locus-tag class description SPAF_RS00005 PF00308 Bacterial dnaA protein SPAF_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SPAF_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SPAF_RS00010 PF02767 DNA polymerase III beta subunit, central domain SPAF_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SPAF_RS00025 PF06071 Protein of unknown function (DUF933) SPAF_RS00025 PF01926 50S ribosome-binding GTPase SPAF_RS00030 PF01195 Peptidyl-tRNA hydrolase SPAF_RS00035 PF02559 CarD-like/TRCF domain SPAF_RS00035 PF00270 DEAD/DEAH box helicase SPAF_RS00035 PF00271 Helicase conserved C-terminal domain SPAF_RS00035 PF03461 TRCF domain SPAF_RS00035 PF17757 UvrB interaction domain SPAF_RS00040 PF01479 S4 domain SPAF_RS00055 PF01171 PP-loop family SPAF_RS00060 PF00156 Phosphoribosyl transferase domain SPAF_RS00065 PF06480 FtsH Extracellular SPAF_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS00065 PF17862 AAA+ lid domain SPAF_RS00065 PF01434 Peptidase family M41 SPAF_RS00080 PF13936 Helix-turn-helix domain SPAF_RS00085 PF13936 Helix-turn-helix domain SPAF_RS00200 PF04085 rod shape-determining protein MreC SPAF_RS00210 PF05257 CHAP domain SPAF_RS00210 PF01476 LysM domain SPAF_RS00220 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPAF_RS00220 PF14572 Phosphoribosyl synthetase-associated domain SPAF_RS00230 PF04203 Sortase domain SPAF_RS00235 PF00155 Aminotransferase class I and II SPAF_RS00240 PF11967 Recombination protein O N terminal SPAF_RS00240 PF02565 Recombination protein O C terminal SPAF_RS00245 PF02504 Fatty acid synthesis protein SPAF_RS00250 PF00550 Phosphopantetheine attachment site SPAF_RS00255 PF01259 SAICAR synthetase SPAF_RS00260 PF00586 AIR synthase related protein, N-terminal domain SPAF_RS00260 PF02769 AIR synthase related protein, C-terminal domain SPAF_RS00260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SPAF_RS00265 PF00156 Phosphoribosyl transferase domain SPAF_RS00270 PF02769 AIR synthase related protein, C-terminal domain SPAF_RS00270 PF00586 AIR synthase related protein, N-terminal domain SPAF_RS00275 PF00551 Formyl transferase SPAF_RS00285 PF01808 AICARFT/IMPCHase bienzyme SPAF_RS00285 PF02142 MGS-like domain SPAF_RS00290 PF05257 CHAP domain SPAF_RS00290 PF01476 LysM domain SPAF_RS00295 PF02844 Phosphoribosylglycinamide synthetase, N domain SPAF_RS00295 PF02843 Phosphoribosylglycinamide synthetase, C domain SPAF_RS00295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPAF_RS00300 PF00731 AIR carboxylase SPAF_RS00305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SPAF_RS00305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPAF_RS00305 PF02222 ATP-grasp domain SPAF_RS00320 PF03793 PASTA domain SPAF_RS00320 PF00069 Protein kinase domain SPAF_RS00325 PF00206 Lyase SPAF_RS00325 PF10397 Adenylosuccinate lyase C-terminus SPAF_RS00330 PF00392 Bacterial regulatory proteins, gntR family SPAF_RS00330 PF07702 UTRA domain SPAF_RS00335 PF01301 Glycosyl hydrolases family 35 SPAF_RS00340 PF03830 PTS system sorbose subfamily IIB component SPAF_RS00350 PF03613 PTS system mannose/fructose/sorbose family IID component SPAF_RS00360 PF01380 SIS domain SPAF_RS00365 PF01263 Aldose 1-epimerase SPAF_RS00375 PF17864 RuvB AAA lid domain SPAF_RS00375 PF05491 RuvB C-terminal winged helix domain SPAF_RS00375 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPAF_RS00385 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPAF_RS00395 PF01757 Acyltransferase family SPAF_RS00400 PF00465 Iron-containing alcohol dehydrogenase SPAF_RS00400 PF00171 Aldehyde dehydrogenase family SPAF_RS00420 PF08240 Alcohol dehydrogenase GroES-like domain SPAF_RS00420 PF13823 Alcohol dehydrogenase GroES-associated SPAF_RS00420 PF00107 Zinc-binding dehydrogenase SPAF_RS00430 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPAF_RS00440 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS00445 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS00450 PF04074 YhcH/YjgK/YiaL SPAF_RS00460 PF00701 Dihydrodipicolinate synthetase family SPAF_RS00465 PF00480 ROK family SPAF_RS00470 PF01380 SIS domain SPAF_RS00470 PF01418 Helix-turn-helix domain, rpiR family SPAF_RS00480 PF01496 V-type ATPase 116kDa subunit family SPAF_RS00485 PF00137 ATP synthase subunit C SPAF_RS00495 PF01992 ATP synthase (C/AC39) subunit SPAF_RS00500 PF01990 ATP synthase (F/14-kDa) subunit SPAF_RS00510 PF16886 ATPsynthase alpha/beta subunit N-term extension SPAF_RS00510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPAF_RS00510 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPAF_RS00515 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPAF_RS00515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPAF_RS00520 PF01813 ATP synthase subunit D SPAF_RS00525 PF01471 Putative peptidoglycan binding domain SPAF_RS00525 PF01476 LysM domain SPAF_RS00525 PF01510 N-acetylmuramoyl-L-alanine amidase SPAF_RS00530 PF07690 Major Facilitator Superfamily SPAF_RS00545 PF01022 Bacterial regulatory protein, arsR family SPAF_RS00555 PF04650 YSIRK type signal peptide SPAF_RS00555 PF08829 Alpha C protein N terminal SPAF_RS00555 PF17480 AlphaC C-terminal SPAF_RS00555 PF00746 LPXTG cell wall anchor motif SPAF_RS00560 PF00471 Ribosomal protein L33 SPAF_RS00565 PF01783 Ribosomal L32p protein family SPAF_RS00580 PF00920 Dehydratase family SPAF_RS00590 PF00860 Permease family SPAF_RS00595 PF01883 Iron-sulfur cluster assembly protein SPAF_RS00600 PF03129 Anticodon binding domain SPAF_RS00600 PF13393 Histidyl-tRNA synthetase SPAF_RS00605 PF00291 Pyridoxal-phosphate dependent enzyme SPAF_RS00605 PF14821 Threonine synthase N terminus SPAF_RS00610 PF01554 MatE SPAF_RS00620 PF01047 MarR family SPAF_RS00625 PF06993 Protein of unknown function (DUF1304) SPAF_RS00630 PF04715 Anthranilate synthase component I, N terminal region SPAF_RS00630 PF00425 chorismate binding enzyme SPAF_RS00635 PF00117 Glutamine amidotransferase class-I SPAF_RS00640 PF02885 Glycosyl transferase family, helical bundle domain SPAF_RS00640 PF00591 Glycosyl transferase family, a/b domain SPAF_RS00645 PF00218 Indole-3-glycerol phosphate synthase SPAF_RS00650 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SPAF_RS00655 PF00291 Pyridoxal-phosphate dependent enzyme SPAF_RS00660 PF00290 Tryptophan synthase alpha chain SPAF_RS00670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPAF_RS00670 PF01367 5'-3' exonuclease, C-terminal SAM fold SPAF_RS00670 PF00476 DNA polymerase family A SPAF_RS00675 PF13380 CoA binding domain SPAF_RS00685 PF01702 Queuine tRNA-ribosyltransferase SPAF_RS00690 PF00338 Ribosomal protein S10p/S20e SPAF_RS00695 PF00297 Ribosomal protein L3 SPAF_RS00700 PF00573 Ribosomal protein L4/L1 family SPAF_RS00705 PF00276 Ribosomal protein L23 SPAF_RS00710 PF00181 Ribosomal Proteins L2, RNA binding domain SPAF_RS00710 PF03947 Ribosomal Proteins L2, C-terminal domain SPAF_RS00715 PF00203 Ribosomal protein S19 SPAF_RS00720 PF00237 Ribosomal protein L22p/L17e SPAF_RS00725 PF00189 Ribosomal protein S3, C-terminal domain SPAF_RS00725 PF07650 KH domain SPAF_RS00730 PF00252 Ribosomal protein L16p/L10e SPAF_RS00735 PF00831 Ribosomal L29 protein SPAF_RS00740 PF00366 Ribosomal protein S17 SPAF_RS00745 PF00238 Ribosomal protein L14p/L23e SPAF_RS00755 PF00673 ribosomal L5P family C-terminus SPAF_RS00755 PF00281 Ribosomal protein L5 SPAF_RS00760 PF00253 Ribosomal protein S14p/S29e SPAF_RS00765 PF00410 Ribosomal protein S8 SPAF_RS00770 PF00347 Ribosomal protein L6 SPAF_RS00775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SPAF_RS00780 PF03719 Ribosomal protein S5, C-terminal domain SPAF_RS00780 PF00333 Ribosomal protein S5, N-terminal domain SPAF_RS00785 PF00327 Ribosomal protein L30p/L7e SPAF_RS00790 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SPAF_RS00795 PF00344 SecY translocase SPAF_RS00800 PF05191 Adenylate kinase, active site lid SPAF_RS00805 PF01176 Translation initiation factor 1A / IF-1 SPAF_RS00810 PF00416 Ribosomal protein S13/S18 SPAF_RS00815 PF00411 Ribosomal protein S11 SPAF_RS00820 PF01000 RNA polymerase Rpb3/RpoA insert domain SPAF_RS00820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPAF_RS00820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPAF_RS00825 PF01196 Ribosomal protein L17 SPAF_RS00860 PF00665 Integrase core domain SPAF_RS00860 PF13333 Integrase core domain SPAF_RS00870 PF00696 Amino acid kinase family SPAF_RS00870 PF13840 ACT domain SPAF_RS00875 PF00378 Enoyl-CoA hydratase/isomerase SPAF_RS00880 PF01047 MarR family SPAF_RS00885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPAF_RS00885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPAF_RS00890 PF00550 Phosphopantetheine attachment site SPAF_RS00895 PF03060 Nitronate monooxygenase SPAF_RS00900 PF00698 Acyl transferase domain SPAF_RS00910 PF02801 Beta-ketoacyl synthase, C-terminal domain SPAF_RS00910 PF00109 Beta-ketoacyl synthase, N-terminal domain SPAF_RS00915 PF00364 Biotin-requiring enzyme SPAF_RS00920 PF07977 FabA-like domain SPAF_RS00925 PF00289 Biotin carboxylase, N-terminal domain SPAF_RS00925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPAF_RS00925 PF02785 Biotin carboxylase C-terminal domain SPAF_RS00930 PF17848 Acetyl-coA carboxylase zinc finger domain SPAF_RS00930 PF01039 Carboxyl transferase domain SPAF_RS00935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPAF_RS00940 PF02403 Seryl-tRNA synthetase N-terminal domain SPAF_RS00940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPAF_RS00950 PF03613 PTS system mannose/fructose/sorbose family IID component SPAF_RS00955 PF03609 PTS system sorbose-specific iic component SPAF_RS00965 PF08240 Alcohol dehydrogenase GroES-like domain SPAF_RS00965 PF00107 Zinc-binding dehydrogenase SPAF_RS00975 PF00860 Permease family SPAF_RS00980 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SPAF_RS00985 PF13302 Acetyltransferase (GNAT) domain SPAF_RS00990 PF03816 Cell envelope-related transcriptional attenuator domain SPAF_RS01000 PF01230 HIT domain SPAF_RS01005 PF00005 ABC transporter SPAF_RS01020 PF02390 Putative methyltransferase SPAF_RS01025 PF02576 RimP N-terminal domain SPAF_RS01025 PF17384 RimP C-terminal SH3 domain SPAF_RS01030 PF00575 S1 RNA binding domain SPAF_RS01030 PF08529 NusA N-terminal domain SPAF_RS01030 PF13184 NusA-like KH domain SPAF_RS01035 PF04296 Protein of unknown function (DUF448) SPAF_RS01040 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPAF_RS01045 PF04760 Translation initiation factor IF-2, N-terminal region SPAF_RS01045 PF11987 Translation-initiation factor 2 SPAF_RS01045 PF00009 Elongation factor Tu GTP binding domain SPAF_RS01050 PF02033 Ribosome-binding factor A SPAF_RS01055 PF02690 Na+/Pi-cotransporter SPAF_RS01060 PF01979 Amidohydrolase family SPAF_RS01070 PF00248 Aldo/keto reductase family SPAF_RS01075 PF00082 Subtilase family SPAF_RS01075 PF02225 PA domain SPAF_RS01075 PF06280 Fn3-like domain SPAF_RS01080 PF02091 Glycyl-tRNA synthetase alpha subunit SPAF_RS01085 PF02092 Glycyl-tRNA synthetase beta subunit SPAF_RS01090 PF05979 Bacterial protein of unknown function (DUF896) SPAF_RS01095 PF00324 Amino acid permease SPAF_RS01105 PF01795 MraW methylase family SPAF_RS01115 PF03717 Penicillin-binding Protein dimerisation domain SPAF_RS01115 PF00905 Penicillin binding protein transpeptidase domain SPAF_RS01115 PF03793 PASTA domain SPAF_RS01120 PF00953 Glycosyl transferase family 4 SPAF_RS01120 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPAF_RS01125 PF00271 Helicase conserved C-terminal domain SPAF_RS01125 PF00270 DEAD/DEAH box helicase SPAF_RS01135 PF00005 ABC transporter SPAF_RS01145 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS01150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SPAF_RS01150 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SPAF_RS01150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPAF_RS01155 PF02540 NAD synthase SPAF_RS01165 PF03051 Peptidase C1-like family SPAF_RS01175 PF00905 Penicillin binding protein transpeptidase domain SPAF_RS01175 PF00912 Transglycosylase SPAF_RS01180 PF03838 Recombination protein U SPAF_RS01185 PF06908 YspA SLOG family SPAF_RS01190 PF05103 DivIVA protein SPAF_RS01195 PF01170 Putative RNA methylase family UPF0020 SPAF_RS01195 PF02926 THUMP domain SPAF_RS01200 PF18708 MapZ extracellular C-terminal domain 2 SPAF_RS01200 PF18041 MapZ extracellular domain 1 SPAF_RS01210 PF02664 S-Ribosylhomocysteinase (LuxS) SPAF_RS01215 PF01966 HD domain SPAF_RS01215 PF00013 KH domain SPAF_RS01215 PF12072 Domain of unknown function (DUF3552) SPAF_RS01220 PF00625 Guanylate kinase SPAF_RS01225 PF01192 RNA polymerase Rpb6 SPAF_RS01230 PF00271 Helicase conserved C-terminal domain SPAF_RS01230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SPAF_RS01230 PF17764 3′ DNA-binding domain (3′BD) SPAF_RS01230 PF04851 Type III restriction enzyme, res subunit SPAF_RS01230 PF18074 