locus-tag	class	description
GOM48_RS00010	COG0592	DNA-directed DNA polymerase activity
GOM48_RS00020	COG0012	GTP binding
GOM48_RS00030	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GOM48_RS00035	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
GOM48_RS00055	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
GOM48_RS00060	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOM48_RS00130	COG0756	dUTP diphosphatase activity
GOM48_RS00140	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
GOM48_RS00150	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GOM48_RS00155	COG1832	CoA-binding protein
GOM48_RS00160	COG2855	membrane
GOM48_RS00165	COG0436	Aminotransferase
GOM48_RS00180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GOM48_RS00225	COG2274	protein secretion by the type I secretion system
GOM48_RS00230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM48_RS00240	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GOM48_RS00250	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GOM48_RS00255	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GOM48_RS00270	COG0151	Belongs to the GarS family
GOM48_RS00275	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
GOM48_RS00280	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
GOM48_RS00295	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
GOM48_RS00300	COG2249	NAD(P)H dehydrogenase (quinone) activity
GOM48_RS00325	COG3064	Membrane
GOM48_RS00325	COG3525	Glycosyl hydrolase, family 20, catalytic domain
GOM48_RS00325	COG3583	domain protein
GOM48_RS00340	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GOM48_RS00345	COG3715	PTS system
GOM48_RS00350	COG3716	PTS system mannose fructose sorbose family IID component
GOM48_RS00360	COG2222	sugar isomerase
GOM48_RS00365	COG3684	Belongs to the aldolase LacD family
GOM48_RS00390	COG0666	response to abiotic stimulus
GOM48_RS00415	COG2357	RelA SpoT domain protein
GOM48_RS00420	COG1937	Protein conserved in bacteria
GOM48_RS00435	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM48_RS00435	COG0425	Belongs to the sulfur carrier protein TusA family
GOM48_RS00440	COG0446	pyridine nucleotide-disulphide oxidoreductase
GOM48_RS00445	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM48_RS00445	COG0425	Belongs to the sulfur carrier protein TusA family
GOM48_RS00450	COG0110	maltose O-acetyltransferase activity
GOM48_RS00465	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GOM48_RS00480	COG0745	RESPONSE REGULATOR receiver
GOM48_RS00485	COG5002	protein histidine kinase activity
GOM48_RS00515	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GOM48_RS00530	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GOM48_RS00545	COG2151	metal-sulfur cluster biosynthetic enzyme
GOM48_RS00565	COG0124	histidyl-tRNA synthetase
GOM48_RS00570	COG1476	TRANSCRIPTIONal
GOM48_RS00610	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
GOM48_RS00630	COG1609	Transcriptional regulator
GOM48_RS00635	COG5521	maltodextrose utilization protein MalA
GOM48_RS00640	COG3833	ABC-type maltose transport systems, permease component
GOM48_RS00645	COG1175	transmembrane transport
GOM48_RS00650	COG2182	Extracellular solute-binding protein
GOM48_RS00655	COG1640	4-alpha-glucanotransferase
GOM48_RS00660	COG0058	SHG alpha-glucan phosphorylase activity
GOM48_RS00665	COG2226	methyltransferase
GOM48_RS00675	COG2217	Heavy metal translocating P-type atpase
GOM48_RS00685	COG4499	WXG100 protein secretion system (Wss), protein YukC
GOM48_RS00685	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GOM48_RS00690	COG0697	spore germination
GOM48_RS00705	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GOM48_RS00720	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
GOM48_RS00725	COG1518	maintenance of DNA repeat elements
GOM48_RS00730	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
GOM48_RS00735	COG1210	Utp--glucose-1-phosphate uridylyltransferase
GOM48_RS00745	COG1132	(ABC) transporter
GOM48_RS00750	COG1132	(ABC) transporter
GOM48_RS00755	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
GOM48_RS00760	COG0166	Belongs to the GPI family
GOM48_RS00870	COG0534	Mate efflux family protein
GOM48_RS00895	COG3759	membrane
GOM48_RS00925	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
GOM48_RS00930	COG1459	type II secretion system
GOM48_RS00935	COG4537	Required for transformation and DNA binding
GOM48_RS00980	COG0706	membrane insertase activity
GOM48_RS00985	COG1847	R3H domain protein
GOM48_RS00995	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
GOM48_RS01005	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GOM48_RS01030	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GOM48_RS01035	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GOM48_RS01130	COG1523	belongs to the glycosyl hydrolase 13 family
GOM48_RS01150	COG0802	atpase or kinase
GOM48_RS01160	COG1316	TRANSCRIPTIONal
GOM48_RS01180	COG0534	Mate efflux family protein
GOM48_RS01225	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GOM48_RS01235	COG1461	Dihydroxyacetone kinase
GOM48_RS01250	COG1131	(ABC) transporter
GOM48_RS01260	COG4585	Histidine kinase
GOM48_RS01265	COG2197	response regulator
GOM48_RS01285	COG0028	Belongs to the TPP enzyme family
GOM48_RS01290	COG0440	acetolactate synthase activity
GOM48_RS01300	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
GOM48_RS01320	COG0765	amino acid transport
GOM48_RS01335	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GOM48_RS01340	COG1882	Formate acetyltransferase
GOM48_RS01385	COG0366	Alpha amylase catalytic
GOM48_RS01390	COG4166	transmembrane transport
GOM48_RS01395	COG4166	transmembrane transport
GOM48_RS01405	COG4464	protein tyrosine phosphatase activity
GOM48_RS01410	COG3944	biosynthesis protein
GOM48_RS01435	COG3475	LICD family
GOM48_RS01440	COG0438	transferase activity, transferring glycosyl groups
GOM48_RS01445	COG0463	Glycosyl transferase, family 2
