locus-tag class description SPD_RS00005 PF00308 Bacterial dnaA protein SPD_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SPD_RS00010 PF02767 DNA polymerase III beta subunit, central domain SPD_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SPD_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SPD_RS00020 PF01926 50S ribosome-binding GTPase SPD_RS00020 PF06071 Protein of unknown function (DUF933) SPD_RS00025 PF01195 Peptidyl-tRNA hydrolase SPD_RS00030 PF00271 Helicase conserved C-terminal domain SPD_RS00030 PF17757 UvrB interaction domain SPD_RS00030 PF02559 CarD-like/TRCF domain SPD_RS00030 PF03461 TRCF domain SPD_RS00030 PF00270 DEAD/DEAH box helicase SPD_RS00035 PF01479 S4 domain SPD_RS00055 PF11734 TilS substrate C-terminal domain SPD_RS00055 PF01171 PP-loop family SPD_RS00060 PF00156 Phosphoribosyl transferase domain SPD_RS00065 PF01434 Peptidase family M41 SPD_RS00065 PF06480 FtsH Extracellular SPD_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SPD_RS00065 PF17862 AAA+ lid domain SPD_RS00115 PF13358 DDE superfamily endonuclease SPD_RS00140 PF00709 Adenylosuccinate synthetase SPD_RS00145 PF14437 MafB19-like deaminase SPD_RS00150 PF00692 dUTPase SPD_RS00165 PF00484 Carbonic anhydrase SPD_RS00180 PF14572 Phosphoribosyl synthetase-associated domain SPD_RS00180 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPD_RS00200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPD_RS00200 PF01367 5'-3' exonuclease, C-terminal SAM fold SPD_RS00200 PF00476 DNA polymerase family A SPD_RS00205 PF13380 CoA binding domain SPD_RS00210 PF03601 Conserved hypothetical protein 698 SPD_RS00215 PF00155 Aminotransferase class I and II SPD_RS00220 PF02565 Recombination protein O C terminal SPD_RS00220 PF11967 Recombination protein O N terminal SPD_RS00225 PF02504 Fatty acid synthesis protein SPD_RS00230 PF00550 Phosphopantetheine attachment site SPD_RS00250 PF13683 Integrase core domain SPD_RS00250 PF01610 Transposase SPD_RS00265 PF00005 ABC transporter SPD_RS00265 PF00664 ABC transporter transmembrane region SPD_RS00265 PF03412 Peptidase C39 family SPD_RS00275 PF01259 SAICAR synthetase SPD_RS00280 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SPD_RS00280 PF02769 AIR synthase related protein, C-terminal domain SPD_RS00280 PF00586 AIR synthase related protein, N-terminal domain SPD_RS00285 PF00156 Phosphoribosyl transferase domain SPD_RS00290 PF00586 AIR synthase related protein, N-terminal domain SPD_RS00290 PF02769 AIR synthase related protein, C-terminal domain SPD_RS00295 PF00551 Formyl transferase SPD_RS00300 PF04892 VanZ like family SPD_RS00305 PF02142 MGS-like domain SPD_RS00305 PF01808 AICARFT/IMPCHase bienzyme SPD_RS00310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPD_RS00310 PF02843 Phosphoribosylglycinamide synthetase, C domain SPD_RS00310 PF02844 Phosphoribosylglycinamide synthetase, N domain SPD_RS00315 PF00731 AIR carboxylase SPD_RS00320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SPD_RS00320 PF02222 ATP-grasp domain SPD_RS00320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPD_RS00330 PF10397 Adenylosuccinate lyase C-terminus SPD_RS00330 PF00206 Lyase SPD_RS00335 PF07501 G5 domain SPD_RS00335 PF00728 Glycosyl hydrolase family 20, catalytic domain SPD_RS00335 PF00746 LPXTG cell wall anchor motif SPD_RS00335 PF04650 YSIRK type signal peptide SPD_RS00340 PF07702 UTRA domain SPD_RS00340 PF00392 Bacterial regulatory proteins, gntR family SPD_RS00345 PF01301 Glycosyl hydrolases family 35 SPD_RS00350 PF03830 PTS system sorbose subfamily IIB component SPD_RS00355 PF03609 PTS system sorbose-specific iic component SPD_RS00360 PF03613 PTS system mannose/fructose/sorbose family IID component SPD_RS00370 PF01380 SIS domain SPD_RS00375 PF01263 Aldose 1-epimerase SPD_RS00380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPD_RS00385 PF02583 Metal-sensitive transcriptional repressor SPD_RS00405 PF02386 Cation transport protein SPD_RS00410 PF02080 TrkA-C domain SPD_RS00410 PF02254 TrkA-N domain SPD_RS00415 PF00535 Glycosyl transferase family 2 SPD_RS00430 PF00072 Response regulator receiver domain SPD_RS00430 PF00486 Transcriptional regulatory protein, C terminal SPD_RS00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS00435 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS00440 PF00163 Ribosomal protein S4/S9 N-terminal domain SPD_RS00440 PF01479 S4 domain SPD_RS00460 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS00465 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS00475 PF12010 Domain of unknown function (DUF3502) SPD_RS00480 PF12368 Rhodanase C-terminal SPD_RS00480 PF00581 Rhodanese-like domain SPD_RS00480 PF17773 UPF0176 acylphosphatase like domain SPD_RS00505 PF10400 Virulence activator alpha C-term SPD_RS00505 PF03551 Transcriptional regulator PadR-like family SPD_RS00520 PF02719 Polysaccharide biosynthesis protein SPD_RS00530 PF13419 Haloacid dehalogenase-like hydrolase SPD_RS00535 PF03313 Serine dehydratase alpha chain SPD_RS00540 PF03315 Serine dehydratase beta chain SPD_RS00540 PF01842 ACT domain SPD_RS00565 PF00005 ABC transporter SPD_RS00565 PF02687 FtsX-like permease family SPD_RS00565 PF12704 MacB-like periplasmic core domain SPD_RS00570 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS00575 PF00764 Arginosuccinate synthase SPD_RS00580 PF14698 Argininosuccinate lyase C-terminal SPD_RS00580 PF00206 Lyase SPD_RS00585 PF01381 Helix-turn-helix SPD_RS00595 PF00005 ABC transporter SPD_RS00595 PF03412 Peptidase C39 family SPD_RS00595 PF00664 ABC transporter transmembrane region SPD_RS00695 PF00293 NUDIX domain SPD_RS00700 PF01134 Glucose inhibited division protein A SPD_RS00700 PF13932 GidA associated domain SPD_RS00705 PF00753 Metallo-beta-lactamase superfamily SPD_RS00705 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPD_RS00705 PF17770 Ribonuclease J C-terminal domain SPD_RS00710 PF07288 Protein of unknown function (DUF1447) SPD_RS00730 PF00814 Glycoprotease family SPD_RS00740 PF00814 Glycoprotease family SPD_RS00745 PF01610 Transposase SPD_RS00745 PF13683 Integrase core domain SPD_RS00770 PF00534 Glycosyl transferases group 1 SPD_RS00770 PF13439 Glycosyltransferase Family 4 SPD_RS00775 PF00535 Glycosyl transferase family 2 SPD_RS00780 PF03412 Peptidase C39 family SPD_RS00780 PF00005 ABC transporter SPD_RS00780 PF00664 ABC transporter transmembrane region SPD_RS00795 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPD_RS00795 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPD_RS00800 PF01381 Helix-turn-helix SPD_RS00830 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS00835 PF03180 NLPA lipoprotein SPD_RS00840 PF01546 Peptidase family M20/M25/M40 SPD_RS00840 PF07687 Peptidase dimerisation domain SPD_RS00845 PF09383 NIL domain SPD_RS00845 PF00005 ABC transporter SPD_RS00850 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS00865 PF06580 Histidine kinase SPD_RS00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS00865 PF00672 HAMP domain SPD_RS00865 PF02743 Cache domain SPD_RS00870 PF00072 Response regulator receiver domain SPD_RS00870 PF12833 Helix-turn-helix domain SPD_RS00880 PF07972 NrdI Flavodoxin like SPD_RS00895 PF04397 LytTr DNA-binding domain SPD_RS00900 PF01119 DNA mismatch repair protein, C-terminal domain SPD_RS00900 PF08676 MutL C terminal dimerisation domain SPD_RS00905 PF00885 6,7-dimethyl-8-ribityllumazine synthase SPD_RS00910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SPD_RS00910 PF00925 GTP cyclohydrolase II SPD_RS00915 PF00677 Lumazine binding domain SPD_RS00920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPD_RS00920 PF01872 RibD C-terminal domain SPD_RS00925 PF07499 RuvA, C-terminal domain SPD_RS00925 PF01330 RuvA N terminal domain SPD_RS00930 PF03352 Methyladenine glycosylase SPD_RS00955 PF00005 ABC transporter SPD_RS00955 PF17760 UvrA interaction domain SPD_RS00955 PF17755 UvrA DNA-binding domain SPD_RS00960 PF00557 Metallopeptidase family M24 SPD_RS00960 PF01321 Creatinase/Prolidase N-terminal domain SPD_RS00965 PF03960 ArsC family SPD_RS00975 PF06135 IreB regulatory phosphoprotein SPD_RS00980 PF03652 Holliday junction resolvase SPD_RS00985 PF06949 Protein of unknown function (DUF1292) SPD_RS00990 PF08245 Mur ligase middle domain SPD_RS00990 PF02875 Mur ligase family, glutamate ligase domain SPD_RS01000 PF13091 PLD-like domain SPD_RS01015 PF03477 ATP cone domain SPD_RS01015 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPD_RS01040 PF00338 Ribosomal protein S10p/S20e SPD_RS01045 PF00297 Ribosomal protein L3 SPD_RS01050 PF00573 Ribosomal protein L4/L1 family SPD_RS01055 PF00276 Ribosomal protein L23 SPD_RS01060 PF00181 Ribosomal Proteins L2, RNA binding domain SPD_RS01060 PF03947 Ribosomal Proteins L2, C-terminal domain SPD_RS01065 PF00203 Ribosomal protein S19 SPD_RS01070 PF00237 Ribosomal protein L22p/L17e SPD_RS01075 PF07650 KH domain SPD_RS01075 PF00189 Ribosomal protein S3, C-terminal domain SPD_RS01080 PF00252 Ribosomal protein L16p/L10e SPD_RS01085 PF00831 Ribosomal L29 protein SPD_RS01090 PF00366 Ribosomal protein S17 SPD_RS01095 PF00238 Ribosomal protein L14p/L23e SPD_RS01100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SPD_RS01100 PF00467 KOW motif SPD_RS01105 PF00281 Ribosomal protein L5 SPD_RS01105 PF00673 ribosomal L5P family C-terminus SPD_RS01110 PF00253 Ribosomal protein S14p/S29e SPD_RS01115 PF00410 Ribosomal protein S8 SPD_RS01120 PF00347 Ribosomal protein L6 SPD_RS01125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SPD_RS01130 PF03719 Ribosomal protein S5, C-terminal domain SPD_RS01130 PF00333 Ribosomal protein S5, N-terminal domain SPD_RS01135 PF00327 Ribosomal protein L30p/L7e SPD_RS01140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SPD_RS01145 PF00344 SecY translocase SPD_RS01155 PF01176 Translation initiation factor 1A / IF-1 SPD_RS01160 PF00444 Ribosomal protein L36 SPD_RS01165 PF00416 Ribosomal protein S13/S18 SPD_RS01170 PF00411 Ribosomal protein S11 SPD_RS01175 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPD_RS01175 PF01000 RNA polymerase Rpb3/RpoA insert domain SPD_RS01175 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPD_RS01180 PF01196 Ribosomal protein L17 SPD_RS01200 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS01205 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS01210 PF08402 TOBE domain SPD_RS01210 PF00005 ABC transporter SPD_RS01230 PF04055 Radical SAM superfamily SPD_RS01235 PF00455 DeoR C terminal sensor domain SPD_RS01235 PF08220 DeoR-like helix-turn-helix domain SPD_RS01240 PF13936 Helix-turn-helix domain SPD_RS01240 PF04198 Putative sugar-binding domain SPD_RS01245 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPD_RS01250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS01255 PF02378 Phosphotransferase system, EIIC SPD_RS01260 PF02901 Pyruvate formate lyase-like SPD_RS01260 PF01228 Glycine radical SPD_RS01265 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPD_RS01270 PF00465 Iron-containing alcohol dehydrogenase SPD_RS01275 PF00133 tRNA synthetases class I (I, L, M and V) SPD_RS01275 PF08264 Anticodon-binding domain of tRNA SPD_RS01275 PF13603 Leucyl-tRNA synthetase, Domain 2 SPD_RS01275 PF09334 tRNA synthetases class I (M) SPD_RS01295 PF17864 RuvB AAA lid domain SPD_RS01295 PF05491 RuvB C-terminal winged helix domain SPD_RS01295 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPD_RS01305 PF01255 Putative undecaprenyl diphosphate synthase SPD_RS01315 PF02163 Peptidase family M50 SPD_RS01320 PF03129 Anticodon binding domain SPD_RS01320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPD_RS01320 PF04073 Aminoacyl-tRNA editing domain SPD_RS01325 PF00232 Glycosyl hydrolase family 1 SPD_RS01330 PF01380 SIS domain SPD_RS01340 PF00128 Alpha amylase, catalytic domain SPD_RS01340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPD_RS01340 PF03714 Bacterial pullanase-associated domain SPD_RS01345 PF00164 Ribosomal protein S12/S23 SPD_RS01350 PF00177 Ribosomal protein S7p/S5e SPD_RS01355 PF00679 Elongation factor G C-terminus SPD_RS01355 PF03764 Elongation factor G, domain IV SPD_RS01355 PF00009 Elongation factor Tu GTP binding domain SPD_RS01355 PF03144 Elongation factor Tu domain 2 SPD_RS01355 PF14492 Elongation Factor G, domain II SPD_RS01360 PF14480 DNA polymerase III polC-type N-terminus I SPD_RS01360 PF11490 DNA polymerase III polC-type N-terminus II SPD_RS01360 PF00929 Exonuclease SPD_RS01360 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPD_RS01360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPD_RS01360 PF02811 PHP domain SPD_RS01380 PF02073 Thermophilic metalloprotease (M29) SPD_RS01385 PF04226 Transglycosylase associated protein SPD_RS01390 PF00849 RNA pseudouridylate synthase SPD_RS01390 PF01479 S4 domain SPD_RS01400 PF03051 Peptidase C1-like family SPD_RS01405 PF03613 PTS system mannose/fructose/sorbose family IID component SPD_RS01410 PF03609 PTS system sorbose-specific iic component SPD_RS01415 PF03610 PTS system fructose IIA component SPD_RS01415 PF03830 PTS system sorbose subfamily IIB component SPD_RS01420 PF08240 Alcohol dehydrogenase GroES-like domain SPD_RS01420 