Primosomal protein N C-terminal domain SPAF_RS01235 PF00551 Formyl transferase SPAF_RS01235 PF02911 Formyl transferase, C-terminal domain SPAF_RS01240 PF01029 NusB family SPAF_RS01240 PF01189 16S rRNA methyltransferase RsmB/F SPAF_RS01250 PF00069 Protein kinase domain SPAF_RS01250 PF03793 PASTA domain SPAF_RS01265 PF00672 HAMP domain SPAF_RS01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS01265 PF07730 Histidine kinase SPAF_RS01270 PF00072 Response regulator receiver domain SPAF_RS01270 PF00196 Bacterial regulatory proteins, luxR family SPAF_RS01275 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPAF_RS01280 PF00575 S1 RNA binding domain SPAF_RS01285 PF00291 Pyridoxal-phosphate dependent enzyme SPAF_RS01290 PF01205 Uncharacterized protein family UPF0029 SPAF_RS01290 PF09186 Domain of unknown function (DUF1949) SPAF_RS01295 PF04851 Type III restriction enzyme, res subunit SPAF_RS01295 PF00271 Helicase conserved C-terminal domain SPAF_RS01300 PF00156 Phosphoribosyl transferase domain SPAF_RS01305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPAF_RS01305 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SPAF_RS01390 PF14659 Phage integrase, N-terminal SAM-like domain SPAF_RS01390 PF00589 Phage integrase family SPAF_RS01425 PF01047 MarR family SPAF_RS01430 PF00005 ABC transporter SPAF_RS01435 PF00950 ABC 3 transport family SPAF_RS01440 PF01297 Zinc-uptake complex component A periplasmic SPAF_RS01440 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPAF_RS01455 PF07971 Glycosyl hydrolase family 92 SPAF_RS01455 PF17678 Glycosyl hydrolase family 92 N-terminal domain SPAF_RS01465 PF09261 Alpha mannosidase middle domain SPAF_RS01465 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SPAF_RS01465 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPAF_RS01465 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPAF_RS01465 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SPAF_RS01470 PF00480 ROK family SPAF_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS01485 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS01490 PF12010 Domain of unknown function (DUF3502) SPAF_RS01500 PF02743 Cache domain SPAF_RS01500 PF06580 Histidine kinase SPAF_RS01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS01500 PF00672 HAMP domain SPAF_RS01505 PF12833 Helix-turn-helix domain SPAF_RS01505 PF00072 Response regulator receiver domain SPAF_RS01510 PF00440 Bacterial regulatory proteins, tetR family SPAF_RS01515 PF02525 Flavodoxin-like fold SPAF_RS01520 PF08241 Methyltransferase domain SPAF_RS01530 PF13732 Domain of unknown function (DUF4162) SPAF_RS01530 PF00005 ABC transporter SPAF_RS01540 PF00072 Response regulator receiver domain SPAF_RS01540 PF04397 LytTr DNA-binding domain SPAF_RS01550 PF01479 S4 domain SPAF_RS01550 PF00579 tRNA synthetases class I (W and Y) SPAF_RS01555 PF00905 Penicillin binding protein transpeptidase domain SPAF_RS01555 PF00912 Transglycosylase SPAF_RS01560 PF04563 RNA polymerase beta subunit SPAF_RS01560 PF04565 RNA polymerase Rpb2, domain 3 SPAF_RS01560 PF10385 RNA polymerase beta subunit external 1 domain SPAF_RS01560 PF00562 RNA polymerase Rpb2, domain 6 SPAF_RS01560 PF04560 RNA polymerase Rpb2, domain 7 SPAF_RS01560 PF04561 RNA polymerase Rpb2, domain 2 SPAF_RS01565 PF04997 RNA polymerase Rpb1, domain 1 SPAF_RS01565 PF00623 RNA polymerase Rpb1, domain 2 SPAF_RS01565 PF04983 RNA polymerase Rpb1, domain 3 SPAF_RS01565 PF05000 RNA polymerase Rpb1, domain 4 SPAF_RS01565 PF04998 RNA polymerase Rpb1, domain 5 SPAF_RS01570 PF02350 UDP-N-acetylglucosamine 2-epimerase SPAF_RS01585 PF01270 Glycosyl hydrolases family 8 SPAF_RS01595 PF00437 Type II/IV secretion system protein SPAF_RS01600 PF00482 Type II secretion system (T2SS), protein F SPAF_RS01605 PF07963 Prokaryotic N-terminal methylation motif SPAF_RS01630 PF02384 N-6 DNA Methylase SPAF_RS01635 PF00871 Acetokinase family SPAF_RS01640 PF02517 CPBP intramembrane metalloprotease SPAF_RS01645 PF00809 Pterin binding enzyme SPAF_RS01650 PF08245 Mur ligase middle domain SPAF_RS01650 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS01655 PF01227 GTP cyclohydrolase I SPAF_RS01660 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPAF_RS01660 PF02152 Dihydroneopterin aldolase SPAF_RS01665 PF08903 Domain of unknown function (DUF1846) SPAF_RS01670 PF05343 M42 glutamyl aminopeptidase SPAF_RS01680 PF00085 Thioredoxin SPAF_RS01685 PF01588 Putative tRNA binding domain SPAF_RS01685 PF14794 Domain of unknown function (DUF4479) SPAF_RS01690 PF00436 Single-strand binding protein family SPAF_RS01700 PF07730 Histidine kinase SPAF_RS01705 PF00196 Bacterial regulatory proteins, luxR family SPAF_RS01705 PF00072 Response regulator receiver domain SPAF_RS01720 PF03830 PTS system sorbose subfamily IIB component SPAF_RS01730 PF03613 PTS system mannose/fructose/sorbose family IID component SPAF_RS01740 PF00166 Chaperonin 10 Kd subunit SPAF_RS01745 PF00118 TCP-1/cpn60 chaperonin family SPAF_RS01765 PF00005 ABC transporter SPAF_RS01765 PF13732 Domain of unknown function (DUF4162) SPAF_RS01775 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS01775 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPAF_RS01785 PF03601 Conserved hypothetical protein 698 SPAF_RS01790 PF01381 Helix-turn-helix SPAF_RS01815 PF12002 MgsA AAA+ ATPase C terminal SPAF_RS01815 PF16193 AAA C-terminal domain SPAF_RS01815 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPAF_RS01840 PF04452 RNA methyltransferase SPAF_RS01875 PF04607 Region found in RelA / SpoT proteins SPAF_RS01875 PF13291 ACT domain SPAF_RS01875 PF02824 TGS domain SPAF_RS01880 PF02580 D-Tyr-tRNA(Tyr) deacylase SPAF_RS01895 PF08534 Redoxin SPAF_RS01900 PF01297 Zinc-uptake complex component A periplasmic SPAF_RS01905 PF00950 ABC 3 transport family SPAF_RS01910 PF00005 ABC transporter SPAF_RS01915 PF01431 Peptidase family M13 SPAF_RS01915 PF05649 Peptidase family M13 SPAF_RS01920 PF04055 Radical SAM superfamily SPAF_RS01925 PF00455 DeoR C terminal sensor domain SPAF_RS01925 PF08220 DeoR-like helix-turn-helix domain SPAF_RS01930 PF04198 Putative sugar-binding domain SPAF_RS01935 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPAF_RS01945 PF02378 Phosphotransferase system, EIIC SPAF_RS01950 PF01228 Glycine radical SPAF_RS01950 PF02901 Pyruvate formate lyase-like SPAF_RS01955 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPAF_RS01960 PF00465 Iron-containing alcohol dehydrogenase SPAF_RS01965 PF00768 D-alanyl-D-alanine carboxypeptidase SPAF_RS01965 PF07943 Penicillin-binding protein 5, C-terminal domain SPAF_RS01970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPAF_RS01975 PF00133 tRNA synthetases class I (I, L, M and V) SPAF_RS01975 PF09334 tRNA synthetases class I (M) SPAF_RS01975 PF13603 Leucyl-tRNA synthetase, Domain 2 SPAF_RS01975 PF08264 Anticodon-binding domain of tRNA SPAF_RS01985 PF01047 MarR family SPAF_RS01995 PF00005 ABC transporter SPAF_RS01995 PF00571 CBS domain SPAF_RS02000 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02010 PF07722 Peptidase C26 SPAF_RS02015 PF00232 Glycosyl hydrolase family 1 SPAF_RS02020 PF01380 SIS domain SPAF_RS02025 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPAF_RS02045 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPAF_RS02050 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02055 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02060 PF00005 ABC transporter SPAF_RS02100 PF17871 AAA lid domain SPAF_RS02100 PF07724 AAA domain (Cdc48 subfamily) SPAF_RS02100 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS02100 PF10431 C-terminal, D2-small domain, of ClpB protein SPAF_RS02110 PF02699 Preprotein translocase subunit SPAF_RS02115 PF01255 Putative undecaprenyl diphosphate synthase SPAF_RS02125 PF02163 Peptidase family M50 SPAF_RS02130 PF03129 Anticodon binding domain SPAF_RS02130 PF04073 Aminoacyl-tRNA editing domain SPAF_RS02130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPAF_RS02135 PF06013 Proteins of 100 residues with WXG SPAF_RS02155 PF10140 WXG100 protein secretion system (Wss), protein YukC SPAF_RS02160 PF01580 FtsK/SpoIIIE family SPAF_RS02160 PF12538 DNA transporter SPAF_RS02195 PF02811 PHP domain SPAF_RS02195 PF14480 DNA polymerase III polC-type N-terminus I SPAF_RS02195 PF11490 DNA polymerase III polC-type N-terminus II SPAF_RS02195 PF00929 Exonuclease SPAF_RS02195 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPAF_RS02195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPAF_RS02205 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SPAF_RS02215 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS02215 PF17866 AAA lid domain SPAF_RS02220 PF02073 Thermophilic metalloprotease (M29) SPAF_RS02225 PF01327 Polypeptide deformylase SPAF_RS02230 PF00027 Cyclic nucleotide-binding domain SPAF_RS02230 PF13545 Crp-like helix-turn-helix domain SPAF_RS02245 PF01479 S4 domain SPAF_RS02245 PF00849 RNA pseudouridylate synthase SPAF_RS02250 PF05738 Cna protein B-type domain SPAF_RS02250 PF05737 Collagen binding domain SPAF_RS02250 PF17802 Prealbumin-like fold domain SPAF_RS02255 PF00312 Ribosomal protein S15 SPAF_RS02275 PF01432 Peptidase family M3 SPAF_RS02275 PF08439 Oligopeptidase F SPAF_RS02300 PF00575 S1 RNA binding domain SPAF_RS02300 PF03725 3' exoribonuclease family, domain 2 SPAF_RS02300 PF00013 KH domain SPAF_RS02300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPAF_RS02300 PF01138 3' exoribonuclease family, domain 1 SPAF_RS02305 PF06426 Serine acetyltransferase, N-terminal SPAF_RS02305 PF00132 Bacterial transferase hexapeptide (six repeats) SPAF_RS02315 PF01406 tRNA synthetases class I (C) catalytic domain SPAF_RS02315 PF09190 DALR domain SPAF_RS02320 PF00636 Ribonuclease III domain SPAF_RS02325 PF13556 PucR C-terminal helix-turn-helix domain SPAF_RS02330 PF03459 TOBE domain SPAF_RS02330 PF17912 MalK OB fold domain SPAF_RS02330 PF00005 ABC transporter SPAF_RS02335 PF00128 Alpha amylase, catalytic domain SPAF_RS02335 PF16657 Maltogenic Amylase, C-terminal domain SPAF_RS02350 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPAF_RS02350 PF00588 SpoU rRNA Methylase family SPAF_RS02355 PF05991 YacP-like NYN domain SPAF_RS02360 PF02645 Uncharacterised protein, DegV family COG1307 SPAF_RS02365 PF00572 Ribosomal protein L13 SPAF_RS02370 PF00380 Ribosomal protein S9/S16 SPAF_RS02375 PF03965 Penicillinase repressor SPAF_RS02390 PF01022 Bacterial regulatory protein, arsR family SPAF_RS02395 PF06736 Protein of unknown function (DUF1211) SPAF_RS02405 PF01381 Helix-turn-helix SPAF_RS02425 PF05532 CsbD-like SPAF_RS02435 PF00107 Zinc-binding dehydrogenase SPAF_RS02435 PF08240 Alcohol dehydrogenase GroES-like domain SPAF_RS02440 PF00440 Bacterial regulatory proteins, tetR family SPAF_RS02440 PF16295 Tetracyclin repressor-like, C-terminal domain SPAF_RS02455 PF05167 Uncharacterised ACR (DUF711) SPAF_RS02470 PF02557 D-alanyl-D-alanine carboxypeptidase SPAF_RS02475 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPAF_RS02475 PF01628 HrcA protein C terminal domain SPAF_RS02480 PF01025 GrpE SPAF_RS02485 PF00012 Hsp70 protein SPAF_RS02495 PF01556 DnaJ C terminal domain SPAF_RS02495 PF00226 DnaJ domain SPAF_RS02495 PF00684 DnaJ central domain SPAF_RS02500 PF00728 Glycosyl hydrolase family 20, catalytic domain SPAF_RS02500 PF00746 LPXTG cell wall anchor motif SPAF_RS02500 PF04650 YSIRK type signal peptide SPAF_RS02500 PF07501 G5 domain SPAF_RS02505 PF01416 tRNA pseudouridine synthase SPAF_RS02510 PF08543 Phosphomethylpyrimidine kinase SPAF_RS02515 PF07155 ECF-type riboflavin transporter, S component SPAF_RS02525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPAF_RS02525 PF05697 Bacterial trigger factor protein (TF) SPAF_RS02525 PF05698 Bacterial trigger factor protein (TF) C-terminus SPAF_RS02530 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPAF_RS02540 PF06418 CTP synthase N-terminus SPAF_RS02540 PF00117 Glutamine amidotransferase class-I SPAF_RS02555 PF01116 Fructose-bisphosphate aldolase class-II SPAF_RS02585 PF00005 ABC transporter SPAF_RS02620 PF17866 AAA lid domain SPAF_RS02620 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS02650 PF00830 Ribosomal L28 family SPAF_RS02655 PF03780 Asp23 family, cell envelope-related function SPAF_RS02660 PF13684 Dihydroxyacetone kinase family SPAF_RS02660 PF02734 DAK2 domain SPAF_RS02675 PF00005 ABC transporter SPAF_RS02685 PF07730 Histidine kinase SPAF_RS02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS02690 PF00072 Response regulator receiver domain SPAF_RS02690 PF00196 Bacterial regulatory proteins, luxR family SPAF_RS02695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPAF_RS02695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPAF_RS02695 PF00205 Thiamine pyrophosphate enzyme, central domain SPAF_RS02700 PF01842 ACT domain SPAF_RS02700 PF10369 Small subunit of acetolactate