GOM48_RS01445	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
GOM48_RS01450	COG1442	glycosyl transferase family 8
GOM48_RS01450	COG1216	Glycosyl transferase, family 2
GOM48_RS01465	COG3274	enterobacterial common antigen metabolic process
GOM48_RS01470	COG0562	UDP-galactopyranose mutase
GOM48_RS01475	COG4166	transmembrane transport
GOM48_RS01480	COG0366	Alpha amylase catalytic
GOM48_RS01480	COG0366	Alpha amylase catalytic
GOM48_RS01515	COG0116	Belongs to the methyltransferase superfamily
GOM48_RS01525	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
GOM48_RS01530	COG0745	RESPONSE REGULATOR receiver
GOM48_RS01535	COG0366	Alpha amylase catalytic
GOM48_RS01535	COG5263	repeat protein
GOM48_RS01540	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
GOM48_RS01565	COG4585	Histidine kinase
GOM48_RS01570	COG2197	response regulator
GOM48_RS01585	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GOM48_RS01590	COG0681	Belongs to the peptidase S26 family
GOM48_RS01615	COG1115	amino acid carrier protein
GOM48_RS01640	COG0527	aspartate kinase activity
GOM48_RS01645	COG1024	Enoyl-CoA hydratase
GOM48_RS01650	COG1846	Transcriptional regulator
GOM48_RS01660	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GOM48_RS01670	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
GOM48_RS01675	COG1028	Short-chain dehydrogenase reductase Sdr
GOM48_RS01680	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
GOM48_RS01695	COG0439	Biotin carboxylase
GOM48_RS01700	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
GOM48_RS01735	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GOM48_RS01755	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GOM48_RS01765	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
GOM48_RS01770	COG0668	transmembrane transport
GOM48_RS01780	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
GOM48_RS01785	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
GOM48_RS01790	COG1534	Rna-binding protein
GOM48_RS01795	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
GOM48_RS01800	COG1713	HD superfamily hydrolase involved in NAD metabolism
GOM48_RS01805	COG0799	negative regulation of ribosome biogenesis
GOM48_RS01810	COG2226	methyltransferase
GOM48_RS01825	COG4115	mRNA cleavage
GOM48_RS01855	COG0194	GDP metabolic process
GOM48_RS01865	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GOM48_RS01875	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
GOM48_RS01875	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
GOM48_RS01880	COG0631	protein serine/threonine phosphatase activity
GOM48_RS01885	COG2815	serine threonine protein kinase
GOM48_RS01885	COG0515	serine threonine protein kinase
GOM48_RS01900	COG3425	synthase
GOM48_RS01910	COG1609	Transcriptional regulator
GOM48_RS01915	COG1621	beta-fructofuranosidase activity
GOM48_RS01920	COG2190	(PTS) system
GOM48_RS01920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GOM48_RS01920	COG1263	PTS System
GOM48_RS01925	COG1940	carbohydrate kinase activity
GOM48_RS01970	COG4679	PFAM Phage derived protein Gp49-like (DUF891)
GOM48_RS01975	COG3620	sequence-specific DNA binding
GOM48_RS01980	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GOM48_RS01995	COG1045	serine acetyltransferase
GOM48_RS02015	COG0215	cysteine-tRNA ligase activity
GOM48_RS02020	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
GOM48_RS02030	COG3842	ATPase activity
GOM48_RS02055	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
GOM48_RS02075	COG3590	peptidase
GOM48_RS02100	COG0745	RESPONSE REGULATOR receiver
GOM48_RS02110	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GOM48_RS02130	COG1959	2 iron, 2 sulfur cluster binding
GOM48_RS02145	COG0346	lactoylglutathione lyase activity
GOM48_RS02160	COG1940	carbohydrate kinase activity
GOM48_RS02160	COG1846	Transcriptional regulator
GOM48_RS02180	COG0765	amino acid transport
GOM48_RS02185	COG0765	amino acid transport
GOM48_RS02190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS02200	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
GOM48_RS02200	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
GOM48_RS02215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GOM48_RS02215	COG5549	protein import
GOM48_RS02220	COG0322	excinuclease ABC activity
GOM48_RS02255	COG1573	uracil-dna glycosylase
GOM48_RS02265	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM48_RS02270	COG1114	Component of the transport system for branched-chain amino acids
GOM48_RS02275	COG1363	Peptidase, m42
GOM48_RS02305	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GOM48_RS02315	COG3935	DnaD domain protein
GOM48_RS02340	COG2824	Alkylphosphonate utilization operon protein PhnA
GOM48_RS02360	COG0351	phosphomethylpyrimidine kinase
GOM48_RS02365	COG4720	Psort location CytoplasmicMembrane, score
GOM48_RS02370	COG0006	proline dipeptidase activity
GOM48_RS02375	COG3442	glutamine amidotransferase
GOM48_RS02380	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GOM48_RS02390	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GOM48_RS02395	COG0513	Belongs to the DEAD box helicase family
GOM48_RS02400	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
GOM48_RS02405	COG1335	isochorismatase
GOM48_RS02415	COG0577	efflux transmembrane transporter activity
GOM48_RS02420	COG1136	(ABC) transporter
GOM48_RS02425	COG0577	efflux transmembrane transporter activity
GOM48_RS02430	COG0745	RESPONSE REGULATOR receiver
GOM48_RS02435	COG5002	protein histidine kinase activity
GOM48_RS02440	COG0191	fructose-bisphosphate aldolase activity
GOM48_RS02460	COG4555	ABC transporter
GOM48_RS02490	COG0583	DNA-binding transcription factor activity
GOM48_RS02510	COG1187	pseudouridine synthase activity
GOM48_RS02515	COG1217	gtp-binding protein TYPA
GOM48_RS02525	COG2233	PERMEase
GOM48_RS02540	COG0708	Exodeoxyribonuclease III
GOM48_RS02555	COG1132	(ABC) transporter
GOM48_RS02560	COG1132	(ABC) transporter