PF00107 Zinc-binding dehydrogenase SPD_RS01430 PF00860 Permease family SPD_RS01440 PF00809 Pterin binding enzyme SPD_RS01445 PF08245 Mur ligase middle domain SPD_RS01445 PF02875 Mur ligase family, glutamate ligase domain SPD_RS01450 PF01227 GTP cyclohydrolase I SPD_RS01455 PF02152 Dihydroneopterin aldolase SPD_RS01455 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPD_RS01465 PF00572 Ribosomal protein L13 SPD_RS01470 PF00380 Ribosomal protein S9/S16 SPD_RS01485 PF00232 Glycosyl hydrolase family 1 SPD_RS01490 PF04193 PQ loop repeat SPD_RS01495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS01500 PF05043 Mga helix-turn-helix domain SPD_RS01500 PF08279 HTH domain SPD_RS01500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS01500 PF00874 PRD domain SPD_RS01505 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPD_RS01515 PF02378 Phosphotransferase system, EIIC SPD_RS01525 PF01055 Glycosyl hydrolases family 31 SPD_RS01525 PF13802 Galactose mutarotase-like SPD_RS01525 PF16338 Domain of unknown function (DUF4968) SPD_RS01525 PF17137 Domain of unknown function (DUF5110) SPD_RS01530 PF00255 Glutathione peroxidase SPD_RS01535 PF02278 Polysaccharide lyase family 8, super-sandwich domain SPD_RS01535 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SPD_RS01535 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SPD_RS01540 PF01797 Transposase IS200 like SPD_RS01570 PF07470 Glycosyl Hydrolase Family 88 SPD_RS01575 PF03830 PTS system sorbose subfamily IIB component SPD_RS01580 PF03609 PTS system sorbose-specific iic component SPD_RS01585 PF03613 PTS system mannose/fructose/sorbose family IID component SPD_RS01600 PF00356 Bacterial regulatory proteins, lacI family SPD_RS01620 PF01795 MraW methylase family SPD_RS01630 PF03717 Penicillin-binding Protein dimerisation domain SPD_RS01630 PF00905 Penicillin binding protein transpeptidase domain SPD_RS01630 PF03793 PASTA domain SPD_RS01635 PF00953 Glycosyl transferase family 4 SPD_RS01635 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPD_RS01645 PF17871 AAA lid domain SPD_RS01645 PF07724 AAA domain (Cdc48 subfamily) SPD_RS01645 PF00004 ATPase family associated with various cellular activities (AAA) SPD_RS01645 PF10431 C-terminal, D2-small domain, of ClpB protein SPD_RS01650 PF02664 S-Ribosylhomocysteinase (LuxS) SPD_RS01655 PF08903 Domain of unknown function (DUF1846) SPD_RS01660 PF16657 Maltogenic Amylase, C-terminal domain SPD_RS01660 PF00128 Alpha amylase, catalytic domain SPD_RS01665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS01690 PF02706 Chain length determinant protein SPD_RS01695 PF13614 AAA domain SPD_RS01700 PF02397 Bacterial sugar transferase SPD_RS01710 PF00535 Glycosyl transferase family 2 SPD_RS01735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPD_RS01735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPD_RS01735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPD_RS01740 PF03275 UDP-galactopyranose mutase SPD_RS01745 PF00483 Nucleotidyl transferase SPD_RS01750 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SPD_RS01755 PF16363 GDP-mannose 4,6 dehydratase SPD_RS01760 PF04321 RmlD substrate binding domain SPD_RS01770 PF13007 Transposase C of IS166 homeodomain SPD_RS01770 PF03050 Transposase IS66 family SPD_RS01770 PF13817 IS66 C-terminal element SPD_RS01770 PF13005 zinc-finger binding domain of transposase IS66 SPD_RS01780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS01785 PF12905 Endo-alpha-N-acetylgalactosaminidase SPD_RS01785 PF17974 Galactose-binding domain-like SPD_RS01785 PF17451 Glycosyl hydrolase 101 beta sandwich domain SPD_RS01785 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal SPD_RS01785 PF18080 Galactose mutarotase-like fold domain SPD_RS01785 PF04650 YSIRK type signal peptide SPD_RS01785 PF00754 F5/8 type C domain SPD_RS01790 PF00905 Penicillin binding protein transpeptidase domain SPD_RS01790 PF00912 Transglycosylase SPD_RS01795 PF03838 Recombination protein U SPD_RS01800 PF06908 YspA SLOG family SPD_RS01805 PF05103 DivIVA protein SPD_RS01815 PF02926 THUMP domain SPD_RS01815 PF01170 Putative RNA methylase family UPF0020 SPD_RS01820 PF18708 MapZ extracellular C-terminal domain 2 SPD_RS01820 PF18041 MapZ extracellular domain 1 SPD_RS01825 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SPD_RS01825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SPD_RS01830 PF00486 Transcriptional regulatory protein, C terminal SPD_RS01830 PF00072 Response regulator receiver domain SPD_RS01840 PF00288 GHMP kinases N terminal domain SPD_RS01840 PF08544 GHMP kinases C terminal SPD_RS01840 PF10509 Galactokinase galactose-binding signature SPD_RS01850 PF08544 GHMP kinases C terminal SPD_RS01850 PF00288 GHMP kinases N terminal domain SPD_RS01855 PF01070 FMN-dependent dehydrogenase SPD_RS01865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS01865 PF07730 Histidine kinase SPD_RS01870 PF00072 Response regulator receiver domain SPD_RS01870 PF00196 Bacterial regulatory proteins, luxR family SPD_RS01910 PF00665 Integrase core domain SPD_RS01910 PF13333 Integrase core domain SPD_RS01930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS01930 PF02378 Phosphotransferase system, EIIC SPD_RS01935 PF08279 HTH domain SPD_RS01935 PF05043 Mga helix-turn-helix domain SPD_RS01935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS01940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS01945 PF01232 Mannitol dehydrogenase Rossmann domain SPD_RS01945 PF08125 Mannitol dehydrogenase C-terminal domain SPD_RS01960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPD_RS01960 PF05698 Bacterial trigger factor protein (TF) C-terminus SPD_RS01960 PF05697 Bacterial trigger factor protein (TF) SPD_RS01965 PF13538 UvrD-like helicase C-terminal domain SPD_RS01965 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SPD_RS01965 PF14490 Helix-hairpin-helix containing domain SPD_RS01970 PF10502 Signal peptidase, peptidase S26 SPD_RS01975 PF11858 Domain of unknown function (DUF3378) SPD_RS01975 PF01351 Ribonuclease HII SPD_RS01990 PF01713 Smr domain SPD_RS01990 PF00488 MutS domain V SPD_RS01995 PF01235 Sodium:alanine symporter family SPD_RS02010 PF02403 Seryl-tRNA synthetase N-terminal domain SPD_RS02010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPD_RS02020 PF13840 ACT domain SPD_RS02020 PF00696 Amino acid kinase family SPD_RS02025 PF00378 Enoyl-CoA hydratase/isomerase SPD_RS02030 PF01047 MarR family SPD_RS02035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPD_RS02035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPD_RS02040 PF00550 Phosphopantetheine attachment site SPD_RS02045 PF03060 Nitronate monooxygenase SPD_RS02050 PF00698 Acyl transferase domain SPD_RS02060 PF00109 Beta-ketoacyl synthase, N-terminal domain SPD_RS02060 PF02801 Beta-ketoacyl synthase, C-terminal domain SPD_RS02065 PF00364 Biotin-requiring enzyme SPD_RS02070 PF07977 FabA-like domain SPD_RS02075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPD_RS02075 PF02785 Biotin carboxylase C-terminal domain SPD_RS02075 PF00289 Biotin carboxylase, N-terminal domain SPD_RS02080 PF01039 Carboxyl transferase domain SPD_RS02085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPD_RS02095 PF01029 NusB family SPD_RS02100 PF03780 Asp23 family, cell envelope-related function SPD_RS02105 PF08207 Elongation factor P (EF-P) KOW-like domain SPD_RS02105 PF01132 Elongation factor P (EF-P) OB domain SPD_RS02105 PF09285 Elongation factor P, C-terminal SPD_RS02110 PF02637 GatB domain SPD_RS02110 PF02934 GatB/GatE catalytic domain SPD_RS02115 PF01425 Amidase SPD_RS02120 PF02686 Glu-tRNAGln amidotransferase C subunit SPD_RS02125 PF00009 Elongation factor Tu GTP binding domain SPD_RS02125 PF03144 Elongation factor Tu domain 2 SPD_RS02125 PF16658 Class II release factor RF3, C-terminal domain SPD_RS02130 PF01501 Glycosyl transferase family 8 SPD_RS02135 PF00830 Ribosomal L28 family SPD_RS02140 PF03780 Asp23 family, cell envelope-related function SPD_RS02145 PF13684 Dihydroxyacetone kinase family SPD_RS02145 PF02734 DAK2 domain SPD_RS02150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPD_RS02150 PF00205 Thiamine pyrophosphate enzyme, central domain SPD_RS02150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPD_RS02155 PF01842 ACT domain SPD_RS02155 PF10369 Small subunit of acetolactate synthase SPD_RS02160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SPD_RS02160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SPD_RS02175 PF00585 C-terminal regulatory domain of Threonine dehydratase SPD_RS02175 PF00291 Pyridoxal-phosphate dependent enzyme SPD_RS02185 PF00005 ABC transporter SPD_RS02190 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS02215 PF02673 Bacitracin resistance protein BacA SPD_RS02220 PF00817 impB/mucB/samB family SPD_RS02220 PF11798 IMS family HHH motif SPD_RS02220 PF11799 impB/mucB/samB family C-terminal domain SPD_RS02225 PF02901 Pyruvate formate lyase-like SPD_RS02225 PF01228 Glycine radical SPD_RS02255 PF00480 ROK family SPD_RS02260 PF02378 Phosphotransferase system, EIIC SPD_RS02270 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPD_RS02275 PF00232 Glycosyl hydrolase family 1 SPD_RS02280 PF02378 Phosphotransferase system, EIIC SPD_RS02280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS02285 PF02386 Cation transport protein SPD_RS02290 PF02254 TrkA-N domain SPD_RS02290 PF02080 TrkA-C domain SPD_RS02300 PF07155 ECF-type riboflavin transporter, S component SPD_RS02310 PF00005 ABC transporter SPD_RS02310 PF12558 ATP-binding cassette cobalt transporter SPD_RS02320 PF00588 SpoU rRNA Methylase family SPD_RS02325 PF12822 ECF transporter, substrate-specific component SPD_RS02330 PF01569 PAP2 superfamily SPD_RS02340 PF00583 Acetyltransferase (GNAT) family SPD_RS02345 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPD_RS02350 PF00117 Glutamine amidotransferase class-I SPD_RS02350 PF06418 CTP synthase N-terminus SPD_RS02355 PF02690 Na+/Pi-cotransporter SPD_RS02360 PF04650 YSIRK type signal peptide SPD_RS02360 PF00746 LPXTG cell wall anchor motif SPD_RS02360 PF00728 Glycosyl hydrolase family 20, catalytic domain SPD_RS02360 PF07501 G5 domain SPD_RS02365 PF00162 Phosphoglycerate kinase SPD_RS02370 PF06081 Aromatic acid exporter family member 1 SPD_RS02375 PF13411 MerR HTH family regulatory protein SPD_RS02380 PF03951 Glutamine synthetase, beta-Grasp domain SPD_RS02380 PF00120 Glutamine synthetase, catalytic domain SPD_RS02390 PF01420 Type I restriction modification DNA specificity domain SPD_RS02400 PF02899 Phage integrase, N-terminal SAM-like domain SPD_RS02400 PF00589 Phage integrase family SPD_RS02405 PF01420 Type I restriction modification DNA specificity domain SPD_RS02410 PF12161 HsdM N-terminal domain SPD_RS02410 PF02384 N-6 DNA Methylase SPD_RS02415 PF04851 Type III restriction enzyme, res subunit SPD_RS02415 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) SPD_RS02415 PF08463 EcoEI R protein C-terminal SPD_RS02415 PF00271 Helicase conserved C-terminal domain SPD_RS02430 PF01628 HrcA protein C terminal domain SPD_RS02430 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPD_RS02435 PF01025 GrpE SPD_RS02440 PF00012 Hsp70 protein SPD_RS02450 PF01556 DnaJ C terminal domain SPD_RS02450 PF00226 DnaJ domain SPD_RS02450 PF00684 DnaJ central domain SPD_RS02465 PF01230 HIT domain SPD_RS02470 PF00005 ABC transporter SPD_RS02495 PF17203 Single cache domain 3 SPD_RS02495 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPD_RS02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS02495 PF00989 PAS fold SPD_RS02510 PF00664 ABC transporter transmembrane region SPD_RS02510 PF00005 ABC transporter SPD_RS02510 PF03412 Peptidase C39 family SPD_RS02515 PF03412 Peptidase C39 family SPD_RS02515 PF00005 ABC transporter SPD_RS02515 PF00664 ABC transporter transmembrane region SPD_RS02535 PF02517 CPBP intramembrane metalloprotease SPD_RS02545 PF02390 Putative methyltransferase SPD_RS02550 PF17384 RimP C-terminal SH3 domain SPD_RS02550 PF02576 RimP N-terminal domain SPD_RS02555 PF13184 NusA-like KH domain SPD_RS02555 PF08529 NusA N-terminal domain SPD_RS02555 PF00575 S1 RNA binding domain SPD_RS02560 PF04296 Protein of unknown function (DUF448) SPD_RS02565 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPD_RS02570 PF11987 Translation-initiation factor 2 SPD_RS02570 PF04760 Translation initiation factor IF-2, N-terminal region SPD_RS02570 PF00009 Elongation factor Tu GTP binding domain SPD_RS02575 PF02033 Ribosome-binding factor A SPD_RS02625 PF00958 GMP synthase C terminal domain SPD_RS02625 PF00117 Glutamine amidotransferase class-I SPD_RS02625 PF03352 Methyladenine glycosylase SPD_RS02625 PF13302 Acetyltransferase (GNAT) domain SPD_RS02625 PF13673 Acetyltransferase (GNAT) domain SPD_RS02635 PF10458 Valyl tRNA synthetase tRNA binding arm SPD_RS02635 PF00133 tRNA synthetases class I (I, L, M and V) SPD_RS02635 PF08264 Anticodon-binding domain of tRNA SPD_RS02645 PF02661 Fic/DOC family SPD_RS02645 PF17841 BID domain of Bartonella effector protein (Bep) SPD_RS02655 PF13276 HTH-like domain SPD_RS02655 PF00665 Integrase core domain SPD_RS02655 