synthase SPAF_RS02705 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SPAF_RS02705 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SPAF_RS02710 PF00291 Pyridoxal-phosphate dependent enzyme SPAF_RS02710 PF00585 C-terminal regulatory domain of Threonine dehydratase SPAF_RS02725 PF00005 ABC transporter SPAF_RS02730 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02740 PF02673 Bacitracin resistance protein BacA SPAF_RS02745 PF05389 Negative regulator of genetic competence (MecA) SPAF_RS02750 PF00953 Glycosyl transferase family 4 SPAF_RS02755 PF00005 ABC transporter SPAF_RS02760 PF01458 Uncharacterized protein family (UPF0051) SPAF_RS02765 PF00266 Aminotransferase class-V SPAF_RS02770 PF01592 NifU-like N terminal domain SPAF_RS02775 PF01458 Uncharacterized protein family (UPF0051) SPAF_RS02780 PF00768 D-alanyl-D-alanine carboxypeptidase SPAF_RS02780 PF07943 Penicillin-binding protein 5, C-terminal domain SPAF_RS02785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPAF_RS02790 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02795 PF12911 N-terminal TM domain of oligopeptide transport permease C SPAF_RS02795 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS02800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPAF_RS02800 PF00005 ABC transporter SPAF_RS02805 PF00005 ABC transporter SPAF_RS02805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPAF_RS02890 PF04167 Protein of unknown function (DUF402) SPAF_RS02895 PF02631 RecX family SPAF_RS02900 PF01938 TRAM domain SPAF_RS02900 PF05958 tRNA (Uracil-5-)-methyltransferase SPAF_RS02940 PF00958 GMP synthase C terminal domain SPAF_RS02940 PF00117 Glutamine amidotransferase class-I SPAF_RS02940 PF03352 Methyladenine glycosylase SPAF_RS02940 PF13673 Acetyltransferase (GNAT) domain SPAF_RS02940 PF13302 Acetyltransferase (GNAT) domain SPAF_RS02950 PF10458 Valyl tRNA synthetase tRNA binding arm SPAF_RS02950 PF00133 tRNA synthetases class I (I, L, M and V) SPAF_RS02950 PF08264 Anticodon-binding domain of tRNA SPAF_RS02965 PF01926 50S ribosome-binding GTPase SPAF_RS02970 PF01985 CRS1 / YhbY (CRM) domain SPAF_RS02975 PF01467 Cytidylyltransferase-like SPAF_RS02980 PF01966 HD domain SPAF_RS02985 PF00857 Isochorismatase family SPAF_RS02995 PF13649 Methyltransferase domain SPAF_RS03000 PF05636 HIGH Nucleotidyl Transferase SPAF_RS03010 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SPAF_RS03015 PF01709 Transcriptional regulator SPAF_RS03030 PF11799 impB/mucB/samB family C-terminal domain SPAF_RS03030 PF11798 IMS family HHH motif SPAF_RS03030 PF00817 impB/mucB/samB family SPAF_RS03035 PF00717 Peptidase S24-like SPAF_RS03035 PF01726 LexA DNA binding domain SPAF_RS03040 PF03590 Aspartate-ammonia ligase SPAF_RS03050 PF01467 Cytidylyltransferase-like SPAF_RS03055 PF13180 PDZ domain SPAF_RS03055 PF05362 Lon protease (S16) C-terminal proteolytic domain SPAF_RS03060 PF02683 Cytochrome C biogenesis protein transmembrane region SPAF_RS03070 PF08534 Redoxin SPAF_RS03075 PF01641 SelR domain SPAF_RS03075 PF01625 Peptide methionine sulfoxide reductase SPAF_RS03080 PF00072 Response regulator receiver domain SPAF_RS03080 PF12833 Helix-turn-helix domain SPAF_RS03085 PF00672 HAMP domain SPAF_RS03085 PF02743 Cache domain SPAF_RS03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS03085 PF06580 Histidine kinase SPAF_RS03090 PF06265 Protein of unknown function (DUF1027) SPAF_RS03095 PF04055 Radical SAM superfamily SPAF_RS03105 PF00291 Pyridoxal-phosphate dependent enzyme SPAF_RS03110 PF01478 Type IV leader peptidase family SPAF_RS03110 PF06750 Bacterial Peptidase A24 N-terminal domain SPAF_RS03120 PF00581 Rhodanese-like domain SPAF_RS03125 PF00849 RNA pseudouridylate synthase SPAF_RS03125 PF01479 S4 domain SPAF_RS03130 PF00679 Elongation factor G C-terminus SPAF_RS03130 PF14492 Elongation Factor G, domain II SPAF_RS03130 PF00009 Elongation factor Tu GTP binding domain SPAF_RS03130 PF03144 Elongation factor Tu domain 2 SPAF_RS03140 PF08245 Mur ligase middle domain SPAF_RS03140 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS03145 PF04101 Glycosyltransferase family 28 C-terminal domain SPAF_RS03145 PF03033 Glycosyltransferase family 28 N-terminal domain SPAF_RS03150 PF03799 Cell division protein FtsQ SPAF_RS03150 PF08478 POTRA domain, FtsQ-type SPAF_RS03155 PF11983 Membrane-attachment and polymerisation-promoting switch SPAF_RS03155 PF02491 SHS2 domain inserted in FTSA SPAF_RS03160 PF00091 Tubulin/FtsZ family, GTPase domain SPAF_RS03160 PF12327 FtsZ family, C-terminal domain SPAF_RS03165 PF01168 Alanine racemase, N-terminal domain SPAF_RS03170 PF04472 Cell division protein SepF SPAF_RS03185 PF05103 DivIVA protein SPAF_RS03190 PF06827 Zinc finger found in FPG and IleRS SPAF_RS03190 PF00133 tRNA synthetases class I (I, L, M and V) SPAF_RS03190 PF08264 Anticodon-binding domain of tRNA SPAF_RS03200 PF00293 NUDIX domain SPAF_RS03205 PF17871 AAA lid domain SPAF_RS03205 PF10431 C-terminal, D2-small domain, of ClpB protein SPAF_RS03205 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS03205 PF07724 AAA domain (Cdc48 subfamily) SPAF_RS03210 PF08796 Protein of unknown function (DUF1797) SPAF_RS03215 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPAF_RS03215 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPAF_RS03225 PF01256 Carbohydrate kinase SPAF_RS03230 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS03230 PF13407 Periplasmic binding protein domain SPAF_RS03240 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS03245 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS03250 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPAF_RS03250 PF08244 Glycosyl hydrolases family 32 C terminal SPAF_RS03260 PF02601 Exonuclease VII, large subunit SPAF_RS03260 PF13742 OB-fold nucleic acid binding domain SPAF_RS03265 PF02609 Exonuclease VII small subunit SPAF_RS03270 PF00348 Polyprenyl synthetase SPAF_RS03275 PF01728 FtsJ-like methyltransferase SPAF_RS03275 PF01479 S4 domain SPAF_RS03280 PF02863 Arginine repressor, C-terminal domain SPAF_RS03280 PF01316 Arginine repressor, DNA binding domain SPAF_RS03285 PF13476 AAA domain SPAF_RS03290 PF00149 Calcineurin-like phosphoesterase SPAF_RS03295 PF02645 Uncharacterised protein, DegV family COG1307 SPAF_RS03300 PF00216 Bacterial DNA-binding protein SPAF_RS03305 PF01475 Ferric uptake regulator family SPAF_RS03310 PF00300 Histidine phosphatase superfamily (branch 1) SPAF_RS03315 PF09334 tRNA synthetases class I (M) SPAF_RS03315 PF01588 Putative tRNA binding domain SPAF_RS03320 PF13443 Cro/C1-type HTH DNA-binding domain SPAF_RS03335 PF01297 Zinc-uptake complex component A periplasmic SPAF_RS03350 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS03350 PF00072 Response regulator receiver domain SPAF_RS03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS03360 PF00005 ABC transporter SPAF_RS03365 PF02687 FtsX-like permease family SPAF_RS03395 PF11867 Domain of unknown function (DUF3387) SPAF_RS03395 PF18766 SWI2/SNF2 ATPase SPAF_RS03395 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPAF_RS03400 PF12161 HsdM N-terminal domain SPAF_RS03400 PF02384 N-6 DNA Methylase SPAF_RS03405 PF01420 Type I restriction modification DNA specificity domain SPAF_RS03435 PF00056 lactate/malate dehydrogenase, NAD binding domain SPAF_RS03435 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPAF_RS03455 PF07690 Major Facilitator Superfamily SPAF_RS03460 PF02378 Phosphotransferase system, EIIC SPAF_RS03480 PF00005 ABC transporter SPAF_RS03490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPAF_RS03495 PF03551 Transcriptional regulator PadR-like family SPAF_RS03510 PF13520 Amino acid permease SPAF_RS03525 PF00005 ABC transporter SPAF_RS03565 PF00483 Nucleotidyl transferase SPAF_RS03565 PF00132 Bacterial transferase hexapeptide (six repeats) SPAF_RS03565 PF14602 Hexapeptide repeat of succinyl-transferase SPAF_RS03570 PF00293 NUDIX domain SPAF_RS03580 PF01048 Phosphorylase superfamily SPAF_RS03585 PF10576 Iron-sulfur binding domain of endonuclease III SPAF_RS03585 PF00730 HhH-GPD superfamily base excision DNA repair protein SPAF_RS03585 PF00633 Helix-hairpin-helix motif SPAF_RS03590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPAF_RS03600 PF03372 Endonuclease/Exonuclease/phosphatase family SPAF_RS03610 PF04239 Protein of unknown function (DUF421) SPAF_RS03615 PF00905 Penicillin binding protein transpeptidase domain SPAF_RS03615 PF03717 Penicillin-binding Protein dimerisation domain SPAF_RS03620 PF02132 RecR protein SPAF_RS03620 PF13662 Toprim domain SPAF_RS03625 PF01820 D-ala D-ala ligase N-terminus SPAF_RS03625 PF07478 D-ala D-ala ligase C-terminus SPAF_RS03630 PF08245 Mur ligase middle domain SPAF_RS03630 PF01225 Mur ligase family, catalytic domain SPAF_RS03630 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS03635 PF00293 NUDIX domain SPAF_RS03655 PF16658 Class II release factor RF3, C-terminal domain SPAF_RS03655 PF00009 Elongation factor Tu GTP binding domain SPAF_RS03655 PF03144 Elongation factor Tu domain 2 SPAF_RS03660 PF08000 Bacterial PH domain SPAF_RS03675 PF00270 DEAD/DEAH box helicase SPAF_RS03675 PF00271 Helicase conserved C-terminal domain SPAF_RS03680 PF01263 Aldose 1-epimerase SPAF_RS03685 PF01541 GIY-YIG catalytic domain SPAF_RS03690 PF05175 Methyltransferase small domain SPAF_RS03700 PF01553 Acyltransferase SPAF_RS03705 PF10531 SLBB domain SPAF_RS03710 PF00753 Metallo-beta-lactamase superfamily SPAF_RS03710 PF13567 Domain of unknown function (DUF4131) SPAF_RS03710 PF03772 Competence protein SPAF_RS03725 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPAF_RS03725 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPAF_RS03730 PF05872 Bacterial protein of unknown function (DUF853) SPAF_RS03750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPAF_RS03750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPAF_RS03755 PF00696 Amino acid kinase family SPAF_RS03760 PF03606 C4-dicarboxylate anaerobic carrier SPAF_RS03765 PF01546 Peptidase family M20/M25/M40 SPAF_RS03770 PF01316 Arginine repressor, DNA binding domain SPAF_RS03770 PF02863 Arginine repressor, C-terminal domain SPAF_RS03775 PF02547 Queuosine biosynthesis protein SPAF_RS03780 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPAF_RS03785 PF07943 Penicillin-binding protein 5, C-terminal domain SPAF_RS03785 PF00768 D-alanyl-D-alanine carboxypeptidase SPAF_RS03805 PF01432 Peptidase family M3 SPAF_RS03805 PF08439 Oligopeptidase F SPAF_RS03810 PF01596 O-methyltransferase SPAF_RS03815 PF13145 PPIC-type PPIASE domain SPAF_RS03825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPAF_RS03825 PF01411 tRNA synthetases class II (A) SPAF_RS03825 PF02272 DHHA1 domain SPAF_RS03830 PF00268 Ribonucleotide reductase, small chain SPAF_RS03835 PF08343 Ribonucleotide reductase N-terminal SPAF_RS03835 PF00317 Ribonucleotide reductase, all-alpha domain SPAF_RS03835 PF02867 Ribonucleotide reductase, barrel domain SPAF_RS03840 PF00462 Glutaredoxin SPAF_RS03845 PF00381 PTS HPr component phosphorylation site SPAF_RS03850 PF02896 PEP-utilising enzyme, TIM barrel domain SPAF_RS03850 PF00391 PEP-utilising enzyme, mobile domain SPAF_RS03850 PF05524 PEP-utilising enzyme, N-terminal SPAF_RS03855 PF00128 Alpha amylase, catalytic domain SPAF_RS03855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPAF_RS03855 PF02806 Alpha amylase, C-terminal all-beta domain SPAF_RS03860 PF00483 Nucleotidyl transferase SPAF_RS03865 PF00483 Nucleotidyl transferase SPAF_RS03870 PF00534 Glycosyl transferases group 1 SPAF_RS03870 PF08323 Starch synthase catalytic domain SPAF_RS03875 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPAF_RS03875 PF00746 LPXTG cell wall anchor motif SPAF_RS03875 PF07501 G5 domain SPAF_RS03875 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPAF_RS03880 PF00137 ATP synthase subunit C SPAF_RS03885 PF00119 ATP synthase A chain SPAF_RS03890 PF00430 ATP synthase B/B' CF(0) SPAF_RS03895 PF00213 ATP synthase delta (OSCP) subunit SPAF_RS03900 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPAF_RS03900 PF00306 ATP synthase alpha/beta chain, C terminal domain SPAF_RS03900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPAF_RS03905 PF00231 ATP synthase SPAF_RS03910 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPAF_RS03910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPAF_RS03915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPAF_RS03915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPAF_RS03925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPAF_RS03930 PF11772 DNA-directed RNA polymerase subunit beta SPAF_RS03935 PF01223 DNA/RNA non-specific endonuclease SPAF_RS03945 PF00005 ABC transporter SPAF_RS03945 PF12848 ABC transporter SPAF_RS03945 PF16326 ABC transporter C-terminal domain SPAF_RS03960 PF00083 Sugar (and other) transporter SPAF_RS03975 