GOM48_RS02565	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GOM48_RS02570	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
GOM48_RS02575	COG0133	tryptophan synthase activity
GOM48_RS02580	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
GOM48_RS02585	COG0512	Glutamine amidotransferase of anthranilate synthase
GOM48_RS02600	COG0135	phosphoribosylanthranilate isomerase activity
GOM48_RS02625	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
GOM48_RS02645	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GOM48_RS02655	COG1051	belongs to the nudix hydrolase family
GOM48_RS02665	COG2264	protein methyltransferase activity
GOM48_RS02670	COG1385	rRNA (uridine-N3-)-methyltransferase activity
GOM48_RS02675	COG1164	Oligoendopeptidase f
GOM48_RS02690	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
GOM48_RS02705	COG0720	synthase
GOM48_RS02715	COG3118	belongs to the thioredoxin family
GOM48_RS02735	COG1346	cytolysis
GOM48_RS02745	COG1131	(ABC) transporter
GOM48_RS02750	COG1725	Transcriptional regulator
GOM48_RS02765	COG1484	DNA-dependent DNA replication
GOM48_RS02770	COG0778	Nitroreductase
GOM48_RS02810	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GOM48_RS02815	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GOM48_RS02830	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GOM48_RS02835	COG3458	cephalosporin-C deacetylase activity
GOM48_RS02855	COG1175	transmembrane transport
GOM48_RS02860	COG0395	ABC-type sugar transport system, permease component
GOM48_RS02865	COG2731	YhcH YjgK YiaL family protein
GOM48_RS02875	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GOM48_RS02885	COG2226	methyltransferase
GOM48_RS02895	COG0768	penicillin binding
GOM48_RS02910	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GOM48_RS02915	COG1051	belongs to the nudix hydrolase family
GOM48_RS02935	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
GOM48_RS02950	COG2302	S4 RNA-binding domain
GOM48_RS02960	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GOM48_RS02970	COG0588	phosphoglycerate mutase activity
GOM48_RS02975	COG1136	(ABC) transporter
GOM48_RS02975	COG0577	efflux transmembrane transporter activity
GOM48_RS02990	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GOM48_RS02995	COG1120	ATPase activity
GOM48_RS03010	COG0204	Acyl-transferase
GOM48_RS03015	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
GOM48_RS03020	COG2384	SAM-dependent methyltransferase
GOM48_RS03025	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GOM48_RS03030	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GOM48_RS03035	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
GOM48_RS03040	COG0463	Glycosyl transferase, family 2
GOM48_RS03060	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
GOM48_RS03080	COG0251	oxidation-reduction process
GOM48_RS03090	COG0391	Required for morphogenesis under gluconeogenic growth conditions
GOM48_RS03100	COG0492	ferredoxin-NADP+ reductase activity
GOM48_RS03105	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
GOM48_RS03125	COG1307	EDD domain protein, DegV family
GOM48_RS03135	COG0617	tRNA 3'-terminal CCA addition
GOM48_RS03140	COG0488	(ABC) transporter
GOM48_RS03145	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
GOM48_RS03160	COG0463	Glycosyl transferase, family 2
GOM48_RS03170	COG0242	peptide deformylase activity
GOM48_RS03190	COG1846	Transcriptional regulator
GOM48_RS03200	COG0436	Aminotransferase
GOM48_RS03210	COG0017	Asparaginyl-tRNA synthetase
GOM48_RS03220	COG0360	Binds together with S18 to 16S ribosomal RNA
GOM48_RS03225	COG0629	single-stranded DNA binding
GOM48_RS03230	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GOM48_RS03245	COG1098	S1 RNA binding domain
GOM48_RS03250	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
GOM48_RS03255	COG2827	Endonuclease containing a URI domain
GOM48_RS03280	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GOM48_RS03285	COG2244	polysaccharide biosynthetic process
GOM48_RS03295	COG1242	4 iron, 4 sulfur cluster binding
GOM48_RS03300	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
GOM48_RS03310	COG0025	NhaP-type Na H and K H
GOM48_RS03320	COG1846	Transcriptional regulator
GOM48_RS03345	COG0828	Belongs to the bacterial ribosomal protein bS21 family
GOM48_RS03370	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GOM48_RS03380	COG0647	UMP catabolic process
GOM48_RS03390	COG1393	Belongs to the ArsC family
GOM48_RS03400	COG0483	inositol monophosphate 1-phosphatase activity
GOM48_RS03405	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
GOM48_RS03405	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
GOM48_RS03410	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
GOM48_RS03415	COG0573	inorganic phosphate transmembrane transporter activity
GOM48_RS03420	COG0581	inorganic phosphate transmembrane transporter activity
GOM48_RS03425	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GOM48_RS03430	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GOM48_RS03435	COG0704	Plays a role in the regulation of phosphate uptake
GOM48_RS03470	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
GOM48_RS03475	COG3527	Alpha-acetolactate decarboxylase
GOM48_RS03490	COG3842	ATPase activity
GOM48_RS03515	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GOM48_RS03525	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
GOM48_RS03550	COG0287	Prephenate dehydrogenase
GOM48_RS03555	COG3679	Belongs to the UPF0342 family
GOM48_RS03570	COG0077	Prephenate dehydratase
GOM48_RS03580	COG3475	LICD family
GOM48_RS03585	COG1215	transferase activity, transferring glycosyl groups
GOM48_RS03590	COG3475	LICD family
GOM48_RS03595	COG3475	LICD family
GOM48_RS03625	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM48_RS03625	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM48_RS03640	COG0402	S-adenosylhomocysteine deaminase activity
