SPB_RS00030	SM00885	D5 N terminal like
SPB_RS00035	SM00942	Primase C terminal 1 (PriCT-1)
SPB_RS00120	SM00529	Helix-turn-helix diphteria tox regulatory element
SPB_RS00130	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00145	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00145	SM00843	SPB_RS00145
SPB_RS00160	SM00649	Ribosomal protein L11/L12
SPB_RS00215	SM00986	Uracil DNA glycosylase superfamily
SPB_RS00215	SM00987	UreE urease accessory protein, C-terminal domain 
SPB_RS00255	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00265	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
SPB_RS00265	SM01232	SPB_RS00265
SPB_RS00295	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS00295	SM00955	SPB_RS00295
SPB_RS00370	SM00354	helix_turn _helix lactose operon repressor
SPB_RS00375	SM00642	Alpha-amylase domain
SPB_RS00390	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPB_RS00410	SM01120	SPB_RS00410
SPB_RS00440	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS00445	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00450	SM00448	cheY-homologous receiver domain
SPB_RS00450	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS00455	SM00091	PAS domain
SPB_RS00455	SM00387	Histidine kinase-like ATPases
SPB_RS00455	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS00460	SM00849	Metallo-beta-lactamase superfamily
SPB_RS00465	SM00358	Double-stranded RNA binding motif
SPB_RS00465	SM00535	Ribonuclease III family
SPB_RS00470	SM00968	SMC proteins Flexible Hinge Domain
SPB_RS00485	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00485	SM00962	SRP54-type protein, GTPase domain
SPB_RS00485	SM00963	SRP54-type protein, helical bundle domain
SPB_RS00520	SM00448	cheY-homologous receiver domain
SPB_RS00520	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS00525	SM00387	Histidine kinase-like ATPases
SPB_RS00525	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS00545	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00555	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS00555	SM00732	Likely ribonuclease with RNase H fold.
SPB_RS00560	SM00731	SprT homologues.
SPB_RS00645	SM01221	SPB_RS00645
SPB_RS00645	SM01222	SPB_RS00645
SPB_RS00680	SM01043	Bacterial transcriptional activator domain
SPB_RS00695	SM00855	Phosphoglycerate mutase family
SPB_RS00770	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPB_RS00785	SM00831	Cation transporter/ATPase, N-terminus
SPB_RS00820	SM00937	SPB_RS00820
SPB_RS00825	SM00382	ATPases associated with a variety of cellular activities
SPB_RS00835	SM00849	Metallo-beta-lactamase superfamily
SPB_RS00840	SM00479	SPB_RS00840
SPB_RS00840	SM00491	SPB_RS00840
SPB_RS00885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS00885	SM00866	SPB_RS00885
SPB_RS00900	SM01133	SPB_RS00900
SPB_RS00905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS00905	SM00866	SPB_RS00905
SPB_RS00970	SM00830	Chorismate mutase type II
SPB_RS01005	SM00387	Histidine kinase-like ATPases
SPB_RS01005	SM00433	TopoisomeraseII
SPB_RS01035	SM01192	SPB_RS01035
SPB_RS01035	SM01193	SPB_RS01035
SPB_RS01145	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPB_RS01145	SM00292	breast cancer carboxy-terminal domain
SPB_RS01145	SM00532	Ligase N family
SPB_RS01150	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPB_RS01155	SM00642	Alpha-amylase domain
SPB_RS01160	SM00642	Alpha-amylase domain
SPB_RS01215	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01240	SM00892	DNA/RNA non-specific endonuclease
SPB_RS01255	SM00873	B3/4 domain
SPB_RS01255	SM00874	tRNA synthetase B5 domain
SPB_RS01255	SM00896	Ferredoxin-fold anticodon binding domain
SPB_RS01275	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01300	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS01300	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
SPB_RS01315	SM00400	zinc finger
SPB_RS01315	SM00493	SPB_RS01315
SPB_RS01350	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01385	SM00646	SPB_RS01385
SPB_RS01405	SM00257	Lysin motif
SPB_RS01475	SM00981	SPB_RS01475
SPB_RS01480	SM00854	Bacterial capsule synthesis protein PGA_cap
SPB_RS01510	SM00363	S4 RNA-binding domain
SPB_RS01530	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
SPB_RS01535	SM00851	MGS-like domain
