	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1942	PF00005	ABC transporter
smi_1942	PF09383	NIL domain
smi_1943	PF01546	Peptidase family M20/M25/M40
smi_1943	PF07687	Peptidase dimerisation domain
smi_1944	PF03180	NLPA lipoprotein
smi_1945	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1946	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1947	PF05437	smi_1947
smi_1948	PF03591	smi_1948
smi_1949	PF02517	CAAX protease self-immunity
smi_1950	PF01381	Helix-turn-helix
smi_1951	PF00814	Glycoprotease family
smi_1952	PF13673	Acetyltransferase (GNAT) domain
smi_1953	PF00814	Glycoprotease family
smi_1954	PF13936	Helix-turn-helix domain
smi_1959	PF07288	Protein of unknown function (DUF1447)
smi_1960	PF00753	Metallo-beta-lactamase superfamily
smi_1960	PF07521	RNA-metabolising metallo-beta-lactamase
smi_1961	PF01134	Glucose inhibited division protein A
smi_1961	PF13932	GidA associated domain 3
smi_1962	PF00293	NUDIX domain
smi_1963	PF03054	tRNA methyl transferase
smi_1964	PF13936	Helix-turn-helix domain
smi_1967	PF00206	Lyase
smi_1967	PF14698	Argininosuccinate lyase C-terminal
smi_1968	PF00764	Arginosuccinate synthase
smi_1969	PF00497	Bacterial extracellular solute-binding proteins, family 3
smi_1970	PF00005	ABC transporter
smi_1973	PF00005	ABC transporter
smi_1977	PF12844	Helix-turn-helix domain
smi_1978	PF01476	LysM domain
smi_1979	PF01842	ACT domain
smi_1979	PF03315	Serine dehydratase beta chain
smi_1980	PF03313	smi_1980
smi_1981	PF13419	Haloacid dehalogenase-like hydrolase
smi_1982	PF02719	Polysaccharide biosynthesis protein
smi_1982	PF13727	CoA-binding domain
smi_1983	PF00535	Glycosyl transferase family 2
smi_1984	PF07690	Major Facilitator Superfamily
smi_1985	PF03551	Transcriptional regulator PadR-like family
smi_1986	PF08006	smi_1986
smi_1987	PF13349	smi_1987
smi_1989	PF14132	smi_1989
smi_1990	PF00581	Rhodanese-like domain
smi_1990	PF12368	smi_1990
smi_1991	PF08951	Enterocin A Immunity
smi_1992	PF02517	CAAX protease self-immunity
smi_1993	PF12010	smi_1993
smi_1994	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1995	PF00528	Binding-protein-dependent transport system inner membrane component
smi_1997	PF00480	ROK family
smi_1998	PF01074	Glycosyl hydrolases family 38 N-terminal domain
smi_1998	PF09261	Alpha mannosidase, middle domain
smi_1999	PF06824	Protein of unknown function (DUF1237)
smi_2005	PF03288	Poxvirus D5 protein-like
smi_2013	PF09669	smi_2013
smi_2015	PF01381	Helix-turn-helix
smi_2016	PF04326	Divergent AAA domain
smi_2016	PF13749	ATP-dependent DNA helicase recG C-terminal
smi_2017	PF00589	Phage integrase family
smi_2017	PF14659	Phage integrase, N-terminal SAM-like domain
smi_2018	PF07971	Glycosyl hydrolase family 92
smi_2019	PF01120	Alpha-L-fucosidase
smi_2020	PF07532	smi_2020
smi_2021	PF00703	Glycosyl hydrolases family 2
smi_2021	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
smi_2021	PF02837	Glycosyl hydrolases family 2, sugar binding domain
smi_2021	PF16355	smi_2021
smi_2022	PF01145	SPFH domain / Band 7 family
smi_2023	PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase)
smi_2024	PF01297	Periplasmic solute binding protein family
smi_2024	PF09223	YodA lipocalin-like domain
smi_2025	PF00950	smi_2025
smi_2026	PF00005	ABC transporter
smi_2027	PF01047	MarR family
smi_2028	PF04914	DltD C-terminal region
smi_2028	PF04915	DltD N-terminal region