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPAF_RS03980 PF08245 Mur ligase middle domain SPAF_RS03980 PF08353 Domain of unknown function (DUF1727) SPAF_RS03985 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPAF_RS03995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPAF_RS03995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPAF_RS03995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPAF_RS03995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPAF_RS04000 PF01926 50S ribosome-binding GTPase SPAF_RS04000 PF09269 Domain of unknown function (DUF1967) SPAF_RS04000 PF01018 GTP1/OBG SPAF_RS04010 PF01042 Endoribonuclease L-PSP SPAF_RS04015 PF03668 P-loop ATPase protein family SPAF_RS04020 PF01933 Uncharacterised protein family UPF0052 SPAF_RS04025 PF02650 WhiA C-terminal HTH domain SPAF_RS04025 PF14527 WhiA LAGLIDADG-like domain SPAF_RS04025 PF10298 WhiA N-terminal LAGLIDADG-like domain SPAF_RS04030 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS04035 PF01165 Ribosomal protein S21 SPAF_RS04040 PF01741 Large-conductance mechanosensitive channel, MscL SPAF_RS04045 PF10410 DnaB-helicase binding domain of primase SPAF_RS04045 PF08275 DNA primase catalytic core, N-terminal domain SPAF_RS04045 PF01807 CHC2 zinc finger SPAF_RS04050 PF04542 Sigma-70 region 2 SPAF_RS04050 PF04545 Sigma-70, region 4 SPAF_RS04050 PF04539 Sigma-70 region 3 SPAF_RS04050 PF00140 Sigma-70 factor, region 1.2 SPAF_RS04050 PF03979 Sigma-70 factor, region 1.1 SPAF_RS04055 PF01883 Iron-sulfur cluster assembly protein SPAF_RS04060 PF00005 ABC transporter SPAF_RS04075 PF01336 OB-fold nucleic acid binding domain SPAF_RS04075 PF02811 PHP domain SPAF_RS04075 PF14579 Helix-hairpin-helix motif SPAF_RS04075 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPAF_RS04075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPAF_RS04080 PF00365 Phosphofructokinase SPAF_RS04085 PF00224 Pyruvate kinase, barrel domain SPAF_RS04085 PF02887 Pyruvate kinase, alpha/beta domain SPAF_RS04095 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS04100 PF00005 ABC transporter SPAF_RS04105 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPAF_RS04110 PF01545 Cation efflux family SPAF_RS04110 PF16916 Dimerisation domain of Zinc Transporter SPAF_RS04135 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS04135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPAF_RS04140 PF16198 tRNA pseudouridylate synthase B C-terminal domain SPAF_RS04140 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPAF_RS04145 PF01687 Riboflavin kinase SPAF_RS04145 PF06574 FAD synthetase SPAF_RS04150 PF03960 ArsC family SPAF_RS04155 PF05256 Uncharacterised protein family (UPF0223) SPAF_RS04160 PF00459 Inositol monophosphatase family SPAF_RS04165 PF01189 16S rRNA methyltransferase RsmB/F SPAF_RS04165 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SPAF_RS04165 PF17126 RsmF rRNA methyltransferase first C-terminal domain SPAF_RS04170 PF12849 PBP superfamily domain SPAF_RS04175 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS04180 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS04185 PF00005 ABC transporter SPAF_RS04190 PF00005 ABC transporter SPAF_RS04195 PF01895 PhoU domain SPAF_RS04200 PF01433 Peptidase family M1 domain SPAF_RS04200 PF11838 ERAP1-like C-terminal domain SPAF_RS04210 PF04397 LytTr DNA-binding domain SPAF_RS04210 PF00072 Response regulator receiver domain SPAF_RS04215 PF00005 ABC transporter SPAF_RS04225 PF02632 BioY family SPAF_RS04235 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS04235 PF00072 Response regulator receiver domain SPAF_RS04240 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS04245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPAF_RS04250 PF01522 Polysaccharide deacetylase SPAF_RS04250 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SPAF_RS04255 PF00271 Helicase conserved C-terminal domain SPAF_RS04255 PF00270 DEAD/DEAH box helicase SPAF_RS04260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPAF_RS04265 PF00535 Glycosyl transferase family 2 SPAF_RS04270 PF04321 RmlD substrate binding domain SPAF_RS04280 PF00535 Glycosyl transferase family 2 SPAF_RS04285 PF00535 Glycosyl transferase family 2 SPAF_RS04305 PF00535 Glycosyl transferase family 2 SPAF_RS04315 PF14524 Wzt C-terminal domain SPAF_RS04315 PF00005 ABC transporter SPAF_RS04320 PF00535 Glycosyl transferase family 2 SPAF_RS04335 PF00884 Sulfatase SPAF_RS04350 PF02224 Cytidylate kinase SPAF_RS04355 PF05198 Translation initiation factor IF-3, N-terminal domain SPAF_RS04355 PF00707 Translation initiation factor IF-3, C-terminal domain SPAF_RS04360 PF01632 Ribosomal protein L35 SPAF_RS04365 PF00453 Ribosomal protein L20 SPAF_RS04370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPAF_RS04375 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPAF_RS04375 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPAF_RS04375 PF02772 S-adenosylmethionine synthetase, central domain SPAF_RS04380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPAF_RS04385 PF13302 Acetyltransferase (GNAT) domain SPAF_RS04390 PF07085 DRTGG domain SPAF_RS04390 PF00392 Bacterial regulatory proteins, gntR family SPAF_RS04390 PF00571 CBS domain SPAF_RS04390 PF03061 Thioesterase superfamily SPAF_RS04395 PF00557 Metallopeptidase family M24 SPAF_RS04405 PF01047 MarR family SPAF_RS04420 PF06177 QueT transporter SPAF_RS04425 PF12826 Helix-hairpin-helix motif SPAF_RS04425 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPAF_RS04425 PF00533 BRCA1 C Terminus (BRCT) domain SPAF_RS04425 PF01653 NAD-dependent DNA ligase adenylation domain SPAF_RS04425 PF03120 NAD-dependent DNA ligase OB-fold domain SPAF_RS04430 PF00781 Diacylglycerol kinase catalytic domain SPAF_RS04435 PF00128 Alpha amylase, catalytic domain SPAF_RS04435 PF17999 Pullulanase N1-terminal domain SPAF_RS04435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPAF_RS04440 PF00884 Sulfatase SPAF_RS04445 PF10672 S-adenosylmethionine-dependent methyltransferase SPAF_RS04445 PF17785 PUA-like domain SPAF_RS04450 PF01487 Type I 3-dehydroquinase SPAF_RS04455 PF08501 Shikimate dehydrogenase substrate binding domain SPAF_RS04455 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPAF_RS04460 PF01761 3-dehydroquinate synthase SPAF_RS04465 PF01264 Chorismate synthase SPAF_RS04470 PF02153 Prephenate dehydrogenase SPAF_RS04475 PF06133 Control of competence regulator ComK, YlbF/YmcA SPAF_RS04480 PF07690 Major Facilitator Superfamily SPAF_RS04485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPAF_RS04485 PF08501 Shikimate dehydrogenase substrate binding domain SPAF_RS04490 PF07690 Major Facilitator Superfamily SPAF_RS04495 PF01487 Type I 3-dehydroquinase SPAF_RS04500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SPAF_RS04505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPAF_RS04510 PF01202 Shikimate kinase SPAF_RS04515 PF00800 Prephenate dehydratase SPAF_RS04520 PF03816 Cell envelope-related transcriptional attenuator domain SPAF_RS04525 PF05958 tRNA (Uracil-5-)-methyltransferase SPAF_RS04580 PF00005 ABC transporter SPAF_RS04580 PF00664 ABC transporter transmembrane region SPAF_RS04600 PF00005 ABC transporter SPAF_RS04605 PF13411 MerR HTH family regulatory protein SPAF_RS04635 PF01381 Helix-turn-helix SPAF_RS04660 PF02661 Fic/DOC family SPAF_RS04665 PF00128 Alpha amylase, catalytic domain SPAF_RS04665 PF02903 Alpha amylase, N-terminal ig-like domain SPAF_RS04675 PF00293 NUDIX domain SPAF_RS04675 PF13344 Haloacid dehalogenase-like hydrolase SPAF_RS04720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPAF_RS04720 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPAF_RS04725 PF00106 short chain dehydrogenase SPAF_RS04730 PF01197 Ribosomal protein L31 SPAF_RS04740 PF01368 DHH family SPAF_RS04740 PF02272 DHHA1 domain SPAF_RS04770 PF00258 Flavodoxin SPAF_RS04780 PF00654 Voltage gated chloride channel SPAF_RS04785 PF01245 Ribosomal protein L19 SPAF_RS04825 PF01926 50S ribosome-binding GTPase SPAF_RS04825 PF12631 MnmE helical domain SPAF_RS04825 PF10396 GTP-binding protein TrmE N-terminus SPAF_RS04835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPAF_RS04840 PF01676 Metalloenzyme superfamily SPAF_RS04850 PF01048 Phosphorylase superfamily SPAF_RS04855 PF00654 Voltage gated chloride channel SPAF_RS04860 PF00117 Glutamine amidotransferase class-I SPAF_RS04865 PF01048 Phosphorylase superfamily SPAF_RS04875 PF02146 Sir2 family SPAF_RS04880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPAF_RS04880 PF03466 LysR substrate binding domain SPAF_RS04890 PF00175 Oxidoreductase NAD-binding domain SPAF_RS04890 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SPAF_RS04890 PF00970 Oxidoreductase FAD-binding domain SPAF_RS04895 PF01180 Dihydroorotate dehydrogenase SPAF_RS04900 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPAF_RS04905 PF00156 Phosphoribosyl transferase domain SPAF_RS04915 PF03167 Uracil DNA glycosylase superfamily SPAF_RS04920 PF00293 NUDIX domain SPAF_RS04925 PF01979 Amidohydrolase family SPAF_RS04930 PF13472 GDSL-like Lipase/Acylhydrolase family SPAF_RS04940 PF08502 LeuA allosteric (dimerisation) domain SPAF_RS04940 PF00682 HMGL-like SPAF_RS04945 PF00180 Isocitrate/isopropylmalate dehydrogenase SPAF_RS04955 PF00330 Aconitase family (aconitate hydratase) SPAF_RS04960 PF00694 Aconitase C-terminal domain SPAF_RS04970 PF02660 Glycerol-3-phosphate acyltransferase SPAF_RS04975 PF01751 Toprim domain SPAF_RS04975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS04975 PF00204 DNA gyrase B SPAF_RS04975 PF00986 DNA gyrase B subunit, carboxyl terminus SPAF_RS04980 PF04439 Streptomycin adenylyltransferase SPAF_RS04985 PF03989 DNA gyrase C-terminal domain, beta-propeller SPAF_RS04985 PF00521 DNA gyrase/topoisomerase IV, subunit A SPAF_RS04990 PF01063 Amino-transferase class IV SPAF_RS05010 PF00575 S1 RNA binding domain SPAF_RS05025 PF00056 lactate/malate dehydrogenase, NAD binding domain SPAF_RS05025 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPAF_RS05030 PF00521 DNA gyrase/topoisomerase IV, subunit A SPAF_RS05030 PF03989 DNA gyrase C-terminal domain, beta-propeller SPAF_RS05035 PF04203 Sortase domain SPAF_RS05045 PF04002 RadC-like JAB domain SPAF_RS05055 PF02629 CoA binding domain SPAF_RS05055 PF06971 Putative DNA-binding protein N-terminus SPAF_RS05070 PF00266 Aminotransferase class-V SPAF_RS05075 PF14572 Phosphoribosyl synthetase-associated domain SPAF_RS05075 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPAF_RS05080 PF01928 CYTH domain SPAF_RS05085 PF04607 Region found in RelA / SpoT proteins SPAF_RS05090 PF01513 ATP-NAD kinase SPAF_RS05095 PF00849 RNA pseudouridylate synthase SPAF_RS05100 PF01515 Phosphate acetyl/butaryl transferase SPAF_RS05105 PF13333 Integrase core domain SPAF_RS05105 PF00665 Integrase core domain SPAF_RS05115 PF14815 NUDIX domain SPAF_RS05115 PF00730 HhH-GPD superfamily base excision DNA repair protein SPAF_RS05125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPAF_RS05125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPAF_RS05125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPAF_RS05125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPAF_RS05130 PF12822 ECF transporter, substrate-specific component SPAF_RS05135 PF02441 Flavoprotein SPAF_RS05145 PF01268 Formate--tetrahydrofolate ligase SPAF_RS05150 PF01554 MatE SPAF_RS05165 PF05525 Branched-chain amino acid transport protein SPAF_RS05170 PF02683 Cytochrome C biogenesis protein transmembrane region SPAF_RS05180 PF00890 FAD binding domain SPAF_RS05180 PF04205 FMN-binding domain SPAF_RS05180 PF03358 NADPH-dependent FMN reductase SPAF_RS05185 PF03358 NADPH-dependent FMN reductase SPAF_RS05185 PF04205 FMN-binding domain SPAF_RS05185 PF00890 FAD binding domain SPAF_RS05190 PF02424 ApbE family SPAF_RS05195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPAF_RS05195 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS05200 PF00654 Voltage gated chloride channel SPAF_RS05205 PF09375 Imelysin SPAF_RS05210 PF04261 Dyp-type peroxidase family SPAF_RS05210 PF10518 TAT (twin-arginine translocation) pathway signal sequence SPAF_RS05215 PF03239 Iron permease FTR1 family SPAF_RS05220 PF00902 Sec-independent protein translocase protein (TatC) SPAF_RS05225 PF02416 mttA/Hcf106 family SPAF_RS05235 PF00478 IMP dehydrogenase / GMP reductase domain SPAF_RS05240 PF00156 Phosphoribosyl transferase domain SPAF_RS05245 PF00860 Permease family SPAF_RS05250 PF01554 MatE SPAF_RS05255 PF00920 Dehydratase family SPAF_RS05260 PF01361 Tautomerase enzyme SPAF_RS05265 PF00265 Thymidine kinase SPAF_RS05270 PF03462 PCRF domain SPAF_RS05270 PF00472 RF-1 domain SPAF_RS05275 PF05175 Methyltransferase small domain SPAF_RS05285 PF00464 Serine hydroxymethyltransferase SPAF_RS05305 PF00117 Glutamine amidotransferase class-I SPAF_RS05305 PF02540 