SPB_RS01535	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
SPB_RS01535	SM01209	SPB_RS01535
SPB_RS01545	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01610	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPB_RS01610	SM01134	SPB_RS01610
SPB_RS01625	SM00047	Lysozyme subfamily 2
SPB_RS01630	SM00047	Lysozyme subfamily 2
SPB_RS01660	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01670	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01675	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01680	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
SPB_RS01700	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01705	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01750	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01750	SM00994	ClpX C4-type zinc finger
SPB_RS01750	SM01086	C-terminal, D2-small domain, of ClpB protein
SPB_RS01765	SM00382	ATPases associated with a variety of cellular activities
SPB_RS01765	SM01086	C-terminal, D2-small domain, of ClpB protein
SPB_RS01865	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
SPB_RS01865	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
SPB_RS01865	SM00493	SPB_RS01865
SPB_RS01895	SM00487	DEAD-like helicases superfamily
SPB_RS01940	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
SPB_RS01940	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
SPB_RS01960	SM00857	Resolvase, N terminal domain
SPB_RS01970	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPB_RS01995	SM00100	Cyclic nucleotide-monophosphate binding domain
SPB_RS01995	SM00419	helix_turn_helix, cAMP Regulatory protein
SPB_RS02020	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS02085	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPB_RS02085	SM01134	SPB_RS02085
SPB_RS02105	SM01133	SPB_RS02105
SPB_RS02130	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS02170	SM00450	Rhodanese Homology Domain
SPB_RS02175	SM00287	Bacterial SH3 domain homologues
SPB_RS02210	SM00905	Dihydroneopterin aldolase
SPB_RS02225	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02245	SM00448	cheY-homologous receiver domain
SPB_RS02260	SM00919	Malic enzyme, NAD binding domain
SPB_RS02260	SM01274	SPB_RS02260
SPB_RS02270	SM01061	CAT RNA binding domain
SPB_RS02285	SM00342	helix_turn_helix, arabinose operon control protein
SPB_RS02310	SM00855	Phosphoglycerate mutase family
SPB_RS02315	SM00855	Phosphoglycerate mutase family
SPB_RS02345	SM00881	CoA binding domain
SPB_RS02365	SM01400	SPB_RS02365
SPB_RS02370	SM01118	SPB_RS02370
SPB_RS02375	SM00954	Region found in RelA / SpoT proteins
SPB_RS02415	SM00829	Enoylreductase
SPB_RS02420	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS02425	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02440	SM01240	SPB_RS02440
SPB_RS02470	SM00937	SPB_RS02470
SPB_RS02520	SM00434	DNA Topoisomerase IV
SPB_RS02565	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS02570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS02570	SM00866	SPB_RS02570
SPB_RS02620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS02620	SM00866	SPB_RS02620
SPB_RS02630	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02630	SM00962	SRP54-type protein, GTPase domain
SPB_RS02630	SM00963	SRP54-type protein, helical bundle domain
SPB_RS02635	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS02665	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS02710	SM00829	Enoylreductase
SPB_RS02725	SM00900	SPB_RS02725
SPB_RS02785	SM00387	Histidine kinase-like ATPases
SPB_RS02790	SM00448	cheY-homologous receiver domain
SPB_RS02790	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS02800	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02840	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
SPB_RS02840	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
SPB_RS02840	SM00493	SPB_RS02840
SPB_RS02850	SM01266	SPB_RS02850
SPB_RS02865	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS02895	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPB_RS02910	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02915	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS02925	SM01130	SPB_RS02925
SPB_RS02930	SM00859	Semialdehyde dehydrogenase, NAD binding domain
SPB_RS02935	SM00155	Phospholipase D. Active site motifs.