PF13333 Integrase core domain SPD_RS02695 PF03123 CAT RNA binding domain SPD_RS02695 PF00874 PRD domain SPD_RS02700 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPD_RS02700 PF00367 phosphotransferase system, EIIB SPD_RS02700 PF02378 Phosphotransferase system, EIIC SPD_RS02705 PF00232 Glycosyl hydrolase family 1 SPD_RS02710 PF01409 tRNA synthetases class II core domain (F) SPD_RS02710 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPD_RS02715 PF00583 Acetyltransferase (GNAT) family SPD_RS02720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SPD_RS02720 PF03483 B3/4 domain SPD_RS02720 PF03147 Ferredoxin-fold anticodon binding domain SPD_RS02720 PF01588 Putative tRNA binding domain SPD_RS02720 PF03484 tRNA synthetase B5 domain SPD_RS02740 PF01381 Helix-turn-helix SPD_RS02745 PF08267 Cobalamin-independent synthase, N-terminal domain SPD_RS02745 PF01717 Cobalamin-independent synthase, Catalytic domain SPD_RS02750 PF02219 Methylenetetrahydrofolate reductase SPD_RS02755 PF03725 3' exoribonuclease family, domain 2 SPD_RS02755 PF00013 KH domain SPD_RS02755 PF01138 3' exoribonuclease family, domain 1 SPD_RS02755 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPD_RS02755 PF00575 S1 RNA binding domain SPD_RS02760 PF06426 Serine acetyltransferase, N-terminal SPD_RS02760 PF00132 Bacterial transferase hexapeptide (six repeats) SPD_RS02770 PF09190 DALR domain SPD_RS02770 PF01406 tRNA synthetases class I (C) catalytic domain SPD_RS02775 PF00636 Ribonuclease III domain SPD_RS02780 PF13556 PucR C-terminal helix-turn-helix domain SPD_RS02795 PF12704 MacB-like periplasmic core domain SPD_RS02795 PF02687 FtsX-like permease family SPD_RS02800 PF00005 ABC transporter SPD_RS02805 PF12704 MacB-like periplasmic core domain SPD_RS02805 PF02687 FtsX-like permease family SPD_RS02810 PF00486 Transcriptional regulatory protein, C terminal SPD_RS02810 PF00072 Response regulator receiver domain SPD_RS02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS02815 PF00672 HAMP domain SPD_RS02815 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS02820 PF01116 Fructose-bisphosphate aldolase class-II SPD_RS02825 PF00970 Oxidoreductase FAD-binding domain SPD_RS02825 PF00111 2Fe-2S iron-sulfur cluster binding domain SPD_RS02825 PF00175 Oxidoreductase NAD-binding domain SPD_RS02830 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS02835 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS02840 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS02845 PF00005 ABC transporter SPD_RS02850 PF00005 ABC transporter SPD_RS02855 PF17768 RecJ OB domain SPD_RS02855 PF02272 DHHA1 domain SPD_RS02855 PF01368 DHH family SPD_RS02855 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SPD_RS02860 PF17770 Ribonuclease J C-terminal domain SPD_RS02860 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPD_RS02860 PF00753 Metallo-beta-lactamase superfamily SPD_RS02865 PF00756 Putative esterase SPD_RS02885 PF01541 GIY-YIG catalytic domain SPD_RS02885 PF02151 UvrB/uvrC motif SPD_RS02885 PF08459 UvrC Helix-hairpin-helix N-terminal SPD_RS02895 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS02900 PF00881 Nitroreductase family SPD_RS02905 PF01546 Peptidase family M20/M25/M40 SPD_RS02910 PF03167 Uracil DNA glycosylase superfamily SPD_RS02920 PF05525 Branched-chain amino acid transport protein SPD_RS02925 PF05343 M42 glutamyl aminopeptidase SPD_RS02940 PF03946 Ribosomal protein L11, N-terminal domain SPD_RS02940 PF00298 Ribosomal protein L11, RNA binding domain SPD_RS02945 PF00687 Ribosomal protein L1p/L10e family SPD_RS02960 PF00005 ABC transporter SPD_RS02990 PF00082 Subtilase family SPD_RS03005 PF03611 PTS system sugar-specific permease component SPD_RS03010 PF00703 Glycosyl hydrolases family 2 SPD_RS03010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPD_RS03010 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPD_RS03010 PF16355 Domain of unknown function (DUF4982) SPD_RS03010 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPD_RS03030 PF16199 Radical_SAM C-terminal domain SPD_RS03030 PF04055 Radical SAM superfamily SPD_RS03035 PF16199 Radical_SAM C-terminal domain SPD_RS03035 PF04055 Radical SAM superfamily SPD_RS03040 PF06962 Putative rRNA methylase SPD_RS03050 PF00999 Sodium/hydrogen exchanger family SPD_RS03060 PF02683 Cytochrome C biogenesis protein transmembrane region SPD_RS03065 PF08534 Redoxin SPD_RS03070 PF01641 SelR domain SPD_RS03070 PF01625 Peptide methionine sulfoxide reductase SPD_RS03080 PF12833 Helix-turn-helix domain SPD_RS03080 PF00072 Response regulator receiver domain SPD_RS03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS03085 PF06580 Histidine kinase SPD_RS03085 PF00672 HAMP domain SPD_RS03085 PF02743 Cache domain SPD_RS03090 PF04260 Protein of unknown function (DUF436) SPD_RS03095 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPD_RS03095 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPD_RS03095 PF00746 LPXTG cell wall anchor motif SPD_RS03095 PF07501 G5 domain SPD_RS03100 PF00425 chorismate binding enzyme SPD_RS03100 PF04715 Anthranilate synthase component I, N terminal region SPD_RS03110 PF00480 ROK family SPD_RS03115 PF00303 Thymidylate synthase SPD_RS03130 PF01926 50S ribosome-binding GTPase SPD_RS03130 PF16360 GTP-binding GTPase Middle Region SPD_RS03130 PF13167 GTP-binding GTPase N-terminal SPD_RS03135 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPD_RS03135 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPD_RS03140 PF12706 Beta-lactamase superfamily domain SPD_RS03140 PF00753 Metallo-beta-lactamase superfamily SPD_RS03145 PF00106 short chain dehydrogenase SPD_RS03150 PF03466 LysR substrate binding domain SPD_RS03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPD_RS03160 PF00581 Rhodanese-like domain SPD_RS03170 PF00849 RNA pseudouridylate synthase SPD_RS03170 PF01479 S4 domain SPD_RS03175 PF14492 Elongation Factor G, domain II SPD_RS03175 PF03144 Elongation factor Tu domain 2 SPD_RS03175 PF00679 Elongation factor G C-terminus SPD_RS03175 PF00009 Elongation factor Tu GTP binding domain SPD_RS03195 PF00005 ABC transporter SPD_RS03200 PF02875 Mur ligase family, glutamate ligase domain SPD_RS03200 PF08245 Mur ligase middle domain SPD_RS03205 PF04101 Glycosyltransferase family 28 C-terminal domain SPD_RS03205 PF03033 Glycosyltransferase family 28 N-terminal domain SPD_RS03210 PF08478 POTRA domain, FtsQ-type SPD_RS03245 PF13936 Helix-turn-helix domain SPD_RS03245 PF00665 Integrase core domain SPD_RS03250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPD_RS03255 PF00156 Phosphoribosyl transferase domain SPD_RS03280 PF00005 ABC transporter SPD_RS03285 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS03295 PF00005 ABC transporter SPD_RS03300 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS03305 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS03310 PF01070 FMN-dependent dehydrogenase SPD_RS03315 PF01336 OB-fold nucleic acid binding domain SPD_RS03315 PF00152 tRNA synthetases class II (D, K and N) SPD_RS03320 PF01070 FMN-dependent dehydrogenase SPD_RS03330 PF02110 Hydroxyethylthiazole kinase family SPD_RS03335 PF02581 Thiamine monophosphate synthase SPD_RS03345 PF00005 ABC transporter SPD_RS03355 PF03070 TENA/THI-4/PQQC family SPD_RS03365 PF02110 Hydroxyethylthiazole kinase family SPD_RS03370 PF02581 Thiamine monophosphate synthase SPD_RS03375 PF08543 Phosphomethylpyrimidine kinase SPD_RS03380 PF03965 Penicillinase repressor SPD_RS03390 PF00403 Heavy-metal-associated domain SPD_RS03395 PF00205 Thiamine pyrophosphate enzyme, central domain SPD_RS03395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPD_RS03395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPD_RS03405 PF13358 DDE superfamily endonuclease SPD_RS03415 PF00232 Glycosyl hydrolase family 1 SPD_RS03420 PF01238 Phosphomannose isomerase type I SPD_RS03425 PF00209 Sodium:neurotransmitter symporter family SPD_RS03430 PF13411 MerR HTH family regulatory protein SPD_RS03435 PF00293 NUDIX domain SPD_RS03435 PF13344 Haloacid dehalogenase-like hydrolase SPD_RS03445 PF02645 Uncharacterised protein, DegV family COG1307 SPD_RS03455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPD_RS03465 PF00574 Clp protease SPD_RS03470 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SPD_RS03475 PF13458 Periplasmic binding protein SPD_RS03480 PF02653 Branched-chain amino acid transport system / permease component SPD_RS03485 PF02653 Branched-chain amino acid transport system / permease component SPD_RS03485 PF11862 Domain of unknown function (DUF3382) SPD_RS03490 PF00005 ABC transporter SPD_RS03490 PF12399 Branched-chain amino acid ATP-binding cassette transporter SPD_RS03495 PF00005 ABC transporter SPD_RS03500 PF01743 Poly A polymerase head domain SPD_RS03500 PF00571 CBS domain SPD_RS03505 PF03462 PCRF domain SPD_RS03505 PF00472 RF-1 domain SPD_RS03510 PF00005 ABC transporter SPD_RS03515 PF18075 FtsX extracellular domain SPD_RS03515 PF02687 FtsX-like permease family SPD_RS03520 PF02378 Phosphotransferase system, EIIC SPD_RS03520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPD_RS03520 PF00367 phosphotransferase system, EIIB SPD_RS03525 PF03372 Endonuclease/Exonuclease/phosphatase family SPD_RS03530 PF00270 DEAD/DEAH box helicase SPD_RS03530 PF00271 Helicase conserved C-terminal domain SPD_RS03535 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPD_RS03535 PF02772 S-adenosylmethionine synthetase, central domain SPD_RS03535 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPD_RS03540 PF01180 Dihydroorotate dehydrogenase SPD_RS03550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPD_RS03550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPD_RS03555 PF06265 Protein of unknown function (DUF1027) SPD_RS03560 PF04055 Radical SAM superfamily SPD_RS03570 PF12848 ABC transporter SPD_RS03570 PF00005 ABC transporter SPD_RS03575 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPD_RS03585 PF00886 Ribosomal protein S16 SPD_RS03605 PF05239 PRC-barrel domain SPD_RS03605 PF01782 RimM N-terminal domain SPD_RS03610 PF01746 tRNA (Guanine-1)-methyltransferase SPD_RS03615 PF03477 ATP cone domain SPD_RS03615 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPD_RS03625 PF02229 Transcriptional Coactivator p15 (PC4) SPD_RS03635 PF02632 BioY family SPD_RS03640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPD_RS03640 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS03645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SPD_RS03650 PF00005 ABC transporter SPD_RS03655 PF12704 MacB-like periplasmic core domain SPD_RS03655 PF02687 FtsX-like permease family SPD_RS03660 PF01588 Putative tRNA binding domain SPD_RS03660 PF09334 tRNA synthetases class I (M) SPD_RS03675 PF00248 Aldo/keto reductase family SPD_RS03710 PF01433 Peptidase family M1 domain SPD_RS03710 PF11838 ERAP1-like C-terminal domain SPD_RS03715 PF00072 Response regulator receiver domain SPD_RS03715 PF00486 Transcriptional regulatory protein, C terminal SPD_RS03720 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS03735 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPD_RS03735 PF02811 PHP domain SPD_RS03735 PF00929 Exonuclease SPD_RS03735 PF11490 DNA polymerase III polC-type N-terminus II SPD_RS03735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPD_RS03735 PF14579 Helix-hairpin-helix motif SPD_RS03740 PF01098 Cell cycle protein SPD_RS03745 PF01965 DJ-1/PfpI family SPD_RS03755 PF01751 Toprim domain SPD_RS03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS03755 PF00986 DNA gyrase B subunit, carboxyl terminus SPD_RS03755 PF00204 DNA gyrase B SPD_RS03760 PF06160 Septation ring formation regulator, EzrA SPD_RS03770 PF13358 DDE superfamily endonuclease SPD_RS03785 PF00293 NUDIX domain SPD_RS03795 PF10431 C-terminal, D2-small domain, of ClpB protein SPD_RS03795 PF17871 AAA lid domain SPD_RS03795 PF07724 AAA domain (Cdc48 subfamily) SPD_RS03795 PF00004 ATPase family associated with various cellular activities (AAA) SPD_RS03800 PF08796 Protein of unknown function (DUF1797) SPD_RS03805 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS03810 PF00005 ABC transporter SPD_RS03815 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPD_RS03815 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPD_RS03820 PF01256 Carbohydrate kinase SPD_RS03825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPD_RS03830 PF01676 Metalloenzyme superfamily SPD_RS03840 PF01048 Phosphorylase superfamily SPD_RS03855 PF17440 Thiol-activated cytolysin beta sandwich domain SPD_RS03855 PF01289 Thiol-activated cytolysin SPD_RS03865 PF01048 Phosphorylase superfamily SPD_RS03875 PF01649 Ribosomal protein S20 SPD_RS03880 PF00485 Phosphoribulokinase / Uridine kinase family SPD_RS03890 PF05175 Methyltransferase small domain SPD_RS03895 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SPD_RS03895 PF02885 Glycosyl transferase family, helical bundle domain SPD_RS03895 PF00591 Glycosyl transferase family, a/b domain SPD_RS03900 PF01791 DeoC/LacD family aldolase SPD_RS03905 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPD_RS03910 PF02608 ABC transporter