NAD synthase SPAF_RS05305 PF00958 GMP synthase C terminal domain SPAF_RS05310 PF07702 UTRA domain SPAF_RS05310 PF00392 Bacterial regulatory proteins, gntR family SPAF_RS05320 PF01370 NAD dependent epimerase/dehydratase family SPAF_RS05335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPAF_RS05335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPAF_RS05340 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPAF_RS05345 PF02978 Signal peptide binding domain SPAF_RS05345 PF02881 SRP54-type protein, helical bundle domain SPAF_RS05345 PF00448 SRP54-type protein, GTPase domain SPAF_RS05355 PF05448 Acetyl xylan esterase (AXE1) SPAF_RS05390 PF00589 Phage integrase family SPAF_RS05395 PF09383 NIL domain SPAF_RS05395 PF00005 ABC transporter SPAF_RS05405 PF10437 Bacterial lipoate protein ligase C-terminus SPAF_RS05405 PF03099 Biotin/lipoate A/B protein ligase family SPAF_RS05410 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS05410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPAF_RS05415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPAF_RS05415 PF02817 e3 binding domain SPAF_RS05415 PF00364 Biotin-requiring enzyme SPAF_RS05420 PF02779 Transketolase, pyrimidine binding domain SPAF_RS05420 PF02780 Transketolase, C-terminal domain SPAF_RS05425 PF00676 Dehydrogenase E1 component SPAF_RS05445 PF01134 Glucose inhibited division protein A SPAF_RS05460 PF01751 Toprim domain SPAF_RS05460 PF01131 DNA topoisomerase SPAF_RS05460 PF01396 Topoisomerase DNA binding C4 zinc finger SPAF_RS05465 PF18255 DNA processing protein A sterile alpha motif domain SPAF_RS05465 PF02481 DNA recombination-mediator protein A SPAF_RS05470 PF00480 ROK family SPAF_RS05475 PF01351 Ribonuclease HII SPAF_RS05480 PF01926 50S ribosome-binding GTPase SPAF_RS05490 PF00701 Dihydrodipicolinate synthetase family SPAF_RS05495 PF01118 Semialdehyde dehydrogenase, NAD binding domain SPAF_RS05495 PF02774 Semialdehyde dehydrogenase, dimerisation domain SPAF_RS05515 PF13091 PLD-like domain SPAF_RS05525 PF00664 ABC transporter transmembrane region SPAF_RS05525 PF00005 ABC transporter SPAF_RS05530 PF00005 ABC transporter SPAF_RS05530 PF00664 ABC transporter transmembrane region SPAF_RS05550 PF02899 Phage integrase, N-terminal SAM-like domain SPAF_RS05550 PF00589 Phage integrase family SPAF_RS05560 PF01381 Helix-turn-helix SPAF_RS05575 PF00005 ABC transporter SPAF_RS05580 PF00072 Response regulator receiver domain SPAF_RS05580 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS05590 PF03432 Relaxase/Mobilisation nuclease domain SPAF_RS05610 PF06414 Zeta toxin SPAF_RS05615 PF01381 Helix-turn-helix SPAF_RS05655 PF00005 ABC transporter SPAF_RS05665 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS05665 PF00072 Response regulator receiver domain SPAF_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS05670 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS05700 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS05705 PF00072 Response regulator receiver domain SPAF_RS05705 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS05720 PF00005 ABC transporter SPAF_RS05795 PF00145 C-5 cytosine-specific DNA methylase SPAF_RS05800 PF18008 Replication initiator protein A C-terminal domain SPAF_RS05800 PF06970 Replication initiator protein A (RepA) N-terminus SPAF_RS05810 PF16320 Ribosomal protein L7/L12 dimerisation domain SPAF_RS05810 PF00542 Ribosomal protein L7/L12 C-terminal domain SPAF_RS05815 PF00466 Ribosomal protein L10 SPAF_RS05825 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPAF_RS05825 PF01476 LysM domain SPAF_RS05830 PF01926 50S ribosome-binding GTPase SPAF_RS05835 PF06689 ClpX C4-type zinc finger SPAF_RS05835 PF10431 C-terminal, D2-small domain, of ClpB protein SPAF_RS05835 PF07724 AAA domain (Cdc48 subfamily) SPAF_RS05845 PF00186 Dihydrofolate reductase SPAF_RS05850 PF00303 Thymidylate synthase SPAF_RS05855 PF00480 ROK family SPAF_RS05865 PF00005 ABC transporter SPAF_RS05865 PF12848 ABC transporter SPAF_RS05865 PF16326 ABC transporter C-terminal domain SPAF_RS05870 PF01743 Poly A polymerase head domain SPAF_RS05870 PF12627 Probable RNA and SrmB- binding site of polymerase A SPAF_RS05870 PF13735 tRNA nucleotidyltransferase domain 2 putative SPAF_RS05875 PF05173 Dihydrodipicolinate reductase, C-terminus SPAF_RS05875 PF01113 Dihydrodipicolinate reductase, N-terminus SPAF_RS05880 PF02645 Uncharacterised protein, DegV family COG1307 SPAF_RS05900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPAF_RS05900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPAF_RS05905 PF00294 pfkB family carbohydrate kinase SPAF_RS05910 PF08220 DeoR-like helix-turn-helix domain SPAF_RS05910 PF00455 DeoR C terminal sensor domain SPAF_RS05920 PF01746 tRNA (Guanine-1)-methyltransferase SPAF_RS05925 PF01782 RimM N-terminal domain SPAF_RS05925 PF05239 PRC-barrel domain SPAF_RS05935 PF00886 Ribosomal protein S16 SPAF_RS05940 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS05955 PF06421 GTP-binding protein LepA C-terminus SPAF_RS05955 PF03144 Elongation factor Tu domain 2 SPAF_RS05955 PF00009 Elongation factor Tu GTP binding domain SPAF_RS05955 PF00679 Elongation factor G C-terminus SPAF_RS05960 PF13673 Acetyltransferase (GNAT) domain SPAF_RS05975 PF01546 Peptidase family M20/M25/M40 SPAF_RS05975 PF07687 Peptidase dimerisation domain SPAF_RS05980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPAF_RS05980 PF02142 MGS-like domain SPAF_RS05980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPAF_RS05985 PF00117 Glutamine amidotransferase class-I SPAF_RS05985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPAF_RS05990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPAF_RS05990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPAF_RS05995 PF00156 Phosphoribosyl transferase domain SPAF_RS06005 PF08274 PhnA Zinc-Ribbon SPAF_RS06005 PF03831 PhnA domain SPAF_RS06020 PF00293 NUDIX domain SPAF_RS06035 PF00145 C-5 cytosine-specific DNA methylase SPAF_RS06050 PF02525 Flavodoxin-like fold SPAF_RS06060 PF17757 UvrB interaction domain SPAF_RS06060 PF12344 Ultra-violet resistance protein B SPAF_RS06060 PF02151 UvrB/uvrC motif SPAF_RS06060 PF04851 Type III restriction enzyme, res subunit SPAF_RS06060 PF00271 Helicase conserved C-terminal domain SPAF_RS06070 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06075 PF00005 ABC transporter SPAF_RS06080 PF00005 ABC transporter SPAF_RS06080 PF00664 ABC transporter transmembrane region SPAF_RS06085 PF00664 ABC transporter transmembrane region SPAF_RS06085 PF00005 ABC transporter SPAF_RS06100 PF01336 OB-fold nucleic acid binding domain SPAF_RS06100 PF00152 tRNA synthetases class II (D, K and N) SPAF_RS06105 PF00155 Aminotransferase class I and II SPAF_RS06115 PF01047 MarR family SPAF_RS06120 PF01797 Transposase IS200 like SPAF_RS06125 PF03883 Peroxide stress protein YaaA SPAF_RS06135 PF03006 Haemolysin-III related SPAF_RS06140 PF00392 Bacterial regulatory proteins, gntR family SPAF_RS06140 PF00155 Aminotransferase class I and II SPAF_RS06150 PF00664 ABC transporter transmembrane region SPAF_RS06150 PF00005 ABC transporter SPAF_RS06155 PF00005 ABC transporter SPAF_RS06155 PF00664 ABC transporter transmembrane region SPAF_RS06160 PF04237 YjbR SPAF_RS06165 PF03932 CutC family SPAF_RS06175 PF02653 Branched-chain amino acid transport system / permease component SPAF_RS06180 PF02653 Branched-chain amino acid transport system / permease component SPAF_RS06185 PF00005 ABC transporter SPAF_RS06190 PF02608 ABC transporter substrate-binding protein PnrA-like SPAF_RS06195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPAF_RS06200 PF01791 DeoC/LacD family aldolase SPAF_RS06205 PF00591 Glycosyl transferase family, a/b domain SPAF_RS06205 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SPAF_RS06205 PF02885 Glycosyl transferase family, helical bundle domain SPAF_RS06210 PF05175 Methyltransferase small domain SPAF_RS06215 PF00485 Phosphoribulokinase / Uridine kinase family SPAF_RS06220 PF01649 Ribosomal protein S20 SPAF_RS06225 PF01202 Shikimate kinase SPAF_RS06255 PF03167 Uracil DNA glycosylase superfamily SPAF_RS06260 PF01546 Peptidase family M20/M25/M40 SPAF_RS06265 PF00881 Nitroreductase family SPAF_RS06275 PF02151 UvrB/uvrC motif SPAF_RS06275 PF01541 GIY-YIG catalytic domain SPAF_RS06275 PF08459 UvrC Helix-hairpin-helix N-terminal SPAF_RS06290 PF13344 Haloacid dehalogenase-like hydrolase SPAF_RS06305 PF04055 Radical SAM superfamily SPAF_RS06305 PF06969 HemN C-terminal domain SPAF_RS06310 PF12848 ABC transporter SPAF_RS06310 PF16326 ABC transporter C-terminal domain SPAF_RS06310 PF00005 ABC transporter SPAF_RS06315 PF03807 NADP oxidoreductase coenzyme F420-dependent SPAF_RS06315 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPAF_RS06320 PF00171 Aldehyde dehydrogenase family SPAF_RS06325 PF00696 Amino acid kinase family SPAF_RS06325 PF01472 PUA domain SPAF_RS06330 PF01479 S4 domain SPAF_RS06330 PF00849 RNA pseudouridylate synthase SPAF_RS06335 PF01252 Signal peptidase (SPase) II SPAF_RS06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPAF_RS06340 PF03466 LysR substrate binding domain SPAF_RS06345 PF00232 Glycosyl hydrolase family 1 SPAF_RS06350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPAF_RS06350 PF02378 Phosphotransferase system, EIIC SPAF_RS06355 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPAF_RS06360 PF03123 CAT RNA binding domain SPAF_RS06360 PF00874 PRD domain SPAF_RS06365 PF01791 DeoC/LacD family aldolase SPAF_RS06370 PF00294 pfkB family carbohydrate kinase SPAF_RS06375 PF02502 Ribose/Galactose Isomerase SPAF_RS06380 PF02502 Ribose/Galactose Isomerase SPAF_RS06385 PF03611 PTS system sugar-specific permease component SPAF_RS06400 PF08220 DeoR-like helix-turn-helix domain SPAF_RS06400 PF00455 DeoR C terminal sensor domain SPAF_RS06405 PF01016 Ribosomal L27 protein SPAF_RS06415 PF00829 Ribosomal prokaryotic L21 protein SPAF_RS06420 PF06874 Firmicute fructose-1,6-bisphosphatase SPAF_RS06425 PF03618 Kinase/pyrophosphorylase SPAF_RS06430 PF08279 HTH domain SPAF_RS06430 PF00571 CBS domain SPAF_RS06435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SPAF_RS06435 PF02896 PEP-utilising enzyme, TIM barrel domain SPAF_RS06435 PF00391 PEP-utilising enzyme, mobile domain SPAF_RS06440 PF02926 THUMP domain SPAF_RS06440 PF02568 Thiamine biosynthesis protein (ThiI) SPAF_RS06445 PF00266 Aminotransferase class-V SPAF_RS06475 PF13416 Bacterial extracellular solute-binding protein SPAF_RS06480 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06485 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06490 PF08402 TOBE domain SPAF_RS06490 PF00005 ABC transporter SPAF_RS06495 PF01565 FAD binding domain SPAF_RS06495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPAF_RS06505 PF08544 GHMP kinases C terminal SPAF_RS06505 PF00288 GHMP kinases N terminal domain SPAF_RS06510 PF03447 Homoserine dehydrogenase, NAD binding domain SPAF_RS06510 PF00742 Homoserine dehydrogenase SPAF_RS06520 PF01966 HD domain SPAF_RS06530 PF02645 Uncharacterised protein, DegV family COG1307 SPAF_RS06540 PF00005 ABC transporter SPAF_RS06545 PF01546 Peptidase family M20/M25/M40 SPAF_RS06550 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPAF_RS06550 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPAF_RS06550 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPAF_RS06555 PF00128 Alpha amylase, catalytic domain SPAF_RS06555 PF09154 Domain of unknown function (DUF1939) SPAF_RS06560 PF00085 Thioredoxin SPAF_RS06565 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPAF_RS06565 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPAF_RS06565 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPAF_RS06570 PF14698 Argininosuccinate lyase C-terminal SPAF_RS06570 PF00206 Lyase SPAF_RS06575 PF00764 Arginosuccinate synthase SPAF_RS06580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPAF_RS06585 PF05343 M42 glutamyl aminopeptidase SPAF_RS06630 PF00005 ABC transporter SPAF_RS06640 PF01370 NAD dependent epimerase/dehydratase family SPAF_RS06645 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPAF_RS06645 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPAF_RS06650 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS06655 PF08544 GHMP kinases C terminal SPAF_RS06655 PF00288 GHMP kinases N terminal domain SPAF_RS06655 PF10509 Galactokinase galactose-binding signature SPAF_RS06660 PF00933 Glycosyl hydrolase family 3 N terminal domain SPAF_RS06660 PF01915 Glycosyl hydrolase family 3 C-terminal domain SPAF_RS06665 PF00128 Alpha amylase, catalytic domain SPAF_RS06670 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06675 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06680 PF01547 Bacterial extracellular solute-binding protein SPAF_RS06685 PF16874 Glycosyl hydrolase family 36 C-terminal domain SPAF_RS06685 PF16875 Glycosyl