SPB_RS02980	SM00382	ATPases associated with a variety of cellular activities
SPB_RS02995	SM01133	SPB_RS02995
SPB_RS03000	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
SPB_RS03020	SM00387	Histidine kinase-like ATPases
SPB_RS03020	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS03025	SM00448	cheY-homologous receiver domain
SPB_RS03025	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS03040	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03045	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03080	SM00904	Riboflavin kinase
SPB_RS03110	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS03180	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS03185	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03240	SM00481	DNA polymerase alpha chain like domain
SPB_RS03245	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS03250	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03265	SM00644	SPB_RS03265
SPB_RS03355	SM00507	HNH nucleases
SPB_RS03435	SM00990	SPB_RS03435
SPB_RS03440	SM00942	Primase C terminal 1 (PriCT-1)
SPB_RS03440	SM00943	Bifunctional DNA primase/polymerase, N-terminal
SPB_RS03455	SM00490	helicase superfamily c-terminal domain
SPB_RS03470	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS03480	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS03495	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS03525	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS03550	SM00434	DNA Topoisomerase IV
SPB_RS03555	SM00387	Histidine kinase-like ATPases
SPB_RS03555	SM00433	TopoisomeraseII
SPB_RS03560	SM01207	SPB_RS03560
SPB_RS03570	SM00986	Uracil DNA glycosylase superfamily
SPB_RS03570	SM00987	UreE urease accessory protein, C-terminal domain 
SPB_RS03580	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS03610	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPB_RS03745	SM00465	GIY-YIG type nucleases (URI domain)
SPB_RS03815	SM00422	helix_turn_helix, mercury resistance
SPB_RS03820	SM00829	Enoylreductase
SPB_RS03855	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPB_RS03870	SM00838	Elongation factor G C-terminus
SPB_RS03880	SM00562	SPB_RS03880
SPB_RS03900	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPB_RS03950	SM00861	Transketolase, pyrimidine binding domain
SPB_RS03960	SM00382	ATPases associated with a variety of cellular activities
SPB_RS03975	SM00849	Metallo-beta-lactamase superfamily
SPB_RS03980	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04010	SM00028	Tetratricopeptide repeats
SPB_RS04075	SM00478	endonuclease III
SPB_RS04075	SM00525	SPB_RS04075
SPB_RS04130	SM00450	Rhodanese Homology Domain
SPB_RS04135	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
SPB_RS04135	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
SPB_RS04160	SM00354	helix_turn _helix lactose operon repressor
SPB_RS04180	SM00642	Alpha-amylase domain
SPB_RS04210	SM00487	DEAD-like helicases superfamily
SPB_RS04210	SM00490	helicase superfamily c-terminal domain
SPB_RS04215	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS04215	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
SPB_RS04220	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04230	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04260	SM00363	S4 RNA-binding domain
SPB_RS04285	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04305	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS04310	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04320	SM00387	Histidine kinase-like ATPases
SPB_RS04320	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS04325	SM00448	cheY-homologous receiver domain
SPB_RS04325	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS04335	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS04405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS04405	SM00895	SPB_RS04405
SPB_RS04430	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04450	SM00487	DEAD-like helicases superfamily
SPB_RS04450	SM00490	helicase superfamily c-terminal domain
SPB_RS04500	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPB_RS04560	SM00363	S4 RNA-binding domain
SPB_RS04590	SM00849	Metallo-beta-lactamase superfamily