substrate-binding protein PnrA-like SPD_RS03915 PF00005 ABC transporter SPD_RS03920 PF02653 Branched-chain amino acid transport system / permease component SPD_RS03925 PF02653 Branched-chain amino acid transport system / permease component SPD_RS03945 PF13333 Integrase core domain SPD_RS03945 PF00665 Integrase core domain SPD_RS03950 PF02660 Glycerol-3-phosphate acyltransferase SPD_RS03955 PF00986 DNA gyrase B subunit, carboxyl terminus SPD_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS03955 PF00204 DNA gyrase B SPD_RS03955 PF01751 Toprim domain SPD_RS03965 PF03989 DNA gyrase C-terminal domain, beta-propeller SPD_RS03965 PF00521 DNA gyrase/topoisomerase IV, subunit A SPD_RS03970 PF01063 Amino-transferase class IV SPD_RS03975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS03990 PF01470 Pyroglutamyl peptidase SPD_RS04010 PF00575 S1 RNA binding domain SPD_RS04030 PF13185 GAF domain SPD_RS04035 PF12169 DNA polymerase III subunits gamma and tau domain III SPD_RS04045 PF00005 ABC transporter SPD_RS04050 PF01458 Uncharacterized protein family (UPF0051) SPD_RS04055 PF00266 Aminotransferase class-V SPD_RS04060 PF01592 NifU-like N terminal domain SPD_RS04065 PF01458 Uncharacterized protein family (UPF0051) SPD_RS04075 PF00768 D-alanyl-D-alanine carboxypeptidase SPD_RS04075 PF07943 Penicillin-binding protein 5, C-terminal domain SPD_RS04080 PF01594 AI-2E family transporter SPD_RS04090 PF00455 DeoR C terminal sensor domain SPD_RS04090 PF08220 DeoR-like helix-turn-helix domain SPD_RS04095 PF00294 pfkB family carbohydrate kinase SPD_RS04100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS04100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS04105 PF01580 FtsK/SpoIIIE family SPD_RS04105 PF09397 Ftsk gamma domain SPD_RS04105 PF17854 FtsK alpha domain SPD_RS04115 PF00266 Aminotransferase class-V SPD_RS04120 PF02926 THUMP domain SPD_RS04120 PF02568 Thiamine biosynthesis protein (ThiI) SPD_RS04145 PF02384 N-6 DNA Methylase SPD_RS04155 PF08463 EcoEI R protein C-terminal SPD_RS04155 PF04851 Type III restriction enzyme, res subunit SPD_RS04155 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPD_RS04155 PF00271 Helicase conserved C-terminal domain SPD_RS04165 PF01316 Arginine repressor, DNA binding domain SPD_RS04165 PF02863 Arginine repressor, C-terminal domain SPD_RS04170 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPD_RS04170 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPD_RS04170 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPD_RS04175 PF02811 PHP domain SPD_RS04175 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPD_RS04175 PF01336 OB-fold nucleic acid binding domain SPD_RS04175 PF14579 Helix-hairpin-helix motif SPD_RS04175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPD_RS04180 PF00365 Phosphofructokinase SPD_RS04185 PF02887 Pyruvate kinase, alpha/beta domain SPD_RS04185 PF00224 Pyruvate kinase, barrel domain SPD_RS04225 PF09323 Domain of unknown function (DUF1980) SPD_RS04230 PF03773 Predicted permease SPD_RS04245 PF08942 Domain of unknown function (DUF1919) SPD_RS04250 PF17674 HHH domain SPD_RS04250 PF00575 S1 RNA binding domain SPD_RS04250 PF09371 Tex-like protein N-terminal domain SPD_RS04250 PF16921 Tex protein YqgF-like domain SPD_RS04255 PF10263 SprT-like family SPD_RS04255 PF17283 SprT-like zinc ribbon domain SPD_RS04275 PF00005 ABC transporter SPD_RS04280 PF02687 FtsX-like permease family SPD_RS04290 PF13936 Helix-turn-helix domain SPD_RS04295 PF01276 Orn/Lys/Arg decarboxylase, major domain SPD_RS04295 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SPD_RS04310 PF17284 Spermidine synthase tetramerisation domain SPD_RS04315 PF03435 Saccharopine dehydrogenase NADP binding domain SPD_RS04315 PF16653 Saccharopine dehydrogenase C-terminal domain SPD_RS04320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SPD_RS04325 PF04371 Porphyromonas-type peptidyl-arginine deiminase SPD_RS04330 PF00795 Carbon-nitrogen hydrolase SPD_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPD_RS04355 PF03466 LysR substrate binding domain SPD_RS04360 PF01252 Signal peptidase (SPase) II SPD_RS04365 PF01479 S4 domain SPD_RS04365 PF00849 RNA pseudouridylate synthase SPD_RS04375 PF00696 Amino acid kinase family SPD_RS04375 PF01472 PUA domain SPD_RS04380 PF00171 Aldehyde dehydrogenase family SPD_RS04385 PF03807 NADP oxidoreductase coenzyme F420-dependent SPD_RS04385 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPD_RS04390 PF02223 Thymidylate kinase SPD_RS04395 PF09115 DNA polymerase III, delta subunit, C terminal SPD_RS04400 PF06156 Initiation control protein YabA SPD_RS04405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPD_RS04435 PF01134 Glucose inhibited division protein A SPD_RS04440 PF00696 Amino acid kinase family SPD_RS04445 PF01765 Ribosome recycling factor SPD_RS04450 PF17783 CvfB-like winged helix domain SPD_RS04450 PF13509 S1 domain SPD_RS04455 PF06855 YozE SAM-like fold SPD_RS04460 PF02562 PhoH-like protein SPD_RS04475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPD_RS04475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPD_RS04480 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPD_RS04480 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPD_RS04485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPD_RS04485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPD_RS04490 PF13302 Acetyltransferase (GNAT) domain SPD_RS04495 PF10531 SLBB domain SPD_RS04500 PF00753 Metallo-beta-lactamase superfamily SPD_RS04500 PF03772 Competence protein SPD_RS04500 PF13567 Domain of unknown function (DUF4131) SPD_RS04510 PF00005 ABC transporter SPD_RS04520 PF05198 Translation initiation factor IF-3, N-terminal domain SPD_RS04520 PF00707 Translation initiation factor IF-3, C-terminal domain SPD_RS04525 PF01632 Ribosomal protein L35 SPD_RS04530 PF00453 Ribosomal protein L20 SPD_RS04535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPD_RS04540 PF00175 Oxidoreductase NAD-binding domain SPD_RS04540 PF00970 Oxidoreductase FAD-binding domain SPD_RS04540 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SPD_RS04545 PF01180 Dihydroorotate dehydrogenase SPD_RS04550 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain SPD_RS04550 PF01473 Putative cell wall binding repeat SPD_RS04550 PF17890 Peptidoglycan hydrolase LytB WW-like domain SPD_RS04550 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPD_RS04555 PF05670 NFACT protein RNA binding domain SPD_RS04560 PF02130 Uncharacterized protein family UPF0054 SPD_RS04565 PF01219 Prokaryotic diacylglycerol kinase SPD_RS04570 PF07650 KH domain SPD_RS04570 PF01926 50S ribosome-binding GTPase SPD_RS04575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPD_RS04575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPD_RS04575 PF06827 Zinc finger found in FPG and IleRS SPD_RS04580 PF01121 Dephospho-CoA kinase SPD_RS04585 PF00083 Sugar (and other) transporter SPD_RS04585 PF07690 Major Facilitator Superfamily SPD_RS04590 PF00471 Ribosomal protein L33 SPD_RS04600 PF17876 Cold shock domain SPD_RS04600 PF08206 Ribonuclease B OB domain SPD_RS04600 PF00773 RNB domain SPD_RS04600 PF00575 S1 RNA binding domain SPD_RS04605 PF01668 SmpB protein SPD_RS04610 PF09313 Domain of unknown function (DUF1971) SPD_RS04610 PF03848 Tellurite resistance protein TehB SPD_RS04620 PF08439 Oligopeptidase F SPD_RS04620 PF01432 Peptidase family M3 SPD_RS04625 PF01596 O-methyltransferase SPD_RS04630 PF13145 PPIC-type PPIASE domain SPD_RS04650 PF04073 Aminoacyl-tRNA editing domain SPD_RS04665 PF00483 Nucleotidyl transferase SPD_RS04665 PF00132 Bacterial transferase hexapeptide (six repeats) SPD_RS04665 PF14602 Hexapeptide repeat of succinyl-transferase SPD_RS04670 PF00293 NUDIX domain SPD_RS04680 PF01048 Phosphorylase superfamily SPD_RS04685 PF08279 HTH domain SPD_RS04685 PF04394 Protein of unknown function, DUF536 SPD_RS04690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPD_RS04690 PF11490 DNA polymerase III polC-type N-terminus II SPD_RS04690 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPD_RS04690 PF14579 Helix-hairpin-helix motif SPD_RS04690 PF00929 Exonuclease SPD_RS04690 PF02811 PHP domain SPD_RS04695 PF03009 Glycerophosphoryl diester phosphodiesterase family SPD_RS04720 PF02683 Cytochrome C biogenesis protein transmembrane region SPD_RS04725 PF08534 Redoxin SPD_RS04730 PF13520 Amino acid permease SPD_RS04735 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPD_RS04735 PF01297 Zinc-uptake complex component A periplasmic SPD_RS04770 PF01546 Peptidase family M20/M25/M40 SPD_RS04770 PF07687 Peptidase dimerisation domain SPD_RS04775 PF00762 Ferrochelatase SPD_RS04780 PF01741 Large-conductance mechanosensitive channel, MscL SPD_RS04790 PF06177 QueT transporter SPD_RS04800 PF01118 Semialdehyde dehydrogenase, NAD binding domain SPD_RS04800 PF02774 Semialdehyde dehydrogenase, dimerisation domain SPD_RS04805 PF00701 Dihydrodipicolinate synthetase family SPD_RS04810 PF10396 GTP-binding protein TrmE N-terminus SPD_RS04810 PF01926 50S ribosome-binding GTPase SPD_RS04810 PF12631 MnmE helical domain SPD_RS04815 PF01361 Tautomerase enzyme SPD_RS04820 PF00265 Thymidine kinase SPD_RS04830 PF03462 PCRF domain SPD_RS04830 PF00472 RF-1 domain SPD_RS04835 PF05175 Methyltransferase small domain SPD_RS04850 PF00464 Serine hydroxymethyltransferase SPD_RS04870 PF05958 tRNA (Uracil-5-)-methyltransferase SPD_RS04890 PF01032 FecCD transport family SPD_RS04895 PF01032 FecCD transport family SPD_RS04900 PF00005 ABC transporter SPD_RS04920 PF00239 Resolvase, N terminal domain SPD_RS04920 PF02796 Helix-turn-helix domain of resolvase SPD_RS04945 PF00781 Diacylglycerol kinase catalytic domain SPD_RS04950 PF00128 Alpha amylase, catalytic domain SPD_RS04950 PF02903 Alpha amylase, N-terminal ig-like domain SPD_RS04965 PF01381 Helix-turn-helix SPD_RS04970 PF06414 Zeta toxin SPD_RS04995 PF03432 Relaxase/Mobilisation nuclease domain SPD_RS05040 PF13193 AMP-binding enzyme C-terminal domain SPD_RS05040 PF00501 AMP-binding enzyme SPD_RS05065 PF05977 Transmembrane secretion effector SPD_RS05075 PF01098 Cell cycle protein SPD_RS05080 PF00311 Phosphoenolpyruvate carboxylase SPD_RS05095 PF00005 ABC transporter SPD_RS05100 PF10410 DnaB-helicase binding domain of primase SPD_RS05100 PF08275 DNA primase catalytic core, N-terminal domain SPD_RS05100 PF01807 CHC2 zinc finger SPD_RS05105 PF04545 Sigma-70, region 4 SPD_RS05105 PF04542 Sigma-70 region 2 SPD_RS05105 PF00140 Sigma-70 factor, region 1.2 SPD_RS05105 PF04539 Sigma-70 region 3 SPD_RS05105 PF03979 Sigma-70 factor, region 1.1 SPD_RS05110 PF01883 Iron-sulfur cluster assembly protein SPD_RS05115 PF13439 Glycosyltransferase Family 4 SPD_RS05115 PF00534 Glycosyl transferases group 1 SPD_RS05120 PF13439 Glycosyltransferase Family 4 SPD_RS05120 PF00534 Glycosyl transferases group 1 SPD_RS05135 PF09269 Domain of unknown function (DUF1967) SPD_RS05135 PF01018 GTP1/OBG SPD_RS05135 PF01926 50S ribosome-binding GTPase SPD_RS05145 PF13683 Integrase core domain SPD_RS05145 PF01610 Transposase SPD_RS05160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPD_RS05170 PF00392 Bacterial regulatory proteins, gntR family SPD_RS05170 PF07085 DRTGG domain SPD_RS05170 PF03061 Thioesterase superfamily SPD_RS05170 PF00571 CBS domain SPD_RS05175 PF00557 Metallopeptidase family M24 SPD_RS05190 PF13361 UvrD-like helicase C-terminal domain SPD_RS05190 PF00580 UvrD/REP helicase N-terminal domain SPD_RS05195 PF04002 RadC-like JAB domain SPD_RS05200 PF07722 Peptidase C26 SPD_RS05205 PF02629 CoA binding domain SPD_RS05205 PF06971 Putative DNA-binding protein N-terminus SPD_RS05220 PF00266 Aminotransferase class-V SPD_RS05225 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPD_RS05225 PF14572 Phosphoribosyl synthetase-associated domain SPD_RS05235 PF04607 Region found in RelA / SpoT proteins SPD_RS05240 PF01513 ATP-NAD kinase SPD_RS05245 PF00849 RNA pseudouridylate synthase SPD_RS05250 PF01515 Phosphate acetyl/butaryl transferase SPD_RS05255 PF13683 Integrase core domain SPD_RS05255 PF01610 Transposase SPD_RS05270 PF02575 YbaB/EbfC DNA-binding family SPD_RS05280 PF00829 Ribosomal prokaryotic L21 protein SPD_RS05290 PF01016 Ribosomal L27 protein SPD_RS05300 PF06574 FAD synthetase SPD_RS05300 PF01687 Riboflavin kinase SPD_RS05305 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPD_RS05305 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPD_RS05310 PF02645 Uncharacterised protein, DegV family COG1307 SPD_RS05315 PF00216 Bacterial DNA-binding protein SPD_RS05320 PF16326 ABC transporter C-terminal domain SPD_RS05320 PF00005 ABC transporter SPD_RS05320 PF12848 ABC transporter SPD_RS05335 PF12826 Helix-hairpin-helix motif SPD_RS05335 PF03120 NAD-dependent DNA ligase OB-fold domain SPD_RS05335 PF00533 BRCA1 C Terminus (BRCT) domain SPD_RS05335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPD_RS05335 PF01653 NAD-dependent DNA ligase adenylation domain SPD_RS05340 PF17999 Pullulanase N1-terminal domain SPD_RS05340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPD_RS05340 PF00128 Alpha amylase, catalytic domain SPD_RS05355 PF00171 Aldehyde dehydrogenase family