hydrolase family 36 N-terminal domain SPAF_RS06690 PF02311 AraC-like ligand binding domain SPAF_RS06690 PF12833 Helix-turn-helix domain SPAF_RS06695 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS06705 PF01501 Glycosyl transferase family 8 SPAF_RS06705 PF00535 Glycosyl transferase family 2 SPAF_RS06710 PF00672 HAMP domain SPAF_RS06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS06710 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS06715 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS06715 PF00072 Response regulator receiver domain SPAF_RS06725 PF00005 ABC transporter SPAF_RS06745 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06750 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS06755 PF06580 Histidine kinase SPAF_RS06755 PF07694 5TMR of 5TMR-LYT SPAF_RS06760 PF02805 Metal binding domain of Ada SPAF_RS06760 PF12833 Helix-turn-helix domain SPAF_RS06770 PF12169 DNA polymerase III subunits gamma and tau domain III SPAF_RS06785 PF00485 Phosphoribulokinase / Uridine kinase family SPAF_RS06795 PF00890 FAD binding domain SPAF_RS06795 PF04205 FMN-binding domain SPAF_RS06795 PF03358 NADPH-dependent FMN reductase SPAF_RS06800 PF04205 FMN-binding domain SPAF_RS06800 PF03358 NADPH-dependent FMN reductase SPAF_RS06800 PF00890 FAD binding domain SPAF_RS06805 PF07690 Major Facilitator Superfamily SPAF_RS06810 PF12833 Helix-turn-helix domain SPAF_RS06810 PF06719 AraC-type transcriptional regulator N-terminus SPAF_RS06820 PF16363 GDP-mannose 4,6 dehydratase SPAF_RS06825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SPAF_RS06830 PF00483 Nucleotidyl transferase SPAF_RS06840 PF01266 FAD dependent oxidoreductase SPAF_RS06850 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SPAF_RS06855 PF02798 Glutathione S-transferase, N-terminal domain SPAF_RS06860 PF00962 Adenosine/AMP deaminase SPAF_RS06875 PF04204 Homoserine O-succinyltransferase SPAF_RS06880 PF00156 Phosphoribosyl transferase domain SPAF_RS06895 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SPAF_RS06895 PF17768 RecJ OB domain SPAF_RS06895 PF02272 DHHA1 domain SPAF_RS06895 PF01368 DHH family SPAF_RS06910 PF00106 short chain dehydrogenase SPAF_RS06915 PF12706 Beta-lactamase superfamily domain SPAF_RS06915 PF00753 Metallo-beta-lactamase superfamily SPAF_RS06925 PF13167 GTP-binding GTPase N-terminal SPAF_RS06925 PF01926 50S ribosome-binding GTPase SPAF_RS06925 PF16360 GTP-binding GTPase Middle Region SPAF_RS06940 PF12705 PD-(D/E)XK nuclease superfamily SPAF_RS06940 PF00580 UvrD/REP helicase N-terminal domain SPAF_RS06940 PF13361 UvrD-like helicase C-terminal domain SPAF_RS06945 PF12705 PD-(D/E)XK nuclease superfamily SPAF_RS06950 PF00255 Glutathione peroxidase SPAF_RS06965 PF00664 ABC transporter transmembrane region SPAF_RS06965 PF00005 ABC transporter SPAF_RS06970 PF00664 ABC transporter transmembrane region SPAF_RS06970 PF00005 ABC transporter SPAF_RS06990 PF00005 ABC transporter SPAF_RS07000 PF00248 Aldo/keto reductase family SPAF_RS07030 PF00005 ABC transporter SPAF_RS07030 PF13732 Domain of unknown function (DUF4162) SPAF_RS07040 PF01381 Helix-turn-helix SPAF_RS07060 PF07664 Ferrous iron transport protein B C terminus SPAF_RS07060 PF17910 FeoB cytosolic helical domain SPAF_RS07060 PF02421 Ferrous iron transport protein B SPAF_RS07060 PF07670 Nucleoside recognition SPAF_RS07065 PF01588 Putative tRNA binding domain SPAF_RS07065 PF03483 B3/4 domain SPAF_RS07065 PF03147 Ferredoxin-fold anticodon binding domain SPAF_RS07065 PF03484 tRNA synthetase B5 domain SPAF_RS07065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SPAF_RS07070 PF13673 Acetyltransferase (GNAT) domain SPAF_RS07075 PF01409 tRNA synthetases class II core domain (F) SPAF_RS07075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPAF_RS07090 PF05670 NFACT protein RNA binding domain SPAF_RS07095 PF03306 Alpha-acetolactate decarboxylase SPAF_RS07105 PF01594 AI-2E family transporter SPAF_RS07110 PF10282 Lactonase, 7-bladed beta-propeller SPAF_RS07120 PF03952 Enolase, N-terminal domain SPAF_RS07120 PF00113 Enolase, C-terminal TIM barrel domain SPAF_RS07130 PF02595 Glycerate kinase family SPAF_RS07140 PF06160 Septation ring formation regulator, EzrA SPAF_RS07145 PF01751 Toprim domain SPAF_RS07145 PF00986 DNA gyrase B subunit, carboxyl terminus SPAF_RS07145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS07145 PF00204 DNA gyrase B SPAF_RS07150 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS07160 PF01098 Cell cycle protein SPAF_RS07165 PF03601 Conserved hypothetical protein 698 SPAF_RS07170 PF13307 Helicase C-terminal domain SPAF_RS07170 PF04851 Type III restriction enzyme, res subunit SPAF_RS07170 PF00929 Exonuclease SPAF_RS07175 PF00753 Metallo-beta-lactamase superfamily SPAF_RS07180 PF18075 FtsX extracellular domain SPAF_RS07180 PF02687 FtsX-like permease family SPAF_RS07185 PF00005 ABC transporter SPAF_RS07190 PF00472 RF-1 domain SPAF_RS07190 PF03462 PCRF domain SPAF_RS07200 PF00689 Cation transporting ATPase, C-terminus SPAF_RS07200 PF00690 Cation transporter/ATPase, N-terminus SPAF_RS07210 PF01966 HD domain SPAF_RS07220 PF02388 FemAB family SPAF_RS07230 PF00121 Triosephosphate isomerase SPAF_RS07235 PF03144 Elongation factor Tu domain 2 SPAF_RS07235 PF00009 Elongation factor Tu GTP binding domain SPAF_RS07235 PF03143 Elongation factor Tu C-terminal domain SPAF_RS07240 PF00311 Phosphoenolpyruvate carboxylase SPAF_RS07245 PF01098 Cell cycle protein SPAF_RS07255 PF04073 Aminoacyl-tRNA editing domain SPAF_RS07265 PF01336 OB-fold nucleic acid binding domain SPAF_RS07265 PF00152 tRNA synthetases class II (D, K and N) SPAF_RS07270 PF12704 MacB-like periplasmic core domain SPAF_RS07270 PF02687 FtsX-like permease family SPAF_RS07275 PF00005 ABC transporter SPAF_RS07280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SPAF_RS07285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPAF_RS07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPAF_RS07290 PF04199 Putative cyclase SPAF_RS07295 PF01717 Cobalamin-independent synthase, Catalytic domain SPAF_RS07300 PF02229 Transcriptional Coactivator p15 (PC4) SPAF_RS07310 PF16325 Peptidase family U32 C-terminal domain SPAF_RS07310 PF01136 Peptidase family U32 SPAF_RS07325 PF01797 Transposase IS200 like SPAF_RS07340 PF01790 Prolipoprotein diacylglyceryl transferase SPAF_RS07345 PF02603 HPr Serine kinase N terminus SPAF_RS07345 PF07475 HPr Serine kinase C-terminal domain SPAF_RS07365 PF10263 SprT-like family SPAF_RS07365 PF17283 SprT-like zinc ribbon domain SPAF_RS07370 PF17674 HHH domain SPAF_RS07370 PF00575 S1 RNA binding domain SPAF_RS07370 PF09371 Tex-like protein N-terminal domain SPAF_RS07370 PF16921 Tex protein YqgF-like domain SPAF_RS07375 PF03773 Predicted permease SPAF_RS07380 PF09323 Domain of unknown function (DUF1980) SPAF_RS07385 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SPAF_RS07385 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SPAF_RS07390 PF00448 SRP54-type protein, GTPase domain SPAF_RS07390 PF02881 SRP54-type protein, helical bundle domain SPAF_RS07405 PF02463 RecF/RecN/SMC N terminal domain SPAF_RS07405 PF06470 SMC proteins Flexible Hinge Domain SPAF_RS07410 PF14622 Ribonuclease-III-like SPAF_RS07410 PF00035 Double-stranded RNA binding motif SPAF_RS07415 PF04304 Protein of unknown function (DUF454) SPAF_RS07420 PF00753 Metallo-beta-lactamase superfamily SPAF_RS07425 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS07425 PF00672 HAMP domain SPAF_RS07425 PF13426 PAS domain SPAF_RS07430 PF00072 Response regulator receiver domain SPAF_RS07430 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS07435 PF02824 TGS domain SPAF_RS07435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPAF_RS07435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPAF_RS07435 PF03129 Anticodon binding domain SPAF_RS07440 PF00534 Glycosyl transferases group 1 SPAF_RS07440 PF13439 Glycosyltransferase Family 4 SPAF_RS07445 PF13439 Glycosyltransferase Family 4 SPAF_RS07445 PF00534 Glycosyl transferases group 1 SPAF_RS07450 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS07455 PF00557 Metallopeptidase family M24 SPAF_RS07455 PF01321 Creatinase/Prolidase N-terminal domain SPAF_RS07465 PF00665 Integrase core domain SPAF_RS07465 PF13333 Integrase core domain SPAF_RS07475 PF02082 Transcriptional regulator SPAF_RS07490 PF00005 ABC transporter SPAF_RS07490 PF02687 FtsX-like permease family SPAF_RS07490 PF12704 MacB-like periplasmic core domain SPAF_RS07495 PF01566 Natural resistance-associated macrophage protein SPAF_RS07510 PF03848 Tellurite resistance protein TehB SPAF_RS07510 PF09313 Domain of unknown function (DUF1971) SPAF_RS07520 PF01668 SmpB protein SPAF_RS07525 PF17876 Cold shock domain SPAF_RS07525 PF08206 Ribonuclease B OB domain SPAF_RS07525 PF00773 RNB domain SPAF_RS07525 PF00575 S1 RNA binding domain SPAF_RS07535 PF00083 Sugar (and other) transporter SPAF_RS07535 PF07690 Major Facilitator Superfamily SPAF_RS07540 PF01121 Dephospho-CoA kinase SPAF_RS07545 PF06827 Zinc finger found in FPG and IleRS SPAF_RS07545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPAF_RS07545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPAF_RS07550 PF01926 50S ribosome-binding GTPase SPAF_RS07550 PF07650 KH domain SPAF_RS07555 PF01219 Prokaryotic diacylglycerol kinase SPAF_RS07560 PF02130 Uncharacterized protein family UPF0054 SPAF_RS07565 PF00005 ABC transporter SPAF_RS07565 PF00664 ABC transporter transmembrane region SPAF_RS07570 PF00005 ABC transporter SPAF_RS07570 PF00664 ABC transporter transmembrane region SPAF_RS07585 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPAF_RS07585 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPAF_RS07590 PF02562 PhoH-like protein SPAF_RS07595 PF06855 YozE SAM-like fold SPAF_RS07605 PF01765 Ribosome recycling factor SPAF_RS07610 PF00696 Amino acid kinase family SPAF_RS07615 PF00687 Ribosomal protein L1p/L10e family SPAF_RS07620 PF03946 Ribosomal protein L11, N-terminal domain SPAF_RS07620 PF00298 Ribosomal protein L11, RNA binding domain SPAF_RS07635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPAF_RS07640 PF01580 FtsK/SpoIIIE family SPAF_RS07640 PF09397 Ftsk gamma domain SPAF_RS07640 PF17854 FtsK alpha domain SPAF_RS07660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPAF_RS07665 PF12848 ABC transporter SPAF_RS07665 PF00005 ABC transporter SPAF_RS07670 PF03960 ArsC family SPAF_RS07675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SPAF_RS07675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SPAF_RS07685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPAF_RS07690 PF06156 Initiation control protein YabA SPAF_RS07695 PF09115 DNA polymerase III, delta subunit, C terminal SPAF_RS07700 PF02223 Thymidylate kinase SPAF_RS07705 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPAF_RS07705 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPAF_RS07710 PF01743 Poly A polymerase head domain SPAF_RS07710 PF00571 CBS domain SPAF_RS07715 PF00005 ABC transporter SPAF_RS07720 PF12399 Branched-chain amino acid ATP-binding cassette transporter SPAF_RS07720 PF00005 ABC transporter SPAF_RS07725 PF02653 Branched-chain amino acid transport system / permease component SPAF_RS07725 PF11862 Domain of unknown function (DUF3382) SPAF_RS07730 PF02653 Branched-chain amino acid transport system / permease component SPAF_RS07735 PF13458 Periplasmic binding protein SPAF_RS07740 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SPAF_RS07745 PF00574 Clp protease SPAF_RS07755 PF00689 Cation transporting ATPase, C-terminus SPAF_RS07755 PF00690 Cation transporter/ATPase, N-terminus SPAF_RS07760 PF00155 Aminotransferase class I and II SPAF_RS07765 PF01053 Cys/Met metabolism PLP-dependent enzyme SPAF_RS07770 PF14667 Polysaccharide biosynthesis C-terminal domain SPAF_RS07770 PF01943 Polysaccharide biosynthesis protein SPAF_RS07775 PF08245 Mur ligase middle domain SPAF_RS07775 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS07790 PF01368 DHH family SPAF_RS07790 PF02833 DHHA2 domain SPAF_RS07795 PF04055 Radical SAM superfamily SPAF_RS07805 PF16657 Maltogenic Amylase, C-terminal domain SPAF_RS07805 PF00128 Alpha amylase, catalytic domain SPAF_RS07810 PF00367 phosphotransferase system, EIIB SPAF_RS07810 PF02378 Phosphotransferase system, EIIC SPAF_RS07815 PF00392 Bacterial regulatory proteins, gntR family SPAF_RS07815 PF07702 UTRA domain SPAF_RS07820 PF09383 NIL domain SPAF_RS07820 PF00005 ABC transporter SPAF_RS07825 PF02653 Branched-chain amino acid transport system / permease component SPAF_RS07835 PF00571 CBS domain SPAF_RS07835 PF01595 Cyclin M transmembrane N-terminal domain SPAF_RS07835 PF03471 Transporter associated domain SPAF_RS07840 PF05043 Mga helix-turn-helix domain SPAF_RS07840 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPAF_RS07840 