SPB_RS04595	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPB_RS04600	SM00563	Phosphate acyltransferases
SPB_RS04620	SM00487	DEAD-like helicases superfamily
SPB_RS04620	SM00490	helicase superfamily c-terminal domain
SPB_RS04655	SM00493	SPB_RS04655
SPB_RS04680	SM00855	Phosphoglycerate mutase family
SPB_RS04700	SM00411	bacterial (prokaryotic) histone like domain
SPB_RS04765	SM00899	SPB_RS04765
SPB_RS04770	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04785	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04785	SM01086	C-terminal, D2-small domain, of ClpB protein
SPB_RS04810	SM00363	S4 RNA-binding domain
SPB_RS04830	SM00864	Tubulin/FtsZ family, GTPase domain
SPB_RS04830	SM00865	Tubulin/FtsZ family, C-terminal domain
SPB_RS04835	SM00842	Cell division protein FtsA
SPB_RS04860	SM00838	Elongation factor G C-terminus
SPB_RS04865	SM00450	Rhodanese Homology Domain
SPB_RS04885	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04890	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04925	SM00382	ATPases associated with a variety of cellular activities
SPB_RS04940	SM00354	helix_turn _helix lactose operon repressor
SPB_RS04995	SM00100	Cyclic nucleotide-monophosphate binding domain
SPB_RS04995	SM00419	helix_turn_helix, cAMP Regulatory protein
SPB_RS05005	SM00873	B3/4 domain
SPB_RS05030	SM00507	HNH nucleases
SPB_RS05090	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPB_RS05100	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS05150	SM01120	SPB_RS05150
SPB_RS05150	SM01121	SPB_RS05150
SPB_RS05165	SM00387	Histidine kinase-like ATPases
SPB_RS05165	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS05170	SM00448	cheY-homologous receiver domain
SPB_RS05170	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS05185	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05195	SM00855	Phosphoglycerate mutase family
SPB_RS05255	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05270	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05290	SM00900	SPB_RS05290
SPB_RS05455	SM00487	DEAD-like helicases superfamily
SPB_RS05455	SM00490	helicase superfamily c-terminal domain
SPB_RS05470	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS05480	SM00421	helix_turn_helix, Lux Regulon
SPB_RS05480	SM00448	cheY-homologous receiver domain
SPB_RS05495	SM00220	Serine/Threonine protein kinases, catalytic domain
SPB_RS05495	SM00740	SPB_RS05495
SPB_RS05500	SM00331	Sigma factor PP2C-like phosphatases
SPB_RS05500	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
SPB_RS05515	SM00487	DEAD-like helicases superfamily
SPB_RS05515	SM00490	helicase superfamily c-terminal domain
SPB_RS05520	SM01409	SPB_RS05520
SPB_RS05525	SM00072	Guanylate kinase homologues.
SPB_RS05530	SM00322	K homology RNA-binding domain
SPB_RS05530	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPB_RS05565	SM00981	SPB_RS05565
SPB_RS05630	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05640	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS05645	SM00487	DEAD-like helicases superfamily
SPB_RS05645	SM00490	helicase superfamily c-terminal domain
SPB_RS05655	SM00740	SPB_RS05655
SPB_RS05685	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05695	SM00861	Transketolase, pyrimidine binding domain
SPB_RS05805	SM00173	Ras subfamily of RAS small GTPases
SPB_RS05820	SM00322	K homology RNA-binding domain
SPB_RS05850	SM00382	ATPases associated with a variety of cellular activities
SPB_RS05935	SM00878	Biotin carboxylase C-terminal domain
SPB_RS05950	SM00825	Beta-ketoacyl synthase
SPB_RS05955	SM00822	SPB_RS05955
SPB_RS05960	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
SPB_RS05980	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS05990	SM00271	DnaJ molecular chaperone homology domain
SPB_RS06010	SM00047	Lysozyme subfamily 2
SPB_RS06020	SM00855	Phosphoglycerate mutase family
SPB_RS06065	SM00845	GatB domain
SPB_RS06090	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPB_RS06100	SM00450	Rhodanese Homology Domain
SPB_RS06105	SM00450	Rhodanese Homology Domain
SPB_RS06110	SM00450	Rhodanese Homology Domain
SPB_RS06145	SM00870	SPB_RS06145
SPB_RS06155	SM00487	DEAD-like helicases superfamily
SPB_RS06155	SM00490	helicase superfamily c-terminal domain
SPB_RS06160	SM01005	Alanine racemase, C-terminal domain