SPD_RS05360 PF02806 Alpha amylase, C-terminal all-beta domain SPD_RS05360 PF00128 Alpha amylase, catalytic domain SPD_RS05360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPD_RS05365 PF00483 Nucleotidyl transferase SPD_RS05370 PF00483 Nucleotidyl transferase SPD_RS05375 PF08323 Starch synthase catalytic domain SPD_RS05375 PF00534 Glycosyl transferases group 1 SPD_RS05385 PF02595 Glycerate kinase family SPD_RS05395 PF03952 Enolase, N-terminal domain SPD_RS05395 PF00113 Enolase, C-terminal TIM barrel domain SPD_RS05410 PF12705 PD-(D/E)XK nuclease superfamily SPD_RS05415 PF12705 PD-(D/E)XK nuclease superfamily SPD_RS05415 PF00580 UvrD/REP helicase N-terminal domain SPD_RS05415 PF13361 UvrD-like helicase C-terminal domain SPD_RS05425 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPD_RS05425 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPD_RS05425 PF07501 G5 domain SPD_RS05425 PF07581 The GLUG motif SPD_RS05425 PF00746 LPXTG cell wall anchor motif SPD_RS05425 PF04650 YSIRK type signal peptide SPD_RS05430 PF01926 50S ribosome-binding GTPase SPD_RS05435 PF01351 Ribonuclease HII SPD_RS05440 PF00654 Voltage gated chloride channel SPD_RS05445 PF00589 Phage integrase family SPD_RS05450 PF10437 Bacterial lipoate protein ligase C-terminus SPD_RS05450 PF03099 Biotin/lipoate A/B protein ligase family SPD_RS05455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPD_RS05455 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS05460 PF00364 Biotin-requiring enzyme SPD_RS05460 PF02817 e3 binding domain SPD_RS05460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPD_RS05465 PF02780 Transketolase, C-terminal domain SPD_RS05465 PF02779 Transketolase, pyrimidine binding domain SPD_RS05470 PF00676 Dehydrogenase E1 component SPD_RS05475 PF01554 MatE SPD_RS05485 PF01979 Amidohydrolase family SPD_RS05490 PF00293 NUDIX domain SPD_RS05495 PF03167 Uracil DNA glycosylase superfamily SPD_RS05505 PF13419 Haloacid dehalogenase-like hydrolase SPD_RS05525 PF05524 PEP-utilising enzyme, N-terminal SPD_RS05525 PF00391 PEP-utilising enzyme, mobile domain SPD_RS05525 PF02896 PEP-utilising enzyme, TIM barrel domain SPD_RS05530 PF00381 PTS HPr component phosphorylation site SPD_RS05535 PF00462 Glutaredoxin SPD_RS05540 PF02867 Ribonucleotide reductase, barrel domain SPD_RS05540 PF00317 Ribonucleotide reductase, all-alpha domain SPD_RS05540 PF08343 Ribonucleotide reductase N-terminal SPD_RS05545 PF00268 Ribonucleotide reductase, small chain SPD_RS05550 PF00455 DeoR C terminal sensor domain SPD_RS05550 PF08220 DeoR-like helix-turn-helix domain SPD_RS05555 PF00232 Glycosyl hydrolase family 1 SPD_RS05560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS05560 PF02378 Phosphotransferase system, EIIC SPD_RS05565 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPD_RS05570 PF00874 PRD domain SPD_RS05570 PF03123 CAT RNA binding domain SPD_RS05575 PF01791 DeoC/LacD family aldolase SPD_RS05580 PF00294 pfkB family carbohydrate kinase SPD_RS05585 PF02502 Ribose/Galactose Isomerase SPD_RS05590 PF02502 Ribose/Galactose Isomerase SPD_RS05595 PF01263 Aldose 1-epimerase SPD_RS05625 PF06421 GTP-binding protein LepA C-terminus SPD_RS05625 PF03144 Elongation factor Tu domain 2 SPD_RS05625 PF00009 Elongation factor Tu GTP binding domain SPD_RS05625 PF00679 Elongation factor G C-terminus SPD_RS05630 PF00149 Calcineurin-like phosphoesterase SPD_RS05635 PF13476 AAA domain SPD_RS05640 PF02863 Arginine repressor, C-terminal domain SPD_RS05640 PF01316 Arginine repressor, DNA binding domain SPD_RS05645 PF01728 FtsJ-like methyltransferase SPD_RS05645 PF01479 S4 domain SPD_RS05650 PF00348 Polyprenyl synthetase SPD_RS05655 PF02609 Exonuclease VII small subunit SPD_RS05660 PF02601 Exonuclease VII, large subunit SPD_RS05660 PF13742 OB-fold nucleic acid binding domain SPD_RS05665 PF00485 Phosphoribulokinase / Uridine kinase family SPD_RS05680 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPD_RS05680 PF16198 tRNA pseudouridylate synthase B C-terminal domain SPD_RS05705 PF04203 Sortase domain SPD_RS05710 PF00521 DNA gyrase/topoisomerase IV, subunit A SPD_RS05710 PF03989 DNA gyrase C-terminal domain, beta-propeller SPD_RS05715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPD_RS05715 PF00056 lactate/malate dehydrogenase, NAD binding domain SPD_RS05725 PF07669 Eco57I restriction-modification methylase SPD_RS05740 PF00753 Metallo-beta-lactamase superfamily SPD_RS05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS05745 PF00672 HAMP domain SPD_RS05745 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS05745 PF13426 PAS domain SPD_RS05750 PF00072 Response regulator receiver domain SPD_RS05750 PF00486 Transcriptional regulatory protein, C terminal SPD_RS05755 PF14815 NUDIX domain SPD_RS05755 PF00730 HhH-GPD superfamily base excision DNA repair protein SPD_RS05760 PF01268 Formate--tetrahydrofolate ligase SPD_RS05770 PF02441 Flavoprotein SPD_RS05775 PF12822 ECF transporter, substrate-specific component SPD_RS05785 PF08279 HTH domain SPD_RS05785 PF02829 3H domain SPD_RS05805 PF04851 Type III restriction enzyme, res subunit SPD_RS05805 PF02151 UvrB/uvrC motif SPD_RS05805 PF12344 Ultra-violet resistance protein B SPD_RS05805 PF17757 UvrB interaction domain SPD_RS05805 PF00271 Helicase conserved C-terminal domain SPD_RS05815 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS05820 PF00005 ABC transporter SPD_RS05825 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SPD_RS05825 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SPD_RS05830 PF02881 SRP54-type protein, helical bundle domain SPD_RS05830 PF00448 SRP54-type protein, GTPase domain SPD_RS05845 PF02463 RecF/RecN/SMC N terminal domain SPD_RS05845 PF06470 SMC proteins Flexible Hinge Domain SPD_RS05850 PF14622 Ribonuclease-III-like SPD_RS05850 PF00035 Double-stranded RNA binding motif SPD_RS05860 PF00478 IMP dehydrogenase / GMP reductase domain SPD_RS05870 PF12102 Domain of unknown function (DUF3578) SPD_RS05870 PF07728 AAA domain (dynein-related subfamily) SPD_RS05885 PF00694 Aconitase C-terminal domain SPD_RS05895 PF00180 Isocitrate/isopropylmalate dehydrogenase SPD_RS05900 PF08502 LeuA allosteric (dimerisation) domain SPD_RS05900 PF00682 HMGL-like SPD_RS05905 PF00682 HMGL-like SPD_RS05905 PF08502 LeuA allosteric (dimerisation) domain SPD_RS05915 PF03932 CutC family SPD_RS05920 PF04304 Protein of unknown function (DUF454) SPD_RS05925 PF01751 Toprim domain SPD_RS05925 PF01131 DNA topoisomerase SPD_RS05925 PF01396 Topoisomerase DNA binding C4 zinc finger SPD_RS05935 PF02481 DNA recombination-mediator protein A SPD_RS05935 PF18255 DNA processing protein A sterile alpha motif domain SPD_RS05940 PF12804 MobA-like NTP transferase domain SPD_RS05955 PF08240 Alcohol dehydrogenase GroES-like domain SPD_RS05960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SPD_RS05970 PF04991 LicD family SPD_RS05975 PF04991 LicD family SPD_RS05980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPD_RS05980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPD_RS05980 PF02142 MGS-like domain SPD_RS05985 PF00117 Glutamine amidotransferase class-I SPD_RS05985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPD_RS05990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPD_RS05990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPD_RS05995 PF00156 Phosphoribosyl transferase domain SPD_RS06000 PF10576 Iron-sulfur binding domain of endonuclease III SPD_RS06000 PF00730 HhH-GPD superfamily base excision DNA repair protein SPD_RS06000 PF00633 Helix-hairpin-helix motif SPD_RS06015 PF16326 ABC transporter C-terminal domain SPD_RS06015 PF12848 ABC transporter SPD_RS06015 PF00005 ABC transporter SPD_RS06020 PF01435 Peptidase family M48 SPD_RS06025 PF04011 LemA family SPD_RS06030 PF02527 rRNA small subunit methyltransferase G SPD_RS06035 PF00860 Permease family SPD_RS06040 PF00448 SRP54-type protein, GTPase domain SPD_RS06040 PF02978 Signal peptide binding domain SPD_RS06040 PF02881 SRP54-type protein, helical bundle domain SPD_RS06045 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPD_RS06055 PF01966 HD domain SPD_RS06070 PF01245 Ribosomal protein L19 SPD_RS06075 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SPD_RS06080 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SPD_RS06085 PF00800 Prephenate dehydratase SPD_RS06085 PF01817 Chorismate mutase type II SPD_RS06085 PF01842 ACT domain SPD_RS06090 PF00258 Flavodoxin SPD_RS06095 PF01368 DHH family SPD_RS06095 PF02272 DHHA1 domain SPD_RS06100 PF01197 Ribosomal protein L31 SPD_RS06110 PF10518 TAT (twin-arginine translocation) pathway signal sequence SPD_RS06110 PF04261 Dyp-type peroxidase family SPD_RS06120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SPD_RS06120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SPD_RS06130 PF03412 Peptidase C39 family SPD_RS06130 PF00664 ABC transporter transmembrane region SPD_RS06130 PF00005 ABC transporter SPD_RS06145 PF00701 Dihydrodipicolinate synthetase family SPD_RS06150 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPD_RS06155 PF04608 Phosphatidylglycerophosphatase A SPD_RS06165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPD_RS06165 PF00005 ABC transporter SPD_RS06175 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06175 PF12911 N-terminal TM domain of oligopeptide transport permease C SPD_RS06180 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS06195 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPD_RS06220 PF00005 ABC transporter SPD_RS06220 PF02687 FtsX-like permease family SPD_RS06220 PF12704 MacB-like periplasmic core domain SPD_RS06225 PF00664 ABC transporter transmembrane region SPD_RS06225 PF00005 ABC transporter SPD_RS06230 PF00326 Prolyl oligopeptidase family SPD_RS06230 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SPD_RS06235 PF00069 Protein kinase domain SPD_RS06265 PF00542 Ribosomal protein L7/L12 C-terminal domain SPD_RS06265 PF16320 Ribosomal protein L7/L12 dimerisation domain SPD_RS06270 PF00466 Ribosomal protein L10 SPD_RS06280 PF01979 Amidohydrolase family SPD_RS06285 PF00005 ABC transporter SPD_RS06285 PF00664 ABC transporter transmembrane region SPD_RS06290 PF00664 ABC transporter transmembrane region SPD_RS06290 PF00005 ABC transporter SPD_RS06295 PF01641 SelR domain SPD_RS06295 PF01625 Peptide methionine sulfoxide reductase SPD_RS06305 PF08544 GHMP kinases C terminal SPD_RS06305 PF00288 GHMP kinases N terminal domain SPD_RS06310 PF00742 Homoserine dehydrogenase SPD_RS06310 PF03447 Homoserine dehydrogenase, NAD binding domain SPD_RS06315 PF05389 Negative regulator of genetic competence (MecA) SPD_RS06330 PF00535 Glycosyl transferase family 2 SPD_RS06335 PF13439 Glycosyltransferase Family 4 SPD_RS06335 PF00534 Glycosyl transferases group 1 SPD_RS06340 PF04991 LicD family SPD_RS06345 PF03816 Cell envelope-related transcriptional attenuator domain SPD_RS06350 PF00800 Prephenate dehydratase SPD_RS06355 PF01202 Shikimate kinase SPD_RS06360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPD_RS06365 PF06133 Control of competence regulator ComK, YlbF/YmcA SPD_RS06370 PF02153 Prephenate dehydrogenase SPD_RS06375 PF01264 Chorismate synthase SPD_RS06380 PF01761 3-dehydroquinate synthase SPD_RS06385 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPD_RS06385 PF08501 Shikimate dehydrogenase substrate binding domain SPD_RS06390 PF01487 Type I 3-dehydroquinase SPD_RS06395 PF17785 PUA-like domain SPD_RS06395 PF10672 S-adenosylmethionine-dependent methyltransferase SPD_RS06405 PF00005 ABC transporter SPD_RS06410 PF00128 Alpha amylase, catalytic domain SPD_RS06410 PF09154 Domain of unknown function (DUF1939) SPD_RS06415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPD_RS06415 PF01411 tRNA synthetases class II (A) SPD_RS06415 PF02272 DHHA1 domain SPD_RS06430 PF13416 Bacterial extracellular solute-binding protein SPD_RS06435 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06445 PF00005 ABC transporter SPD_RS06445 PF08402 TOBE domain SPD_RS06450 PF01565 FAD binding domain SPD_RS06450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPD_RS06460 PF03306 Alpha-acetolactate decarboxylase SPD_RS06465 PF00392 Bacterial regulatory proteins, gntR family SPD_RS06465 PF00155 Aminotransferase class I and II SPD_RS06470 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS06475 PF01895 PhoU domain SPD_RS06480 PF00005 ABC transporter SPD_RS06485 PF00005 ABC transporter SPD_RS06490 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06495 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06500 PF12849 PBP superfamily domain SPD_RS06505 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SPD_RS06505 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF SPD_RS06505 PF01189 16S rRNA methyltransferase RsmB/F SPD_RS06510 PF00459 Inositol monophosphatase family SPD_RS06515 PF05256 Uncharacterised protein family (UPF0223) SPD_RS06520 PF03960 ArsC family SPD_RS06530 PF13344 Haloacid dehalogenase-like hydrolase SPD_RS06540 PF04055 Radical SAM superfamily SPD_RS06540 PF06969 HemN C-terminal domain SPD_RS06555 PF01790 Prolipoprotein diacylglyceryl transferase SPD_RS06560 PF02603 