GOM48_RS03645	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GOM48_RS03650	COG0222	ribosome binding
GOM48_RS03675	COG0604	alcohol dehydrogenase
GOM48_RS03685	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
GOM48_RS03690	COG0167	dihydroorotate dehydrogenase activity
GOM48_RS03695	COG1466	dna polymerase III delta subunit
GOM48_RS03700	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GOM48_RS03705	COG4470	Protein conserved in bacteria
GOM48_RS03710	COG0820	rRNA (adenine-C2-)-methyltransferase activity
GOM48_RS03720	COG0488	(ABC) transporter
GOM48_RS03730	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GOM48_RS03800	COG4443	Transcriptional Coactivator p15 (PC4)
GOM48_RS03810	COG1268	BioY protein
GOM48_RS03815	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GOM48_RS03820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM48_RS03825	COG1136	(ABC) transporter
GOM48_RS03830	COG0577	efflux transmembrane transporter activity
GOM48_RS03835	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM48_RS03835	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM48_RS03860	COG2813	Specifically methylates the guanine in position
GOM48_RS03865	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
GOM48_RS03875	COG0295	cytidine deaminase activity
GOM48_RS03880	COG1744	ABC transporter substrate-binding protein PnrA-like
GOM48_RS03885	COG3845	ABC transporter
GOM48_RS03890	COG4603	Belongs to the binding-protein-dependent transport system permease family
GOM48_RS03895	COG1079	Belongs to the binding-protein-dependent transport system permease family
GOM48_RS03905	COG0187	DNA topoisomerase II activity
GOM48_RS03925	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
GOM48_RS03940	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GOM48_RS03945	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
GOM48_RS03965	COG0539	negative regulation of cytoplasmic translation
GOM48_RS03970	COG1956	GAF domain-containing protein
GOM48_RS03975	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GOM48_RS03990	COG0719	Fe-S assembly protein
GOM48_RS03995	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
GOM48_RS04005	COG0719	Fe-S assembly protein
GOM48_RS04010	COG0531	amino acid
GOM48_RS04015	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
GOM48_RS04020	COG1307	EDD domain protein, DegV family
GOM48_RS04030	COG0039	L-malate dehydrogenase activity
GOM48_RS04035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GOM48_RS04040	COG3764	Sortase (surface protein transpeptidase)
GOM48_RS04095	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GOM48_RS04120	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
GOM48_RS04125	COG1438	arginine binding
GOM48_RS04130	COG0497	DNA recombination
GOM48_RS04135	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GOM48_RS04145	COG0758	DNA mediated transformation
GOM48_RS04150	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GOM48_RS04155	COG2832	Protein of unknown function (DUF454)
GOM48_RS04160	COG3142	Participates in the control of copper homeostasis
GOM48_RS04175	COG0473	3-isopropylmalate dehydrogenase activity
GOM48_RS04190	COG0066	3-isopropylmalate dehydratase activity
GOM48_RS04200	COG1401	restriction endodeoxyribonuclease activity
GOM48_RS04225	COG1196	nuclear chromosome segregation
GOM48_RS04230	COG0196	riboflavin kinase activity
GOM48_RS04275	COG1674	ftsk spoiiie
GOM48_RS04365	COG0791	NLP P60 protein
GOM48_RS04365	COG0741	lytic transglycosylase activity
GOM48_RS04420	COG3689	TIGRFAM TIGR03943 family protein
GOM48_RS04425	COG0701	Predicted permease
GOM48_RS04430	COG2183	response to ionizing radiation
GOM48_RS04445	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
GOM48_RS04455	COG1136	(ABC) transporter
GOM48_RS04460	COG0577	efflux transmembrane transporter activity
GOM48_RS04470	COG2822	iron ion transport
GOM48_RS04475	COG2837	iron assimilation
GOM48_RS04480	COG0672	)-iron permease
GOM48_RS04485	COG0805	protein transport
GOM48_RS04490	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GOM48_RS04500	COG1063	alcohol dehydrogenase
GOM48_RS04510	COG0697	spore germination
GOM48_RS04515	COG4750	Nucleotidyl transferase
GOM48_RS04530	COG3775	system Galactitol-specific IIC component
GOM48_RS04555	COG3684	Belongs to the aldolase LacD family
GOM48_RS04560	COG3711	transcriptional antiterminator
GOM48_RS04575	COG2723	6-phospho-beta-galactosidase activity
GOM48_RS04585	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOM48_RS04590	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOM48_RS04595	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
GOM48_RS04605	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
GOM48_RS04620	COG3443	Belongs to the bacterial solute-binding protein 9 family
GOM48_RS04620	COG0803	Belongs to the bacterial solute-binding protein 9 family
GOM48_RS04655	COG4708	membrane
GOM48_RS04665	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
GOM48_RS04675	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GOM48_RS04680	COG1942	4-Oxalocrotonate Tautomerase
GOM48_RS04685	COG1435	thymidine kinase activity
GOM48_RS04700	COG2890	protein-(glutamine-N5) methyltransferase activity
GOM48_RS04725	COG0741	lytic transglycosylase activity
GOM48_RS04735	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GOM48_RS04740	COG4842	Belongs to the WXG100 family
GOM48_RS04765	COG4499	WXG100 protein secretion system (Wss), protein YukC
GOM48_RS04770	COG1674	ftsk spoiiie
GOM48_RS04835	COG3157	Type VI secretion system effector, Hcp
GOM48_RS05010	COG0135	phosphoribosylanthranilate isomerase activity
GOM48_RS05055	COG3196	Protein conserved in bacteria
GOM48_RS05090	COG1982	Orn Lys Arg decarboxylase major
GOM48_RS05095	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
GOM48_RS05115	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GOM48_RS05125	COG0745	RESPONSE REGULATOR receiver
GOM48_RS05130	COG2205	protein histidine kinase activity