SPB_RS06170	SM00957	SecA DEAD-like domain
SPB_RS06170	SM00958	SecA preprotein cross-linking domain
SPB_RS06205	SM00640	Glycosyl hydrolases family 32
SPB_RS06210	SM00354	helix_turn _helix lactose operon repressor
SPB_RS06225	SM00841	Elongation factor P, C-terminal
SPB_RS06225	SM01185	SPB_RS06225
SPB_RS06240	SM00382	ATPases associated with a variety of cellular activities
SPB_RS06270	SM00478	endonuclease III
SPB_RS06285	SM00463	Small MutS-related domain
SPB_RS06285	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPB_RS06285	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPB_RS06310	SM00382	ATPases associated with a variety of cellular activities
SPB_RS06335	SM00642	Alpha-amylase domain
SPB_RS06355	SM00632	SPB_RS06355
SPB_RS06355	SM00642	Alpha-amylase domain
SPB_RS06355	SM01065	Starch binding domain
SPB_RS06385	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
SPB_RS06385	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
SPB_RS06395	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS06400	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS06410	SM00640	Glycosyl hydrolases family 32
SPB_RS06430	SM00354	helix_turn _helix lactose operon repressor
SPB_RS06520	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS06520	SM00895	SPB_RS06520
SPB_RS06535	SM00764	Citrate lyase ligase C-terminal domain
SPB_RS06570	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS06635	SM00354	helix_turn _helix lactose operon repressor
SPB_RS06650	SM01061	CAT RNA binding domain
SPB_RS06665	SM00640	Glycosyl hydrolases family 32
SPB_RS06670	SM00342	helix_turn_helix, arabinose operon control protein
SPB_RS06705	SM00479	SPB_RS06705
SPB_RS06745	SM00849	Metallo-beta-lactamase superfamily
SPB_RS06750	SM00382	ATPases associated with a variety of cellular activities
SPB_RS06755	SM00382	ATPases associated with a variety of cellular activities
SPB_RS06775	SM01230	SPB_RS06775
SPB_RS06780	SM00422	helix_turn_helix, mercury resistance
SPB_RS06795	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
SPB_RS06800	SM00838	Elongation factor G C-terminus
SPB_RS06800	SM00889	Elongation factor G, domain IV
SPB_RS06840	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
SPB_RS06870	SM00650	Ribosomal RNA adenine dimethylases
SPB_RS06875	SM00493	SPB_RS06875
SPB_RS06920	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS06955	SM01130	SPB_RS06955
SPB_RS06995	SM00850	LytTr DNA-binding domain
SPB_RS07005	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07015	SM00393	Putative single-stranded nucleic acids-binding domain
SPB_RS07015	SM01245	SPB_RS07015
SPB_RS07040	SM00448	cheY-homologous receiver domain
SPB_RS07040	SM00850	LytTr DNA-binding domain
SPB_RS07075	SM00947	Carbonic anhydrase
SPB_RS07080	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07095	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS07130	SM00942	Primase C terminal 1 (PriCT-1)
SPB_RS07135	SM00885	D5 N terminal like
SPB_RS07215	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPB_RS07300	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPB_RS07305	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07310	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07360	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07390	SM01131	SPB_RS07390
SPB_RS07400	SM01091	Transporter associated domain
SPB_RS07415	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07420	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPB_RS07425	SM00014	Acid phosphatase homologues
SPB_RS07440	SM01234	SPB_RS07440
SPB_RS07445	SM00363	S4 RNA-binding domain
SPB_RS07505	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPB_RS07545	SM00487	DEAD-like helicases superfamily
SPB_RS07545	SM00490	helicase superfamily c-terminal domain
SPB_RS07570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPB_RS07570	SM00387	Histidine kinase-like ATPases
SPB_RS07570	SM00388	His Kinase A (phosphoacceptor) domain
SPB_RS07575	SM00448	cheY-homologous receiver domain
SPB_RS07575	SM00862	Transcriptional regulatory protein, C terminal
SPB_RS07615	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07615	SM00930	SPB_RS07615