HPr Serine kinase N terminus SPD_RS06560 PF07475 HPr Serine kinase C-terminal domain SPD_RS06565 PF01165 Ribosomal protein S21 SPD_RS06570 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPD_RS06575 PF02547 Queuosine biosynthesis protein SPD_RS06590 PF13302 Acetyltransferase (GNAT) domain SPD_RS06595 PF02540 NAD synthase SPD_RS06600 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SPD_RS06600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SPD_RS06600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPD_RS06610 PF01381 Helix-turn-helix SPD_RS06620 PF00005 ABC transporter SPD_RS06625 PF16325 Peptidase family U32 C-terminal domain SPD_RS06625 PF01136 Peptidase family U32 SPD_RS06635 PF16325 Peptidase family U32 C-terminal domain SPD_RS06635 PF01136 Peptidase family U32 SPD_RS06650 PF01555 DNA methylase SPD_RS06650 PF18755 Restriction Enzyme Adenine Methylase Associated SPD_RS06660 PF00005 ABC transporter SPD_RS06660 PF00664 ABC transporter transmembrane region SPD_RS06665 PF00005 ABC transporter SPD_RS06665 PF00664 ABC transporter transmembrane region SPD_RS06680 PF00005 ABC transporter SPD_RS06715 PF00117 Glutamine amidotransferase class-I SPD_RS06715 PF00958 GMP synthase C terminal domain SPD_RS06715 PF02540 NAD synthase SPD_RS06720 PF00392 Bacterial regulatory proteins, gntR family SPD_RS06720 PF07702 UTRA domain SPD_RS06725 PF00892 EamA-like transporter family SPD_RS06730 PF00144 Beta-lactamase SPD_RS06755 PF09587 Bacterial capsule synthesis protein PGA_cap SPD_RS06765 PF01327 Polypeptide deformylase SPD_RS06770 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPD_RS06770 PF00588 SpoU rRNA Methylase family SPD_RS06775 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS06785 PF00005 ABC transporter SPD_RS06790 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS06795 PF03960 ArsC family SPD_RS06800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SPD_RS06800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SPD_RS06815 PF03006 Haemolysin-III related SPD_RS06820 PF01174 SNO glutamine amidotransferase family SPD_RS06825 PF01680 SOR/SNZ family SPD_RS06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS06830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPD_RS06835 PF02424 ApbE family SPD_RS06840 PF03358 NADPH-dependent FMN reductase SPD_RS06840 PF00890 FAD binding domain SPD_RS06840 PF04205 FMN-binding domain SPD_RS06845 PF03358 NADPH-dependent FMN reductase SPD_RS06845 PF04205 FMN-binding domain SPD_RS06845 PF00890 FAD binding domain SPD_RS06850 PF05979 Bacterial protein of unknown function (DUF896) SPD_RS06855 PF02092 Glycyl-tRNA synthetase beta subunit SPD_RS06860 PF02091 Glycyl-tRNA synthetase alpha subunit SPD_RS06870 PF00248 Aldo/keto reductase family SPD_RS06875 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SPD_RS06875 PF01522 Polysaccharide deacetylase SPD_RS06890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPD_RS06890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPD_RS06895 PF00270 DEAD/DEAH box helicase SPD_RS06895 PF00271 Helicase conserved C-terminal domain SPD_RS06905 PF13358 DDE superfamily endonuclease SPD_RS06910 PF00665 Integrase core domain SPD_RS06910 PF13333 Integrase core domain SPD_RS06940 PF03143 Elongation factor Tu C-terminal domain SPD_RS06940 PF00009 Elongation factor Tu GTP binding domain SPD_RS06940 PF03144 Elongation factor Tu domain 2 SPD_RS06950 PF00230 Major intrinsic protein SPD_RS06985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPD_RS06985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPD_RS06985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPD_RS06985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPD_RS06995 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPD_RS07000 PF00005 ABC transporter SPD_RS07005 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS07015 PF01594 AI-2E family transporter SPD_RS07020 PF10282 Lactonase, 7-bladed beta-propeller SPD_RS07025 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPD_RS07025 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPD_RS07030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPD_RS07030 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPD_RS07035 PF00231 ATP synthase SPD_RS07040 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPD_RS07040 PF00306 ATP synthase alpha/beta chain, C terminal domain SPD_RS07040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPD_RS07045 PF00213 ATP synthase delta (OSCP) subunit SPD_RS07050 PF00430 ATP synthase B/B' CF(0) SPD_RS07055 PF00119 ATP synthase A chain SPD_RS07060 PF00137 ATP synthase subunit C SPD_RS07070 PF00583 Acetyltransferase (GNAT) family SPD_RS07075 PF03449 Transcription elongation factor, N-terminal SPD_RS07075 PF01272 Transcription elongation factor, GreA/GreB, C-term SPD_RS07080 PF02618 YceG-like family SPD_RS07095 PF08245 Mur ligase middle domain SPD_RS07095 PF01225 Mur ligase family, catalytic domain SPD_RS07095 PF02875 Mur ligase family, glutamate ligase domain SPD_RS07105 PF12419 SNF2 Helicase protein SPD_RS07105 PF00176 SNF2 family N-terminal domain SPD_RS07105 PF00271 Helicase conserved C-terminal domain SPD_RS07110 PF00155 Aminotransferase class I and II SPD_RS07115 PF01053 Cys/Met metabolism PLP-dependent enzyme SPD_RS07120 PF00664 ABC transporter transmembrane region SPD_RS07120 PF03412 Peptidase C39 family SPD_RS07120 PF00005 ABC transporter SPD_RS07125 PF00005 ABC transporter SPD_RS07125 PF00664 ABC transporter transmembrane region SPD_RS07130 PF00664 ABC transporter transmembrane region SPD_RS07130 PF00005 ABC transporter SPD_RS07140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS07145 PF14667 Polysaccharide biosynthesis C-terminal domain SPD_RS07145 PF01943 Polysaccharide biosynthesis protein SPD_RS07150 PF02875 Mur ligase family, glutamate ligase domain SPD_RS07150 PF08245 Mur ligase middle domain SPD_RS07155 PF05532 CsbD-like SPD_RS07175 PF01368 DHH family SPD_RS07175 PF02833 DHHA2 domain SPD_RS07180 PF01541 GIY-YIG catalytic domain SPD_RS07185 PF05175 Methyltransferase small domain SPD_RS07190 PF00575 S1 RNA binding domain SPD_RS07195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPD_RS07200 PF01084 Ribosomal protein S18 SPD_RS07205 PF00436 Single-strand binding protein family SPD_RS07210 PF01250 Ribosomal protein S6 SPD_RS07215 PF01336 OB-fold nucleic acid binding domain SPD_RS07215 PF00152 tRNA synthetases class II (D, K and N) SPD_RS07225 PF00155 Aminotransferase class I and II SPD_RS07240 PF03358 NADPH-dependent FMN reductase SPD_RS07245 PF00746 LPXTG cell wall anchor motif SPD_RS07245 PF06458 MucBP domain SPD_RS07245 PF04650 YSIRK type signal peptide SPD_RS07250 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPD_RS07250 PF05043 Mga helix-turn-helix domain SPD_RS07250 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPD_RS07255 PF03883 Peroxide stress protein YaaA SPD_RS07270 PF01327 Polypeptide deformylase SPD_RS07275 PF02798 Glutathione S-transferase, N-terminal domain SPD_RS07280 PF00690 Cation transporter/ATPase, N-terminus SPD_RS07280 PF00689 Cation transporting ATPase, C-terminus SPD_RS07285 PF01545 Cation efflux family SPD_RS07285 PF16916 Dimerisation domain of Zinc Transporter SPD_RS07290 PF12848 ABC transporter SPD_RS07290 PF00005 ABC transporter SPD_RS07290 PF16326 ABC transporter C-terminal domain SPD_RS07295 PF01743 Poly A polymerase head domain SPD_RS07295 PF13735 tRNA nucleotidyltransferase domain 2 putative SPD_RS07295 PF12627 Probable RNA and SrmB- binding site of polymerase A SPD_RS07300 PF01113 Dihydrodipicolinate reductase, N-terminus SPD_RS07300 PF05173 Dihydrodipicolinate reductase, C-terminus SPD_RS07305 PF02645 Uncharacterised protein, DegV family COG1307 SPD_RS07315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPD_RS07315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPD_RS07315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPD_RS07315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPD_RS07325 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPD_RS07335 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS07340 PF10298 WhiA N-terminal LAGLIDADG-like domain SPD_RS07340 PF14527 WhiA LAGLIDADG-like domain SPD_RS07340 PF02650 WhiA C-terminal HTH domain SPD_RS07345 PF01933 Uncharacterised protein family UPF0052 SPD_RS07350 PF03668 P-loop ATPase protein family SPD_RS07355 PF01042 Endoribonuclease L-PSP SPD_RS07360 PF01926 50S ribosome-binding GTPase SPD_RS07365 PF10431 C-terminal, D2-small domain, of ClpB protein SPD_RS07365 PF07724 AAA domain (Cdc48 subfamily) SPD_RS07365 PF06689 ClpX C4-type zinc finger SPD_RS07375 PF00186 Dihydrofolate reductase SPD_RS07380 PF00210 Ferritin-like domain SPD_RS07385 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain SPD_RS07385 PF17890 Peptidoglycan hydrolase LytB WW-like domain SPD_RS07385 PF01473 Putative cell wall binding repeat SPD_RS07385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPD_RS07390 PF00121 Triosephosphate isomerase SPD_RS07395 PF07261 Replication initiation and membrane attachment SPD_RS07400 PF04204 Homoserine O-succinyltransferase SPD_RS07405 PF00156 Phosphoribosyl transferase domain SPD_RS07410 PF13649 Methyltransferase domain SPD_RS07420 PF00005 ABC transporter SPD_RS07420 PF17912 MalK OB fold domain SPD_RS07420 PF03459 TOBE domain SPD_RS07430 PF00857 Isochorismatase family SPD_RS07435 PF08222 CodY helix-turn-helix domain SPD_RS07435 PF06018 CodY GAF-like domain SPD_RS07440 PF00271 Helicase conserved C-terminal domain SPD_RS07440 PF00270 DEAD/DEAH box helicase SPD_RS07445 PF07690 Major Facilitator Superfamily SPD_RS07450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPD_RS07450 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPD_RS07455 PF08353 Domain of unknown function (DUF1727) SPD_RS07455 PF08245 Mur ligase middle domain SPD_RS07460 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPD_RS07465 PF01321 Creatinase/Prolidase N-terminal domain SPD_RS07465 PF00557 Metallopeptidase family M24 SPD_RS07470 PF00665 Integrase core domain SPD_RS07470 PF13333 Integrase core domain SPD_RS07475 PF13276 HTH-like domain SPD_RS07475 PF00665 Integrase core domain SPD_RS07475 PF13333 Integrase core domain SPD_RS07490 PF07155 ECF-type riboflavin transporter, S component SPD_RS07495 PF08543 Phosphomethylpyrimidine kinase SPD_RS07500 PF01416 tRNA pseudouridine synthase SPD_RS07520 PF08274 PhnA Zinc-Ribbon SPD_RS07520 PF03831 PhnA domain SPD_RS07525 PF02224 Cytidylate kinase SPD_RS07540 PF00535 Glycosyl transferase family 2 SPD_RS07545 PF16363 GDP-mannose 4,6 dehydratase SPD_RS07550 PF01266 FAD dependent oxidoreductase SPD_RS07555 PF01784 NIF3 (NGG1p interacting factor 3) SPD_RS07560 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SPD_RS07570 PF01553 Acyltransferase SPD_RS07580 PF00312 Ribosomal protein S15 SPD_RS07585 PF13460 NAD(P)H-binding SPD_RS07605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPD_RS07605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPD_RS07605 PF02824 TGS domain SPD_RS07605 PF03129 Anticodon binding domain SPD_RS07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS07615 PF00486 Transcriptional regulatory protein, C terminal SPD_RS07615 PF00072 Response regulator receiver domain SPD_RS07630 PF02082 Transcriptional regulator SPD_RS07680 PF02580 D-Tyr-tRNA(Tyr) deacylase SPD_RS07685 PF02824 TGS domain SPD_RS07685 PF13291 ACT domain SPD_RS07685 PF04607 Region found in RelA / SpoT proteins SPD_RS07700 PF00753 Metallo-beta-lactamase superfamily SPD_RS07705 PF05649 Peptidase family M13 SPD_RS07705 PF01431 Peptidase family M13 SPD_RS07710 PF00005 ABC transporter SPD_RS07715 PF00950 ABC 3 transport family SPD_RS07720 PF01297 Zinc-uptake complex component A periplasmic SPD_RS07725 PF08534 Redoxin SPD_RS07735 PF00005 ABC transporter SPD_RS07735 PF12704 MacB-like periplasmic core domain SPD_RS07735 PF02687 FtsX-like permease family SPD_RS07745 PF00300 Histidine phosphatase superfamily (branch 1) SPD_RS07765 PF08264 Anticodon-binding domain of tRNA SPD_RS07765 PF00133 tRNA synthetases class I (I, L, M and V) SPD_RS07765 PF06827 Zinc finger found in FPG and IleRS SPD_RS07780 PF05103 DivIVA protein SPD_RS07795 PF04472 Cell division protein SepF SPD_RS07800 PF01168 Alanine racemase, N-terminal domain SPD_RS07805 PF00091 Tubulin/FtsZ family, GTPase domain SPD_RS07805 PF12327 FtsZ family, C-terminal domain SPD_RS07810 PF11983 Membrane-attachment and polymerisation-promoting switch SPD_RS07810 PF02491 SHS2 domain inserted in FTSA SPD_RS07820 PF00293 NUDIX domain SPD_RS07825 PF08245 Mur ligase middle domain SPD_RS07825 PF01225 Mur ligase family, catalytic domain SPD_RS07825 PF02875 Mur ligase family, glutamate ligase domain SPD_RS07830 PF07478 D-ala D-ala ligase C-terminus SPD_RS07830 PF01820 D-ala D-ala ligase N-terminus SPD_RS07835 PF02132 RecR protein SPD_RS07835 PF13662 Toprim domain SPD_RS07840 PF00905 Penicillin binding protein transpeptidase domain SPD_RS07840 PF03717 Penicillin-binding Protein dimerisation domain SPD_RS07850 PF00480 ROK family SPD_RS07855 PF00701 Dihydrodipicolinate synthetase family SPD_RS07875 PF04074 YhcH/YjgK/YiaL