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPAF_RS07845 PF01594 AI-2E family transporter SPAF_RS07850 PF00005 ABC transporter SPAF_RS07855 PF05738 Cna protein B-type domain SPAF_RS07855 PF05737 Collagen binding domain SPAF_RS07855 PF17802 Prealbumin-like fold domain SPAF_RS07870 PF00746 LPXTG cell wall anchor motif SPAF_RS07870 PF04650 YSIRK type signal peptide SPAF_RS07870 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SPAF_RS07870 PF17210 SdrD B-like domain SPAF_RS07870 PF17961 Bacterial Ig domain SPAF_RS07875 PF00999 Sodium/hydrogen exchanger family SPAF_RS07885 PF06962 Putative rRNA methylase SPAF_RS07890 PF16199 Radical_SAM C-terminal domain SPAF_RS07890 PF04055 Radical SAM superfamily SPAF_RS07895 PF01569 PAP2 superfamily SPAF_RS07900 PF12822 ECF transporter, substrate-specific component SPAF_RS07905 PF00588 SpoU rRNA Methylase family SPAF_RS07910 PF02254 TrkA-N domain SPAF_RS07910 PF02080 TrkA-C domain SPAF_RS07915 PF02386 Cation transport protein SPAF_RS07920 PF01809 Putative membrane protein insertion efficiency factor SPAF_RS07925 PF01479 S4 domain SPAF_RS07925 PF00849 RNA pseudouridylate synthase SPAF_RS07930 PF04079 Segregation and condensation complex subunit ScpB SPAF_RS07935 PF02616 Segregation and condensation protein ScpA SPAF_RS07940 PF00589 Phage integrase family SPAF_RS07940 PF02899 Phage integrase, N-terminal SAM-like domain SPAF_RS07955 PF01725 Ham1 family SPAF_RS07960 PF01177 Asp/Glu/Hydantoin racemase SPAF_RS07965 PF03672 Uncharacterised protein family (UPF0154) SPAF_RS07970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SPAF_RS07970 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SPAF_RS07975 PF01027 Inhibitor of apoptosis-promoting Bax1 SPAF_RS07985 PF00588 SpoU rRNA Methylase family SPAF_RS07985 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPAF_RS07990 PF00708 Acylphosphatase SPAF_RS07995 PF02096 60Kd inner membrane protein SPAF_RS08005 PF03449 Transcription elongation factor, N-terminal SPAF_RS08005 PF01272 Transcription elongation factor, GreA/GreB, C-term SPAF_RS08010 PF02618 YceG-like family SPAF_RS08025 PF01225 Mur ligase family, catalytic domain SPAF_RS08025 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS08025 PF08245 Mur ligase middle domain SPAF_RS08035 PF12419 SNF2 Helicase protein SPAF_RS08035 PF00271 Helicase conserved C-terminal domain SPAF_RS08035 PF00176 SNF2 family N-terminal domain SPAF_RS08040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPAF_RS08040 PF01926 50S ribosome-binding GTPase SPAF_RS08045 PF00881 Nitroreductase family SPAF_RS08050 PF07319 Primosomal protein DnaI N-terminus SPAF_RS08050 PF01695 IstB-like ATP binding protein SPAF_RS08060 PF03477 ATP cone domain SPAF_RS08065 PF03372 Endonuclease/Exonuclease/phosphatase family SPAF_RS08070 PF02378 Phosphotransferase system, EIIC SPAF_RS08070 PF00367 phosphotransferase system, EIIB SPAF_RS08070 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPAF_RS08075 PF00072 Response regulator receiver domain SPAF_RS08075 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS08080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SPAF_RS08080 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SPAF_RS08085 PF01145 SPFH domain / Band 7 family SPAF_RS08085 PF15975 Flotillin SPAF_RS08110 PF01435 Peptidase family M48 SPAF_RS08115 PF04011 LemA family SPAF_RS08120 PF02527 rRNA small subunit methyltransferase G SPAF_RS08125 PF00294 pfkB family carbohydrate kinase SPAF_RS08130 PF00106 short chain dehydrogenase SPAF_RS08140 PF00005 ABC transporter SPAF_RS08140 PF12558 ATP-binding cassette cobalt transporter SPAF_RS08155 PF00581 Rhodanese-like domain SPAF_RS08155 PF17773 UPF0176 acylphosphatase like domain SPAF_RS08155 PF12368 Rhodanase C-terminal SPAF_RS08175 PF07155 ECF-type riboflavin transporter, S component SPAF_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS08195 PF09383 NIL domain SPAF_RS08195 PF00005 ABC transporter SPAF_RS08200 PF07687 Peptidase dimerisation domain SPAF_RS08200 PF01546 Peptidase family M20/M25/M40 SPAF_RS08205 PF03180 NLPA lipoprotein SPAF_RS08210 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPAF_RS08215 PF07687 Peptidase dimerisation domain SPAF_RS08215 PF01546 Peptidase family M20/M25/M40 SPAF_RS08230 PF08240 Alcohol dehydrogenase GroES-like domain SPAF_RS08230 PF00107 Zinc-binding dehydrogenase SPAF_RS08240 PF02637 GatB domain SPAF_RS08240 PF02934 GatB/GatE catalytic domain SPAF_RS08245 PF01425 Amidase SPAF_RS08250 PF02686 Glu-tRNAGln amidotransferase C subunit SPAF_RS08255 PF00857 Isochorismatase family SPAF_RS08260 PF08222 CodY helix-turn-helix domain SPAF_RS08260 PF06018 CodY GAF-like domain SPAF_RS08265 PF00155 Aminotransferase class I and II SPAF_RS08270 PF00582 Universal stress protein family SPAF_RS08280 PF17763 Glutaminase/Asparaginase C-terminal domain SPAF_RS08280 PF00710 Asparaginase, N-terminal SPAF_RS08285 PF00271 Helicase conserved C-terminal domain SPAF_RS08285 PF00270 DEAD/DEAH box helicase SPAF_RS08285 PF17191 RecG wedge domain SPAF_RS08290 PF01168 Alanine racemase, N-terminal domain SPAF_RS08290 PF00842 Alanine racemase, C-terminal domain SPAF_RS08295 PF01648 4'-phosphopantetheinyl transferase superfamily SPAF_RS08300 PF00793 DAHP synthetase I family SPAF_RS08305 PF02810 SEC-C motif SPAF_RS08305 PF07516 SecA Wing and Scaffold domain SPAF_RS08305 PF07517 SecA DEAD-like domain SPAF_RS08305 PF01043 SecA preprotein cross-linking domain SPAF_RS08310 PF13520 Amino acid permease SPAF_RS08315 PF07739 TipAS antibiotic-recognition domain SPAF_RS08315 PF13411 MerR HTH family regulatory protein SPAF_RS08320 PF01238 Phosphomannose isomerase type I SPAF_RS08325 PF08331 Domain of unknown function (DUF1730) SPAF_RS08340 PF01327 Polypeptide deformylase SPAF_RS08345 PF00480 ROK family SPAF_RS08350 PF02378 Phosphotransferase system, EIIC SPAF_RS08350 PF00367 phosphotransferase system, EIIB SPAF_RS08350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPAF_RS08355 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPAF_RS08355 PF08244 Glycosyl hydrolases family 32 C terminal SPAF_RS08360 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS08365 PF01029 NusB family SPAF_RS08370 PF03780 Asp23 family, cell envelope-related function SPAF_RS08375 PF01132 Elongation factor P (EF-P) OB domain SPAF_RS08375 PF08207 Elongation factor P (EF-P) KOW-like domain SPAF_RS08375 PF09285 Elongation factor P, C-terminal SPAF_RS08380 PF00557 Metallopeptidase family M24 SPAF_RS08380 PF01321 Creatinase/Prolidase N-terminal domain SPAF_RS08385 PF17760 UvrA interaction domain SPAF_RS08385 PF17755 UvrA DNA-binding domain SPAF_RS08385 PF00005 ABC transporter SPAF_RS08400 PF02384 N-6 DNA Methylase SPAF_RS08430 PF01084 Ribosomal protein S18 SPAF_RS08435 PF00436 Single-strand binding protein family SPAF_RS08440 PF01250 Ribosomal protein S6 SPAF_RS08465 PF02225 PA domain SPAF_RS08465 PF00082 Subtilase family SPAF_RS08465 PF06280 Fn3-like domain SPAF_RS08470 PF02225 PA domain SPAF_RS08470 PF00082 Subtilase family SPAF_RS08470 PF06280 Fn3-like domain SPAF_RS08475 PF00149 Calcineurin-like phosphoesterase SPAF_RS08475 PF17936 Bacterial Ig domain SPAF_RS08475 PF02872 5'-nucleotidase, C-terminal domain SPAF_RS08480 PF09364 XFP N-terminal domain SPAF_RS08480 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SPAF_RS08480 PF09363 XFP C-terminal domain SPAF_RS08485 PF01979 Amidohydrolase family SPAF_RS08490 PF01175 Urocanase Rossmann-like domain SPAF_RS08490 PF17391 Urocanase N-terminal domain SPAF_RS08490 PF17392 Urocanase C-terminal domain SPAF_RS08495 PF07837 Formiminotransferase domain, N-terminal subdomain SPAF_RS08495 PF02971 Formiminotransferase domain SPAF_RS08500 PF04961 Formiminotransferase-cyclodeaminase SPAF_RS08505 PF01268 Formate--tetrahydrofolate ligase SPAF_RS08515 PF13520 Amino acid permease SPAF_RS08520 PF00221 Aromatic amino acid lyase SPAF_RS08525 PF00491 Arginase family SPAF_RS08535 PF02219 Methylenetetrahydrofolate reductase SPAF_RS08540 PF01717 Cobalamin-independent synthase, Catalytic domain SPAF_RS08540 PF08267 Cobalamin-independent synthase, N-terminal domain SPAF_RS08545 PF16657 Maltogenic Amylase, C-terminal domain SPAF_RS08545 PF00128 Alpha amylase, catalytic domain SPAF_RS08560 PF02080 TrkA-C domain SPAF_RS08560 PF02254 TrkA-N domain SPAF_RS08565 PF02386 Cation transport protein SPAF_RS08580 PF08220 DeoR-like helix-turn-helix domain SPAF_RS08580 PF00455 DeoR C terminal sensor domain SPAF_RS08595 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPAF_RS08600 PF03466 LysR substrate binding domain SPAF_RS08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPAF_RS08605 PF08240 Alcohol dehydrogenase GroES-like domain SPAF_RS08605 PF00107 Zinc-binding dehydrogenase SPAF_RS08610 PF00762 Ferrochelatase SPAF_RS08615 PF01545 Cation efflux family SPAF_RS08640 PF13610 DDE domain SPAF_RS08655 PF00005 ABC transporter SPAF_RS08660 PF00005 ABC transporter SPAF_RS08665 PF02361 Cobalt transport protein SPAF_RS08680 PF00425 chorismate binding enzyme SPAF_RS08680 PF04715 Anthranilate synthase component I, N terminal region SPAF_RS08690 PF00005 ABC transporter SPAF_RS08700 PF00512 His Kinase A (phospho-acceptor) domain SPAF_RS08700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS08705 PF00072 Response regulator receiver domain SPAF_RS08705 PF00486 Transcriptional regulatory protein, C terminal SPAF_RS08710 PF00232 Glycosyl hydrolase family 1 SPAF_RS08715 PF13472 GDSL-like Lipase/Acylhydrolase family SPAF_RS08715 PF07859 alpha/beta hydrolase fold SPAF_RS08720 PF00703 Glycosyl hydrolases family 2 SPAF_RS08720 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPAF_RS08720 PF16355 Domain of unknown function (DUF4982) SPAF_RS08720 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPAF_RS08720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPAF_RS08730 PF12833 Helix-turn-helix domain SPAF_RS08730 PF02311 AraC-like ligand binding domain SPAF_RS08735 PF00933 Glycosyl hydrolase family 3 N terminal domain SPAF_RS08740 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain SPAF_RS08740 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain SPAF_RS08740 PF08531 Alpha-L-rhamnosidase N-terminal domain SPAF_RS08740 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain SPAF_RS08745 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS08750 PF04616 Glycosyl hydrolases family 43 SPAF_RS08750 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SPAF_RS08755 PF00465 Iron-containing alcohol dehydrogenase SPAF_RS08760 PF00596 Class II Aldolase and Adducin N-terminal domain SPAF_RS08765 PF06134 L-rhamnose isomerase (RhaA) SPAF_RS08770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPAF_RS08770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPAF_RS08775 PF02311 AraC-like ligand binding domain SPAF_RS08775 PF12833 Helix-turn-helix domain SPAF_RS08785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPAF_RS08785 PF00205 Thiamine pyrophosphate enzyme, central domain SPAF_RS08785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPAF_RS08820 PF04474 Protein of unknown function (DUF554) SPAF_RS08825 PF01624 MutS domain I SPAF_RS08825 PF05192 MutS domain III SPAF_RS08825 PF05190 MutS family domain IV SPAF_RS08825 PF00488 MutS domain V SPAF_RS08825 PF05188 MutS domain II SPAF_RS08835 PF01625 Peptide methionine sulfoxide reductase SPAF_RS08835 PF01641 SelR domain SPAF_RS08845 PF01180 Dihydroorotate dehydrogenase SPAF_RS08850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SPAF_RS08850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SPAF_RS08870 PF00924 Mechanosensitive ion channel SPAF_RS08875 PF00375 Sodium:dicarboxylate symporter family SPAF_RS08880 PF01235 Sodium:alanine symporter family SPAF_RS08885 PF03577 Peptidase family C69 SPAF_RS08890 PF01713 Smr domain SPAF_RS08890 PF00488 MutS domain V SPAF_RS08905 PF11858 Domain of unknown function (DUF3378) SPAF_RS08905 PF01351 Ribonuclease HII SPAF_RS08910 PF10502 Signal peptidase, peptidase S26 SPAF_RS08915 PF14490 Helix-hairpin-helix containing domain SPAF_RS08915 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SPAF_RS08915 PF13538 UvrD-like helicase C-terminal domain SPAF_RS08920 PF11799 impB/mucB/samB family C-terminal domain SPAF_RS08920 PF00817 impB/mucB/samB family SPAF_RS08925 PF01228 Glycine radical SPAF_RS08925 PF02901 Pyruvate formate lyase-like SPAF_RS08945 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SPAF_RS08945 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPAF_RS08950 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPAF_RS08960 PF03577 Peptidase family C69 SPAF_RS08965 PF01070 FMN-dependent dehydrogenase SPAF_RS08970 PF08544 GHMP kinases C terminal SPAF_RS08970 PF00288 GHMP kinases N terminal domain SPAF_RS08980 PF10509 Galactokinase galactose-binding signature SPAF_RS08980 PF08544 GHMP kinases C terminal SPAF_RS08980 PF00288 