GOM48_RS05140	COG1131	(ABC) transporter
GOM48_RS05145	COG0561	phosphatase activity
GOM48_RS05155	COG1673	EVE domain
GOM48_RS05185	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
GOM48_RS05195	COG0038	chloride channel
GOM48_RS05220	COG0095	Lipoate-protein ligase
GOM48_RS05225	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GOM48_RS05230	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOM48_RS05235	COG0022	dehydrogenase e1 component
GOM48_RS05240	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GOM48_RS05245	COG0534	Mate efflux family protein
GOM48_RS05250	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GOM48_RS05255	COG1051	belongs to the nudix hydrolase family
GOM48_RS05265	COG1011	Hydrolase
GOM48_RS05270	COG0628	permease
GOM48_RS05300	COG2207	Transcriptional regulator
GOM48_RS05300	COG3708	Transcriptional regulator
GOM48_RS05325	COG0560	Phosphoserine phosphatase
GOM48_RS05350	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
GOM48_RS05360	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
GOM48_RS05365	COG1012	belongs to the aldehyde dehydrogenase family
GOM48_RS05370	COG1523	belongs to the glycosyl hydrolase 13 family
GOM48_RS05380	COG2814	Major facilitator Superfamily
GOM48_RS05390	COG0488	(ABC) transporter
GOM48_RS05395	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GOM48_RS05405	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
GOM48_RS05410	COG5002	protein histidine kinase activity
GOM48_RS05415	COG0745	RESPONSE REGULATOR receiver
GOM48_RS05420	COG1194	a g-specific adenine glycosylase
GOM48_RS05425	COG0280	phosphate acetyltransferase
GOM48_RS05430	COG0564	pseudouridine synthase activity
GOM48_RS05440	COG2357	RelA SpoT domain protein
GOM48_RS05450	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GOM48_RS05455	COG1104	cysteine desulfurase activity
GOM48_RS05475	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
GOM48_RS05500	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
GOM48_RS05505	COG4684	Psort location CytoplasmicMembrane, score
GOM48_RS05515	COG1827	regulation of RNA biosynthetic process
GOM48_RS05535	COG0556	nucleotide-excision repair
GOM48_RS05545	COG0765	amino acid transport
GOM48_RS05550	COG1126	abc transporter atp-binding protein
GOM48_RS05555	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
GOM48_RS05560	COG0552	protein localization to endoplasmic reticulum
GOM48_RS05565	COG0561	phosphatase activity
GOM48_RS05570	COG0561	phosphatase activity
GOM48_RS05585	COG0584	glycerophosphoryl diester phosphodiesterase
GOM48_RS05590	COG2176	DNA-directed DNA polymerase activity
GOM48_RS05610	COG0494	nUDIX hydrolase
GOM48_RS05615	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GOM48_RS05630	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GOM48_RS05645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS05650	COG1126	abc transporter atp-binding protein
GOM48_RS05665	COG0628	permease
GOM48_RS05670	COG2706	6-phosphogluconolactonase activity
GOM48_RS05720	COG0826	peptidase U32
GOM48_RS05725	COG2188	Transcriptional regulator
GOM48_RS05740	COG1136	(ABC) transporter
GOM48_RS05760	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GOM48_RS05780	COG0628	permease
GOM48_RS05785	COG1686	Belongs to the peptidase S11 family
GOM48_RS05790	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GOM48_RS05795	COG0785	Cytochrome C biogenesis protein
GOM48_RS05815	COG2972	Histidine kinase
GOM48_RS05820	COG4753	response regulator
GOM48_RS05820	COG2207	Transcriptional regulator
GOM48_RS05825	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM48_RS05825	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM48_RS05830	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GOM48_RS05835	COG0785	Cytochrome C biogenesis protein
GOM48_RS05845	COG0024	Methionine aminopeptidase
GOM48_RS05850	COG4109	DRTGG domain
GOM48_RS05860	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS05865	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS05870	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS05875	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS05880	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS05905	COG1438	arginine binding
GOM48_RS05930	COG0438	transferase activity, transferring glycosyl groups
GOM48_RS05935	COG0438	transferase activity, transferring glycosyl groups
GOM48_RS05940	COG2151	metal-sulfur cluster biosynthetic enzyme
GOM48_RS05945	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GOM48_RS05950	COG0358	DNA primase activity
GOM48_RS05975	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
GOM48_RS05980	COG0772	Belongs to the SEDS family
GOM48_RS05990	COG4122	O-methyltransferase activity
GOM48_RS06010	COG0500	methyltransferase
GOM48_RS06010	COG3615	Tellurite resistance protein tehB
GOM48_RS06020	COG0557	exoribonuclease II activity
GOM48_RS06030	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GOM48_RS06035	COG2814	Major facilitator Superfamily
GOM48_RS06040	COG0237	dephospho-CoA kinase activity
GOM48_RS06045	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
GOM48_RS06055	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
GOM48_RS06065	COG1293	RNA-binding protein homologous to eukaryotic snRNP
GOM48_RS06070	COG0813	purine-nucleoside phosphorylase activity
GOM48_RS06080	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
GOM48_RS06105	COG1136	(ABC) transporter
GOM48_RS06120	COG5002	protein histidine kinase activity
GOM48_RS06125	COG0745	RESPONSE REGULATOR receiver
GOM48_RS06155	COG1028	Short-chain dehydrogenase reductase Sdr
GOM48_RS06165	COG5263	repeat protein
GOM48_RS06165	COG4193	domain, Protein
GOM48_RS06170	COG0167	dihydroorotate dehydrogenase activity
GOM48_RS06175	COG0543	2 iron, 2 sulfur cluster binding
GOM48_RS06185	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GOM48_RS06190	COG0291	Belongs to the bacterial ribosomal protein bL35 family