SPD_RS07880 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS07885 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS07895 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPD_RS07895 PF02378 Phosphotransferase system, EIIC SPD_RS07895 PF00367 phosphotransferase system, EIIB SPD_RS07900 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPD_RS07905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPD_RS07905 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPD_RS07910 PF02973 Sialidase, N-terminal domain SPD_RS07910 PF02012 BNR/Asp-box repeat SPD_RS07910 PF13088 BNR repeat-like domain SPD_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS07920 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS07925 PF01547 Bacterial extracellular solute-binding protein SPD_RS07935 PF13088 BNR repeat-like domain SPD_RS07935 PF02973 Sialidase, N-terminal domain SPD_RS07935 PF04650 YSIRK type signal peptide SPD_RS07945 PF05448 Acetyl xylan esterase (AXE1) SPD_RS07950 PF00270 DEAD/DEAH box helicase SPD_RS07950 PF00271 Helicase conserved C-terminal domain SPD_RS07950 PF17191 RecG wedge domain SPD_RS07955 PF01168 Alanine racemase, N-terminal domain SPD_RS07955 PF00842 Alanine racemase, C-terminal domain SPD_RS07960 PF01648 4'-phosphopantetheinyl transferase superfamily SPD_RS07965 PF00793 DAHP synthetase I family SPD_RS07970 PF00793 DAHP synthetase I family SPD_RS07975 PF01043 SecA preprotein cross-linking domain SPD_RS07975 PF07516 SecA Wing and Scaffold domain SPD_RS07975 PF02810 SEC-C motif SPD_RS07975 PF07517 SecA DEAD-like domain SPD_RS07985 PF00005 ABC transporter SPD_RS08020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPD_RS08020 PF01926 50S ribosome-binding GTPase SPD_RS08025 PF00881 Nitroreductase family SPD_RS08030 PF07319 Primosomal protein DnaI N-terminus SPD_RS08030 PF01695 IstB-like ATP binding protein SPD_RS08040 PF03477 ATP cone domain SPD_RS08045 PF00392 Bacterial regulatory proteins, gntR family SPD_RS08050 PF00005 ABC transporter SPD_RS08065 PF00005 ABC transporter SPD_RS08065 PF13732 Domain of unknown function (DUF4162) SPD_RS08085 PF00480 ROK family SPD_RS08090 PF02378 Phosphotransferase system, EIIC SPD_RS08090 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPD_RS08090 PF00367 phosphotransferase system, EIIB SPD_RS08100 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPD_RS08100 PF08244 Glycosyl hydrolases family 32 C terminal SPD_RS08105 PF00356 Bacterial regulatory proteins, lacI family SPD_RS08110 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPD_RS08115 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPD_RS08115 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SPD_RS08145 PF03793 PASTA domain SPD_RS08145 PF00069 Protein kinase domain SPD_RS08155 PF01029 NusB family SPD_RS08155 PF01189 16S rRNA methyltransferase RsmB/F SPD_RS08160 PF00551 Formyl transferase SPD_RS08160 PF02911 Formyl transferase, C-terminal domain SPD_RS08165 PF04851 Type III restriction enzyme, res subunit SPD_RS08165 PF18074 Primosomal protein N C-terminal domain SPD_RS08165 PF17764 3′ DNA-binding domain (3′BD) SPD_RS08165 PF00271 Helicase conserved C-terminal domain SPD_RS08165 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SPD_RS08170 PF01192 RNA polymerase Rpb6 SPD_RS08175 PF00625 Guanylate kinase SPD_RS08180 PF01966 HD domain SPD_RS08180 PF12072 Domain of unknown function (DUF3552) SPD_RS08180 PF00013 KH domain SPD_RS08185 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SPD_RS08195 PF05636 HIGH Nucleotidyl Transferase SPD_RS08200 PF13649 Methyltransferase domain SPD_RS08215 PF01966 HD domain SPD_RS08220 PF01467 Cytidylyltransferase-like SPD_RS08225 PF01985 CRS1 / YhbY (CRM) domain SPD_RS08230 PF01926 50S ribosome-binding GTPase SPD_RS08245 PF00924 Mechanosensitive ion channel SPD_RS08270 PF00085 Thioredoxin SPD_RS08275 PF06508 Queuosine biosynthesis protein QueC SPD_RS08275 PF14489 QueF-like protein SPD_RS08285 PF00230 Major intrinsic protein SPD_RS08300 PF08439 Oligopeptidase F SPD_RS08300 PF01432 Peptidase family M3 SPD_RS08305 PF04452 RNA methyltransferase SPD_RS08315 PF00293 NUDIX domain SPD_RS08350 PF16193 AAA C-terminal domain SPD_RS08350 PF12002 MgsA AAA+ ATPase C terminal SPD_RS08350 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPD_RS08360 PF08244 Glycosyl hydrolases family 32 C terminal SPD_RS08360 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPD_RS08365 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08370 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08380 PF00356 Bacterial regulatory proteins, lacI family SPD_RS08385 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPD_RS08385 PF05043 Mga helix-turn-helix domain SPD_RS08385 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPD_RS08405 PF03780 Asp23 family, cell envelope-related function SPD_RS08410 PF05532 CsbD-like SPD_RS08440 PF00290 Tryptophan synthase alpha chain SPD_RS08445 PF00291 Pyridoxal-phosphate dependent enzyme SPD_RS08450 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SPD_RS08455 PF00218 Indole-3-glycerol phosphate synthase SPD_RS08460 PF00591 Glycosyl transferase family, a/b domain SPD_RS08460 PF02885 Glycosyl transferase family, helical bundle domain SPD_RS08465 PF00117 Glutamine amidotransferase class-I SPD_RS08470 PF04715 Anthranilate synthase component I, N terminal region SPD_RS08470 PF00425 chorismate binding enzyme SPD_RS08485 PF00356 Bacterial regulatory proteins, lacI family SPD_RS08495 PF02308 MgtC family SPD_RS08500 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08505 PF08402 TOBE domain SPD_RS08505 PF00005 ABC transporter SPD_RS08520 PF16363 GDP-mannose 4,6 dehydratase SPD_RS08525 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPD_RS08525 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPD_RS08530 PF01895 PhoU domain SPD_RS08545 PF13229 Right handed beta helix region SPD_RS08545 PF12708 Pectate lyase superfamily protein SPD_RS08545 PF04650 YSIRK type signal peptide SPD_RS08560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SPD_RS08565 PF02397 Bacterial sugar transferase SPD_RS08570 PF00664 ABC transporter transmembrane region SPD_RS08570 PF00005 ABC transporter SPD_RS08575 PF00005 ABC transporter SPD_RS08575 PF00664 ABC transporter transmembrane region SPD_RS08595 PF03372 Endonuclease/Exonuclease/phosphatase family SPD_RS08605 PF00156 Phosphoribosyl transferase domain SPD_RS08610 PF00860 Permease family SPD_RS08615 PF14207 DpnD/PcfM-like protein SPD_RS08620 PF06044 Dam-replacing family SPD_RS08620 PF17726 Dam-replacing HTH domain SPD_RS08630 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPD_RS08630 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPD_RS08635 PF00288 GHMP kinases N terminal domain SPD_RS08635 PF08544 GHMP kinases C terminal SPD_RS08635 PF10509 Galactokinase galactose-binding signature SPD_RS08640 PF00356 Bacterial regulatory proteins, lacI family SPD_RS08645 PF08240 Alcohol dehydrogenase GroES-like domain SPD_RS08645 PF00107 Zinc-binding dehydrogenase SPD_RS08650 PF13411 MerR HTH family regulatory protein SPD_RS08655 PF01545 Cation efflux family SPD_RS08665 PF04973 Nicotinamide mononucleotide transporter SPD_RS08680 PF01610 Transposase SPD_RS08680 PF13683 Integrase core domain SPD_RS08685 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08690 PF00005 ABC transporter SPD_RS08690 PF00571 CBS domain SPD_RS08710 PF05343 M42 glutamyl aminopeptidase SPD_RS08715 PF01370 NAD dependent epimerase/dehydratase family SPD_RS08725 PF01032 FecCD transport family SPD_RS08730 PF01032 FecCD transport family SPD_RS08735 PF00005 ABC transporter SPD_RS08740 PF01497 Periplasmic binding protein SPD_RS08745 PF01809 Putative membrane protein insertion efficiency factor SPD_RS08750 PF01479 S4 domain SPD_RS08750 PF00849 RNA pseudouridylate synthase SPD_RS08755 PF04079 Segregation and condensation complex subunit ScpB SPD_RS08760 PF02616 Segregation and condensation protein ScpA SPD_RS08765 PF00589 Phage integrase family SPD_RS08765 PF02899 Phage integrase, N-terminal SAM-like domain SPD_RS08780 PF01725 Ham1 family SPD_RS08785 PF01177 Asp/Glu/Hydantoin racemase SPD_RS08790 PF03672 Uncharacterised protein family (UPF0154) SPD_RS08795 PF16657 Maltogenic Amylase, C-terminal domain SPD_RS08795 PF00128 Alpha amylase, catalytic domain SPD_RS08800 PF00367 phosphotransferase system, EIIB SPD_RS08800 PF02378 Phosphotransferase system, EIIC SPD_RS08805 PF00392 Bacterial regulatory proteins, gntR family SPD_RS08805 PF07702 UTRA domain SPD_RS08815 PF01610 Transposase SPD_RS08815 PF13683 Integrase core domain SPD_RS08820 PF00005 ABC transporter SPD_RS08820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPD_RS08825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPD_RS08825 PF00005 ABC transporter SPD_RS08830 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08830 PF12911 N-terminal TM domain of oligopeptide transport permease C SPD_RS08835 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPD_RS08850 PF00128 Alpha amylase, catalytic domain SPD_RS08860 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08865 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS08870 PF01547 Bacterial extracellular solute-binding protein SPD_RS08875 PF16874 Glycosyl hydrolase family 36 C-terminal domain SPD_RS08875 PF16875 Glycosyl hydrolase family 36 N-terminal domain SPD_RS08880 PF12833 Helix-turn-helix domain SPD_RS08880 PF02311 AraC-like ligand binding domain SPD_RS08885 PF02237 Biotin protein ligase C terminal domain SPD_RS08885 PF03099 Biotin/lipoate A/B protein ligase family SPD_RS08890 PF13683 Integrase core domain SPD_RS08890 PF01610 Transposase SPD_RS09005 PF05958 tRNA (Uracil-5-)-methyltransferase SPD_RS09005 PF01938 TRAM domain SPD_RS09010 PF02631 RecX family SPD_RS09015 PF04167 Protein of unknown function (DUF402) SPD_RS09025 PF13683 Integrase core domain SPD_RS09025 PF01610 Transposase SPD_RS09030 PF00118 TCP-1/cpn60 chaperonin family SPD_RS09035 PF00166 Chaperonin 10 Kd subunit SPD_RS09040 PF00436 Single-strand binding protein family SPD_RS09045 PF00106 short chain dehydrogenase SPD_RS09050 PF01588 Putative tRNA binding domain SPD_RS09050 PF14794 Domain of unknown function (DUF4479) SPD_RS09055 PF00085 Thioredoxin SPD_RS09095 PF00005 ABC transporter SPD_RS09095 PF00664 ABC transporter transmembrane region SPD_RS09120 PF01709 Transcriptional regulator SPD_RS09125 PF01289 Thiol-activated cytolysin SPD_RS09125 PF17440 Thiol-activated cytolysin beta sandwich domain SPD_RS09190 PF01510 N-acetylmuramoyl-L-alanine amidase SPD_RS09190 PF01473 Putative cell wall binding repeat SPD_RS09200 PF00154 recA bacterial DNA recombination protein SPD_RS09205 PF02464 Competence-damaged protein SPD_RS09205 PF00994 Probable molybdopterin binding domain SPD_RS09205 PF18146 Damage-inducible protein CinA KH domain SPD_RS09210 PF03816 Cell envelope-related transcriptional attenuator domain SPD_RS09220 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SPD_RS09250 PF05147 Lanthionine synthetase C-like protein SPD_RS09250 PF13575 Domain of unknown function (DUF4135) SPD_RS09265 PF03412 Peptidase C39 family SPD_RS09265 PF00005 ABC transporter SPD_RS09265 PF00664 ABC transporter transmembrane region SPD_RS09270 PF00082 Subtilase family SPD_RS09280 PF00005 ABC transporter SPD_RS09290 PF00334 Nucleoside diphosphate kinase SPD_RS09295 PF04998 RNA polymerase Rpb1, domain 5 SPD_RS09295 PF00623 RNA polymerase Rpb1, domain 2 SPD_RS09295 PF04983 RNA polymerase Rpb1, domain 3 SPD_RS09295 PF05000 RNA polymerase Rpb1, domain 4 SPD_RS09295 PF04997 RNA polymerase Rpb1, domain 1 SPD_RS09300 PF04560 RNA polymerase Rpb2, domain 7 SPD_RS09300 PF00562 RNA polymerase Rpb2, domain 6 SPD_RS09300 PF10385 RNA polymerase beta subunit external 1 domain SPD_RS09300 PF04565 RNA polymerase Rpb2, domain 3 SPD_RS09300 PF04563 RNA polymerase beta subunit SPD_RS09300 PF04561 RNA polymerase Rpb2, domain 2 SPD_RS09310 PF00571 CBS domain SPD_RS09310 PF03471 Transporter associated domain SPD_RS09310 PF01595 Cyclin M transmembrane N-terminal domain SPD_RS09315 PF01223 DNA/RNA non-specific endonuclease SPD_RS09320 PF11772 DNA-directed RNA polymerase subunit beta SPD_RS09325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPD_RS09335 PF13180 PDZ domain SPD_RS09335 PF05362 Lon protease (S16) C-terminal proteolytic domain SPD_RS09340 PF01467 Cytidylyltransferase-like SPD_RS09350 PF03590 Aspartate-ammonia ligase SPD_RS09360 PF01027 Inhibitor of apoptosis-promoting Bax1 SPD_RS09365 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPD_RS09365 PF00588 SpoU rRNA Methylase family SPD_RS09370 PF00708 Acylphosphatase SPD_RS09375 PF02096 60Kd inner membrane protein SPD_RS09380 PF04055 Radical SAM superfamily SPD_RS09385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SPD_RS09385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SPD_RS09390 PF09182 Bacterial purine repressor, N-terminal SPD_RS09390 PF00156 Phosphoribosyl transferase domain SPD_RS09395 PF01336 OB-fold nucleic acid binding domain SPD_RS09395 PF01966 HD domain SPD_RS09400 PF02646 RmuC family SPD_RS09405 PF04263 Thiamin pyrophosphokinase, catalytic