SPB_RS07630	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS07645	SM00422	helix_turn_helix, mercury resistance
SPB_RS07675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPB_RS07685	SM01103	SPB_RS07685
SPB_RS07735	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07740	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07760	SM00936	Penicillin-binding protein 5, C-terminal domain 
SPB_RS07765	SM00936	Penicillin-binding protein 5, C-terminal domain 
SPB_RS07795	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07820	SM00062	Bacterial periplasmic substrate-binding proteins
SPB_RS07825	SM00382	ATPases associated with a variety of cellular activities
SPB_RS07830	SM00244	prohibitin homologues
SPB_RS07835	SM01120	SPB_RS07835
SPB_RS07835	SM01121	SPB_RS07835
SPB_RS07880	SM00448	cheY-homologous receiver domain
SPB_RS07880	SM00850	LytTr DNA-binding domain
SPB_RS07885	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SPB_RS07885	SM00387	Histidine kinase-like ATPases
SPB_RS07980	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08050	SM00100	Cyclic nucleotide-monophosphate binding domain
SPB_RS08050	SM00419	helix_turn_helix, cAMP Regulatory protein
SPB_RS08075	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08090	SM00849	Metallo-beta-lactamase superfamily
SPB_RS08160	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS08185	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS08210	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS08295	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPB_RS08310	SM00840	SPB_RS08310
SPB_RS08325	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS08325	SM00322	K homology RNA-binding domain
SPB_RS08330	SM01387	SPB_RS08330
SPB_RS08370	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS08375	SM00479	SPB_RS08375
SPB_RS08375	SM00481	DNA polymerase alpha chain like domain
SPB_RS08405	SM01323	SPB_RS08405
SPB_RS08430	SM00354	helix_turn _helix lactose operon repressor
SPB_RS08435	SM01266	SPB_RS08435
SPB_RS08440	SM00642	Alpha-amylase domain
SPB_RS08445	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08455	SM00642	Alpha-amylase domain
SPB_RS08480	SM00342	helix_turn_helix, arabinose operon control protein
SPB_RS08490	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPB_RS08490	SM00954	Region found in RelA / SpoT proteins
SPB_RS08520	SM00354	helix_turn _helix lactose operon repressor
SPB_RS08525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPB_RS08550	SM00357	Cold shock protein domain
SPB_RS08560	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08575	SM00855	Phosphoglycerate mutase family
SPB_RS08625	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS08670	SM00421	helix_turn_helix, Lux Regulon
SPB_RS08670	SM00448	cheY-homologous receiver domain
SPB_RS08730	SM00422	helix_turn_helix, mercury resistance
SPB_RS08770	SM00422	helix_turn_helix, mercury resistance
SPB_RS08775	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08845	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS08855	SM00098	Alkaline phosphatase homologues
SPB_RS08870	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08880	SM00382	ATPases associated with a variety of cellular activities
SPB_RS08940	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPB_RS08940	SM01134	SPB_RS08940
SPB_RS08955	SM00788	Adenylosuccinate synthetase
SPB_RS09000	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09060	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS09115	SM00663	RNA polymerase I subunit A N-terminus
SPB_RS09130	SM00363	S4 RNA-binding domain
SPB_RS09140	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09145	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPB_RS09160	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09165	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09275	SM00267	diguanylate cyclase
SPB_RS09290	SM01350	SPB_RS09290
SPB_RS09340	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09350	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS09355	SM01022	SPB_RS09355
SPB_RS09365	SM00342	helix_turn_helix, arabinose operon control protein
SPB_RS09365	SM00871	Bacterial transcription activator, effector binding domain
SPB_RS09495	SM00662	RNA polymerases D