GOM48_RS06205	COG1131	(ABC) transporter
GOM48_RS06215	COG2333	competence protein COMEC
GOM48_RS06215	COG0658	competence protein
GOM48_RS06220	COG1596	polysaccharide export
GOM48_RS06220	COG1555	photosystem II stabilization
GOM48_RS06225	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
GOM48_RS06230	COG0686	Belongs to the AlaDH PNT family
GOM48_RS06235	COG1702	phosphate starvation-inducible protein PhoH
GOM48_RS06245	COG0456	acetyltransferase
GOM48_RS06245	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
GOM48_RS06250	COG2996	Protein conserved in bacteria
GOM48_RS06260	COG0528	UMP kinase activity
GOM48_RS06280	COG0470	DNA polymerase III
GOM48_RS06290	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
GOM48_RS06305	COG0564	pseudouridine synthase activity
GOM48_RS06310	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GOM48_RS06315	COG0583	DNA-binding transcription factor activity
GOM48_RS06350	COG0513	Belongs to the DEAD box helicase family
GOM48_RS06360	COG1078	dGTPase activity
GOM48_RS06415	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GOM48_RS06420	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GOM48_RS06425	COG1605	Chorismate mutase
GOM48_RS06425	COG0077	Prephenate dehydratase
GOM48_RS06430	COG0716	FMN binding
GOM48_RS06435	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
GOM48_RS06445	COG1914	H( )-stimulated, divalent metal cation uptake system
GOM48_RS06455	COG0505	Belongs to the CarA family
GOM48_RS06470	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GOM48_RS06485	COG0488	(ABC) transporter
GOM48_RS06495	COG1266	CAAX protease self-immunity
GOM48_RS06505	COG1704	LemA family
GOM48_RS06525	COG0697	spore germination
GOM48_RS06530	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
GOM48_RS06540	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
GOM48_RS06565	COG1104	cysteine desulfurase activity
GOM48_RS06575	COG0697	spore germination
GOM48_RS06575	COG1674	ftsk spoiiie
GOM48_RS06580	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
GOM48_RS06580	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
GOM48_RS06580	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
GOM48_RS06585	COG1105	Belongs to the carbohydrate kinase PfkB family
GOM48_RS06590	COG1349	DNA-binding transcription factor activity
GOM48_RS06610	COG0561	phosphatase activity
GOM48_RS06630	COG0492	ferredoxin-NADP+ reductase activity
GOM48_RS06640	COG1126	abc transporter atp-binding protein
GOM48_RS06650	COG1393	Belongs to the ArsC family
GOM48_RS06655	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
GOM48_RS06670	COG1272	protein, Hemolysin III
GOM48_RS06700	COG3976	FMN-binding domain protein
GOM48_RS06700	COG1053	succinate dehydrogenase
GOM48_RS06700	COG0431	NADPH-dependent FMN reductase
GOM48_RS06725	COG0656	L-ascorbic acid biosynthetic process
GOM48_RS06730	COG0726	polysaccharide deacetylase
GOM48_RS06740	COG0187	DNA topoisomerase II activity
GOM48_RS06750	COG0693	protein deglycase activity
GOM48_RS06755	COG0772	Belongs to the SEDS family
GOM48_RS06760	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GOM48_RS06760	COG1199	ATP-dependent helicase activity
GOM48_RS06765	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
GOM48_RS06780	COG3250	beta-galactosidase activity
GOM48_RS06790	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
GOM48_RS06800	COG1126	abc transporter atp-binding protein
GOM48_RS06805	COG0765	amino acid transport
GOM48_RS06810	COG4703	Protein of unknown function (DUF1797)
GOM48_RS06815	COG0542	response to heat
GOM48_RS06835	COG0513	Belongs to the DEAD box helicase family
GOM48_RS06850	COG1263	PTS System
GOM48_RS06850	COG2190	(PTS) system
GOM48_RS06850	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GOM48_RS06855	COG2177	Part of the ABC transporter FtsEX involved in
GOM48_RS06860	COG2884	Cell division ATP-binding protein ftsE
GOM48_RS06870	COG0517	IMP dehydrogenase activity
GOM48_RS06890	COG4750	Nucleotidyl transferase
GOM48_RS06925	COG0740	serine-type endopeptidase activity
GOM48_RS06930	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
GOM48_RS06935	COG2131	deaminase
GOM48_RS06945	COG1307	EDD domain protein, DegV family
GOM48_RS06950	COG2081	HI0933 family
GOM48_RS06965	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
GOM48_RS06975	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
GOM48_RS07000	COG1113	amino acid transport
GOM48_RS07010	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
GOM48_RS07035	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GOM48_RS07040	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
GOM48_RS07045	COG0626	cystathionine gamma-synthase activity
GOM48_RS07050	COG4166	transmembrane transport
GOM48_RS07120	COG0438	transferase activity, transferring glycosyl groups
GOM48_RS07125	COG0438	transferase activity, transferring glycosyl groups
GOM48_RS07135	COG2723	6-phospho-beta-galactosidase activity
GOM48_RS07145	COG0653	protein targeting
GOM48_RS07165	COG0201	protein transport
GOM48_RS07170	COG3250	beta-galactosidase activity
GOM48_RS07175	COG0300	oxidoreductase activity
GOM48_RS07190	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GOM48_RS07210	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GOM48_RS07215	COG1940	carbohydrate kinase activity
GOM48_RS07230	COG3064	Membrane
GOM48_RS07240	COG0789	Transcriptional regulator
GOM48_RS07245	COG0733	neurotransmitter:sodium symporter activity
GOM48_RS07250	COG1482	cell wall glycoprotein biosynthetic process
GOM48_RS07265	COG0028	Belongs to the TPP enzyme family
GOM48_RS07270	COG2217	Heavy metal translocating P-type atpase
GOM48_RS07280	COG3682	Transcriptional regulator
GOM48_RS07290	COG0352	thiamine-phosphate diphosphorylase activity
GOM48_RS07305	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
GOM48_RS07315	COG4172	Belongs to the ABC transporter superfamily
GOM48_RS07325	COG1304	FMN binding
GOM48_RS07335	COG4215	(ABC) transporter