domain SPD_RS09405 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SPD_RS09410 PF00834 Ribulose-phosphate 3 epimerase family SPD_RS09415 PF16745 RsgA N-terminal domain SPD_RS09415 PF03193 RsgA GTPase SPD_RS09420 PF00398 Ribosomal RNA adenine dimethylase SPD_RS09430 PF12704 MacB-like periplasmic core domain SPD_RS09430 PF02687 FtsX-like permease family SPD_RS09430 PF00005 ABC transporter SPD_RS09445 PF13662 Toprim domain SPD_RS09445 PF13331 Domain of unknown function (DUF4093) SPD_RS09450 PF01026 TatD related DNase SPD_RS09460 PF00468 Ribosomal protein L34 SPD_RS09465 PF00155 Aminotransferase class I and II SPD_RS09475 PF00582 Universal stress protein family SPD_RS09485 PF17763 Glutaminase/Asparaginase C-terminal domain SPD_RS09485 PF00710 Asparaginase, N-terminal SPD_RS09495 PF00356 Bacterial regulatory proteins, lacI family SPD_RS09500 PF00196 Bacterial regulatory proteins, luxR family SPD_RS09500 PF00072 Response regulator receiver domain SPD_RS09505 PF07730 Histidine kinase SPD_RS09505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS09515 PF00005 ABC transporter SPD_RS09605 PF02357 Transcription termination factor nusG SPD_RS09605 PF00467 KOW motif SPD_RS09615 PF00471 Ribosomal protein L33 SPD_RS09620 PF00905 Penicillin binding protein transpeptidase domain SPD_RS09620 PF00912 Transglycosylase SPD_RS09625 PF00849 RNA pseudouridylate synthase SPD_RS09630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPD_RS09630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPD_RS09635 PF02687 FtsX-like permease family SPD_RS09635 PF12704 MacB-like periplasmic core domain SPD_RS09650 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SPD_RS09650 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SPD_RS09660 PF00005 ABC transporter SPD_RS09665 PF07702 UTRA domain SPD_RS09665 PF00392 Bacterial regulatory proteins, gntR family SPD_RS09670 PF00232 Glycosyl hydrolase family 1 SPD_RS09675 PF02378 Phosphotransferase system, EIIC SPD_RS09680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS09685 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPD_RS09690 PF00465 Iron-containing alcohol dehydrogenase SPD_RS09690 PF00171 Aldehyde dehydrogenase family SPD_RS09700 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPD_RS09710 PF02779 Transketolase, pyrimidine binding domain SPD_RS09710 PF00456 Transketolase, thiamine diphosphate binding domain SPD_RS09710 PF02780 Transketolase, C-terminal domain SPD_RS09725 PF00596 Class II Aldolase and Adducin N-terminal domain SPD_RS09730 PF01261 Xylose isomerase-like TIM barrel SPD_RS09735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPD_RS09740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS09745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPD_RS09750 PF03611 PTS system sugar-specific permease component SPD_RS09760 PF14804 Jag N-terminus SPD_RS09760 PF01424 R3H domain SPD_RS09765 PF02096 60Kd inner membrane protein SPD_RS09770 PF00825 Ribonuclease P SPD_RS09775 PF00871 Acetokinase family SPD_RS09815 PF07963 Prokaryotic N-terminal methylation motif SPD_RS09820 PF00482 Type II secretion system (T2SS), protein F SPD_RS09825 PF00437 Type II/IV secretion system protein SPD_RS09835 PF00107 Zinc-binding dehydrogenase SPD_RS09835 PF13823 Alcohol dehydrogenase GroES-associated SPD_RS09835 PF08240 Alcohol dehydrogenase GroES-like domain SPD_RS09840 PF01979 Amidohydrolase family SPD_RS09845 PF01757 Acyltransferase family SPD_RS09850 PF01702 Queuine tRNA-ribosyltransferase SPD_RS09860 PF01470 Pyroglutamyl peptidase SPD_RS09865 PF01470 Pyroglutamyl peptidase SPD_RS09885 PF08645 Polynucleotide kinase 3 phosphatase SPD_RS09885 PF00475 Imidazoleglycerol-phosphate dehydratase SPD_RS09890 PF01554 MatE SPD_RS09895 PF14821 Threonine synthase N terminus SPD_RS09895 PF00291 Pyridoxal-phosphate dependent enzyme SPD_RS09985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPD_RS09990 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPD_RS09995 PF00342 Phosphoglucose isomerase SPD_RS10005 PF07722 Peptidase C26 SPD_RS10010 PF00005 ABC transporter SPD_RS10010 PF00664 ABC transporter transmembrane region SPD_RS10020 PF00005 ABC transporter SPD_RS10020 PF00664 ABC transporter transmembrane region SPD_RS10025 PF01624 MutS domain I SPD_RS10025 PF05188 MutS domain II SPD_RS10025 PF05192 MutS domain III SPD_RS10025 PF05190 MutS family domain IV SPD_RS10025 PF00488 MutS domain V SPD_RS10030 PF01316 Arginine repressor, DNA binding domain SPD_RS10030 PF02863 Arginine repressor, C-terminal domain SPD_RS10035 PF00750 tRNA synthetases class I (R) SPD_RS10035 PF05746 DALR anticodon binding domain SPD_RS10035 PF03485 Arginyl tRNA synthetase N terminal domain SPD_RS10050 PF00072 Response regulator receiver domain SPD_RS10050 PF00486 Transcriptional regulatory protein, C terminal SPD_RS10055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS10055 PF16736 Single Cache-like SPD_RS10055 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS10055 PF00989 PAS fold SPD_RS10060 PF12849 PBP superfamily domain SPD_RS10065 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS10070 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS10075 PF00005 ABC transporter SPD_RS10080 PF01895 PhoU domain SPD_RS10095 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPD_RS10095 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPD_RS10100 PF00483 Nucleotidyl transferase SPD_RS10110 PF01812 5-formyltetrahydrofolate cyclo-ligase family SPD_RS10115 PF07687 Peptidase dimerisation domain SPD_RS10115 PF01546 Peptidase family M20/M25/M40 SPD_RS10120 PF00132 Bacterial transferase hexapeptide (six repeats) SPD_RS10120 PF14602 Hexapeptide repeat of succinyl-transferase SPD_RS10120 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SPD_RS10125 PF00892 EamA-like transporter family SPD_RS10130 PF00912 Transglycosylase SPD_RS10130 PF00905 Penicillin binding protein transpeptidase domain SPD_RS10135 PF01479 S4 domain SPD_RS10135 PF00579 tRNA synthetases class I (W and Y) SPD_RS10140 PF00403 Heavy-metal-associated domain SPD_RS10150 PF13847 Methyltransferase domain SPD_RS10175 PF00343 Carbohydrate phosphorylase SPD_RS10180 PF02446 4-alpha-glucanotransferase SPD_RS10185 PF13416 Bacterial extracellular solute-binding protein SPD_RS10190 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS10195 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS10205 PF00356 Bacterial regulatory proteins, lacI family SPD_RS10205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPD_RS10215 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPD_RS10215 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPD_RS10220 PF00152 tRNA synthetases class II (D, K and N) SPD_RS10220 PF02938 GAD domain SPD_RS10220 PF01336 OB-fold nucleic acid binding domain SPD_RS10250 PF01381 Helix-turn-helix SPD_RS10265 PF03129 Anticodon binding domain SPD_RS10265 PF13393 Histidyl-tRNA synthetase SPD_RS10280 PF01883 Iron-sulfur cluster assembly protein SPD_RS10285 PF00920 Dehydratase family SPD_RS10290 PF02780 Transketolase, C-terminal domain SPD_RS10290 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SPD_RS10290 PF02779 Transketolase, pyrimidine binding domain SPD_RS10295 PF00456 Transketolase, thiamine diphosphate binding domain SPD_RS10300 PF03611 PTS system sugar-specific permease component SPD_RS10310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPD_RS10325 PF01783 Ribosomal L32p protein family SPD_RS10330 PF00471 Ribosomal protein L33 SPD_RS10360 PF00480 ROK family SPD_RS10365 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPD_RS10365 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPD_RS10365 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SPD_RS10365 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SPD_RS10365 PF09261 Alpha mannosidase middle domain SPD_RS10375 PF17678 Glycosyl hydrolase family 92 N-terminal domain SPD_RS10375 PF07971 Glycosyl hydrolase family 92 SPD_RS10390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPD_RS10390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPD_RS10395 PF00696 Amino acid kinase family SPD_RS10400 PF03606 C4-dicarboxylate anaerobic carrier SPD_RS10405 PF01546 Peptidase family M20/M25/M40 SPD_RS10415 PF07581 The GLUG motif SPD_RS10415 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPD_RS10415 PF04650 YSIRK type signal peptide SPD_RS10415 PF07501 G5 domain SPD_RS10415 PF00746 LPXTG cell wall anchor motif SPD_RS10415 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPD_RS10430 PF00465 Iron-containing alcohol dehydrogenase SPD_RS10435 PF07882 L-fucose isomerase, second N-terminal domain SPD_RS10435 PF07881 L-fucose isomerase, first N-terminal domain SPD_RS10435 PF02952 L-fucose isomerase, C-terminal domain SPD_RS10440 PF08306 Glycosyl hydrolase family 98 SPD_RS10440 PF08305 NPCBM/NEW2 domain SPD_RS10440 PF08307 Glycosyl hydrolase family 98 C-terminal domain SPD_RS10450 PF03613 PTS system mannose/fructose/sorbose family IID component SPD_RS10460 PF03830 PTS system sorbose subfamily IIB component SPD_RS10470 PF05025 RbsD / FucU transport protein family SPD_RS10475 PF00596 Class II Aldolase and Adducin N-terminal domain SPD_RS10480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPD_RS10480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPD_RS10485 PF00455 DeoR C terminal sensor domain SPD_RS10485 PF08220 DeoR-like helix-turn-helix domain SPD_RS10490 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPD_RS10490 PF01297 Zinc-uptake complex component A periplasmic SPD_RS10495 PF00950 ABC 3 transport family SPD_RS10500 PF00005 ABC transporter SPD_RS10505 PF01047 MarR family SPD_RS10510 PF04914 DltD protein SPD_RS10515 PF00550 Phosphopantetheine attachment site SPD_RS10520 PF03062 MBOAT, membrane-bound O-acyltransferase family SPD_RS10525 PF00501 AMP-binding enzyme SPD_RS10525 PF13193 AMP-binding enzyme C-terminal domain SPD_RS10535 PF07690 Major Facilitator Superfamily SPD_RS10540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SPD_RS10560 PF00230 Major intrinsic protein SPD_RS10565 PF01266 FAD dependent oxidoreductase SPD_RS10565 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SPD_RS10570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPD_RS10570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPD_RS10580 PF01430 Hsp33 protein SPD_RS10585 PF01207 Dihydrouridine synthase (Dus) SPD_RS10595 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SPD_RS10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPD_RS10600 PF00512 His Kinase A (phospho-acceptor) domain SPD_RS10600 PF00672 HAMP domain SPD_RS10605 PF00072 Response regulator receiver domain SPD_RS10605 PF00486 Transcriptional regulatory protein, C terminal SPD_RS10615 PF17871 AAA lid domain SPD_RS10615 PF00004 ATPase family associated with various cellular activities (AAA) SPD_RS10615 PF07724 AAA domain (Cdc48 subfamily) SPD_RS10615 PF10431 C-terminal, D2-small domain, of ClpB protein SPD_RS10615 PF02861 Clp amino terminal domain, pathogenicity island component SPD_RS10620 PF17727 CtsR C-terminal dimerization domain SPD_RS10620 PF05848 CtsR N-terminal HTH domain SPD_RS10625 PF00005 ABC transporter SPD_RS10630 PF09084 NMT1/THI5 like SPD_RS10635 PF00528 Binding-protein-dependent transport system inner membrane component SPD_RS10655 PF03796 DnaB-like helicase C terminal domain SPD_RS10655 PF00772 DnaB-like helicase N terminal domain SPD_RS10660 PF01281 Ribosomal protein L9, N-terminal domain SPD_RS10660 PF03948 Ribosomal protein L9, C-terminal domain SPD_RS10665 PF02272 DHHA1 domain SPD_RS10665 PF01368 DHH family SPD_RS10670 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SPD_RS10670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPD_RS10680 PF00271 Helicase conserved C-terminal domain SPD_RS10680 PF04851 Type III restriction enzyme, res subunit SPD_RS10685 PF09186 Domain of unknown function (DUF1949) SPD_RS10685 PF01205 Uncharacterized protein family UPF0029 SPD_RS10690 PF00291 Pyridoxal-phosphate dependent enzyme SPD_RS10700 PF13358 DDE superfamily endonuclease SPD_RS10710 PF00889 Elongation factor TS SPD_RS10715 PF00318 Ribosomal protein S2 SPD_RS10720 PF05257 CHAP domain SPD_RS10720 PF01476 LysM domain SPD_RS10730 PF04085 rod shape-determining protein MreC SPD_RS10735 PF02361 Cobalt transport protein SPD_RS10740 PF00005 ABC transporter SPD_RS10745 PF00005 ABC transporter SPD_RS10750 PF01066 CDP-alcohol phosphatidyltransferase SPD_RS10760 PF00675 Insulinase (Peptidase family M16) SPD_RS10760 PF05193 Peptidase M16 inactive domain SPD_RS10765 PF00675 Insulinase (Peptidase family M16) SPD_RS10765 PF05193 Peptidase M16 inactive domain SPD_RS10775 PF02463 RecF/RecN/SMC N terminal domain SPD_RS10780 PF00478 IMP dehydrogenase / GMP reductase domain SPD_RS10780 PF00571 CBS domain SPD_RS10785 PF00579 tRNA synthetases class I (W and Y) SPD_RS10790 PF00005 ABC transporter SPD_RS10790 PF12848 ABC transporter SPD_RS10840 PF03047 COMC family SPD_RS10850 PF02590 Predicted SPOUT methyltransferase SPD_RS10855 PF13180 PDZ domain SPD_RS10860 PF02195 ParB-like nuclease domain SPD_RS10860 PF17762 HTH domain found in ParB protein