SPB_RS09510	SM00316	Ribosomal protein S1-like RNA-binding domain
SPB_RS09565	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPB_RS09570	SM01374	SPB_RS09570
SPB_RS09590	SM00322	K homology RNA-binding domain
SPB_RS09605	SM01382	SPB_RS09605
SPB_RS09605	SM01383	SPB_RS09605
SPB_RS09625	SM01403	SPB_RS09625
SPB_RS09650	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
SPB_RS09655	SM00226	Low molecular weight phosphatase family
SPB_RS09660	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09670	SM00998	Adenylosuccinate lyase C-terminus
SPB_RS09685	SM01001	AIR carboxylase
SPB_RS09690	SM01209	SPB_RS09690
SPB_RS09690	SM01210	SPB_RS09690
SPB_RS09710	SM00798	AICARFT/IMPCHase bienzyme
SPB_RS09710	SM00851	MGS-like domain
SPB_RS09730	SM01211	SPB_RS09730
SPB_RS09760	SM01400	SPB_RS09760
SPB_RS09890	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09900	SM00977	TilS substrate C-terminal domain
SPB_RS09915	SM00363	S4 RNA-binding domain
SPB_RS09925	SM00487	DEAD-like helicases superfamily
SPB_RS09925	SM00490	helicase superfamily c-terminal domain
SPB_RS09925	SM00982	SPB_RS09925
SPB_RS09925	SM01058	CarD-like/TRCF domain
SPB_RS09940	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS09950	SM00480	DNA polymerase III beta subunit
SPB_RS09955	SM00382	ATPases associated with a variety of cellular activities
SPB_RS09955	SM00760	Bacterial dnaA protein helix-turn-helix domain
SPB_RS09960	SM00470	ParB-like nuclease domain
SPB_RS09965	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SPB_RS09995	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10010	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPB_RS10010	SM01240	SPB_RS10010
SPB_RS10045	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10050	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10090	SM01228	SPB_RS10090
SPB_RS10115	SM00363	S4 RNA-binding domain
SPB_RS10115	SM01390	SPB_RS10115
SPB_RS10170	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPB_RS10210	SM00882	Coenzyme A transferase
SPB_RS10225	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS10275	SM00836	DALR anticodon binding domain
SPB_RS10275	SM01016	Arginyl tRNA synthetase N terminal dom
SPB_RS10290	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPB_RS10290	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPB_RS10295	SM00853	MutL C terminal dimerisation domain
SPB_RS10295	SM01340	SPB_RS10295
SPB_RS10305	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPB_RS10315	SM00852	Probable molybdopterin binding domain
SPB_RS10320	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10335	SM00732	Likely ribonuclease with RNase H fold.
SPB_RS10385	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPB_RS10385	SM00866	SPB_RS10385
SPB_RS10395	SM00642	Alpha-amylase domain
SPB_RS10420	SM00861	Transketolase, pyrimidine binding domain
SPB_RS10455	SM00892	DNA/RNA non-specific endonuclease
SPB_RS10465	SM00903	Flavin reductase like domain
SPB_RS10490	SM00357	Cold shock protein domain
SPB_RS10500	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10500	SM01086	C-terminal, D2-small domain, of ClpB protein
SPB_RS10505	SM00883	Chaperonin 10 Kd subunit
SPB_RS10555	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
SPB_RS10555	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPB_RS10590	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPB_RS10600	SM01007	Class II Aldolase and Adducin N-terminal domain
SPB_RS10615	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPB_RS10620	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10630	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
SPB_RS10630	SM00474	3'-5' exonuclease
SPB_RS10630	SM00475	5'-3' exonuclease
SPB_RS10630	SM00482	DNA polymerase A domain
SPB_RS10635	SM00881	CoA binding domain
SPB_RS10665	SM00849	Metallo-beta-lactamase superfamily
SPB_RS10690	SM01208	SPB_RS10690
SPB_RS10765	SM00984	UDP binding domain
SPB_RS10800	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10805	SM00382	ATPases associated with a variety of cellular activities
SPB_RS10855	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS10900	SM00530	Helix-turn-helix XRE-family like proteins 
SPB_RS10920	SM00530	Helix-turn-helix XRE-family like proteins 