GOM48_RS07340	COG1126	abc transporter atp-binding protein
GOM48_RS07345	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS07360	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
GOM48_RS07385	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
GOM48_RS07390	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
GOM48_RS07395	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
GOM48_RS07400	COG1609	Transcriptional regulator
GOM48_RS07405	COG1230	cation diffusion facilitator family transporter
GOM48_RS07420	COG1174	glycine betaine transport
GOM48_RS07440	COG0366	Alpha amylase catalytic
GOM48_RS07445	COG0395	ABC-type sugar transport system, permease component
GOM48_RS07450	COG1175	transmembrane transport
GOM48_RS07455	COG1653	transport
GOM48_RS07460	COG3345	alpha-galactosidase
GOM48_RS07465	COG2207	Transcriptional regulator
GOM48_RS07600	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GOM48_RS07635	COG4221	oxidoreductase activity
GOM48_RS07640	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM48_RS07645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GOM48_RS07655	COG0504	CTP synthase activity
GOM48_RS07675	COG0525	valine-tRNA ligase activity
GOM48_RS07685	COG0519	Catalyzes the synthesis of GMP from XMP
GOM48_RS07725	COG2740	Nucleic-acid-binding protein implicated in transcription termination
GOM48_RS07730	COG0195	Participates in both transcription termination and antitermination
GOM48_RS07780	COG2274	protein secretion by the type I secretion system
GOM48_RS07785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM48_RS07795	COG3290	protein histidine kinase activity
GOM48_RS07820	COG1131	(ABC) transporter
GOM48_RS07825	COG0537	adenosine 5'-monophosphoramidase activity
GOM48_RS07840	COG0484	heat shock protein binding
GOM48_RS07855	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GOM48_RS07880	COG0174	glutamine synthetase
GOM48_RS07885	COG0789	Transcriptional regulator
GOM48_RS07895	COG0126	phosphoglycerate kinase activity
GOM48_RS07925	COG1363	Peptidase, m42
GOM48_RS07930	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GOM48_RS07935	COG4605	iron ion homeostasis
GOM48_RS07940	COG4604	ABC transporter, ATP-binding protein
GOM48_RS07945	COG4607	ABC-type enterochelin transport system periplasmic component
GOM48_RS07955	COG1187	pseudouridine synthase activity
GOM48_RS07975	COG0517	IMP dehydrogenase activity
GOM48_RS08000	COG0366	Alpha amylase catalytic
GOM48_RS08010	COG0768	penicillin binding
GOM48_RS08015	COG4839	cell division protein FtsL
GOM48_RS08050	COG0386	Belongs to the glutathione peroxidase family
GOM48_RS08055	COG0366	Alpha amylase catalytic
GOM48_RS08075	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GOM48_RS08080	COG3620	sequence-specific DNA binding
GOM48_RS08150	COG1285	pathogenesis
GOM48_RS08155	COG1178	ABC-type Fe3 transport system permease component
GOM48_RS08175	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
GOM48_RS08180	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
GOM48_RS08185	COG0704	Plays a role in the regulation of phosphate uptake
GOM48_RS08195	COG5434	Belongs to the glycosyl hydrolase 28 family
GOM48_RS08200	COG0542	response to heat
GOM48_RS08205	COG1396	sequence-specific DNA binding
GOM48_RS08245	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
GOM48_RS08250	COG1668	transmembrane transport
GOM48_RS08255	COG4152	abc transporter atp-binding protein
GOM48_RS08260	COG0072	phenylalanine-tRNA ligase activity
GOM48_RS08260	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM48_RS08265	COG0456	acetyltransferase
GOM48_RS08280	COG0671	phosphoesterase, PA-phosphatase related
GOM48_RS08285	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
GOM48_RS08295	COG0569	domain protein
GOM48_RS08300	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GOM48_RS08305	COG4608	Belongs to the ABC transporter superfamily
GOM48_RS08310	COG0444	Belongs to the ABC transporter superfamily
GOM48_RS08315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
GOM48_RS08320	COG0601	transmembrane transport
GOM48_RS08325	COG4166	transmembrane transport
GOM48_RS08335	COG1253	flavin adenine dinucleotide binding
GOM48_RS08350	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM48_RS08360	COG3480	Lon protease (S16) C-terminal proteolytic domain
GOM48_RS08370	COG0742	ribosomal rna small subunit methyltransferase
GOM48_RS08385	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GOM48_RS08390	COG1254	Belongs to the acylphosphatase family
GOM48_RS08400	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
GOM48_RS08410	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GOM48_RS08415	COG3481	metal-dependent phosphohydrolase, HD sub domain
GOM48_RS08425	COG1564	THIamine pyrophosphokinase
GOM48_RS08435	COG1162	GTPase activity
GOM48_RS08460	COG0084	hydrolase, TatD family'
GOM48_RS08465	COG0531	amino acid
GOM48_RS08470	COG4166	transmembrane transport
GOM48_RS08480	COG0436	Aminotransferase
GOM48_RS08490	COG0589	response to stress
GOM48_RS08495	COG0561	phosphatase activity
GOM48_RS08500	COG0252	asparaginase activity
GOM48_RS08505	COG1609	Transcriptional regulator
GOM48_RS08515	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GOM48_RS08515	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GOM48_RS08525	COG0285	dihydrofolate synthase activity
GOM48_RS08530	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GOM48_RS08535	COG1266	CAAX protease self-immunity
GOM48_RS08540	COG2252	PERMEase
GOM48_RS08545	COG0561	phosphatase activity
GOM48_RS08555	COG3715	PTS system
GOM48_RS08560	COG3716	PTS system mannose fructose sorbose family IID component
GOM48_RS08565	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
GOM48_RS08570	COG3579	cysteine-type endopeptidase activity
GOM48_RS08575	COG1187	pseudouridine synthase activity
GOM48_RS08580	COG2261	transglycosylase associated protein
GOM48_RS08585	COG2309	aminopeptidase activity