GHMP kinases N terminal domain SPAF_RS08985 PF00144 Beta-lactamase SPAF_RS09000 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPAF_RS09000 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPAF_RS09000 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPAF_RS09005 PF08279 HTH domain SPAF_RS09005 PF04394 Protein of unknown function, DUF536 SPAF_RS09010 PF14480 DNA polymerase III polC-type N-terminus I SPAF_RS09010 PF11490 DNA polymerase III polC-type N-terminus II SPAF_RS09010 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPAF_RS09010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPAF_RS09010 PF00929 Exonuclease SPAF_RS09010 PF02811 PHP domain SPAF_RS09010 PF14579 Helix-hairpin-helix motif SPAF_RS09015 PF02575 YbaB/EbfC DNA-binding family SPAF_RS09020 PF00589 Phage integrase family SPAF_RS09020 PF14659 Phage integrase, N-terminal SAM-like domain SPAF_RS09030 PF05257 CHAP domain SPAF_RS09030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPAF_RS09100 PF01381 Helix-turn-helix SPAF_RS09125 PF01381 Helix-turn-helix SPAF_RS09145 PF00005 ABC transporter SPAF_RS09145 PF02687 FtsX-like permease family SPAF_RS09145 PF12704 MacB-like periplasmic core domain SPAF_RS09185 PF02661 Fic/DOC family SPAF_RS09185 PF18543 Intracellular delivery domain SPAF_RS09195 PF00664 ABC transporter transmembrane region SPAF_RS09195 PF00005 ABC transporter SPAF_RS09205 PF01381 Helix-turn-helix SPAF_RS09225 PF04172 LrgB-like family SPAF_RS09230 PF03788 LrgA family SPAF_RS09240 PF00230 Major intrinsic protein SPAF_RS09275 PF00814 Glycoprotease family SPAF_RS09280 PF00583 Acetyltransferase (GNAT) family SPAF_RS09285 PF00814 Glycoprotease family SPAF_RS09290 PF07288 Protein of unknown function (DUF1447) SPAF_RS09295 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPAF_RS09295 PF17770 Ribonuclease J C-terminal domain SPAF_RS09295 PF00753 Metallo-beta-lactamase superfamily SPAF_RS09300 PF03951 Glutamine synthetase, beta-Grasp domain SPAF_RS09300 PF00120 Glutamine synthetase, catalytic domain SPAF_RS09305 PF13411 MerR HTH family regulatory protein SPAF_RS09315 PF00162 Phosphoglycerate kinase SPAF_RS09325 PF12905 Endo-alpha-N-acetylgalactosaminidase SPAF_RS09325 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal SPAF_RS09325 PF17974 Galactose-binding domain-like SPAF_RS09325 PF17451 Glycosyl hydrolase 101 beta sandwich domain SPAF_RS09325 PF04650 YSIRK type signal peptide SPAF_RS09325 PF18080 Galactose mutarotase-like fold domain SPAF_RS09325 PF00754 F5/8 type C domain SPAF_RS09330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPAF_RS09330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPAF_RS09335 PF00679 Elongation factor G C-terminus SPAF_RS09335 PF14492 Elongation Factor G, domain II SPAF_RS09335 PF03764 Elongation factor G, domain IV SPAF_RS09335 PF03144 Elongation factor Tu domain 2 SPAF_RS09335 PF00009 Elongation factor Tu GTP binding domain SPAF_RS09340 PF00177 Ribosomal protein S7p/S5e SPAF_RS09345 PF00164 Ribosomal protein S12/S23 SPAF_RS09355 PF09182 Bacterial purine repressor, N-terminal SPAF_RS09355 PF00156 Phosphoribosyl transferase domain SPAF_RS09360 PF01966 HD domain SPAF_RS09365 PF02646 RmuC family SPAF_RS09375 PF00834 Ribulose-phosphate 3 epimerase family SPAF_RS09380 PF03193 RsgA GTPase SPAF_RS09380 PF16745 RsgA N-terminal domain SPAF_RS09400 PF00398 Ribosomal RNA adenine dimethylase SPAF_RS09410 PF01026 TatD related DNase SPAF_RS09425 PF14804 Jag N-terminus SPAF_RS09425 PF01424 R3H domain SPAF_RS09430 PF02096 60Kd inner membrane protein SPAF_RS09435 PF00825 Ribonuclease P SPAF_RS09460 PF00534 Glycosyl transferases group 1 SPAF_RS09465 PF07517 SecA DEAD-like domain SPAF_RS09465 PF07516 SecA Wing and Scaffold domain SPAF_RS09465 PF01043 SecA preprotein cross-linking domain SPAF_RS09475 PF16929 Accessory Sec system GspB-transporter SPAF_RS09480 PF16993 Accessory Sec system protein Asp1 SPAF_RS09485 PF00344 SecY translocase SPAF_RS09490 PF04286 Protein of unknown function (DUF445) SPAF_RS09490 PF00746 LPXTG cell wall anchor motif SPAF_RS09495 PF01501 Glycosyl transferase family 8 SPAF_RS09495 PF00535 Glycosyl transferase family 2 SPAF_RS09500 PF01501 Glycosyl transferase family 8 SPAF_RS09500 PF08759 Glycosyltransferase GT-D fold SPAF_RS09510 PF00535 Glycosyl transferase family 2 SPAF_RS09510 PF01501 Glycosyl transferase family 8 SPAF_RS09515 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPAF_RS09520 PF00756 Putative esterase SPAF_RS09525 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPAF_RS09525 PF17770 Ribonuclease J C-terminal domain SPAF_RS09525 PF00753 Metallo-beta-lactamase superfamily SPAF_RS09535 PF09383 NIL domain SPAF_RS09535 PF00005 ABC transporter SPAF_RS09550 PF00484 Carbonic anhydrase SPAF_RS09565 PF00692 dUTPase SPAF_RS09575 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal SPAF_RS09575 PF00754 F5/8 type C domain SPAF_RS09575 PF04650 YSIRK type signal peptide SPAF_RS09575 PF12905 Endo-alpha-N-acetylgalactosaminidase SPAF_RS09575 PF17451 Glycosyl hydrolase 101 beta sandwich domain SPAF_RS09575 PF18080 Galactose mutarotase-like fold domain SPAF_RS09575 PF17974 Galactose-binding domain-like SPAF_RS09580 PF07722 Peptidase C26 SPAF_RS09585 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPAF_RS09585 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPAF_RS09590 PF00483 Nucleotidyl transferase SPAF_RS09595 PF03577 Peptidase family C69 SPAF_RS09605 PF01812 5-formyltetrahydrofolate cyclo-ligase family SPAF_RS09610 PF07687 Peptidase dimerisation domain SPAF_RS09610 PF01546 Peptidase family M20/M25/M40 SPAF_RS09615 PF14602 Hexapeptide repeat of succinyl-transferase SPAF_RS09615 PF00132 Bacterial transferase hexapeptide (six repeats) SPAF_RS09615 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SPAF_RS09630 PF01797 Transposase IS200 like SPAF_RS09645 PF00342 Phosphoglucose isomerase SPAF_RS09655 PF14437 MafB19-like deaminase SPAF_RS09660 PF00664 ABC transporter transmembrane region SPAF_RS09660 PF00005 ABC transporter SPAF_RS09660 PF03412 Peptidase C39 family SPAF_RS09670 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS09675 PF00709 Adenylosuccinate synthetase SPAF_RS09685 PF01430 Hsp33 protein SPAF_RS09690 PF01207 Dihydrouridine synthase (Dus) SPAF_RS09705 PF04973 Nicotinamide mononucleotide transporter SPAF_RS09710 PF01467 Cytidylyltransferase-like SPAF_RS09730 PF02861 Clp amino terminal domain, pathogenicity island component SPAF_RS09730 PF10431 C-terminal, D2-small domain, of ClpB protein SPAF_RS09730 PF00004 ATPase family associated with various cellular activities (AAA) SPAF_RS09730 PF07724 AAA domain (Cdc48 subfamily) SPAF_RS09730 PF17871 AAA lid domain SPAF_RS09735 PF05848 CtsR N-terminal HTH domain SPAF_RS09735 PF17727 CtsR C-terminal dimerization domain SPAF_RS09745 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPAF_RS09745 PF16355 Domain of unknown function (DUF4982) SPAF_RS09745 PF00703 Glycosyl hydrolases family 2 SPAF_RS09745 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPAF_RS09745 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPAF_RS09750 PF00210 Ferritin-like domain SPAF_RS09770 PF00665 Integrase core domain SPAF_RS09770 PF13333 Integrase core domain SPAF_RS09775 PF00889 Elongation factor TS SPAF_RS09780 PF00318 Ribosomal protein S2 SPAF_RS09790 PF02357 Transcription termination factor nusG SPAF_RS09790 PF00467 KOW motif SPAF_RS09810 PF04228 Putative neutral zinc metallopeptidase SPAF_RS09815 PF00912 Transglycosylase SPAF_RS09815 PF00905 Penicillin binding protein transpeptidase domain SPAF_RS09820 PF00849 RNA pseudouridylate synthase SPAF_RS09820 PF01479 S4 domain SPAF_RS09845 PF02350 UDP-N-acetylglucosamine 2-epimerase SPAF_RS09870 PF04991 LicD family SPAF_RS09875 PF03808 Glycosyl transferase WecB/TagA/CpsF family SPAF_RS09880 PF02397 Bacterial sugar transferase SPAF_RS09885 PF13614 AAA domain SPAF_RS09890 PF02706 Chain length determinant protein SPAF_RS09900 PF03816 Cell envelope-related transcriptional attenuator domain SPAF_RS09915 PF03477 ATP cone domain SPAF_RS09915 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPAF_RS09925 PF13091 PLD-like domain SPAF_RS09935 PF02875 Mur ligase family, glutamate ligase domain SPAF_RS09935 PF08245 Mur ligase middle domain SPAF_RS09940 PF06949 Protein of unknown function (DUF1292) SPAF_RS09945 PF03652 Holliday junction resolvase SPAF_RS09950 PF06135 IreB regulatory phosphoprotein SPAF_RS09960 PF03960 ArsC family SPAF_RS09965 PF00154 recA bacterial DNA recombination protein SPAF_RS09970 PF00994 Probable molybdopterin binding domain SPAF_RS09970 PF02464 Competence-damaged protein SPAF_RS09970 PF18146 Damage-inducible protein CinA KH domain SPAF_RS09975 PF00117 Glutamine amidotransferase class-I SPAF_RS09975 PF03352 Methyladenine glycosylase SPAF_RS09975 PF00958 GMP synthase C terminal domain SPAF_RS09975 PF13302 Acetyltransferase (GNAT) domain SPAF_RS09975 PF13673 Acetyltransferase (GNAT) domain SPAF_RS09980 PF01330 RuvA N terminal domain SPAF_RS09980 PF07499 RuvA, C-terminal domain SPAF_RS09985 PF08676 MutL C terminal dimerisation domain SPAF_RS09985 PF01119 DNA mismatch repair protein, C-terminal domain SPAF_RS09990 PF04397 LytTr DNA-binding domain SPAF_RS10000 PF05188 MutS domain II SPAF_RS10000 PF01624 MutS domain I SPAF_RS10000 PF05192 MutS domain III SPAF_RS10000 PF05190 MutS family domain IV SPAF_RS10000 PF00488 MutS domain V SPAF_RS10005 PF01316 Arginine repressor, DNA binding domain SPAF_RS10005 PF02863 Arginine repressor, C-terminal domain SPAF_RS10010 PF00750 tRNA synthetases class I (R) SPAF_RS10010 PF03485 Arginyl tRNA synthetase N terminal domain SPAF_RS10010 PF05746 DALR anticodon binding domain SPAF_RS10015 PF07972 NrdI Flavodoxin like SPAF_RS10030 PF00343 Carbohydrate phosphorylase SPAF_RS10035 PF02446 4-alpha-glucanotransferase SPAF_RS10040 PF13416 Bacterial extracellular solute-binding protein SPAF_RS10045 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS10060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPAF_RS10060 PF00356 Bacterial regulatory proteins, lacI family SPAF_RS10065 PF00128 Alpha amylase, catalytic domain SPAF_RS10065 PF17999 Pullulanase N1-terminal domain SPAF_RS10065 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPAF_RS10070 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPAF_RS10070 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPAF_RS10075 PF02938 GAD domain SPAF_RS10075 PF00152 tRNA synthetases class II (D, K and N) SPAF_RS10075 PF01336 OB-fold nucleic acid binding domain SPAF_RS10085 PF04914 DltD protein SPAF_RS10090 PF00550 Phosphopantetheine attachment site SPAF_RS10095 PF03062 MBOAT, membrane-bound O-acyltransferase family SPAF_RS10100 PF00501 AMP-binding enzyme SPAF_RS10100 PF13193 AMP-binding enzyme C-terminal domain SPAF_RS10145 PF00163 Ribosomal protein S4/S9 N-terminal domain SPAF_RS10145 PF01479 S4 domain SPAF_RS10150 PF00005 ABC transporter SPAF_RS10155 PF09084 NMT1/THI5 like SPAF_RS10160 PF00528 Binding-protein-dependent transport system inner membrane component SPAF_RS10170 PF03796 DnaB-like helicase C terminal domain SPAF_RS10170 PF00772 DnaB-like helicase N terminal domain SPAF_RS10175 PF01281 Ribosomal protein L9, N-terminal domain SPAF_RS10175 PF03948 Ribosomal protein L9, C-terminal domain SPAF_RS10180 PF01368 DHH family SPAF_RS10180 PF02272 DHHA1 domain SPAF_RS10185 PF13932 GidA associated domain SPAF_RS10185 PF01134 Glucose inhibited division protein A SPAF_RS10190 PF00293 NUDIX domain SPAF_RS10200 PF05257 CHAP domain SPAF_RS10200 PF01476 LysM domain SPAF_RS10205 PF03315 Serine dehydratase beta chain SPAF_RS10205 PF01842 ACT domain SPAF_RS10210 PF03313 Serine dehydratase alpha chain SPAF_RS10215 PF13419 Haloacid dehalogenase-like hydrolase SPAF_RS10220 PF06737 Transglycosylase-like domain SPAF_RS10225 PF02361 Cobalt transport protein SPAF_RS10230 PF00005 ABC transporter SPAF_RS10235 PF00005 ABC transporter SPAF_RS10240 PF01066 CDP-alcohol phosphatidyltransferase SPAF_RS10250 PF05193 Peptidase M16 inactive domain SPAF_RS10250 PF00675 Insulinase (Peptidase family M16) SPAF_RS10255 PF05193 Peptidase M16 inactive domain SPAF_RS10255 PF00675 Insulinase (Peptidase family M16) SPAF_RS10265 PF02463 RecF/RecN/SMC N terminal domain SPAF_RS10270 PF00478 IMP dehydrogenase / GMP reductase domain SPAF_RS10270 PF00571 CBS domain SPAF_RS10275 PF00579 tRNA synthetases class I (W and Y) SPAF_RS10280 PF12848 ABC transporter SPAF_RS10280 PF00005 ABC transporter SPAF_RS10305 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPAF_RS10305 PF17203 Single cache domain 3 SPAF_RS10305 PF00989 PAS fold SPAF_RS10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPAF_RS10315 PF02590 Predicted SPOUT methyltransferase SPAF_RS10320 PF13180 PDZ domain SPAF_RS10325 PF02195 ParB-like nuclease domain SPAF_RS10325 PF17762 HTH domain found in ParB protein