smi_2028	PF04918	DltD central region
smi_2029	PF00550	Phosphopantetheine attachment site
smi_2031	PF00501	AMP-binding enzyme
smi_2031	PF13193	AMP-binding enzyme C-terminal domain
smi_2032	PF07690	Major Facilitator Superfamily
smi_2033	PF00230	Major intrinsic protein
smi_2034	PF01266	FAD dependent oxidoreductase
smi_2034	PF16901	smi_2034
smi_2035	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
smi_2035	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
smi_2036	PF05043	Mga helix-turn-helix domain
smi_2037	PF01430	Hsp33 protein
smi_2038	PF01207	Dihydrouridine synthase (Dus)
smi_2039	PF06912	smi_2039
smi_2042	PF00293	NUDIX domain
smi_2043	PF04973	smi_2043
smi_2044	PF01467	Cytidylyltransferase
smi_2044	PF13521	AAA domain
smi_2045	PF00004	ATPase family associated with various cellular activities (AAA)
smi_2045	PF02861	Clp amino terminal domain
smi_2045	PF07724	AAA domain (Cdc48 subfamily)
smi_2045	PF10431	C-terminal, D2-small domain, of ClpB protein
smi_2046	PF05848	Firmicute transcriptional repressor of class III stress genes (CtsR)
smi_2047	PF00005	ABC transporter
smi_2048	PF09084	NMT1/THI5 like
smi_2049	PF00528	Binding-protein-dependent transport system inner membrane component
smi_2050	PF01910	Domain of unknown function DUF77
smi_2051	PF01473	Putative cell wall binding repeat
smi_2051	PF05257	CHAP domain
smi_2051	PF08460	Bacterial SH3 domain
smi_2052	PF06257	Protein of unknown function (DUF1021)
smi_2053	PF00772	DnaB-like helicase N terminal domain
smi_2053	PF03796	DnaB-like helicase C terminal domain
smi_2054	PF01281	Ribosomal protein L9, N-terminal domain
smi_2054	PF03948	Ribosomal protein L9, C-terminal domain
smi_2055	PF01368	DHH family
smi_2055	PF02272	DHHA1 domain
smi_2056	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
smi_2056	PF16321	smi_2056
smi_2057	PF00156	Phosphoribosyl transferase domain
smi_2058	PF00271	Helicase conserved C-terminal domain
smi_2058	PF04851	Type III restriction enzyme, res subunit
smi_2059	PF01205	Uncharacterized protein family UPF0029
smi_2059	PF09186	Domain of unknown function (DUF1949)
smi_2060	PF00291	Pyridoxal-phosphate dependent enzyme
smi_2061	PF00889	Elongation factor TS
smi_2062	PF00318	Ribosomal protein S2
smi_2063	PF05257	CHAP domain
smi_2064	PF04093	smi_2064
smi_2065	PF04085	rod shape-determining protein MreC
smi_2066	PF02361	Cobalt transport protein
smi_2067	PF00005	ABC transporter
smi_2068	PF00005	ABC transporter
smi_2069	PF01066	CDP-alcohol phosphatidyltransferase
smi_2070	PF13413	Helix-turn-helix domain
smi_2071	PF00675	Insulinase (Peptidase family M16)
smi_2071	PF05193	Peptidase M16 inactive domain
smi_2072	PF05193	Peptidase M16 inactive domain
smi_2073	PF13275	S4 domain
smi_2074	PF13175	AAA ATPase domain
smi_2075	PF00478	IMP dehydrogenase / GMP reductase domain
smi_2075	PF00571	CBS domain
smi_2076	PF00579	tRNA synthetases class I (W and Y)
smi_2077	PF00005	ABC transporter
smi_2077	PF12848	ABC transporter
smi_2078	PF09586	smi_2078
smi_2079	PF12698	ABC-2 family transporter protein
smi_2080	PF00440	Bacterial regulatory proteins, tetR family
smi_2083	PF00072	Response regulator receiver domain
smi_2083	PF04397	LytTr DNA-binding domain
smi_2084	PF14501	GHKL domain
smi_2085	PF03047	smi_2085
smi_2087	PF02590	Predicted SPOUT methyltransferase
smi_2088	PF13180	PDZ domain
smi_2088	PF13365	Trypsin-like peptidase domain
smi_2089	PF02195	ParB-like nuclease domain