GOM48_RS08595	COG2176	DNA-directed DNA polymerase activity
GOM48_RS08605	COG2723	6-phospho-beta-galactosidase activity
GOM48_RS08615	COG0750	zinc metalloprotease
GOM48_RS08620	COG4589	Belongs to the CDS family
GOM48_RS08625	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GOM48_RS08630	COG1126	abc transporter atp-binding protein
GOM48_RS08635	COG0765	amino acid transport
GOM48_RS08640	COG0765	amino acid transport
GOM48_RS08645	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS08665	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
GOM48_RS08675	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GOM48_RS08695	COG2255	four-way junction helicase activity
GOM48_RS08735	COG3279	Response regulator of the LytR AlgR family
GOM48_RS08760	COG0588	phosphoglycerate mutase activity
GOM48_RS08765	COG2848	UPF0210 protein
GOM48_RS08770	COG3830	Belongs to the UPF0237 family
GOM48_RS08780	COG0202	RNA polymerase activity
GOM48_RS08785	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GOM48_RS08795	COG0257	Belongs to the bacterial ribosomal protein bL36 family
GOM48_RS08800	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GOM48_RS08810	COG0201	protein transport
GOM48_RS08825	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GOM48_RS08845	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GOM48_RS08865	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GOM48_RS08875	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
GOM48_RS08890	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GOM48_RS08940	COG1328	CTP reductase activity
GOM48_RS08955	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOM48_RS08960	COG1454	alcohol dehydrogenase
GOM48_RS08970	COG0285	dihydrofolate synthase activity
GOM48_RS08995	COG1393	Belongs to the ArsC family
GOM48_RS09000	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
GOM48_RS09005	COG0006	proline dipeptidase activity
GOM48_RS09010	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
GOM48_RS09045	COG2818	Glycosylase
GOM48_RS09055	COG1395	domain, Protein
GOM48_RS09080	COG1438	arginine binding
GOM48_RS09100	COG1780	Probably involved in ribonucleotide reductase function
GOM48_RS09110	COG2207	Transcriptional regulator
GOM48_RS09110	COG4753	response regulator
GOM48_RS09115	COG2972	Histidine kinase
GOM48_RS09135	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
GOM48_RS09140	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GOM48_RS09145	COG1464	Belongs to the NlpA lipoprotein family
GOM48_RS09150	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS09180	COG1396	sequence-specific DNA binding
GOM48_RS09195	COG1214	PFAM Peptidase M22, glycoprotease
GOM48_RS09215	COG0445	tRNA wobble uridine modification
GOM48_RS09220	COG0494	nUDIX hydrolase
GOM48_RS09225	COG0494	nUDIX hydrolase
GOM48_RS09240	COG0137	argininosuccinate synthase activity
GOM48_RS09245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM48_RS09265	COG1388	LysM domain
GOM48_RS09265	COG3584	3D domain protein
GOM48_RS09270	COG1760	l-serine dehydratase
GOM48_RS09275	COG1760	l-serine dehydratase
GOM48_RS09280	COG0546	phosphoglycolate phosphatase activity
GOM48_RS09290	COG1216	Glycosyl transferase, family 2
GOM48_RS09295	COG2807	transmembrane transport
GOM48_RS09345	COG1653	transport
GOM48_RS09350	COG0395	ABC-type sugar transport system, permease component
GOM48_RS09355	COG4209	transmembrane transport
GOM48_RS09375	COG0383	alpha-mannosidase activity
GOM48_RS09385	COG3537	Alpha-1,2-mannosidase
GOM48_RS09405	COG0549	Belongs to the carbamate kinase family
GOM48_RS09410	COG1288	antiporter activity
GOM48_RS09415	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GOM48_RS09420	COG0803	Belongs to the bacterial solute-binding protein 9 family
GOM48_RS09420	COG3443	Belongs to the bacterial solute-binding protein 9 family
GOM48_RS09425	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GOM48_RS09430	COG1121	(ABC) transporter
GOM48_RS09435	COG1846	Transcriptional regulator
GOM48_RS09440	COG0737	Belongs to the 5'-nucleotidase family
GOM48_RS09445	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
GOM48_RS09450	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GOM48_RS09455	COG1696	Membrane protein involved in D-alanine export
GOM48_RS09475	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GOM48_RS09495	COG3201	nicotinamide mononucleotide transporter
GOM48_RS09505	COG0542	response to heat
GOM48_RS09510	COG4463	regulation of RNA biosynthetic process
GOM48_RS09515	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
GOM48_RS09520	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
GOM48_RS09525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
GOM48_RS09535	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GOM48_RS09535	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GOM48_RS09540	COG3942	CHAP domain
GOM48_RS09550	COG0305	Participates in initiation and elongation during chromosome replication
GOM48_RS09575	COG1040	competence protein
GOM48_RS09580	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
GOM48_RS09585	COG1739	Uncharacterized protein family UPF0029
GOM48_RS09610	COG3942	CHAP domain
GOM48_RS09620	COG1792	Involved in formation and maintenance of cell shape
GOM48_RS09625	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
GOM48_RS09630	COG1122	ATPase activity
GOM48_RS09635	COG1122	ATPase activity
GOM48_RS09640	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
GOM48_RS09650	COG0612	Peptidase, M16
GOM48_RS09655	COG0612	Peptidase, M16
GOM48_RS09660	COG2501	S4 domain
GOM48_RS09670	COG0516	GMP reductase activity
GOM48_RS09670	COG0517	IMP dehydrogenase activity
GOM48_RS09675	COG0180	Tryptophanyl-tRNA synthetase
GOM48_RS09680	COG0488	(ABC) transporter
GOM48_RS09690	COG1511	domain protein
GOM48_RS09690	COG1511	domain protein
GOM48_RS09735	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GOM48_RS09740	COG1475	DNA binding